Contig-U12196-1
Contig ID Contig-U12196-1
Contig update 2002.12.18
Contig sequence
>Contig-U12196-1 (Contig-U12196-1Q) /CSM_Contig/Contig-U12196-1Q.Seq.d
ATTCTATATATTAATTTTTTATTAATTCTTTCTTTTTTTTTATTTTTTTT
TTTATTTTTCTTTTATATTTTTTTTTCTTTCTTTCATCAATATTGTTGTA
TATTATTCTATATTTACATTTGTATATTTATTCACTTTTTTATATTTATA
TATAATAAATCATTTAAAATTTTTGATTTTATATCATATCACACACCACA
TCATACATATTTAAAAATAAAAAAAATAAAATAAAATAAAAAAAAAAAAA
AAAAAA----------TTTTTTTTTATTATTATTATTATTATTTTTATCA
TTATTATTAATACTTTATATAATTATATTTTTATTATTTTTTATTATTTT
ATTATTTTTATTTTATTGCATATTATTAATTAACCTCAAAGAGAGGATAC
TTCTAACATCTTGAACATGTCTAATCATTTCCAAGAATGGTAACAATGAT
AACAAAGAAGTATCAGATGGATTATCACCCATCCAATTATCAATTGGTAA
AGCATTTTCAAGGTTATTCGAGTATGCAATTGGTGAATTATCAATAATAA
TAGTTGAAGTTAAATCTTGATCAATCATCGATAAATCTTTTACGAAATTT
CCATGTTTTTCTAAACAAGAATCTCTAAATAATCTTTTTTTGAAAACTTT
ATGAGTATCTAATTGATCGAGTAATGGATCGGCATATTGTTGCATACTGG
CAGTGAAAATTACTATATCGTACCATTGTGAAACCTTTTCCAAAAAGTAA
TCAACATGTGGTCTTTTAATAACATAAAATGTACAATCCATATCTTCAAT
TAAAACTTTAACTGTAATTTGATGATGTGTTACTGGTTTTAATGTTGAAT
GAACTAAAGTTTCACCAAATCTAAAATTAATGTTTTCT

Gap gap included
Contig length 878
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 6
Number of EST 8
Link to clone list U12196
List of clone(s)

est1=SSB356F,1,257
est2=SSD833Z,258,880
est3=CHI619F,303,639
est4=CHI619Z,303,523
est5=SSK174E,384,851
est6=SSB356Z,403,877
est7=SSC152F,479,815
est8=SSJ480Z,512,855
Translated Amino Acid sequence
fyilify*fflffyfffyfsfiffflsfinivvyysiftfvylftflylyiinhlkflil
yhithhiihi*k*kk*NKIKKKKKK---

---FFLLLLLLFLSLLLILYIIIFLLFFIILLFLFYCILLINLKERILLTS*tcliiskn
gnndnkevsdglspiqlsigkafsrlfeyaigelsiiivevks*siidksftkfpcfskq
eslnnlflktl*vsn*ssngsayccilavkitisyhcetfskk*stcgllit*nvqsiss
iktltvi**cvtgfnve*tkvspnlklmfs


Translated Amino Acid sequence (All Frames)
Frame A:
ilyinfllilsfflffflfffyiffsffhqyccilfyiyicifihffifiynksfkifdf
isyhtphhtylkikkik*nkkkkkk---

---fffiiiiiifiiiintlynyifiifyyfiifillhiin*pqredtsnilnmsnhfqe
w*q**qrsirwiithpiinw*sifkvirvcnw*iinnns*s*ilinhr*ifyeismff*t
risk*sffenfmsi*lie*wigillhtgsenyyivpl*nlfqkvinmwsfnnikctihif
n*nfncnlmmcywf*c*mn*sftkskinvf

Frame B:
fyilify*fflffyfffyfsfiffflsfinivvyysiftfvylftflylyiinhlkflil
yhithhiihi*k*kk*NKIKKKKKK---

---FFLLLLLLFLSLLLILYIIIFLLFFIILLFLFYCILLINLKERILLTS*tcliiskn
gnndnkevsdglspiqlsigkafsrlfeyaigelsiiivevks*siidksftkfpcfskq
eslnnlflktl*vsn*ssngsayccilavkitisyhcetfskk*stcgllit*nvqsiss
iktltvi**cvtgfnve*tkvspnlklmfs

Frame C:
siy*ffinsffffifffifllyfffflssillyiilylhlyiyslfyiyi**ii*nf*fy
iishttsyifknkknkik*kkkkk---

---ffyyyyyyfyhyy*yfi*lyfyyfllfyyfyfiayy*ltskrgyf*hlehv*sfprm
vtmitkkyqmdyhpsnyqlvkhfqgyssmqlvnyq***lklnldqssinllrnfhvflnk
nl*iiff*klyeylidrvmdrhivaywq*kllyrtivkpfpksnqhvvf**hkmynpylq
lkl*l*fddvllvlmlnelkfhqi*n*cf

