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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01905-1
Contig ID Contig-U01905-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01905-1 (Contig-U01905-1Q) /CSM_Contig/Contig-U01905-1Q.Seq.d
CATATTTCAAGATTTCAACATATTACACCCTCAAATTTAGATATCAATGA
TTCAATCATTTCAACACAATTCCTCGAACAAATTCAAGAGGAACTCTTAT
ACATTTCAATCTTCAAATCTCCACGTGAAAAATTAATGTGTATTAAAAAA
AGTTTTAAATTATTATTTCAATTACTTTCAAAAACTCAATTACCAAGTGT
TGTTGGTGCTGATTTATTATTACCAATAGTAATTTTTTGTTTAATAAAAT
CAAATTTACCATTTCTCTGGTCAAATTTACAATTTATATCATTATTTAGA
GATCCAACATTAATCGAGAGTGAAACAAATTATTTTTTAGTTACAATGAT
AACTGCAGCATCTTTCATTGAAAATATGACATTTGAATCTTTAACTGATG
CAGTCGATCCAAATGCACCACCAAAATCATCAGATGATAATATTATAATT
GAATCAAATAATATAGAAATCAATAAAGAGAAAATTGAAGAACAAAAAGA
AAATAATAATAATAATAATAATAATAAT----------ATAATAATACAT
TAGAACCAATTATTATAGATACTTTACAACAACATGAATCAAATAAATTG
GTTTCAGATAAAGAAATTGTTAATGAAAATGAAAGAGAAATAAAACATAG
TGCCTCTAGTAACGATACTGATAAAATGAAAATAGTGACCAACAATGCAA
CAGAAGAAGAAAAAAAAAAATTATTCAAATTTTATAATTCTAAACCTGAA
GAATTATCTGTCAAAGAAATTAAACAGCTTTTAAATGAATATAATTCTCT
AGTTGATAAATACTTTGAAACTAAATAATTATTTCATTAATGTAACCACA
CAATAAATTTTAATAATAATAATAATAATCCCATAAAAAAACAAAAGCGC
ATTGCCATTCTTCAACTTAAATTTAATAATTTACAAACCAAAACTTTTAA
TCAAAAAACAACACAAAATTTTACTAGAAAATAAAAAGAAAATTTTATTA
TTGGGGGGAACCCACCCACTTGTATTTTAAAAAAAAAA
Gap gap included
Contig length 1028
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1099928
End point 1100957
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01905
List of clone(s) 

est1=SSK475F,1,529
est2=VSF394E,249,503
est3=SSK475Z,530,1030
Translated Amino Acid sequence 
HISRFQHITPSNLDINDSIISTQFLEQIQEELLYISIFKSPREKLMCIKKSFKLLFQLLS
KTQLPSVVGADLLLPIVIFCLIKSNLPFLWSNLQFISLFRDPTLIESETNYFLVTMITAA
SFIENMTFESLTDAVDPNAPPKSSDDNIIIESNNIEINKEKIEEQKENNNNNNNNN---

---NNTLEPIIIDTLQQHESNKLVSDKEIVNENEREIKHSASSNDTDKMKIVTNNATEEE
KKKLFKFYNSKPEELSVKEIKQLLNEYNSLVDKYFETK*lfh*cnhtinfnnnnnnpikk
qkriailqlkfnnlqtktfnqkttqnftrk*kenfiiggnpptcilkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
HISRFQHITPSNLDINDSIISTQFLEQIQEELLYISIFKSPREKLMCIKKSFKLLFQLLS
KTQLPSVVGADLLLPIVIFCLIKSNLPFLWSNLQFISLFRDPTLIESETNYFLVTMITAA
SFIENMTFESLTDAVDPNAPPKSSDDNIIIESNNIEINKEKIEEQKENNNNNNNNN---

---iiih*nqll*ilynnmnqinwfqikkllmkmkek*nivplvtilik*k**ptmqqkk
kkknysnfiilnlknylskklnsf*mniil*lintlklnnyfinvttq*iliiiiiip*k
nksalpffnlnliiykpkllikkqhkillenkkkilllggthplvf*kk

Frame B:
ifqdfnilhpqi*ismiqsfqhnssnkfkrnsytfqssnlhvkn*cvlkkvlnyyfnyfq
klnyqvllvliyyyq**ffv**nqiyhfsgqiynlyhyleiqh*srvkqiif*lq**lqh
lslki*hlnl*lmqsiqmhhqnhqmiil*lnqii*ksikrklknkkkiiiiiiii---

---**yirtnyyryfttt*ik*igfr*rnc**k*krnkt*cl**ry**nensdqqcnrrr
kkkiiqil*f*t*riicqrn*tafk*i*fss**il*n*iiislm*phnkf******shkk
tkahchsst*i**ftnqnf*sknntkfy*kikrkfyywgepthlyfkkk

Frame C:
yfkistyytlkfryq*fnhfntiprtnsrgtlihfnlqist*kinvy*kkf*iiisitfk
nsitkccwc*fiitnsnflfnkikftislvkftiyiii*rsninre*nklffsyndncsi
fh*kydi*ifn*csrskcttkiir**yyn*ik*yrnq*ren*rtkrk********---

