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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U01910-1
Contig ID Contig-U01910-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Contig-U01910-1Q.Seq.d
CACAATAACAATAACAACAACCACAAACCTACACACAAAAAAAGAAAAAT
AGCACATGATTTTAATAATATCAATCTTATTACACATCTTGACATTATCT
ATATAATACATTTTTAGTTAATTTATAAAAAAACATTAAAAGTATTTTTA
TTGGTGTAAAATAGTATAATATGTATATATTTTTACTCCCACGTACACAA
AATCAATGACTATGACAGTTATTTTTTTTTTTTTCTTATTTTTTATATGA
TTTTTTTTTATATTATTATTATTATGATAATGGATACAACCACACGCATT
ATTTATACTTTCACACACACACAATCCAAATTGTTTAATCGCACACAAAA
ATAATAAACCATATAAAAACAAATCAACCTTCTTTTTGAAAAATACCCAA
CAATCAAAATTTTTTATTACCTTTTTTATTCTTAAACCCAATTTCGTTCA
GTTATAAAATTGAATTAACCATTTCTTATTTAAAAAATAATAAAAAAAAA
ACAAATAAATTTTAAAAA----------AAATATGTATTTTATTATTTAT
TTAATTATTTAATTATTTTTTATTTTAAAAAATTTTATTATAAAAAAAAA
AAATTGAAATCATTTTTTTATTTTATAAATAACAATACTAAACATCAAAT
TGTAATAATTTTAAATATTTGTAACACTAAAAAAACATTGTAATATCAAT
ATACATATAAAATGACTATTATTAAATCAATTACTTCAATAAACTCAAAT
ACCAATAATATAAAAAACAATATTGAAATTAATAATGTAAATAATGAAAT
TTCGAATCAAACAAAAAATAACATAACTGTGAATATGGGTGTTTTAATTT
GTGCAAACGGTGGTGGTTGTAACATTATGTAATTCCAAATAAAAAAAAAA
AAAAAAAAAAAAAAAAAATCAAAAACAAAACTTTAAATTTAAATAAACCC
AACCAGACTATTTATTTATTTATTAATTGTATTATATATAATAAAGTGTA
ATTTAAAAATTACTTTTTTTTTTTTTTTAAAAAAAAAAAAA
Gap gap included
Contig length 1031
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6313127
End point 6312104
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U01910
List of clone(s) 

est1=SSK546F,1,519
est2=SSK546Z,520,884
est3=SSA585F,635,1033
Translated Amino Acid sequence 
hnnnnnnhkpthkkrkiahdfnninlithldiiyiihf*liykktlkvfllv*nsiiciy
fyshvhkindydsyfffflifymiffyiiiimimdtttriiytfthtqsklfnrtqk**t
i*kqinllfekyptikifyylfys*tqfrsvikln*pfli*KIIKKKQINFK---

---KYVFYYLFNYLIIFYFKKFYYKKKKLKSFFYFINNNTKHQIVIILNICNTKKTL*yq
ytykmtiiksitsinsntnniknnieinnvnneisnqtknnitvnmgvlicangggcnim
*fqikkkkkkkkksktkl*i*inptrlfiyllivlyiikcnlkitfffflkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hnnnnnnhkpthkkrkiahdfnninlithldiiyiihf*liykktlkvfllv*nsiiciy
fyshvhkindydsyfffflifymiffyiiiimimdtttriiytfthtqsklfnrtqk**t
i*kqinllfekyptikifyylfys*tqfrsvikln*pfli*KIIKKKQINFK---

---KYVFYYLFNYLIIFYFKKFYYKKKKLKSFFYFINNNTKHQIVIILNICNTKKTL*yq
ytykmtiiksitsinsntnniknnieinnvnneisnqtknnitvnmgvlicangggcnim
*fqikkkkkkkkksktkl*i*inptrlfiyllivlyiikcnlkitfffflkkkk