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12196-1 (Contig-U12196-1Q)
/CSM_Contig/Contig-U12196-1Q.Seq.d
(888 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12196-1 (Contig-U12196-1Q) /CSM_Contig/Conti... 961 0.0
Contig-U03918-1 (Contig-U03918-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U03769-1 (Contig-U03769-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U14706-1 (Contig-U14706-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U12765-1 (Contig-U12765-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U01237-1 (Contig-U01237-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U13008-1 (Contig-U13008-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U12395-1 (Contig-U12395-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11251-1 (Contig-U11251-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U12674-1 (Contig-U12674-1Q) /CSM_Contig/Conti... 32 0.98

>Contig-U12196-1 (Contig-U12196-1Q) /CSM_Contig/Contig-U12196-1Q.Seq.d
Length = 888

Score = 961 bits (485), Expect = 0.0
Identities = 499/506 (98%)
Strand = Plus / Plus


Query: 383 acctcaaagagaggatacttctaacatcttgaacatgtctaatcatttccaagaatggta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctcaaagagaggatacttctaacatcttgaacatgtctaatcatttccaagaatggta 442


Query: 443 acaatgataacaaagaagtatcagatggattatcacccatccaattatcaattggtaaag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaatgataacaaagaagtatcagatggattatcacccatccaattatcaattggtaaag 502


Query: 503 cattttcaaggttattcgagtatgcaattggtgaattatcaataataatagttgaagtta 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cattttcaaggttattcgagtatgcaattggtgaattatcaataataatagttgaagtta 562


Query: 563 aatcttgatcaatcatcgataaatcttttacgaaatttccatgtttttctaaacaagaat 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatcttgatcaatcatcgataaatcttttacgaaatttccatgtttttctaaacaagaat 622


Query: 623 ctctaaataatcnnnnnnngaaaactttatgagtatctaattgatcgagtaatggatcgg 682
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctctaaataatctttttttgaaaactttatgagtatctaattgatcgagtaatggatcgg 682


Query: 683 catattgttgcatactggcagtgaaaattactatatcgtaccattgtgaaaccttttcca 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catattgttgcatactggcagtgaaaattactatatcgtaccattgtgaaaccttttcca 742


Query: 743 aaaagtaatcaacatgtggtcttttaataacataaaatgtacaatccatatcttcaatta 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaaagtaatcaacatgtggtcttttaataacataaaatgtacaatccatatcttcaatta 802


Query: 803 aaactttaactgtaatttgatgatgtgttactggttttaatgttgaatgaactaaagttt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaactttaactgtaatttgatgatgtgttactggttttaatgttgaatgaactaaagttt 862


Query: 863 caccaaatctaaaattaatgttttct 888
||||||||||||||||||||||||||
Sbjct: 863 caccaaatctaaaattaatgttttct 888


Score = 113 bits (57), Expect = 3e-25
Identities = 57/57 (100%)
Strand = Plus / Plus


Query: 155 ataaatcatttaaaatttttgattttatatcatatcacacaccacatcatacatatt 211
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ataaatcatttaaaatttttgattttatatcatatcacacaccacatcatacatatt 211


Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 77 ctttctttcatcaatattgttgtatattattc 108
||||||||||||||||||||||||||||||||
Sbjct: 77 ctttctttcatcaatattgttgtatattattc 108


>Contig-U03918-1 (Contig-U03918-1Q) /CSM_Contig/Contig-U03918-1Q.Seq.d
Length = 228

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 601 ccatgtttttctaaacaagaa 621
|||||||||||||||||||||
Sbjct: 148 ccatgtttttctaaacaagaa 128


>Contig-U03769-1 (Contig-U03769-1Q) /CSM_Contig/Contig-U03769-1Q.Seq.d
Length = 523

Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 528 aattggtgaattatcaataa 547
||||||||||||||||||||
Sbjct: 197 aattggtgaattatcaataa 216