---NNTLEPIIIDTLQQHESNKLVSDKEIVNENEREIKHSASSNDTDKMKIVTNNATEEE
KKKLFKFYNSKPEELSVKEIKQLLNEYNSLVDKYFETK*lfh*cnhtinfnnnnnnpikk
qkriailqlkfnnlqtktfnqkttqnftrk*kenfiiggnpptcilkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01905-1 (Contig-U01905-1Q)
/CSM_Contig/Contig-U01905-1Q.Seq.d
         (1038 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01905-1 (Contig-U01905-1Q) /CSM_Contig/Conti...   952  0.0
Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Conti...    36  0.073
Contig-U11144-1 (Contig-U11144-1Q) /CSM_Contig/Conti...    36  0.073
Contig-U06860-1 (Contig-U06860-1Q) /CSM_Contig/Conti...    36  0.073
Contig-U05579-1 (Contig-U05579-1Q) /CSM_Contig/Conti...    36  0.073
Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Conti...    34  0.29
Contig-U13829-1 (Contig-U13829-1Q) /CSM_Contig/Conti...    34  0.29
Contig-U13615-1 (Contig-U13615-1Q) /CSM_Contig/Conti...    34  0.29
Contig-U13527-1 (Contig-U13527-1Q) /CSM_Contig/Conti...    34  0.29

>Contig-U01905-1 (Contig-U01905-1Q) /CSM_Contig/Contig-U01905-1Q.Seq.d
          Length = 1038

 Score =  952 bits (480), Expect = 0.0
 Identities = 494/501 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatttcaagatttcaacatattacaccctcaaatttagatatcaatgattcaatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catatttcaagatttcaacatattacaccctcaaatttagatatcaatgattcaatcatt 60

                                                                       
Query: 61  tcaacacaattcctcgaacaaattcaagaggaactcttatacatttcaatcttcaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaacacaattcctcgaacaaattcaagaggaactcttatacatttcaatcttcaaatct 120

                                                                       
Query: 121 ccacgtgaaaaattaatgtgtattnnnnnnngttttaaattattatttcaattactttca 180
           ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 121 ccacgtgaaaaattaatgtgtattaaaaaaagttttaaattattatttcaattactttca 180

                                                                       
Query: 181 aaaactcaattaccaagtgttgttggtgctgatttattattaccaatagtaattttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaactcaattaccaagtgttgttggtgctgatttattattaccaatagtaattttttgt 240

                                                                       
Query: 241 ttaataaaatcaaatttaccatttctctggtcaaatttacaatttatatcattatttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaataaaatcaaatttaccatttctctggtcaaatttacaatttatatcattatttaga 300

                                                                       
Query: 301 gatccaacattaatcgagagtgaaacaaattattttttagttacaatgataactgcagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatccaacattaatcgagagtgaaacaaattattttttagttacaatgataactgcagca 360

                                                                       
Query: 361 tctttcattgaaaatatgacatttgaatctttaactgatgcagtcgatccaaatgcacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctttcattgaaaatatgacatttgaatctttaactgatgcagtcgatccaaatgcacca 420

                                                                       
Query: 421 ccaaaatcatcagatgataatattataattgaatcaaataatatagaaatcaataaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaaaatcatcagatgataatattataattgaatcaaataatatagaaatcaataaagag 480

                                
Query: 481 aaaattgaagaacaaaaagaa 501
           |||||||||||||||||||||
Sbjct: 481 aaaattgaagaacaaaaagaa 501


 Score =  476 bits (240), Expect = e-134
 Identities = 262/273 (95%)
 Strand = Plus / Plus

                                                                       
Query: 548 cattagaaccaattattatagatactttacaacaacatgaatcaaataaattggtttcag 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cattagaaccaattattatagatactttacaacaacatgaatcaaataaattggtttcag 607

                                                                       
Query: 608 ataaagaaattgttaatgaaaatgaaagagaaataaaacatagtgcctctagtaacgata 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ataaagaaattgttaatgaaaatgaaagagaaataaaacatagtgcctctagtaacgata 667

                                                                       
Query: 668 ctgataaaatgaaaatagtgaccaacaatgcaacagaagaagnnnnnnnnnnnttattca 727
           ||||||||||||||||||||||||||||||||||||||||||           |||||||
Sbjct: 668 ctgataaaatgaaaatagtgaccaacaatgcaacagaagaagaaaaaaaaaaattattca 727

                                                                       
Query: 728 aattttataattctaaacctgaagaattatctgtcaaagaaattaaacagcttttaaatg 787
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aattttataattctaaacctgaagaattatctgtcaaagaaattaaacagcttttaaatg 787

                                            
Query: 788 aatataattctctagttgataaatactttgaaa 820
           |||||||||||||||||||||||||||||||||
Sbjct: 788 aatataattctctagttgataaatactttgaaa 820


 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                      
Query: 987  agaaaattttattattggggggaacccacccacttgtatttt 1028
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  agaaaattttattattggggggaacccacccacttgtatttt 1028


 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 892 caaaagcgcattgccattcttcaacttaaat 922
           |||||||||||||||||||||||||||||||
Sbjct: 892 caaaagcgcattgccattcttcaacttaaat 922


>Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d
          Length = 1873

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 444 tataattgaatcaaataata 463
           ||||||||||||||||||||
Sbjct: 775 tataattgaatcaaataata 756


>Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Contig-U12001-1Q.Seq.d
          Length = 1576

 Score = 36.2 bits (18), Expect = 0.073
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 154 tttaaattattatttcaattac 175
           ||||||||||||||| ||||||
Sbjct: 380 tttaaattattatttaaattac 359