Frame B:
titittttnlhtkkek*hmiliisillhiltlsi*yifs*fikkh*kyfywckiv*yvyi
ftptytksmtmtvifffflffi*fffillll**wiqphalfilshthnpncliahknnkp
yknkstfflkntqqskffitffilkpnfvql*n*inhflfkk**kknk*ilk---

---nmyfiiylii*lffilknfiikkkn*nhffil*itilnikl**f*ifvtlkkhcnin
ihik*lllnqllq*tqipii*ktilklim*imkfrikqkit*l*iwvf*fvqtvvvvtlc
nsk*kkkkkkkknqkqnfkfk*tqpdylfiy*lyyi**svi*kllffff*kkk

Frame C:
q*q*qqpqtytqkkknst*f**yqsyyts*hylyntflvnl*kniksifigvk*ynmyif
llprtqnq*l*qlffffsyflydfflyyyyydngynhthylyfhthtiqiv*shtkiinh
iktnqpsf*kipnnqnfllpflflnpisfsykieltisylknnkkktnkf*k---

---icillfi*lfnyflf*kill*kkkieiiflfyk*qy*tsncnnfkyl*h*knivisi
yi*ndyy*inyfnklkyq*ykkqy*n**ck**nfesnkk*hnceygcfnlckrwwl*hyv
ipnkkkkkkkkkiknktlnlnkpnqtiylfinciiynkv*fknyfffffkkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01910-1 (Contig-U01910-1Q)
/CSM_Contig/Contig-U01910-1Q.Seq.d
         (1041 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Conti...   337  1e-92
Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13881-1 (Contig-U13881-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13322-1 (Contig-U13322-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10542-1 (Contig-U10542-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01523-1 (Contig-U01523-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12593-1 (Contig-U12593-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U13176-1 (Contig-U13176-1Q) /CSM_Contig/Conti...    36  0.074

>Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Contig-U01910-1Q.Seq.d
          Length = 1041

 Score =  337 bits (170), Expect = 1e-92
 Identities = 194/206 (94%)
 Strand = Plus / Plus

                                                                       
Query: 276 gataatggatacaaccacacgcattatttatactttnnnnnnnnnnnnatccaaattgtt 335
           ||||||||||||||||||||||||||||||||||||            ||||||||||||
Sbjct: 276 gataatggatacaaccacacgcattatttatactttcacacacacacaatccaaattgtt 335

                                                                       
Query: 336 taatcgcacacaaaaataataaaccatataaaaacaaatcaaccttctttttgaaaaata 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taatcgcacacaaaaataataaaccatataaaaacaaatcaaccttctttttgaaaaata 395

                                                                       
Query: 396 cccaacaatcaaaattttttattaccttttttattcttaaacccaatttcgttcagttat 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cccaacaatcaaaattttttattaccttttttattcttaaacccaatttcgttcagttat 455

                                     
Query: 456 aaaattgaattaaccatttcttattt 481
           ||||||||||||||||||||||||||
Sbjct: 456 aaaattgaattaaccatttcttattt 481


 Score =  299 bits (151), Expect = 3e-81
 Identities = 165/172 (95%)
 Strand = Plus / Plus

                                                                       
Query: 50  tagcacatgattttaataatatcaatcttattacacatcttgacattatctatataatac 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  tagcacatgattttaataatatcaatcttattacacatcttgacattatctatataatac 109

                                                                       
Query: 110 atttttagttaatttatnnnnnnncattaaaagtatttttattggtgtaaaatagtataa 169
           |||||||||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 110 atttttagttaatttataaaaaaacattaaaagtatttttattggtgtaaaatagtataa 169

                                                               
Query: 170 tatgtatatatttttactcccacgtacacaaaatcaatgactatgacagtta 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tatgtatatatttttactcccacgtacacaaaatcaatgactatgacagtta 221


 Score =  210 bits (106), Expect = 2e-54
 Identities = 120/127 (94%)
 Strand = Plus / Plus