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,367
Number of Sequences: 6905
Number of extensions: 10367
Number of successful extensions: 1161
Number of sequences better than 10.0: 128
length of query: 888
length of database: 5,674,871
effective HSP length: 16
effective length of query: 872
effective length of database: 5,564,391
effective search space: 4852148952
effective search space used: 4852148952
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12196-1 (Contig-U12196-1Q) /CSM_Contig/Contig-U12196-1Q.Seq.d
(888 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037597) Dictyostelium discoideum slug cDNA, clone SSD833. 500 0.0 2
(BJ346916) Dictyostelium discoideum cDNA clone:dda25d15, 3' ... 500 0.0 3
(C91404) Dictyostelium discoideum slug cDNA, clone SSK174. 460 0.0 2
(C84232) Dictyostelium discoideum slug cDNA, clone SSB356. 454 e-177 2
(C91237) Dictyostelium discoideum slug cDNA, clone SSJ480. 468 e-127 1
(BJ366459) Dictyostelium discoideum cDNA clone:ddc39e06, 5' ... 432 e-116 1
(AU071632) Dictyostelium discoideum slug cDNA, clone SSC152. 349 1e-91 1
(BJ380709) Dictyostelium discoideum cDNA clone:ddc39e06, 3' ... 232 2e-56 1
(AU071377) Dictyostelium discoideum slug cDNA, clone SSB356. 46 0.037 2
(CT780552) Paramecium tetraurelia 5-PRIME EST from clone LK0... 50 0.14 1
(BP515659) Hydra magnipapillata cDNA, clone:hmp_11828. 42 1.3 2
(BQ599786) MI-P-E6-ahn-g-09-1-UM.s1 MI-P-E6 Sus scrofa cDNA ... 44 1.5 2
(AC192790) Gallus gallus BAC clone CH261-37L5 from chromosom... 46 2.2 1
(AC169489) Loxodonta africana clone VMRC15-227O9, WORKING DR... 46 2.2 1
(CU582827) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2
(CU462844) Zebrafish DNA sequence from clone CH1073-51A17 in... 34 4.7 2
(DC224790) Plasmodium berghei strain ANKA cDNA clone:SG00088... 30 5.4 3
(AC117816) Mus musculus chromosome 19, clone RP24-573C13, co... 44 8.9 1
(CU407026) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.9 1
(CT827947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.9 1
(AC201320) Strongylocentrotus purpuratus clone R3-16L14, WOR... 44 8.9 1
(AC201297) Strongylocentrotus purpuratus clone R3-16H21, WOR... 44 8.9 1
(AC180656) Strongylocentrotus purpuratus clone R3-3019N12, W... 44 8.9 1
(AC179954) Strongylocentrotus purpuratus clone R3-20M16, WOR... 44 8.9 1
(AC179279) Strongylocentrotus purpuratus clone R3-1105L03, W... 44 8.9 1
(AC178782) Strongylocentrotus purpuratus clone R3-2A5, WORKI... 44 8.9 1
(AC177304) Strongylocentrotus purpuratus clone R3-1033E17, W... 44 8.9 1
(BH432623) BOGDP10TR BOGD Brassica oleracea genomic clone BO... 44 8.9 1
(ER303350) 1092343723909 Global-Ocean-Sampling_GS-34-01-01-1... 44 8.9 1
(EJ487331) 1095403512301 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.9 1
(EJ415060) 1093012176011 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.9 1
(EJ055610) 1095456026675 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1
(EJ017342) 1095439019745 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1
(EJ006878) 1091139282968 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1
(EB554884) AGENCOURT_51204123 D. virilis EST Drosophila viri... 44 8.9 1
(AV126216) Mus musculus 11-day embryo cDNA, partial sequence... 44 8.9 1
(CU695798) Phaeodactylum tricornutum mRNA 5-prime sequence f... 44 8.9 1
(AJ516465) Mytilus galloprovincialis EST, clone GPPD00438. 44 8.9 1
(CF447714) EST684059 normalized cDNA library of onion Allium... 44 8.9 1
(EW536143) rret32_m3.y1 ret Sus scrofa cDNA 5', mRNA sequence. 44 8.9 1
(EW533883) rret05_g24.y1 ret Sus scrofa cDNA 5', mRNA sequence. 44 8.9 1
(EW196620) rpfco0113_j5.y1 fco Sus scrofa cDNA 5', mRNA sequ... 44 8.9 1
(EW190785) rpfco0139_c14.y1 fco Sus scrofa cDNA 5', mRNA seq... 44 8.9 1
(EW190192) rpfco0136_c18.y1 fco Sus scrofa cDNA 5', mRNA seq... 44 8.9 1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 44 8.9 1
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 44 8.9 1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 44 8.9 1

>(AU037597) Dictyostelium discoideum slug cDNA, clone SSD833.
Length = 623

Score = 500 bits (252), Expect(2) = 0.0
Identities = 252/252 (100%)
Strand = Plus / Minus


Query: 383 acctcaaagagaggatacttctaacatcttgaacatgtctaatcatttccaagaatggta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acctcaaagagaggatacttctaacatcttgaacatgtctaatcatttccaagaatggta 447


Query: 443 acaatgataacaaagaagtatcagatggattatcacccatccaattatcaattggtaaag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acaatgataacaaagaagtatcagatggattatcacccatccaattatcaattggtaaag 387


Query: 503 cattttcaaggttattcgagtatgcaattggtgaattatcaataataatagttgaagtta 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cattttcaaggttattcgagtatgcaattggtgaattatcaataataatagttgaagtta 327


Query: 563 aatcttgatcaatcatcgataaatcttttacgaaatttccatgtttttctaaacaagaat 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aatcttgatcaatcatcgataaatcttttacgaaatttccatgtttttctaaacaagaat 267


Query: 623 ctctaaataatc 634
||||||||||||
Sbjct: 266 ctctaaataatc 255

Score = 490 bits (247), Expect(2) = 0.0
Identities = 247/247 (100%)
Strand = Plus / Minus


Query: 642 gaaaactttatgagtatctaattgatcgagtaatggatcggcatattgttgcatactggc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaaactttatgagtatctaattgatcgagtaatggatcggcatattgttgcatactggc 188


Query: 702 agtgaaaattactatatcgtaccattgtgaaaccttttccaaaaagtaatcaacatgtgg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agtgaaaattactatatcgtaccattgtgaaaccttttccaaaaagtaatcaacatgtgg 128