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,453
Number of Sequences: 6905
Number of extensions: 20453
Number of successful extensions: 2394
Number of sequences better than 10.0: 270
length of query: 1038
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1022
effective length of database: 5,564,391
effective search space: 5686807602
effective search space used: 5686807602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01905-1 (Contig-U01905-1Q) /CSM_Contig/Contig-U01905-1Q.Seq.d
         (1038 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...   398   0.0    7
(C91323) Dictyostelium discoideum slug cDNA, clone SSK475.        321   e-153  4
(AU074357) Dictyostelium discoideum slug cDNA, clone SSK475.      285   e-119  2
(AU265170) Dictyostelium discoideum vegetative cDNA clone:VS...   371   4e-98  1
(AU265169) Dictyostelium discoideum vegetative cDNA clone:VS...   172   2e-38  1
(EC818680) SME00008687 esmbsro2 Sawyeria marylandensis cDNA,...    42   0.013  3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.033  15
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    34   0.046  9
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    44   0.067  5
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.080  16
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    36   0.10   16
(AM646517) Entamoeba moshkovskii FIC GSS, clone mosh039f10.p1k.    40   0.11   3
(AM650922) Entamoeba moshkovskii FIC GSS, clone mosh084c12.p1k.    40   0.13   2
(AM661616) Entamoeba moshkovskii FIC GSS, clone mosh113c10.p1k.    40   0.13   2
(AM652273) Entamoeba moshkovskii FIC GSS, clone mosh113c10.q1k.    40   0.13   2
(AM651575) Entamoeba moshkovskii FIC GSS, clone mosh097e05.p1k.    40   0.13   2
(AM651116) Entamoeba moshkovskii FIC GSS, clone mosh088b08.p1k.    40   0.13   2
(AM661737) Entamoeba moshkovskii FIC GSS, clone mosh114d06.q1k.    40   0.13   2
(AM662632) Entamoeba moshkovskii FIC GSS, clone mosh124h04.q1k.    40   0.13   2
(AM663446) Entamoeba moshkovskii FIC GSS, clone mosh010f10.p1k.    40   0.13   2
(AM658157) Entamoeba moshkovskii FIC GSS, clone mosh078f09.q1k.    40   0.13   2
(AM653369) Entamoeba moshkovskii FIC GSS, clone mosh130d11.p1k.    40   0.13   2
(AM645208) Entamoeba moshkovskii FIC GSS, clone mosh022a07.p1k.    40   0.13   2
(AM653885) Entamoeba moshkovskii FIC GSS, clone mosh006c05.p1k.    40   0.13   2
(AM649842) Entamoeba moshkovskii FIC GSS, clone mosh070h12.q1k.    40   0.13   2
(AM658336) Entamoeba moshkovskii FIC GSS, clone mosh079g02.q1k.    40   0.13   2
(AM647437) Entamoeba moshkovskii FIC GSS, clone mosh050e07.q1k.    40   0.13   2
(AM655091) Entamoeba moshkovskii FIC GSS, clone mosh021a09.q1k.    40   0.13   2
(AM647729) Entamoeba moshkovskii FIC GSS, clone mosh053c04.p1k.    40   0.13   2
(AM648879) Entamoeba moshkovskii FIC GSS, clone mosh063b01.p1k.    40   0.13   2
(AM646620) Entamoeba moshkovskii FIC GSS, clone mosh041a02.p1k.    40   0.13   2
(AM655648) Entamoeba moshkovskii FIC GSS, clone mosh030c07.p1k.    40   0.13   2
(AM657393) Entamoeba moshkovskii FIC GSS, clone mosh060e06.q1k.    40   0.13   2
(AM645177) Entamoeba moshkovskii FIC GSS, clone mosh021f05.p1k.    40   0.13   2
(AM645723) Entamoeba moshkovskii FIC GSS, clone mosh028e01.p1k.    40   0.13   2
(AM656095) Entamoeba moshkovskii FIC GSS, clone mosh036a10.q1k.    40   0.14   2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    32   0.14   10
(AM655422) Entamoeba moshkovskii FIC GSS, clone mosh024h12.p1k.    40   0.14   2
(BI451395) kx23g02.y1 Parastrongyloides trichosuri FL pAMP1 ...    50   0.17   1
(AC026428) Homo sapiens chromosome 5 clone CTD-2203I6, compl...    32   0.20   6
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    38   0.33   2
(AC160666) Bos taurus clone CH240-95I23, WORKING DRAFT SEQUE...    36   0.52   5
(AF396436) Tetrahymena thermophila strain SB210 mitochondrio...    44   0.61   6
(DE534374) Bombyx mori genomic DNA, Fosmid clone:GBMFno159_i...    34   0.61   3
(AC141816) Apis mellifera clone CH224-61C2, *** SEQUENCING I...    48   0.68   1
(EE004865) ROE00000214 Rhizopus oryzae Company Rhizopus oryz...    48   0.68   1
(AC223811) Bos taurus clone CH240-457B15, WORKING DRAFT SEQU...    42   0.72   4
(X65130) D.subobscura mitochondrion genes for cytochrome b, ...    40   0.82   2
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    36   0.85   8
(AA455622) aa22a02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ...    38   1.1    2
(AC184235) Strongylocentrotus purpuratus clone R3-3007C5, WO...    36   1.2    4
(AX555404) Sequence 8 from Patent WO02066623.                      38   1.3    2
(AA741156) nz01h03.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ...    38   1.3    2
(AA815209) oc04h09.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ...    38   1.3    2
(AC176313) Strongylocentrotus purpuratus clone R3-3007B5, WO...    36   1.5    3
(EA694103) Sequence 72982 from patent US 7365185.                  38   1.5    2
(EA714161) Sequence 93040 from patent US 7365185.                  38   1.6    2
(AW183689) xj86f08.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    38   1.6    2
(AM474466) Vitis vinifera contig VV78X010502.3, whole genome...    38   1.8    4
