NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12231-1
Contig ID Contig-U12231-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Contig-U12231-1Q.Seq.d
AAAATAAAAAAAAAAAGTAAAGATAATAAAAAAAAAAAAAAAAAAACTAA
TTCACATATACATAATATATATTGTATAGGAGTAATACAGTATGGGTATC
AATTTTAGTTGTCTACCCGATTATAGTGGACAAACTGGTGATCAAGACAA
TTCTAAACCAAATAAACCTATAGCGTTTATAGATGCAACTGAACAAGTTT
CTAAACCAAAGGTTTCAACATTAGATAAATTTGATTTTGATGATGAAAAA
GATATAAACCCAAAATCAATTTCACAAACTAAAACAGATAATAATAATAA
AAATAATAATAATAATAAAGTAACAACTACAAATAATAATAATAATAATA
ATAATAATAATA----------ACGAAAATGAAAATAAAGTAACAGTTGA
CCTTAGTAATGTTCCATTAAGTGCACCAGCAAAATCAGCAATGACATTAG
GAGGTTTAAAAAAACAATTACCTTTAAAACCAACATTAACAGAAGAACAA
ATTAAAGAATTACAATTAAAAAATAAAACTTTAATTGAAAAACAAAGCCA
ACAACCATCACAACAACAACCACATCAACCACAACAACAATATATATCAC
CAGAGAAACAAGCATCAATTGAAACACCAAATAAAATTAAATTTTCAAAT
AATGAAGACACATTCAATAATACAAGTTACACTCAACCAGAAGGTGATTG
GGATAACGATGATGATATAACATTTGATGATGATAATATAATTGATAATT
TAGATCAACAACAACAACAACAACAACAACAACAACAACAACAATTAGAA
GAAAAAGAAGAAAAAGAAGAAAAAGAAGTAGTAAGAGAAGTTTTTATACC
AACACCTAAAAAATCAACAATCATTTGGAATGATGATGATGATGGTTTTG
GTGAATAAATAATTAAATTTTGTACAAAAATAAAAATAAATAAAAAGAAT
ATTAATAAAATAAAAA
Gap gap included
Contig length 956
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4032934
End point 4033876
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U12231
List of clone(s) 

est1=SSF746F,1,363
est2=SSF746Z,364,958
est3=VSH271Z,553,868
Translated Amino Acid sequence 
k*kkkvkiikkkkkklihiyiiyiv*e*YSMGINFSCLPDYSGQTGDQDNSKPNKPIAFI
DATEQVSKPKVSTLDKFDFDDEKDINPKSISQTKTDNNNKNNNNNKVTTTNNNNNNNNNN
---

---ENENKVTVDLSNVPLSAPAKSAMTLGGLKKQLPLKPTLTEEQIKELQLKNKTLIEKQ
SQQPSQQQPHQPQQQYISPEKQASIETPNKIKFSNNEDTFNNTSYTQPEGDWDNDDDITF
DDDNIIDNLDQQQQQQQQQQQQQLEEKEEKEEKEVVREVFIPTPKKSTIIWNDDDDGFGE
*iikfctkikinkkninkik
Translated Amino Acid sequence (All Frames) 
Frame A:
kikkkskdnkkkkkktnshihniycigviqygyqf*lstrl*wtnw*srqf*tk*tysvy
rcn*tsf*tkgfnir*i*f***krykpkinftn*nr****k*****snnyk*********
---

---tkmkik*qltlvmfh*vhqqnqq*h*ev*knnyl*nqh*qknklknyn*kikl*lkn
kannhhnnnhinhnnniyhqrnkhqlkhqiklnfqimkthsiiqvtlnqkvigitmmi*h
lmmii*lii*innnnnnnnnnnnn*kkkkkkkkkk**ekflyqhlknqqsfgmmmmmvlv
nk*lnfvqk*k*ikrilik*k

Frame B:
k*kkkvkiikkkkkklihiyiiyiv*e*YSMGINFSCLPDYSGQTGDQDNSKPNKPIAFI
DATEQVSKPKVSTLDKFDFDDEKDINPKSISQTKTDNNNKNNNNNKVTTTNNNNNNNNNN
---