Query: 762 tcttttaataacataaaatgtacaatccatatcttcaattaaaactttaactgtaatttg 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tcttttaataacataaaatgtacaatccatatcttcaattaaaactttaactgtaatttg 68


Query: 822 atgatgtgttactggttttaatgttgaatgaactaaagtttcaccaaatctaaaattaat 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atgatgtgttactggttttaatgttgaatgaactaaagtttcaccaaatctaaaattaat 8


Query: 882 gttttct 888
|||||||
Sbjct: 7 gttttct 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 615,676,519
Number of extensions: 35290716
Number of successful extensions: 2673918
Number of sequences better than 10.0: 48
Length of query: 888
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 864
Effective length of database: 97,308,875,965
Effective search space: 84074868833760
Effective search space used: 84074868833760
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12196-1 (Contig-U12196-1Q) /CSM_Contig/Contig-U12196-1Q.Seq.d
(888 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC082639_1(BC082639|pid:none) Xenopus laevis Dullard homolog, mR... 160 5e-38
(Q5U3T3) RecName: Full=Serine/threonine-protein phosphatase dull... 160 7e-38
AK164602_1(AK164602|pid:none) Mus musculus 13 days embryo lung c... 159 9e-38
(Q5U395) RecName: Full=Serine/threonine-protein phosphatase dull... 159 2e-37
BT059545_1(BT059545|pid:none) Salmo salar clone ssal-rgf-538-017... 158 2e-37
(Q1RMV9) RecName: Full=Serine/threonine-protein phosphatase dull... 158 2e-37
AL596185_21(AL596185|pid:none) Mouse DNA sequence from clone RP2... 158 2e-37
(Q9VRG7) RecName: Full=Serine/threonine-protein phosphatase dull... 158 3e-37
AM269959_14(AM269959|pid:none) Aspergillus niger contig An01c012... 154 5e-36
BC161976_1(BC161976|pid:none) Rattus norvegicus CTD (carboxy-ter... 152 1e-35
AJ575644_1(AJ575644|pid:none) Homo sapiens mRNA for RB serine ph... 152 1e-35
BC076658_1(BC076658|pid:none) Xenopus tropicalis CTD (carboxy-te... 152 1e-35
Z83316_7(Z83316|pid:none) Caenorhabditis elegans Cosmid B0379, c... 152 1e-35
Z83316_8(Z83316|pid:none) Caenorhabditis elegans Cosmid B0379, c... 152 1e-35
Z83316_6(Z83316|pid:none) Caenorhabditis elegans Cosmid B0379, c... 152 1e-35
BC094289_1(BC094289|pid:none) Mus musculus CTD (carboxy-terminal... 152 1e-35
(Q61C05) RecName: Full=Serine/threonine-protein phosphatase dull... 152 2e-35
BT082608_1(BT082608|pid:none) Anoplopoma fimbria clone afim-evh-... 152 2e-35
CP000496_278(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 151 2e-35
AF441288_1(AF441288|pid:none) Xenopus laevis Os4 mRNA, complete ... 151 2e-35
CU633438_425(CU633438|pid:none) Podospora anserina genomic DNA c... 150 4e-35
(Q9PTJ6) RecName: Full=CTD small phosphatase-like protein; ... 150 7e-35
BT082921_1(BT082921|pid:none) Anoplopoma fimbria clone afim-evh-... 150 7e-35
BX322540_4(BX322540|pid:none) Zebrafish DNA sequence from clone ... 149 9e-35
AE016820_300(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 147 5e-34
BX294024_25(BX294024|pid:none) Neurospora crassa DNA linkage gro... 147 5e-34
CU640366_1353(CU640366|pid:none) Podospora anserina genomic DNA ... 147 6e-34
JC5707(JC5707)HYA22 protein - human 147 6e-34
CR380957_122(CR380957|pid:none) Candida glabrata strain CBS138 c... 145 1e-33
AM920431_263(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 145 2e-33
BT009984_1(BT009984|pid:none) Drosophila melanogaster RE52350 fu... 145 2e-33
AE014296_2764(AE014296|pid:none) Drosophila melanogaster chromos... 145 2e-33
BC105531_1(BC105531|pid:none) Bos taurus CTD (carboxy-terminal d... 144 4e-33
AL163812_3(AL163812|pid:none) Arabidopsis thaliana DNA chromosom... 144 4e-33
(Q09695) RecName: Full=Uncharacterized protein C2F7.02c; &CU329... 144 4e-33
AF022231_1(AF022231|pid:none) Homo sapiens unknown protein mRNA,... 144 5e-33
AF000152_1(AF000152|pid:none) Homo sapiens OS-4 protein (OS-4) m... 144 5e-33
(O14595) RecName: Full=Carboxy-terminal domain RNA polymerase II... 144 5e-33
CP001323_70(CP001323|pid:none) Micromonas sp. RCC299 chromosome ... 143 7e-33
CR940352_28(CR940352|pid:none) Theileria annulata strain Ankara ... 143 9e-33
AY751577_1(AY751577|pid:none) Phytophthora sojae nuclear LIM fac... 142 2e-32
BC063974_1(BC063974|pid:none) Danio rerio zgc:77714, mRNA (cDNA ... 142 2e-32
BT078759_1(BT078759|pid:none) Lepeophtheirus salmonis Pacific fo... 141 3e-32
AM270158_1(AM270158|pid:none) Aspergillus niger contig An08c0030... 141 3e-32
CR954212_284(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 140 4e-32
FM992690_49(FM992690|pid:none) Candida dubliniensis CD36 chromos... 140 4e-32
AM454061_1(AM454061|pid:none) Vitis vinifera contig VV79X007097.... 140 4e-32