(EU591886) Glossina pallicera pallicera isolate Gpallic_2 NA...    44   1.8    2
(EU591885) Glossina pallicera pallicera isolate Gpallic_1 NA...    44   1.8    2
(EU591882) Glossina tachinoides isolate Gtac_4 NADH dehydrog...    44   1.8    2
(EU591881) Glossina tachinoides isolate Gtac_2 NADH dehydrog...    44   1.8    2
(EI494428) PV_GBa0111N15.r PV_GBa Phaseolus vulgaris genomic...    36   1.8    2
(EK334570) 1095467035822 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.8    2
(AW978159) EST390268 MAGE resequences, MAGO Homo sapiens cDN...    38   2.0    2
(AP000456) Homo sapiens genomic DNA, chromosome 21 clone:RP1...    34   2.5    6
(EK265537) 1095462223277 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.5    2
(BV603874) S217P62068FA2.T0 Noemie Pan troglodytes troglodyt...    46   2.7    1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    46   2.7    1
(AL365500) Human DNA sequence from clone RP11-232C13 on chro...    46   2.7    1
(AC099790) Homo sapiens chromosome 1 clone RP11-397G23, comp...    46   2.7    1
(AC096537) Homo sapiens chromosome 1 clone RP11-100E13, comp...    46   2.7    1
(AC097421) Rattus norvegicus clone CH230-24E11, *** SEQUENCI...    46   2.7    1
(AC026235) Homo sapiens chromosome 1 clone RP11-285A20, WORK...    46   2.7    1
(AL392187) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    46   2.7    1
(EJ796614) 1093017404726 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.7    1
(EJ788662) 1093017366104 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.7    1
(BH940252) odf76g05.b1 B.oleracea002 Brassica oleracea genom...    46   2.7    1
(AG429950) Mus musculus molossinus DNA, clone:MSMg01-304M08....    46   2.7    1
(CX308213) C20007D11SK OF2 Citrus clementina cDNA clone C200...    46   2.7    1
(AC117984) Homo sapiens chromosome 16 clone CTD-2503H21, com...    34   2.8    7
(AP008075) Lotus japonicus genomic DNA, clone:LjB08F07, BM1431.    40   2.9    2
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    38   3.0    8
(EC824840) SME00003777 esmbsro2 Sawyeria marylandensis cDNA,...    32   3.2    3
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    34   3.3    8
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    34   3.4    8
(CU372902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.6    4
(AF203688) Canavalia lineata ornithine carbamoyltransferase ...    42   3.8    2
(AC016100) Homo sapiens clone RP11-26F22, WORKING DRAFT SEQU...    44   3.9    5
(CS468878) Sequence 69 from Patent EP1748080.                      42   3.9    5
(CS419355) Sequence 69 from Patent WO2006094836.                   42   3.9    5
(AC073277) Homo sapiens chromosome 3 clone RP11-657G5, WORKI...    34   4.2    4
(CU856526) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.2    6
(AL163217) Homo sapiens chromosome 21 segment HS21C017.            38   4.3    7
(AC190468) Loxodonta africana clone VMRC15-192B5, WORKING DR...    44   4.4    2
(AC161031) Medicago truncatula chromosome 8 clone mth2-65j10...    36   4.7    7
(AM437676) Vitis vinifera contig VV78X114785.19, whole genom...    44   4.7    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   5.0    2
(AC060229) Homo sapiens chromosome 10 clone RP11-141A16, WOR...    34   5.0    2
(BX957246) Zebrafish DNA sequence from clone CH211-89F7 in l...    34   5.1    2
(AC012558) Homo sapiens chromosome 10 clone RP11-174J11, com...    34   5.1    2
(AM470785) Vitis vinifera contig VV78X010201.8, whole genome...    34   5.4    2
(BX276103) Zebrafish DNA sequence from clone DKEY-7B17 in li...    40   5.6    5
(AF311280) Anopheles neivai NADH dehydrogenase subunit 5 (ND...    36   5.8    2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   6.0    12
(AL078474) Homo sapiens chromosome 21 PAC RPCIP704H2137.           38   6.3    4
(EK030243) 1092955402947 Global-Ocean-Sampling_GS-31-01-01-1...    34   6.8    2
(AM646516) Entamoeba moshkovskii FIC GSS, clone mosh039f09.p1k.    34   6.9    2
(AC099161) Rattus norvegicus clone CH230-50G6, *** SEQUENCIN...    36   6.9    7
(AL008970) Plasmodium falciparum MAL3P4.                           38   7.0    7
(AC090815) Homo sapiens chromosome 15, clone RP11-1078O1, co...    36   7.4    3
(AC179066) Strongylocentrotus purpuratus clone R3-4009B23, W...    36   7.6    5
(AC127913) Rattus norvegicus clone CH230-208O8, *** SEQUENCI...    40   7.6    7
(AC171649) Macaca mulatta clone CH250-475I6, WORKING DRAFT S...    42   7.6    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   7.7    13
(AC093677) Homo sapiens BAC clone RP11-629B11 from 4, comple...    42   8.0    5
(CT027661) Medicago truncatula chromosome 5 clone mth2-70c9,...    40   8.3    4
(EJ689456) 1092955386405 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.3    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   8.5    9
(AC023405) Homo sapiens chromosome 8, clone RP11-199K17, com...    38   8.6    7
(CX094186) EHAFV66TR E. histolytica Normalized cDNA library ...    36   9.6    2
(AL929239) Zebrafish DNA sequence from clone CH211-112F11 in...    40   9.6    7
(BX936381) Zebrafish DNA sequence from clone CH211-152H14 in...    44   9.7    4