---rk*k*sns*p**csikctskisndirrfkktitfktninrrtn*ritikk*nfn*kt
kpttitttttsttttiyitretsin*ntk*n*ifk**rhiq*yklhstrr*lg*r**yni
****yn**frsttttttttttttirrkrrkrrkrsskrsfytnt*kinnhle****wfw*
inn*ilyknknk*key**nk

Frame C:
nkkkk*r**kkkkkn*ftyt*yilyrsntvwvsilvvypiivdklviktilnqinl*rl*
mqlnkflnqrfqh*inlilmmkki*tqnqfhklkqiiiikiiiiik*qlqiiiiiiiiii
---

---ENENKVTVDLSNVPLSAPAKSAMTLGGLKKQLPLKPTLTEEQIKELQLKNKTLIEKQ
SQQPSQQQPHQPQQQYISPEKQASIETPNKIKFSNNEDTFNNTSYTQPEGDWDNDDDITF
DDDNIIDNLDQQQQQQQQQQQQQLEEKEEKEEKEVVREVFIPTPKKSTIIWNDDDDGFGE
*iikfctkikinkkninkik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12231-1 (Contig-U12231-1Q)
/CSM_Contig/Contig-U12231-1Q.Seq.d
         (966 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Conti...   478  e-135
Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Conti...   149  7e-36
Contig-U06507-1 (Contig-U06507-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13612-1 (Contig-U13612-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09043-1 (Contig-U09043-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U05646-1 (Contig-U05646-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04139-1 (Contig-U04139-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U11355-1 (Contig-U11355-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U08780-1 (Contig-U08780-1Q) /CSM_Contig/Conti...    38  0.017

>Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Contig-U12231-1Q.Seq.d
          Length = 966

 Score =  478 bits (241), Expect = e-135
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 47  ctaattcacatatacataatatatattgtataggagtaatacagtatgggtatcaatttt 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ctaattcacatatacataatatatattgtataggagtaatacagtatgggtatcaatttt 106

                                                                       
Query: 107 agttgtctacccgattatagtggacaaactggtgatcaagacaattctaaaccaaataaa 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agttgtctacccgattatagtggacaaactggtgatcaagacaattctaaaccaaataaa 166

                                                                       
Query: 167 cctatagcgtttatagatgcaactgaacaagtttctaaaccaaaggtttcaacattagat 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cctatagcgtttatagatgcaactgaacaagtttctaaaccaaaggtttcaacattagat 226

                                                                       
Query: 227 aaatttgattttgatgatgaaaaagatataaacccaaaatcaatttcacaaactaaaaca 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aaatttgattttgatgatgaaaaagatataaacccaaaatcaatttcacaaactaaaaca 286

            
Query: 287 g 287
           |
Sbjct: 287 g 287


 Score =  327 bits (165), Expect = 1e-89
 Identities = 165/165 (100%)
 Strand = Plus / Plus

                                                                       
Query: 591 tatatatcaccagagaaacaagcatcaattgaaacaccaaataaaattaaattttcaaat 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tatatatcaccagagaaacaagcatcaattgaaacaccaaataaaattaaattttcaaat 650

                                                                       
Query: 651 aatgaagacacattcaataatacaagttacactcaaccagaaggtgattgggataacgat 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aatgaagacacattcaataatacaagttacactcaaccagaaggtgattgggataacgat 710

                                                        
Query: 711 gatgatataacatttgatgatgataatataattgataatttagat 755
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gatgatataacatttgatgatgataatataattgataatttagat 755


 Score =  202 bits (102), Expect = 5e-52
 Identities = 116/123 (94%)
 Strand = Plus / Plus

                                                                       
Query: 373 acgaaaatgaaaataaagtaacagttgaccttagtaatgttccattaagtgcaccagcaa 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acgaaaatgaaaataaagtaacagttgaccttagtaatgttccattaagtgcaccagcaa 432

                                                                       
Query: 433 aatcagcaatgacattaggaggtttnnnnnnncaattacctttaaaaccaacattaacag 492
           |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 433 aatcagcaatgacattaggaggtttaaaaaaacaattacctttaaaaccaacattaacag 492

              
Query: 493 aag 495
           |||
Sbjct: 493 aag 495


 Score =  149 bits (75), Expect = 7e-36
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                       
Query: 829 tagtaagagaagtttttataccaacacctaaaaaatcaacaatcatttggaatgatgatg 888
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tagtaagagaagtttttataccaacacctaaaaaatcaacaatcatttggaatgatgatg 888