CR382130_483(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 140 6e-32
BT046072_1(BT046072|pid:none) Salmo salar clone ssal-rgf-540-375... 140 6e-32
BT059332_1(BT059332|pid:none) Salmo salar clone ssal-rgf-541-370... 140 6e-32
AY693081_1(AY693081|pid:none) Saccharomyces cerevisiae clone FLH... 138 2e-31
AY231886_1(AY231886|pid:none) Drosophila yakuba clone yak-em_CG1... 138 3e-31
FN392321_244(FN392321|pid:none) Pichia pastoris GS115 chromosome... 137 4e-31
AP008207_1908(AP008207|pid:none) Oryza sativa (japonica cultivar... 137 5e-31
BT077226_1(BT077226|pid:none) Caligus rogercresseyi clone crog-e... 137 5e-31
AY751574_1(AY751574|pid:none) Phytophthora infestans putative nu... 137 5e-31
BT076443_1(BT076443|pid:none) Caligus rogercresseyi clone crog-e... 137 5e-31
GN103017_1(GN103017|pid:none) Sequence 7798 from Patent WO200903... 137 6e-31
AY751571_1(AY751571|pid:none) Phytophthora infestans putative nu... 136 8e-31
AY751569_1(AY751569|pid:none) Phytophthora infestans putative nu... 136 8e-31
(Q07800) RecName: Full=Phosphatase PSR1; EC=3.1.3.-; Al... 136 1e-30
CR382126_674(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 135 1e-30
AE017344_294(AE017344|pid:none) Cryptococcus neoformans var. neo... 135 2e-30
BT061679_1(BT061679|pid:none) Zea mays full-length cDNA clone ZM... 135 2e-30
AY751576_1(AY751576|pid:none) Phytophthora sojae nuclear LIM fac... 135 2e-30
CR380950_140(CR380950|pid:none) Candida glabrata strain CBS138 c... 135 2e-30
CU928174_440(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 134 3e-30
AC092559_4(AC092559|pid:none) Oryza sativa chromosome 3 BAC OSJN... 134 3e-30
CR382129_102(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 134 4e-30
BT084296_1(BT084296|pid:none) Zea mays full-length cDNA clone ZM... 134 5e-30
CU928166_133(CU928166|pid:none) Kluyveromyces thermotolerans str... 133 7e-30
AY751570_1(AY751570|pid:none) Phytophthora infestans putative nu... 133 7e-30
EU963251_1(EU963251|pid:none) Zea mays clone 259804 CTD-phosphat... 132 1e-29
AY751578_1(AY751578|pid:none) Phytophthora sojae nuclear LIM fac... 132 1e-29
AP003222_18(AP003222|pid:none) Oryza sativa Japonica Group genom... 132 2e-29
AK053513_1(AK053513|pid:none) Mus musculus 0 day neonate eyeball... 130 5e-29
AK163262_1(AK163262|pid:none) Mus musculus 2 cells egg cDNA, RIK... 130 5e-29
AF161478_1(AF161478|pid:none) Homo sapiens HSPC129 mRNA, complet... 130 5e-29
(Q05D32) RecName: Full=CTD small phosphatase-like protein 2; ... 130 5e-29
CR627421_1(CR627421|pid:none) Homo sapiens mRNA; cDNA DKFZp781F2... 130 5e-29
BC105903_1(BC105903|pid:none) Rattus norvegicus CTD (carboxy-ter... 130 5e-29
AF161543_1(AF161543|pid:none) Homo sapiens HSPC058 mRNA, complet... 130 5e-29
AY364237_1(AY364237|pid:none) Homo sapiens clone peg2042 hypothe... 130 5e-29
AL845457_2(AL845457|pid:none) Mouse DNA sequence from clone RP23... 130 5e-29
(A4QNX6) RecName: Full=CTD small phosphatase-like protein 2-B; ... 130 6e-29
(Q5F3Z7) RecName: Full=CTD small phosphatase-like protein 2; ... 130 8e-29
AJ851503_1(AJ851503|pid:none) Gallus gallus mRNA for hypothetica... 130 8e-29
(Q08BB5) RecName: Full=CTD small phosphatase-like protein 2-A; ... 129 1e-28
AY341861_1(AY341861|pid:none) Hordeum vulgare subsp. vulgare CTD... 129 1e-28
(Q801R4) RecName: Full=CTD small phosphatase-like protein 2-A; ... 129 1e-28
(Q66KM5) RecName: Full=CTD small phosphatase-like protein 2; ... 129 1e-28
BC123379_1(BC123379|pid:none) Xenopus laevis CTD small phosphata... 129 1e-28
T18721(T18721)hypothetical protein B0379.4 - Caenorhabditis eleg... 128 2e-28
EU637892_1(EU637892|pid:none) Caenorhabditis brenneri clone 2C5.... 128 3e-28
CR954214_341(CR954214|pid:none) Ostreococcus tauri strain OTTH05... 125 1e-27
AK117371_1(AK117371|pid:none) Arabidopsis thaliana At5g46410 mRN... 125 2e-27
AY074261_1(AY074261|pid:none) Arabidopsis thaliana unknown prote... 125 2e-27
FM992691_117(FM992691|pid:none) Candida dubliniensis CD36 chromo... 123 7e-27
CR382134_129(CR382134|pid:none) Debaryomyces hansenii strain CBS... 122 2e-26
AC105379_53(AC105379|pid:none) Trypanosoma brucei chromosome 3 c... 122 2e-26
AC008030_16(AC008030|pid:none) Arabidopsis thaliana chromosome I... 121 3e-26
AY809435_1(AY809435|pid:none) Schistosoma japonicum SJCHGC04904 ... 120 6e-26
FN357467_9(FN357467|pid:none) Schistosoma mansoni genome sequenc... 118 2e-25
AK342032_1(AK342032|pid:none) Acyrthosiphon pisum ACYPI006108 mR... 117 4e-25
AM502243_213(AM502243|pid:none) Leishmania infantum chromosome 25. 117 5e-25
BC095870_1(BC095870|pid:none) Danio rerio zgc:113169, mRNA (cDNA... 117 7e-25
(Q9N4V4) RecName: Full=CTD small phosphatase-like protein 3; ... 117 7e-25