                                                                       
Query: 620 attttataaataacaatactaaacatcaaattgtaataattttaaatatttgtaacactn 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 620 attttataaataacaatactaaacatcaaattgtaataattttaaatatttgtaacacta 679

                                                                       
Query: 680 nnnnnncattgtaatatcaatatacatataaaatgactattattaaatcaattacttcaa 739
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaaacattgtaatatcaatatacatataaaatgactattattaaatcaattacttcaa 739

                  
Query: 740 taaactc 746
           |||||||
Sbjct: 740 taaactc 746


 Score =  178 bits (90), Expect = 8e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 801 ttcgaatcaaacaaaaaataacataactgtgaatatgggtgttttaatttgtgcaaacgg 860
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcgaatcaaacaaaaaataacataactgtgaatatgggtgttttaatttgtgcaaacgg 860

                                         
Query: 861 tggtggttgtaacattatgtaattccaaat 890
           ||||||||||||||||||||||||||||||
Sbjct: 861 tggtggttgtaacattatgtaattccaaat 890


 Score = 79.8 bits (40), Expect = 5e-15
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 919 tcaaaaacaaaactttaaatttaaataaacccaaccagac 958
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tcaaaaacaaaactttaaatttaaataaacccaaccagac 958


 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 1  cacaataacaataacaacaaccacaaacctacacac 36
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  cacaataacaataacaacaaccacaaacctacacac 36


>Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Contig-U05483-1Q.Seq.d
          Length = 1064

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 2   acaataacaataacaacaaccacaa 26
           |||||||||||||||||||| ||||
Sbjct: 140 acaataacaataacaacaacaacaa 164


 Score = 34.2 bits (17), Expect = 0.29
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 2   acaataacaataacaacaaccacaa 26
           |||||||||||||||| ||| ||||
Sbjct: 134 acaataacaataacaataacaacaa 158


>Contig-U14176-1 (Contig-U14176-1Q) /CSM_Contig/Contig-U14176-1Q.Seq.d
          Length = 1253

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   acaataacaataacaacaac 21
           ||||||||||||||||||||
Sbjct: 142 acaataacaataacaacaac 161