                          
Query: 889 atgatggttttggtg 903
           |||||||||||||||
Sbjct: 889 atgatggttttggtg 903


>Contig-U14907-1 (Contig-U14907-1Q) /CSM_Contig/Contig-U14907-1Q.Seq.d
          Length = 422

 Score =  149 bits (75), Expect = 7e-36
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                       
Query: 829 tagtaagagaagtttttataccaacacctaaaaaatcaacaatcatttggaatgatgatg 888
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tagtaagagaagtttttataccaacacctaaaaaatcaacaatcatttggaatgatgatg 340

                          
Query: 889 atgatggttttggtg 903
           |||||||||||||||
Sbjct: 341 atgatggttttggtg 355


>Contig-U06507-1 (Contig-U06507-1Q) /CSM_Contig/Contig-U06507-1Q.Seq.d
          Length = 483

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 722 atttgatgatgataatataatt 743
           ||||||||||||||||||||||
Sbjct: 245 atttgatgatgataatataatt 224


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,950
Number of Sequences: 6905
Number of extensions: 15950
Number of successful extensions: 3512
Number of sequences better than 10.0: 522
length of query: 966
length of database: 5,674,871
effective HSP length: 16
effective length of query: 950
effective length of database: 5,564,391
effective search space: 5286171450
effective search space used: 5286171450
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Contig-U12231-1Q.Seq.d
         (966 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93076) Dictyostelium discoideum slug cDNA, clone SSF746.        206   e-122  3
(AU073031) Dictyostelium discoideum slug cDNA, clone SSF746.      385   e-102  1
(AU267174) Dictyostelium discoideum vegetative cDNA clone:VS...   206   3e-63  2
(AU269830) Dictyostelium discoideum vegetative cDNA clone:VS...   125   3e-24  1
(AU269831) Dictyostelium discoideum vegetative cDNA clone:VS...    70   4e-12  2
(AC187965) Canis Familiaris, clone XX-97G9, complete sequence.     50   0.16   1
(CE635784) tigr-gss-dog-17000366748820 Dog Library Canis lup...    50   0.16   1
(AC189024) Rhesus macaque BAC clone CH250-84H12 from chromos...    36   0.35   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.38   13
(EB197890) PEG001-C-006317-301 Non-Normalized Pedal-Pleural ...    38   0.55   2
(DY885557) CeleSEQ845 Cunninghamella elegans pBluescript (Ec...    42   0.58   2
(EC925885) WIN0210.TB24.1_F14 Cab Sauv flower, leaf and root...    48   0.62   1
(AM180355) Clostridium difficile 630 complete genome.              48   0.62   1
(AC180997) Strongylocentrotus purpuratus clone R3-3058A5, WO...    44   0.84   5
(CU928374) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.5    4
(CV840210) ID0ADD12DD05RM1 ID0ADD Acyrthosiphon pisum cDNA c...    42   2.0    2
(CV839412) ID0ADD10DF12RM1 ID0ADD Acyrthosiphon pisum cDNA c...    42   2.1    2
(AL583742) Human chromosome 14 DNA sequence BAC R-318A9 of l...    40   2.3    6
(AC109637) Homo sapiens BAC clone RP11-325A18 from 2, comple...    46   2.4    2
(CU207293) Mouse DNA sequence from clone WI1-632G16 on chrom...    46   2.5    1
(AL845485) Mouse DNA sequence from clone RP23-237D23 on chro...    46   2.5    1
(AC140433) Mus musculus BAC clone RP23-96L16 from chromosome...    46   2.5    1
(AC121818) Mus musculus BAC clone RP23-459J16 from chromosom...    46   2.5    1
(AC116459) Mus musculus, clone RP23-35F4, complete sequence.       46   2.5    1
(AY286122) Cyanidioschyzon merolae DBV201 chromosome 1, comp...    46   2.5    1
(AP006483) Cyanidioschyzon merolae DNA, chromosome 1, comple...    46   2.5    1
(AM472007) Vitis vinifera contig VV78X268914.11, whole genom...    46   2.5    1
(DJ051139) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    46   2.5    1
(DI107068) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M...    46   2.5    1
(CS083997) Sequence 180 from Patent WO2005040377.                  46   2.5    1
(AL359986) Human DNA sequence from clone RP11-106M14 on chro...    46   2.5    1
(AC107030) Homo sapiens 3 BAC RP11-603J22 (Roswell Park Canc...    46   2.5    1
(AC144793) Mus musculus chromosome UNK clone RP24-423E11, WO...    46   2.5    1
(EU875592) Branchiostoma floridae clone Bac 100J9, *** SEQUE...    46   2.5    1
(AC073164) Homo sapiens chromosome 3 clone RP11-359D24, WORK...    46   2.5    1
(AC068386) Homo sapiens chromosome 3 clone RP11-603J22 map 3...    46   2.5    1
(CU207326) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    46   2.5    1
(CU041229) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    46   2.5    1
(BH369042) AG-ND-130O3.TF ND-TAM Anopheles gambiae genomic c...    46   2.5    1
(AZ704828) RPCI-23-237D23.TJ RPCI-23 Mus musculus genomic cl...    46   2.5    1
(AQ975868) RPCI-23-337P22.TJ RPCI-23 Mus musculus genomic cl...    46   2.5    1