AL844504_156(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 114 4e-24
AM910992_169(AM910992|pid:none) Plasmodium knowlesi strain H chr... 114 6e-24
FN392320_260(FN392320|pid:none) Pichia pastoris GS115 chromosome... 114 6e-24
AB012245_9(AB012245|pid:none) Arabidopsis thaliana genomic DNA, ... 109 1e-22
(Q4WI16) RecName: Full=Mitochondrial import inner membrane trans... 104 3e-21
AM920433_382(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 103 6e-21
CP000583_460(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 103 8e-21
(Q02776) RecName: Full=Mitochondrial import inner membrane trans... 103 8e-21
BC122182_1(BC122182|pid:none) Danio rerio CTD (carboxy-terminal ... 101 4e-20
AC135918_3(AC135918|pid:none) Oryza sativa (japonica cultivar-gr... 101 4e-20
CR954203_454(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 100 7e-20
CU928178_384(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 100 9e-20
AK066990_1(AK066990|pid:none) Oryza sativa Japonica Group cDNA c... 99 1e-19
AM270139_49(AM270139|pid:none) Aspergillus niger contig An07c022... 99 2e-19
(Q6CM45) RecName: Full=Mitochondrial import inner membrane trans... 97 7e-19
(Q59W44) RecName: Full=Mitochondrial import inner membrane trans... 96 2e-18
FM992688_1035(FM992688|pid:none) Candida dubliniensis CD36 chrom... 96 2e-18
(Q4I099) RecName: Full=Mitochondrial import inner membrane trans... 96 2e-18
AY751580_1(AY751580|pid:none) Phytophthora sojae putative nuclea... 96 2e-18
AP007166_209(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 94 5e-18
(O13636) RecName: Full=Mitochondrial import inner membrane trans... 92 2e-17
AY751573_1(AY751573|pid:none) Phytophthora infestans putative nu... 92 3e-17
(Q4PEW9) RecName: Full=Mitochondrial import inner membrane trans... 88 4e-16
AK340898_1(AK340898|pid:none) Acyrthosiphon pisum ACYPI005236 mR... 87 1e-15
(Q5KNV7) RecName: Full=Mitochondrial import inner membrane trans... 87 1e-15
EU960841_1(EU960841|pid:none) Zea mays clone 228984 CTD small ph... 86 2e-15
BT037327_1(BT037327|pid:none) Zea mays full-length cDNA clone ZM... 86 2e-15
(Q75A73) RecName: Full=Mitochondrial import inner membrane trans... 85 3e-15
(Q9V9P3) RecName: Full=Mitochondrial import inner membrane trans... 85 4e-15
BC067634_1(BC067634|pid:none) Danio rerio translocase of inner m... 81 4e-14
(Q6NWD4) RecName: Full=Mitochondrial import inner membrane trans... 81 4e-14
AL110123_11(AL110123|pid:none) Arabidopsis thaliana DNA chromoso... 80 1e-13
AC130604_12(AC130604|pid:none) Oryza sativa (japonica cultivar-g... 79 2e-13
FN357339_44(FN357339|pid:none) Schistosoma mansoni genome sequen... 79 3e-13
(Q5S7T7) RecName: Full=Mitochondrial import inner membrane trans... 78 3e-13
AY811455_1(AY811455|pid:none) Schistosoma japonicum SJCHGC03357 ... 78 3e-13
AY751581_1(AY751581|pid:none) Phytophthora sojae putative nuclea... 78 5e-13
BT042785_1(BT042785|pid:none) Zea mays full-length cDNA clone ZM... 78 5e-13
EU967553_1(EU967553|pid:none) Zea mays clone 304391 import inner... 78 5e-13
(Q9D880) RecName: Full=Mitochondrial import inner membrane trans... 77 8e-13
(Q9W4V8) RecName: Full=Mitochondrial import inner membrane trans... 77 8e-13
AF130109_1(AF130109|pid:none) Homo sapiens clone FLB5740 PRO1512... 76 1e-12
AB010698_20(AB010698|pid:none) Arabidopsis thaliana genomic DNA,... 76 1e-12
(Q3ZCQ8) RecName: Full=Mitochondrial import inner membrane trans... 76 1e-12
(Q5RAJ8) RecName: Full=Mitochondrial import inner membrane trans... 76 1e-12
AY444561_1(AY444561|pid:none) Homo sapiens TIM50L mRNA, complete... 76 1e-12
BT026310_1(BT026310|pid:none) Bos taurus translocase of inner mi... 76 1e-12
BC010736_1(BC010736|pid:none) Homo sapiens translocase of inner ... 76 1e-12
EF214846_1(EF214846|pid:none) Callithrix jacchus clone A06-46.3_... 76 1e-12
(Q61JS7) RecName: Full=Mitochondrial import inner membrane trans... 75 2e-12
(Q22647) RecName: Full=Mitochondrial import inner membrane trans... 75 2e-12
BC158346_1(BC158346|pid:none) Xenopus tropicalis hypothetical pr... 75 2e-12
(Q9W0S3) RecName: Full=Mitochondrial import inner membrane trans... 75 3e-12
CP001328_505(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 74 5e-12
BC070846_1(BC070846|pid:none) Xenopus laevis hypothetical protei... 74 7e-12
BT034462_1(BT034462|pid:none) Zea mays full-length cDNA clone ZM... 69 2e-10
AP008211_1968(AP008211|pid:none) Oryza sativa (japonica cultivar... 69 2e-10
AJ871339_1(AJ871339|pid:none) Nyctotherus ovalis partial gene fo... 68 4e-10
AC002304_15(AC002304|pid:none) Genomic sequence for Arabidopsis ... 65 3e-09
AM910996_33(AM910996|pid:none) Plasmodium knowlesi strain H chro... 65 3e-09
AY089295_1(AY089295|pid:none) Drosophila melanogaster AT08867 fu... 62 3e-08