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,477
Number of Sequences: 6905
Number of extensions: 19477
Number of successful extensions: 2716
Number of sequences better than 10.0: 384
length of query: 1041
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1025
effective length of database: 5,564,391
effective search space: 5703500775
effective search space used: 5703500775
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Contig-U01910-1Q.Seq.d
         (1041 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   174   0.0    9
(AU074385) Dictyostelium discoideum slug cDNA, clone SSK546.      174   1e-94  3
(C94211) Dictyostelium discoideum slug cDNA, clone SSK546.        125   4e-67  3
(AU072715) Dictyostelium discoideum slug cDNA, clone SSA585.      111   3e-49  3
(AC014887) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    50   0.021  2
(CU633615) Zebrafish DNA sequence from clone CH1073-120P15 i...    38   0.030  2
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    38   0.042  7
(CT030709) Mouse DNA sequence from clone RP23-268C22 on chro...    52   0.044  1
(AC160124) Mus musculus BAC clone RP23-297P22 from chromosom...    52   0.044  1
(AC185335) Nasonia vitripennis  BAC NV_Bb-46A1 (Clemson Univ...    52   0.044  1
(AC178336) Strongylocentrotus purpuratus clone R3-1114G16, W...    52   0.044  1
(CR136304) Reverse strand read from insert in 5'HPRT inserti...    52   0.044  1
(AG357935) Mus musculus molossinus DNA, clone:MSMg01-157H08....    52   0.044  1
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    42   0.052  6
(AC128182) Rattus norvegicus clone CH230-432N17, WORKING DRA...    42   0.053  5
(CR848667) Zebrafish DNA sequence from clone CH211-257P13 in...    50   0.17   1
(BX324145) Zebrafish DNA sequence from clone CH211-207C13 in...    50   0.17   1
(AL953915) Zebrafish DNA sequence from clone CH211-210F6.          50   0.17   1
(AC188091) Mus musculus chromosome 10 clone RP24-130O14, com...    50   0.17   1
(AC186813) Mus musculus BAC clone CH25-78M18 from chromosome...    50   0.17   1
(AC121142) Mus musculus chromosome 10, clone RP23-479G23, co...    50   0.17   1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    50   0.17   1
(AC008189) Drosophila melanogaster, chromosome 3R, region 82...    50   0.17   1
(CZ487950) f05389-3prime Exelixis piggyBac WH insertions Dro...    50   0.17   1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   0.32   2
(BQ834729) Po_ad_02G05_TEXF1 Psoroptes ovis mixed Psoroptes ...    38   0.66   2
(CT573204) Zebrafish DNA sequence from clone CH73-186J5 in l...    48   0.68   1
(BX927240) Zebrafish DNA sequence from clone DKEY-16N13 in l...    48   0.68   1
(AC162783) Danio rerio clone CH211-193C7, WORKING DRAFT SEQU...    48   0.68   1
(AC132547) Rattus norvegicus clone CH230-29J21, WORKING DRAF...    48   0.68   1
(AC129161) Rattus norvegicus clone CH230-184M10, *** SEQUENC...    48   0.68   1
(AC128256) Rattus norvegicus clone CH230-471L20, WORKING DRA...    48   0.68   1
(AC123301) Rattus norvegicus clone CH230-381O23, *** SEQUENC...    48   0.68   1
(AC105869) Rattus norvegicus clone CH230-121M14, *** SEQUENC...    48   0.68   1
(AC097762) Rattus norvegicus clone CH230-45I8, WORKING DRAFT...    48   0.68   1
(FP236646) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.68   1
(FI199503) CccaBa023-I18TV CccABa Cajanus cajan genomic clon...    48   0.68   1
(AL354854) Human DNA sequence from clone RP11-572H4 on chrom...    46   0.99   6