(FH647668) CHO_OF4991xk13f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.5    1
(ER475674) 1093015232375 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.5    1
(EK413398) 1095505216765 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(EK315734) 1095462412464 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.5    1
(EJ225257) 1092351409562 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.5    1
(EI317145) GM_WBc0050O01.r GM_WBc Glycine max genomic clone ...    46   2.5    1
(DE329214) Bombyx mori genomic DNA, BAC clone:BES_654_G15.         46   2.5    1
(CT561532) A BAC library has been constructed from cultivar ...    46   2.5    1
(EL339339) EB3RODY02FO1CW 8-day Arabidopsis seedlings, aeria...    46   2.5    1
(EL252289) EB3RODY02G7MN5 8-day Arabidopsis seedlings, aeria...    46   2.5    1
(FG088312) CMRC-FF-IH0-ack-e-06-0-CMRC.r1 Ceratitis capitata...    46   2.5    1
(FG083373) UI-FF-IH0-abd-p-24-0-UI.r1 Ceratitis capitata adu...    46   2.5    1
(FG081331) UI-FF-IH0-aaw-o-18-0-UI.r1 Ceratitis capitata adu...    46   2.5    1
(FG079369) UI-FF-IH0-aar-c-01-0-UI.r1 Ceratitis capitata adu...    46   2.5    1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   2.5    8
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   4.0    6
(CU467977) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.6    2
(CT737242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.6    2
(AC171141) Helobdella robusta clone CH306-1B3, complete sequ...    32   4.8    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   5.6    8
(AC099578) Mus musculus chromosome 10, clone RP23-182D17, co...    42   5.7    3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   5.8    9
(EX653483) 256797778 Pea aphid whole body normalized full le...    38   5.9    2
(AM446855) Vitis vinifera, whole genome shotgun sequence, co...    42   6.0    2
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    36   6.1    4
(AC223955) Bos taurus clone CH240-453F4, WORKING DRAFT SEQUE...    38   6.1    3
(AC120908) Rattus norvegicus clone CH230-169F22, *** SEQUENC...    42   6.4    2
(EX649685) 256733742 Pea aphid whole body normalized full le...    38   6.7    2
(EX622199) 255418334 Pea aphid whole body normalized full le...    38   6.9    2
(EL418691) CHCL7105.b1_A02.ab1 CHC(LMS) Texas blueweed Helia...    40   6.9    2
(BH946232) obu92c12.g1 B.oleracea002 Brassica oleracea genom...    38   7.3    2
(AC178671) Strongylocentrotus purpuratus clone R3-3007E8, WO...    40   7.7    4
(AZ693353) ENTGX80TF Entamoeba histolytica Sheared DNA Entam...    42   8.1    2
(CL464341) SAIL_121_B08.v1 SAIL Collection Arabidopsis thali...    36   8.7    2
(CR383676) Zebrafish DNA sequence from clone CH211-276I12 in...    44   9.7    1
(BV449076) qmq58h09.g1 Clint Pan troglodytes verus STS genom...    44   9.7    1
(AL954328) Mouse DNA sequence from clone RP24-462B5 on chrom...    44   9.7    1
(AC171502) Mus musculus BAC clone RP23-242G4 from chromosome...    44   9.7    1
(AC164316) Mus musculus BAC clone RP23-16B4 from chromosome ...    44   9.7    1
(AC119655) Rattus norvegicus  BAC CH230-259N5 (Children's Ho...    44   9.7    1
(AC073297) Mus musculus strain C57BL6/J chromosome 6 clone R...    44   9.7    1
(AC155319) Pan troglodytes BAC clone CH251-770A15 from chrom...    44   9.7    1
(AC148941) Pan troglodytes BAC clone CH251-41G22 from chromo...    44   9.7    1
(AC148937) Pan troglodytes BAC clone CH251-485I7 from Y, com...    44   9.7    1
(AC148875) Pan troglodytes BAC clone CH251-198I11 from Y, co...    44   9.7    1
(AC147334) Pan troglodytes BAC clone CH251-372D20 from chrom...    44   9.7    1
(AC147127) Pan troglodytes BAC clone CH251-410H20 from Y, co...    44   9.7    1
(AM479479) Vitis vinifera contig VV78X033417.16, whole genom...    44   9.7    1
(AM462660) Vitis vinifera contig VV78X100182.5, whole genome...    44   9.7    1
(AM461917) Vitis vinifera contig VV78X116767.7, whole genome...    44   9.7    1
(AM451727) Vitis vinifera contig VV78X069552.4, whole genome...    44   9.7    1
(AL161585) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   9.7    1
(AL035521) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    44   9.7    1
(AL021961) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    44   9.7    1
(AC216699) Bos taurus  BAC CH240-160B11 (Children's Hospital...    44   9.7    1
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    44   9.7    1
(BX323845) Human DNA sequence from clone RP11-272G22 on chro...    44   9.7    1
(AC161017) Pan troglodytes chromosome Y clone CH251-157N1, W...    44   9.7    1
(AC135939) Rattus norvegicus clone CH230-441E18, *** SEQUENC...    44   9.7    1