AL022072_21(AL022072|pid:none) S.pombe chromosome II cosmid c8D2. 60 8e-08
AL021728_7(AL021728|pid:none) Drosophila melanogaster cosmid clo... 59 2e-07
AY341983_1(AY341983|pid:none) Drosophila miranda CG2713-like pro... 57 8e-07
AM494969_16(AM494969|pid:none) Leishmania braziliensis chromosom... 55 2e-06
AM450165_1(AM450165|pid:none) Vitis vinifera contig VV78X006954.... 55 4e-06
AM502254_45(AM502254|pid:none) Leishmania infantum chromosome 36. 54 5e-06
CT005272_703(CT005272|pid:none) Leishmania major strain Friedlin... 53 2e-05
AM494972_714(AM494972|pid:none) Leishmania braziliensis chromoso... 53 2e-05
(Q8SV03) RecName: Full=RNA polymerase II subunit A C-terminal do... 50 1e-04
AM920428_969(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 50 1e-04
CR548612_381(CR548612|pid:none) Paramecium tetraurelia macronucl... 49 3e-04
AC104642_8(AC104642|pid:none) Trypanosoma brucei chromosome 3 cl... 47 9e-04
AC125735_87(AC125735|pid:none) Leishmania major strain Friedlin ... 47 9e-04
AK221878_1(AK221878|pid:none) Arabidopsis thaliana mRNA for hypo... 47 9e-04
AM494971_23(AM494971|pid:none) Leishmania braziliensis chromosom... 47 0.001
CR382131_136(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 46 0.001
AM494971_254(AM494971|pid:none) Leishmania braziliensis chromoso... 46 0.001
AM494966_237(AM494966|pid:none) Leishmania braziliensis chromoso... 46 0.001
AP003274_25(AP003274|pid:none) Oryza sativa Japonica Group genom... 46 0.002
AC186752_7(AC186752|pid:none) Musa acuminata clone MA4_64C22, co... 45 0.003
AM494957_128(AM494957|pid:none) Leishmania braziliensis chromoso... 45 0.003
AM502252_120(AM502252|pid:none) Leishmania infantum chromosome 34. 45 0.004
CT005271_409(CT005271|pid:none) Leishmania major strain Friedlin... 45 0.004
AM425550_1(AM425550|pid:none) Vitis vinifera contig VV78X113783.... 43 0.012
CP000501_352(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 43 0.012
AM494961_29(AM494961|pid:none) Leishmania braziliensis chromosom... 42 0.021
AM270016_9(AM270016|pid:none) Aspergillus niger contig An02c0210... 42 0.021
CP000583_410(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.028
CP000080_247(CP000080|pid:none) Leishmania major strain Friedlin... 41 0.062
AM494970_97(AM494970|pid:none) Leishmania braziliensis chromosom... 41 0.062
AP000413_13(AP000413|pid:none) Arabidopsis thaliana genomic DNA,... 40 0.11
AM502251_80(AM502251|pid:none) Leishmania infantum chromosome 33. 40 0.14
(Q9Y5B0) RecName: Full=RNA polymerase II subunit A C-terminal do... 39 0.18
AF154115_1(AF154115|pid:none) Homo sapiens RNA polymerase II CTD... 39 0.18
(Q7TSG2) RecName: Full=RNA polymerase II subunit A C-terminal do... 39 0.18
BC063447_1(BC063447|pid:none) Homo sapiens CTD (carboxy-terminal... 39 0.18
AE017349_427(AE017349|pid:none) Cryptococcus neoformans var. neo... 39 0.18
AY678298_1(AY678298|pid:none) Lycopersicon esculentum clone 56B2... 39 0.23
CT005270_96(CT005270|pid:none) Leishmania major strain Friedlin,... 39 0.31
AM429611_3(AM429611|pid:none) Vitis vinifera contig VV78X048836.... 39 0.31
CR762118_1(CR762118|pid:none) Xenopus tropicalis finished cDNA, ... 38 0.40
AL844509_541(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.52
CR940348_16(CR940348|pid:none) Theileria annulata strain Ankara ... 37 0.68
EF133465_108(EF133465|pid:none) Heliothis virescens ascovirus 3e... 37 0.68
AM910993_153(AM910993|pid:none) Plasmodium knowlesi strain H chr... 37 0.89
(Q9P376) RecName: Full=RNA polymerase II subunit A C-terminal do... 37 0.89
AC120986_3(AC120986|pid:none) Oryza sativa (japonica cultivar-gr... 37 0.89
CU928167_157(CU928167|pid:none) Kluyveromyces thermotolerans str... 37 1.2
CP000079_225(CP000079|pid:none) Leishmania major strain Friedlin... 37 1.2
AM502245_177(AM502245|pid:none) Leishmania infantum chromosome 27. 37 1.2
AM471800_2(AM471800|pid:none) Vitis vinifera contig VV78X151157.... 36 1.5
DQ643392_104(DQ643392|pid:none) Aedes taeniorhynchus iridescent ... 36 1.5
CR380959_126(CR380959|pid:none) Candida glabrata strain CBS138 c... 36 2.0
AC117072_26(AC117072|pid:none) Dictyostelium discoideum chromoso... 35 2.6
AC103580_43(AC103580|pid:none) Trypanosoma brucei chromosome 4 c... 35 3.4
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos... 34 5.8
AC149492_17(AC149492|pid:none) Medicago truncatula clone mth2-99... 34 5.8
AE016815_84(AE016815|pid:none) Ashbya gossypii (= Eremothecium g... 34 5.8
AY380826_147(AY380826|pid:none) Lymphocystis disease virus - iso... 34 5.8
BA000022_396(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA, ... 33 9.8
AM398843_109(AM398843|pid:none) Spodoptera frugiperda ascovirus ... 33 9.8