>(AC115599) Dictyostelium discoideum chromosome 2 map 4229098-4354721
             strain AX4, complete sequence.
          Length = 125623

 Score =  398 bits (201), Expect(7) = 0.0
 Identities = 201/201 (100%)
 Strand = Plus / Plus


Query: 238   tgtttaataaaatcaaatttaccatttctctggtcaaatttacaatttatatcattattt 297
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51167 tgtttaataaaatcaaatttaccatttctctggtcaaatttacaatttatatcattattt 51226


Query: 298   agagatccaacattaatcgagagtgaaacaaattattttttagttacaatgataactgca 357
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51227 agagatccaacattaatcgagagtgaaacaaattattttttagttacaatgataactgca 51286


Query: 358   gcatctttcattgaaaatatgacatttgaatctttaactgatgcagtcgatccaaatgca 417
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51287 gcatctttcattgaaaatatgacatttgaatctttaactgatgcagtcgatccaaatgca 51346


Query: 418   ccaccaaaatcatcagatgat 438
             |||||||||||||||||||||
Sbjct: 51347 ccaccaaaatcatcagatgat 51367

 Score =  305 bits (154), Expect(7) = 0.0
 Identities = 160/162 (98%)
 Strand = Plus / Plus


Query: 548   cattagaaccaattattatagatactttacaacaacatgaatcaaataaattggtttcag 607
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51459 cattagaaccaattattatagatactttacaacaacatgaatcaaataaattggtttcag 51518


Query: 608   ataaagaaattgttaatgaaaatgaaagagaaataaaacatagtgcctctagtaacgata 667
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 51519 ataaagaaattgttaatgaaaatgaaagagaaataaaaaatagtgcctctagtaacgata 51578


Query: 668   ctgataaaatgaaaatagtgaccaacaatgcaacagaagaag 709
              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 51579 atgataaaatgaaaatagtgaccaacaatgcaacagaagaag 51620

 Score =  285 bits (144), Expect(7) = 0.0
 Identities = 144/144 (100%)
 Strand = Plus / Plus


Query: 1     catatttcaagatttcaacatattacaccctcaaatttagatatcaatgattcaatcatt 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50810 catatttcaagatttcaacatattacaccctcaaatttagatatcaatgattcaatcatt 50869


Query: 61    tcaacacaattcctcgaacaaattcaagaggaactcttatacatttcaatcttcaaatct 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50870 tcaacacaattcctcgaacaaattcaagaggaactcttatacatttcaatcttcaaatct 50929


Query: 121   ccacgtgaaaaattaatgtgtatt 144
             ||||||||||||||||||||||||
Sbjct: 50930 ccacgtgaaaaattaatgtgtatt 50953

 Score =  200 bits (101), Expect(7) = 0.0
 Identities = 101/101 (100%)
 Strand = Plus / Plus


Query: 721   ttattcaaattttataattctaaacctgaagaattatctgtcaaagaaattaaacagctt 780
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51632 ttattcaaattttataattctaaacctgaagaattatctgtcaaagaaattaaacagctt 51691


Query: 781   ttaaatgaatataattctctagttgataaatactttgaaac 821
             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 51692 ttaaatgaatataattctctagttgataaatactttgaaac 51732

 Score =  170 bits (86), Expect(7) = 0.0
 Identities = 86/86 (100%)
 Strand = Plus / Plus


Query: 152   gttttaaattattatttcaattactttcaaaaactcaattaccaagtgttgttggtgctg 211
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50961 gttttaaattattatttcaattactttcaaaaactcaattaccaagtgttgttggtgctg 51020


Query: 212   atttattattaccaatagtaattttt 237
             ||||||||||||||||||||||||||
Sbjct: 51021 atttattattaccaatagtaattttt 51046

 Score = 63.9 bits (32), Expect(7) = 0.0
 Identities = 32/32 (100%)
 Strand = Plus / Plus


Query: 997   attattggggggaacccacccacttgtatttt 1028
             ||||||||||||||||||||||||||||||||
Sbjct: 51908 attattggggggaacccacccacttgtatttt 51939

 Score = 42.1 bits (21), Expect(7) = 0.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 892   caaaagcgcattgccattctt 912
             |||||||||||||||||||||
Sbjct: 51803 caaaagcgcattgccattctt 51823