(AL035476) Plasmodium falciparum MAL4P3.                           36   1.3    8
(CT573157) Zebrafish DNA sequence from clone CH73-1M18 in li...    36   1.4    2
(EU642505) Brassica oleracea var. alboglabra clone BoB029L16...    32   1.5    2
(AM470769) Vitis vinifera contig VV78X065619.12, whole genom...    42   1.8    2
(DU698097) Bst030627 lambda03 Boechera stricta genomic clone...    32   1.8    2
(BH998238) oed82b02.b1 B.oleracea002 Brassica oleracea genom...    32   1.9    2
(AC107690) Mus musculus chromosome 3, clone RP24-349N15, com...    42   1.9    3
(BJ363024) Dictyostelium discoideum cDNA clone:ddc24l13, 5' ...    40   2.1    2
(ER816339) PPTAF56TR Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.3    2
(AL840637) Mouse DNA sequence from clone RP23-113H3 on chrom...    46   2.7    1
(AL807830) Mouse DNA sequence from clone RP23-303I9 on chrom...    46   2.7    1
(AC138270) Mus musculus chromosome 7, clone RP23-323F17, com...    46   2.7    1
(AC113507) Mus musculus chromosome 3, clone RP23-376O10, com...    46   2.7    1
(AC170743) Sorex araneus clone SA_Ba-619E1, complete sequence.     46   2.7    1
(AC116309) Homo sapiens chromosome 5 clone RP11-106J9, compl...    46   2.7    1
(AC012312) Homo sapiens chromosome 5 clone CTC-558O19, compl...    46   2.7    1
(AC131512) Strongylocentrotus purpuratus clone Sp83N11, *** ...    46   2.7    1
(AC106735) Homo sapiens chromosome 5 clone CTD-2380K8, WORKI...    46   2.7    1
(AC100816) Homo sapiens chromosome 17 clone CTD-2548D1 map 1...    46   2.7    1
(CU896695) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.7    1
(AC027321) Homo sapiens chromosome 5 clone CTD-2019H24, WORK...    46   2.7    1
(AC027303) Homo sapiens chromosome 5 clone CTB-100B21, WORKI...    46   2.7    1
(AC204566) Zea mays chromosome 10 clone CH201-373O16; ZMMBBc...    46   2.7    1
(AC200222) Zea mays chromosome 10 clone CH201-575P14; ZMMBBc...    46   2.7    1
(AC174258) Strongylocentrotus purpuratus clone R3-1113M23, W...    46   2.7    1
(AC022772) Homo sapiens chromosome 17 clone RP11-377K21 map ...    46   2.7    1
(AC008932) Homo sapiens chromosome 5 clone CTD-2296H2, WORKI...    46   2.7    1
(FH348494) CHO_OF4652xe05r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.7    1
(ET832325) CHO_OF808xp07r1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.7    1
(CT403338) Sus scrofa genomic clone CH242-157I17, genomic su...    46   2.7    1
(CR230891) Reverse strand read from insert in 5'HPRT inserti...    46   2.7    1
(CG045735) PUFUY38TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.7    1
(CG045733) PUFUY38TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.7    1
(CC265647) CH261-133E22_Sp6.1 CH261 Gallus gallus genomic cl...    46   2.7    1
(B72653) RPCI11-9O11.TV RPCI-11 Homo sapiens genomic clone R...    46   2.7    1
(EH281909) 1_44_PT7_F12_F12_12.ab1 Zebrafish cornea Danio re...    46   2.7    1
(EE064402) C2B02196 Buds/little clusters (VvC2) Vitis vinife...    46   2.7    1
(EC752771) PPE00009539 Agencourt Biosciences Agen-0020 Non-n...    46   2.7    1
(AV264510) Mus musculus adult male testis cDNA, RIKEN full-l...    46   2.7    1
(DR386081) RTHG1_12_G05.g1_A029 Roots plus added mercury Pin...    46   2.7    1
(DR386010) RTHG1_12_G05.b1_A029 Roots plus added mercury Pin...    46   2.7    1
(DR071603) RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA...    46   2.7    1