>BC082639_1(BC082639|pid:none) Xenopus laevis Dullard homolog, mRNA
(cDNA clone MGC:81552 IMAGE:6862930), complete cds.
Length = 244

Score = 160 bits (405), Expect = 5e-38
Identities = 81/170 (47%), Positives = 118/170 (69%), Gaps = 9/170 (5%)
Frame = -2

Query: 863 ETLVHS--------TLKPVTHHQITVKVLIEDMDCTFYVIKRPHVDYFLEKVSQWYDIVI 708
ETL+HS T++P T +KV+I+ F+V KRPHVD+FLE VSQWY++V+
Sbjct: 70 ETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVV 129

Query: 707 FTASMQQYADPLLDQLDTHK-VFKKRLFRDSCLEKHGNFVKDLSMIDQDLTSTIIIDNSP 531
FTASM+ Y + D+LD +K V ++R +R C + G+++KDLS++ DL+S +I+DNSP
Sbjct: 130 FTASMEIYGSAVADKLDNNKAVLRRRFYRQHCTLELGSYIKDLSVVHSDLSSVVILDNSP 189

Query: 530 IAYSNNLENALPIDNWMGDNPSDTSLLSLLPFLEMIRHVQDVRSILSLRL 381
AY ++ +NA+PI +W D PSDT+LL+LLP L+ +R DVRS+LS L
Sbjct: 190 GAYRSHPDNAIPIKSWFSD-PSDTALLNLLPMLDALRFTADVRSVLSRNL 238

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 869,260,182
Number of extensions: 14017520
Number of successful extensions: 37648
Number of sequences better than 10.0: 229
Number of HSP's gapped: 37428
Number of HSP's successfully gapped: 231
Length of query: 296
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 169
Effective length of database: 640,137,871
Effective search space: 108183300199
Effective search space used: 108183300199
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.00 gvh: 0.80 alm: 0.05 top: 0.07 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.28 leu: 0.56 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for Contig-U12196-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 5
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0