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,144,270,324
Number of extensions: 74084868
Number of successful extensions: 6563098
Number of sequences better than 10.0: 126
Length of query: 1038
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1014
Effective length of database: 99,340,224,878
Effective search space: 100730988026292
Effective search space used: 100730988026292
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01905-1 (Contig-U01905-1Q) /CSM_Contig/Contig-U01905-1Q.Seq.d
         (1038 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB025631_1(AB025631|pid:none) Arabidopsis thaliana genomic DNA, ...    80   2e-13
S49629(S49629;S59806) VPS9 protein - yeast (Saccharomyces cerevi...    77   8e-13
U20373_1(U20373|pid:none) Saccharomyces cerevisiae Vps9p (VPS9) ...    75   3e-12
(O74396) RecName: Full=Vacuolar protein sorting-associated prote...    75   4e-12
BT037158_1(BT037158|pid:none) Zea mays full-length cDNA clone ZM...    74   8e-12
CU928169_701(CU928169|pid:none) Kluyveromyces thermotolerans str...    73   1e-11
AC092852_1(AC092852|pid:none) Oryza sativa chromosome 3 BAC OSJN...    72   3e-11
AE017347_267(AE017347|pid:none) Cryptococcus neoformans var. neo...    71   7e-11
CR382124_421(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    71   7e-11
CP001330_410(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    66   2e-09
CU633872_90(CU633872|pid:none) Podospora anserina genomic DNA ch...    65   5e-09
FN392321_197(FN392321|pid:none) Pichia pastoris GS115 chromosome...    64   9e-09
(A5D794) RecName: Full=GTPase-activating protein and VPS9 domain...    62   4e-08
AK023841_1(AK023841|pid:none) Homo sapiens cDNA FLJ13779 fis, cl...    61   6e-08
AL845262_9(AL845262|pid:none) Mouse DNA sequence from clone RP23...    61   6e-08
AL845262_11(AL845262|pid:none) Mouse DNA sequence from clone RP2...    61   6e-08
AB040954_1(AB040954|pid:none) Homo sapiens mRNA for KIAA1521 pro...    61   6e-08
AK014474_1(AK014474|pid:none) Mus musculus 14 days embryo liver ...    61   6e-08
BC043715_1(BC043715|pid:none) Mus musculus GTPase activating pro...    61   6e-08
AK089528_1(AK089528|pid:none) Mus musculus B6-derived CD11 +ve d...    61   6e-08
AL845262_8(AL845262|pid:none) Mouse DNA sequence from clone RP23...    61   6e-08
BC013635_1(BC013635|pid:none) Homo sapiens GTPase activating pro...    61   6e-08
AL845262_10(AL845262|pid:none) Mouse DNA sequence from clone RP2...    61   6e-08
(Q9P207) RecName: Full=GTPase-activating protein and VPS9 domain...    61   6e-08
AL354710_9(AL354710|pid:none) Human DNA sequence from clone RP11...    61   6e-08
AL354710_7(AL354710|pid:none) Human DNA sequence from clone RP11...    61   6e-08
AX399920_1(AX399920|pid:none) Sequence 91 from Patent WO0218424.       61   6e-08
AK096224_1(AK096224|pid:none) Homo sapiens cDNA FLJ38905 fis, cl...    61   6e-08
AK129381_1(AK129381|pid:none) Mus musculus premature mRNA for mK...    61   6e-08
DQ233254_1(DQ233254|pid:none) Homo sapiens Rab5-activating prote...    61   7e-08
CU928173_15(CU928173|pid:none) Zygosaccharomyces rouxii strain C...    61   7e-08
AM269976_4(AM269976|pid:none) Aspergillus niger contig An01c0290...    60   1e-07
CR954215_238(CR954215|pid:none) Ostreococcus tauri strain OTTH05...    60   2e-07
CP000498_275(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    60   2e-07
FM992693_237(FM992693|pid:none) Candida dubliniensis CD36 chromo...    60   2e-07
AK003521_1(AK003521|pid:none) Mus musculus 18-day embryo whole b...    59   4e-07
CR382131_1350(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    58   6e-07
BC045469_1(BC045469|pid:none) Danio rerio RAB guanine nucleotide...    55   4e-06
AC135206_10(AC135206|pid:none) Oryza sativa (japonica cultivar-g...    55   4e-06
CR382133_259(CR382133|pid:none) Debaryomyces hansenii strain CBS...    55   5e-06
(Q9VZ08) RecName: Full=Receptor-mediated endocytosis protein 6 h...    53   2e-05
FN357316_11(FN357316|pid:none) Schistosoma mansoni genome sequen...    53   2e-05
AE017341_599(AE017341|pid:none) Cryptococcus neoformans var. neo...    52   3e-05
(Q29HW3) RecName: Full=Receptor-mediated endocytosis protein 6 h...    52   3e-05
BC097679_1(BC097679|pid:none) Xenopus laevis hypothetical protei...    50   1e-04
AK001702_1(AK001702|pid:none) Homo sapiens cDNA FLJ10840 fis, cl...    50   1e-04
AK290678_1(AK290678|pid:none) Homo sapiens cDNA FLJ75284 complet...    50   1e-04
BT081942_1(BT081942|pid:none) Rana catesbeiana clone rcat-evr-53...    50   1e-04
DQ230535_1(DQ230535|pid:none) Homo sapiens RAP1 short isoform mR...    50   1e-04
AY891449_1(AY891449|pid:none) Synthetic construct Homo sapiens c...    50   1e-04
BC109491_1(BC109491|pid:none) Bos taurus RAB guanine nucleotide ...    50   2e-04
BC168697_1(BC168697|pid:none) Rattus norvegicus RAB guanine nucl...    50   2e-04
AK223329_1(AK223329|pid:none) Homo sapiens mRNA for RAB guanine ...    50   2e-04
T31057(T31057)hypothetical protein C05D9.6 - Caenorhabditis eleg...    48   5e-04
T26732(T26732)hypothetical protein Y39A1A.5a - Caenorhabditis el...    48   6e-04
AP007171_461(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    47   8e-04
AK154522_1(AK154522|pid:none) Mus musculus NOD-derived CD11c +ve...    47   0.001
AK154963_1(AK154963|pid:none) Mus musculus NOD-derived CD11c +ve...    47   0.001
(P59729) RecName: Full=Ras and Rab interactor 3; AltName: Full=R...    47   0.001
AY265356_1(AY265356|pid:none) Mus musculus Ras and Rab interacto...    47   0.001
BC137907_1(BC137907|pid:none) Mus musculus Ras and Rab interacto...    47   0.001
AM920437_2122(AM920437|pid:none) Penicillium chrysogenum Wiscons...    46   0.002
AL136784_1(AL136784|pid:none) Homo sapiens mRNA; cDNA DKFZp434L0...    46   0.002
AK054561_1(AK054561|pid:none) Homo sapiens mRNA for FLJ00040 pro...    46   0.002
(Q96NW4) RecName: Full=Ankyrin repeat domain-containing protein ...    46   0.002
AM270003_5(AM270003|pid:none) Aspergillus niger contig An02c0080...    46   0.002
AK026092_1(AK026092|pid:none) Homo sapiens cDNA: FLJ22439 fis, c...    45   0.005
BC070062_1(BC070062|pid:none) Homo sapiens Ras and Rab interacto...    45   0.005
BX248258_1(BX248258|pid:none) human full-length cDNA clone CS0DM...    45   0.005
(Q8TB24) RecName: Full=Ras and Rab interactor 3; AltName: Full=R...    45   0.005