(DN958183) USDA-FP/ARO_14013 Star Ruby grapefruit hot water-...    46   2.7    1
(CX793777) JGI_CAAJ679.rev NIH_XGC_tropBrn2 Xenopus (Siluran...    46   2.7    1
(CO158939) FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA...    46   2.7    1
(CD009077) VVB100B04_339673 An expressed sequence tag databa...    46   2.7    1
(BX678600) Pinus pinaster root EST, clone RS11G06.                 46   2.7    1
(FE521308) mat2921387 Radiata pine juvenile latewood cDNA li...    46   2.7    1
(FE520362) li0676594 Radiata pine juvenile latewood cDNA lib...    46   2.7    1
(AU073810) Dictyostelium discoideum slug cDNA, clone SSI421.       40   2.7    2
(DY305553) KN0AAM1BF09RM1 SLH Citrus sinensis cDNA 5', mRNA ...    40   3.1    2
(BJ359373) Dictyostelium discoideum cDNA clone:ddc14j05, 5' ...    40   3.2    2
(BX168148) Danio rerio genomic clone DKEY-150A20, genomic su...    36   3.4    3
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...    34   3.7    4
(AL109815) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    40   3.8    5
(DR391730) USDA-FP_151662 Adult Alate Aphis gossypii (WHAGA)...    42   3.9    2
(CU928204) Zebrafish DNA sequence from clone CH73-193M8 in l...    38   4.5    2
(AC222142) Bos taurus clone CH240-36N6, WORKING DRAFT SEQUEN...    34   4.9    2
(AC222502) Bos taurus clone CH240-41P6, WORKING DRAFT SEQUEN...    34   4.9    2
(AC222767) Bos taurus clone CH240-43C8, WORKING DRAFT SEQUEN...    34   4.9    2
(AC099447) Rattus norvegicus clone CH230-203H4, WORKING DRAF...    34   5.0    2
(AC112468) Rattus norvegicus clone CH230-129B6, WORKING DRAF...    34   5.0    2
(BJ324349) Dictyostelium discoideum cDNA clone:dda5k21, 5' e...    40   5.1    2
(BJ362177) Dictyostelium discoideum cDNA clone:ddc20j16, 5' ...    40   5.1    2
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    32   5.1    2
(CU469257) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.1    3
(FE929226) NPAD-aaa30g07.b2 N.brasiliensis_NPAD1_EST_L3N Nip...    34   5.1    2
(BJ387861) Dictyostelium discoideum cDNA clone:dds5b13, 5' e...    40   5.2    2
(AX345331) Sequence 402 from Patent WO0200928.                     38   5.3    2
(AC155105) Bos taurus clone CH240-36N6, *** SEQUENCING IN PR...    34   5.3    2
(AC155135) Bos taurus clone CH240-41P6, *** SEQUENCING IN PR...    34   5.4    2
(BF106420) 601823261F1 NIH_MGC_77 Homo sapiens cDNA clone IM...    38   5.4    2
(BJ409819) Dictyostelium discoideum cDNA clone:ddv10k03, 5' ...    40   5.5    2
(DR391856) USDA-FP_151788 Adult Alate Aphis gossypii (WHAGA)...    42   5.5    2
(BJ412707) Dictyostelium discoideum cDNA clone:ddv9g13, 5' e...    40   5.5    2
(BJ390594) Dictyostelium discoideum cDNA clone:dds23b05, 5' ...    40   5.6    2
(BJ390883) Dictyostelium discoideum cDNA clone:dds14h02, 5' ...    40   5.6    2
(BJ328489) Dictyostelium discoideum cDNA clone:dda28k07, 5' ...    40   5.6    2
(BJ417501) Dictyostelium discoideum cDNA clone:ddv30g20, 5' ...    40   5.7    2
(BJ388011) Dictyostelium discoideum cDNA clone:dds7l08, 5' e...    40   5.7    2
(BX321904) Zebrafish DNA sequence from clone DKEY-279K15 in ...    38   5.7    3
(BJ362448) Dictyostelium discoideum cDNA clone:ddc21f21, 5' ...    40   5.7    2
(BJ361536) Dictyostelium discoideum cDNA clone:ddc17i13, 5' ...    40   5.7    2
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    38   5.8    8
(CT998546) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.8    4