>(C93076) Dictyostelium discoideum slug cDNA, clone SSF746.
          Length = 595

 Score =  206 bits (104), Expect(3) = e-122
 Identities = 104/104 (100%)
 Strand = Plus / Plus


Query: 591 tatatatcaccagagaaacaagcatcaattgaaacaccaaataaaattaaattttcaaat 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tatatatcaccagagaaacaagcatcaattgaaacaccaaataaaattaaattttcaaat 278


Query: 651 aatgaagacacattcaataatacaagttacactcaaccagaagg 694
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatgaagacacattcaataatacaagttacactcaaccagaagg 322

 Score =  168 bits (85), Expect(3) = e-122
 Identities = 85/85 (100%)
 Strand = Plus / Plus


Query: 373 acgaaaatgaaaataaagtaacagttgaccttagtaatgttccattaagtgcaccagcaa 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acgaaaatgaaaataaagtaacagttgaccttagtaatgttccattaagtgcaccagcaa 60


Query: 433 aatcagcaatgacattaggaggttt 457
           |||||||||||||||||||||||||
Sbjct: 61  aatcagcaatgacattaggaggttt 85

 Score =  125 bits (63), Expect(3) = e-122
 Identities = 63/63 (100%)
 Strand = Plus / Plus


Query: 841 tttttataccaacacctaaaaaatcaacaatcatttggaatgatgatgatgatggttttg 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttttataccaacacctaaaaaatcaacaatcatttggaatgatgatgatgatggttttg 528


Query: 901 gtg 903
           |||
Sbjct: 529 gtg 531

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 580,096,225
Number of extensions: 40285381
Number of successful extensions: 4935920
Number of sequences better than 10.0: 298
Length of query: 966
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 942
Effective length of database: 97,308,875,965
Effective search space: 91664961159030
Effective search space used: 91664961159030
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Contig-U12231-1Q.Seq.d
         (966 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 813,554,267
Number of extensions: 9790535
Number of successful extensions: 22936
Number of sequences better than 10.0: 0
Number of HSP's gapped: 22929
Number of HSP's successfully gapped: 0
Length of query: 322
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 194
Effective length of database: 636,901,312
Effective search space: 123558854528
Effective search space used: 123558854528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.35  alm: 0.52  top: 0.33  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U12231-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0