(Q5REW9) RecName: Full=Ankyrin repeat domain-containing protein ...    44   0.012
AM910987_168(AM910987|pid:none) Plasmodium knowlesi strain H chr...    43   0.016
BC025248_1(BC025248|pid:none) Homo sapiens Ras and Rab interacto...    43   0.016
AL844507_149(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.027
BT045911_1(BT045911|pid:none) Salmo salar clone ssal-rgf-536-200...    41   0.060
BC058432_1(BC058432|pid:none) Mus musculus Ras and Rab interacto...    41   0.079
CU928169_524(CU928169|pid:none) Kluyveromyces thermotolerans str...    40   0.13
AB467312_1(AB467312|pid:none) Bombyx mori BmVarp mRNA for putati...    40   0.18
CR382125_1012(CR382125|pid:none) Kluyveromyces lactis strain NRR...    39   0.23
AE016818_108(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    39   0.23
AE014185_221(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.30
CT025859_6(CT025859|pid:none) Zebrafish DNA sequence from clone ...    39   0.39
CP000141_962(CP000141|pid:none) Carboxydothermus hydrogenoforman...    39   0.39
BC129447_1(BC129447|pid:none) Danio rerio zgc:158780, mRNA (cDNA...    39   0.39
CP000879_17(CP000879|pid:none) Petrotoga mobilis SJ95, complete ...    38   0.51
BC021813_1(BC021813|pid:none) Mus musculus RIKEN cDNA 1300018I17...    38   0.51
(Q8C190) RecName: Full=Uncharacterized protein C16orf7 homolog; ...    38   0.51
AK154421_1(AK154421|pid:none) Mus musculus NOD-derived CD11c +ve...    38   0.67
CP000678_1756(CP000678|pid:none) Methanobrevibacter smithii ATCC...    38   0.67
AK014548_1(AK014548|pid:none) Mus musculus 0 day neonate skin cD...    38   0.67
AL672100_1(AL672100|pid:none) Mouse DNA sequence from clone RP23...    38   0.67
AK171064_1(AK171064|pid:none) Mus musculus NOD-derived CD11c +ve...    38   0.67
AK163047_1(AK163047|pid:none) Mus musculus 0 day neonate thymus ...    38   0.67
AK151332_1(AK151332|pid:none) Mus musculus bone marrow macrophag...    38   0.67
(Q9D684) RecName: Full=Ras and Rab interactor 2; AltName: Full=R...    38   0.67
AK152025_1(AK152025|pid:none) Mus musculus bone marrow macrophag...    38   0.67
BC161487_1(BC161487|pid:none) Xenopus tropicalis Ras and Rab int...    38   0.67
AK154409_1(AK154409|pid:none) Mus musculus NOD-derived CD11c +ve...    37   0.87
CP000937_1436(CP000937|pid:none) Francisella philomiragia subsp....    37   0.87
AE015927_1847(AE015927|pid:none) Clostridium tetani E88, complet...    37   0.87
AE014186_30(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.87
AM295250_2318(AM295250|pid:none) Staphylococcus carnosus subsp. ...    37   0.87
AL049538_1(AL049538|pid:none) Human DNA sequence from clone RP5-...    37   1.1
AC116963_43(AC116963|pid:none) Dictyostelium discoideum chromoso...    37   1.1
AL035475_18(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   1.1
(P97680) RecName: Full=Ras and Rab interactor 1; AltName: Full=R...    37   1.5
BC149030_1(BC149030|pid:none) Bos taurus hypothetical LOC537459,...    37   1.5
U80076_1(U80076|pid:none) Rattus norvegicus RIN1 mRNA, complete ...    37   1.5
(Q921Q7) RecName: Full=Ras and Rab interactor 1; AltName: Full=R...    37   1.5
EU424062_7(EU424062|pid:none) Human parainfluenza virus 3 strain...    36   1.9
AE001362_19(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    36   1.9
AF016281_3(AF016281|pid:none) Recombinant PIV3/PIV1 virus fusion...    36   1.9
AF087698_1(AF087698|pid:none) Plasmodium falciparum erythrocyte ...    36   1.9
U51116_7(U51116|pid:none) Human parainfluenza virus 3, mutant cp...    36   1.9
FN357320_11(FN357320|pid:none) Schistosoma mansoni genome sequen...    36   2.5
(Q8WYA0) RecName: Full=Intraflagellar transport protein 81 homol...    36   2.5
AK091549_1(AK091549|pid:none) Homo sapiens cDNA FLJ34230 fis, cl...    36   2.5
AY039661_1(AY039661|pid:none) Streptococcus pyogenes strain NS90...    35   3.3
(Q6FWF3) RecName: Full=E3 ubiquitin-protein ligase BRE1;        ...    35   3.3
AC147959_19(AC147959|pid:none) Medicago truncatula clone mth2-11...    35   4.3
AP006628_690(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    35   4.3
CP001279_68(CP001279|pid:none) Nautilia profundicola AmH, comple...    35   4.3
(P17119) RecName: Full=Kinesin-like protein KAR3; AltName: Full=...    35   5.7
CP000246_969(CP000246|pid:none) Clostridium perfringens ATCC 131...    35   5.7
CR380953_130(CR380953|pid:none) Candida glabrata strain CBS138 c...    35   5.7
(Q13671) RecName: Full=Ras and Rab interactor 1; AltName: Full=R...    35   5.7
AY082376_1(AY082376|pid:none) Dictyostelium discoideum ABC trans...    35   5.7
CP001185_3(CP001185|pid:none) Thermosipho africanus TCF52B, comp...    35   5.7
CR380954_224(CR380954|pid:none) Candida glabrata strain CBS138 c...    35   5.7
(Q54K24) RecName: Full=ABC transporter C family member 14; AltNa...    35   5.7
CP001357_1832(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    35   5.7
AB209445_1(AB209445|pid:none) Homo sapiens mRNA for ras inhibito...    35   5.7
AK301430_1(AK301430|pid:none) Homo sapiens cDNA FLJ51119 complet...    34   7.4
FJ455842_6(FJ455842|pid:none) Human parainfluenza virus 3 strain...    34   7.4
AE014186_166(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   7.4
CR382400_21(CR382400|pid:none) Plasmodium falciparum chromosome ...    34   7.4
AK295365_1(AK295365|pid:none) Homo sapiens cDNA FLJ51965 complet...    34   7.4
AE014188_228(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   7.4
CP000013_356(CP000013|pid:none) Borrelia garinii PBi, complete g...    34   7.4
AE014187_93(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    34   7.4
AK023435_1(AK023435|pid:none) Homo sapiens cDNA FLJ13373 fis, cl...    34   7.4
AE014188_394(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.6
CR380955_110(CR380955|pid:none) Candida glabrata strain CBS138 c...    34   9.6
(P43610) RecName: Full=Uncharacterized ATP-dependent helicase YF...    34   9.6
AE015927_2041(AE015927|pid:none) Clostridium tetani E88, complet...    34   9.6
CU928176_167(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    34   9.6
AY391257_1(AY391257|pid:none) Tetrahymena bergeri heat shock pro...    34   9.6
(Q6A7K0) RecName: Full=Ribosome-recycling factor;          Short...    34   9.6
AM910994_605(AM910994|pid:none) Plasmodium knowlesi strain H chr...    34   9.6