(BJ388559) Dictyostelium discoideum cDNA clone:dds6m04, 5' e...    40   5.8    2
(BJ389034) Dictyostelium discoideum cDNA clone:dds17p03, 5' ...    40   5.9    2
(BJ363718) Dictyostelium discoideum cDNA clone:ddc28j01, 5' ...    40   5.9    2
(BJ363219) Dictyostelium discoideum cDNA clone:ddc25i17, 5' ...    40   6.0    2
(BJ387242) Dictyostelium discoideum cDNA clone:dds1c01, 5' e...    40   6.1    2
(BJ363171) Dictyostelium discoideum cDNA clone:ddc25m07, 5' ...    40   6.1    2
(BJ362227) Dictyostelium discoideum cDNA clone:ddc20k19, 5' ...    40   6.1    2
(BJ360775) Dictyostelium discoideum cDNA clone:ddc7f21, 5' e...    40   6.2    2
(BJ359282) Dictyostelium discoideum cDNA clone:ddc13o16, 5' ...    40   6.2    2
(BJ414065) Dictyostelium discoideum cDNA clone:ddv17o22, 5' ...    40   6.2    2
(BJ361707) Dictyostelium discoideum cDNA clone:ddc18l07, 5' ...    40   6.2    2
(BJ414865) Dictyostelium discoideum cDNA clone:ddv20n13, 5' ...    40   6.2    2
(BJ415646) Dictyostelium discoideum cDNA clone:ddv23b07, 5' ...    40   6.3    2
(BJ360172) Dictyostelium discoideum cDNA clone:ddc4a24, 5' e...    40   6.3    2
(BJ360062) Dictyostelium discoideum cDNA clone:ddc4c04, 5' e...    40   6.3    2
(BJ417075) Dictyostelium discoideum cDNA clone:ddv29h09, 5' ...    40   6.3    2
(BJ391147) Dictyostelium discoideum cDNA clone:dds15g07, 5' ...    40   6.3    2
(BJ412989) Dictyostelium discoideum cDNA clone:ddv13a20, 5' ...    40   6.3    2
(BJ411881) Dictyostelium discoideum cDNA clone:ddv6n03, 5' e...    40   6.3    2
(BJ413043) Dictyostelium discoideum cDNA clone:ddv13p24, 5' ...    40   6.3    2
(BJ363526) Dictyostelium discoideum cDNA clone:ddc27l01, 5' ...    40   6.3    2
(BJ361185) Dictyostelium discoideum cDNA clone:ddc16h04, 5' ...    40   6.3    2
(BJ417526) Dictyostelium discoideum cDNA clone:ddv30l19, 5' ...    40   6.5    2
(CS604573) Sequence 3559 from Patent WO2007039234.                 32   6.5    2
(CS602925) Sequence 1911 from Patent WO2007039234.                 32   6.5    2
(BJ358653) Dictyostelium discoideum cDNA clone:ddc10m18, 5' ...    40   6.5    2
(BJ328017) Dictyostelium discoideum cDNA clone:dda22i17, 5' ...    40   6.7    2
(BJ415916) Dictyostelium discoideum cDNA clone:ddv24m02, 5' ...    40   6.7    2
(BJ359352) Dictyostelium discoideum cDNA clone:ddc14b05, 5' ...    40   6.9    2
(BJ414734) Dictyostelium discoideum cDNA clone:ddv20b12, 5' ...    40   6.9    2
(BH554537) BOHLC91TR BOHL Brassica oleracea genomic clone BO...    34   7.0    2
(BJ362301) Dictyostelium discoideum cDNA clone:ddc21p06, 5' ...    40   7.0    2
(BJ360674) Dictyostelium discoideum cDNA clone:ddc7d10, 5' e...    40   7.0    2
(BJ411505) Dictyostelium discoideum cDNA clone:ddv4p13, 5' e...    40   7.0    2
(BJ388082) Dictyostelium discoideum cDNA clone:dds7f23, 5' e...    40   7.1    2
(DX522944) GH_MBb0076P08r GH_MBb Gossypium hirsutum genomic ...    34   7.1    3
(BJ391580) Dictyostelium discoideum cDNA clone:dds24o12, 5' ...    40   7.2    2
(AX347142) Sequence 2213 from Patent WO0200928.                    42   7.3    2
(BJ390197) Dictyostelium discoideum cDNA clone:dds21b13, 5' ...    40   7.4    2
(AP004249) Homo sapiens genomic DNA, chromosome 11q clone:RP...    42   8.2    3
(AC141795) Apis mellifera clone CH224-60D3, WORKING DRAFT SE...    40   8.7    3
(FH473412) CHO_OF4985xb22r1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   9.0    2
(AX346773) Sequence 1844 from Patent WO0200928.                    32   9.7    3