>AB025631_1(AB025631|pid:none) Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MPN9.
           &AY045810_1(AY045810|pid:none)
           &AY079338_1(AY079338|pid:none)
          Length = 520

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 6/272 (2%)
 Frame = +1

Query: 16  QHITPSNLDINDSIISTQFLEQIQEELLYISIFKSPREKLMCIXXXXXXXXXXXXXXXXP 195
           Q I+P NLDI  +  +       Q+EL  I+++K+PR+KL+CI
Sbjct: 117 QFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIA 176

Query: 196 S---VVGADLLLPIVIFCLIKSNLPFLWSNLQFISLFRDPTLIESETNYFLVTMITAASF 366
           S     GAD  LP++I+  IK+N P L SNL +I  +R  + +  E  YF   +++A SF
Sbjct: 177 SNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESF 236

Query: 367 IENMTFESLTDAVDPNAPPKSSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 546
           I N+  +S+  ++D     K+ +
Sbjct: 237 ISNIDAKSI--SLDEAEFEKNMES---ARARISGLDSQTYQTGHGSAPPPRDESTLQKTQ 291

Query: 547 TLEPIIIDTL-QQHESNKLVSDKEIVNEN-EREIKHSASSNDTDKMKIVTNNATEEEKK- 717
           +L P   +TL Q   S+ L    E++N N E  +K + S +D +         TE  K
Sbjct: 292 SLNPKRENTLFQSKSSDSLSGTNELLNINSETPMKKAESISDLENKGATLLKDTEPSKVF 351

Query: 718 KLFKFYNSKPEELSVKEIKQLLNEYNSLVDKY 813
           + + +  +   +L + +++ LLN Y  LV KY
Sbjct: 352 QEYPYIFASAGDLRIGDVEGLLNSYKQLVFKY 383

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,096,177,772
Number of extensions: 16563646
Number of successful extensions: 58318
Number of sequences better than 10.0: 149
Number of HSP's gapped: 58080
Number of HSP's successfully gapped: 149
Length of query: 346
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 217
Effective length of database: 633,664,753
Effective search space: 137505251401
Effective search space used: 137505251401
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.72  gvh: 0.32  alm: 0.22  top: 0.60  tms: 0.07  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U01905-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0