>(AC116979) Dictyostelium discoideum chromosome 2 map 6445720-6776760
              strain AX4, complete sequence.
          Length = 331039

 Score =  174 bits (88), Expect(9) = 0.0
 Identities = 88/88 (100%)
 Strand = Plus / Plus


Query: 134    cattaaaagtatttttattggtgtaaaatagtataatatgtatatatttttactcccacg 193
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214686 cattaaaagtatttttattggtgtaaaatagtataatatgtatatatttttactcccacg 214745


Query: 194    tacacaaaatcaatgactatgacagtta 221
              ||||||||||||||||||||||||||||
Sbjct: 214746 tacacaaaatcaatgactatgacagtta 214773

 Score =  153 bits (77), Expect(9) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Plus


Query: 50     tagcacatgattttaataatatcaatcttattacacatcttgacattatctatataatac 109
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214602 tagcacatgattttaataatatcaatcttattacacatcttgacattatctatataatac 214661


Query: 110    atttttagttaatttat 126
              |||||||||||||||||
Sbjct: 214662 atttttagttaatttat 214678

 Score =  125 bits (63), Expect(9) = 0.0
 Identities = 63/63 (100%)
 Strand = Plus / Plus


Query: 828    tgtgaatatgggtgttttaatttgtgcaaacggtggtggttgtaacattatgtaattcca 887
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215534 tgtgaatatgggtgttttaatttgtgcaaacggtggtggttgtaacattatgtaattcca 215593


Query: 888    aat 890
              |||
Sbjct: 215594 aat 215596

 Score =  117 bits (59), Expect(9) = 0.0
 Identities = 59/59 (100%)
 Strand = Plus / Plus


Query: 620    attttataaataacaatactaaacatcaaattgtaataattttaaatatttgtaacact 678
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215227 attttataaataacaatactaaacatcaaattgtaataattttaaatatttgtaacact 215285

 Score =  107 bits (54), Expect(9) = 0.0
 Identities = 54/54 (100%)
 Strand = Plus / Plus


Query: 428    attcttaaacccaatttcgttcagttataaaattgaattaaccatttcttattt 481
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214983 attcttaaacccaatttcgttcagttataaaattgaattaaccatttcttattt 215036

 Score = 73.8 bits (37), Expect(9) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Plus


Query: 686    cattgtaatatcaatatacatataaaatgactattat 722
              |||||||||||||||||||||||||||||||||||||
Sbjct: 215293 cattgtaatatcaatatacatataaaatgactattat 215329

 Score = 71.9 bits (36), Expect(9) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 1      cacaataacaataacaacaaccacaaacctacacac 36
              ||||||||||||||||||||||||||||||||||||
Sbjct: 214553 cacaataacaataacaacaaccacaaacctacacac 214588

 Score = 71.9 bits (36), Expect(9) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 276    gataatggatacaaccacacgcattatttatacttt 311
              ||||||||||||||||||||||||||||||||||||
Sbjct: 214831 gataatggatacaaccacacgcattatttatacttt 214866

 Score = 44.1 bits (22), Expect(9) = 0.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus


Query: 324    atccaaattgtttaatcgcaca 345
              ||||||||||||||||||||||
Sbjct: 214879 atccaaattgtttaatcgcaca 214900

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 649,416,054
Number of extensions: 46119911
Number of successful extensions: 4172038
Number of sequences better than 10.0: 167
Length of query: 1041
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1017
Effective length of database: 99,340,224,878
Effective search space: 101029008700926
Effective search space used: 101029008700926
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Contig-U01910-1Q.Seq.d
         (1041 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_64(AC116979|pid:none) Dictyostelium discoideum chromoso...    53   2e-05
AX647657_1(AX647657|pid:none) Sequence 1849 from Patent EP1270724.     30   7.1

>AC116979_64(AC116979|pid:none) Dictyostelium discoideum chromosome
           2 map 6445720-6776760 strain AX4, complete sequence.
          Length = 58

 Score = 53.1 bits (126), Expect = 2e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +1

Query: 808 QTKNNITVNMGVLICANGGGCNIM 879
           QTKNNITVNMGVLICANGGGCNI+
Sbjct: 33  QTKNNITVNMGVLICANGGGCNII 56

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 912,968,228
Number of extensions: 11695126
Number of successful extensions: 33509
Number of sequences better than 10.0: 2
Number of HSP's gapped: 33501
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 218
Effective length of database: 633,664,753
Effective search space: 138138916154
Effective search space used: 138138916154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.20  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U01910-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0