Contig-U12196-1 |
Contig ID |
Contig-U12196-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
878 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
6 |
Number of EST |
8 |
Link to clone list |
U12196 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12196-1 (Contig-U12196-1Q) /CSM_Contig/Contig-U12196-1Q.Seq.d (888 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU037597) Dictyostelium discoideum slug cDNA, clone SSD833. 500 0.0 2 (BJ346916) Dictyostelium discoideum cDNA clone:dda25d15, 3' ... 500 0.0 3 (C91404) Dictyostelium discoideum slug cDNA, clone SSK174. 460 0.0 2 (C84232) Dictyostelium discoideum slug cDNA, clone SSB356. 454 e-177 2 (C91237) Dictyostelium discoideum slug cDNA, clone SSJ480. 468 e-127 1 (BJ366459) Dictyostelium discoideum cDNA clone:ddc39e06, 5' ... 432 e-116 1 (AU071632) Dictyostelium discoideum slug cDNA, clone SSC152. 349 1e-91 1 (BJ380709) Dictyostelium discoideum cDNA clone:ddc39e06, 3' ... 232 2e-56 1 (AU071377) Dictyostelium discoideum slug cDNA, clone SSB356. 46 0.037 2 (CT780552) Paramecium tetraurelia 5-PRIME EST from clone LK0... 50 0.14 1 (BP515659) Hydra magnipapillata cDNA, clone:hmp_11828. 42 1.3 2 (BQ599786) MI-P-E6-ahn-g-09-1-UM.s1 MI-P-E6 Sus scrofa cDNA ... 44 1.5 2 (AC192790) Gallus gallus BAC clone CH261-37L5 from chromosom... 46 2.2 1 (AC169489) Loxodonta africana clone VMRC15-227O9, WORKING DR... 46 2.2 1 (CU582827) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2 (CU462844) Zebrafish DNA sequence from clone CH1073-51A17 in... 34 4.7 2 (DC224790) Plasmodium berghei strain ANKA cDNA clone:SG00088... 30 5.4 3 (AC117816) Mus musculus chromosome 19, clone RP24-573C13, co... 44 8.9 1 (CU407026) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.9 1 (CT827947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.9 1 (AC201320) Strongylocentrotus purpuratus clone R3-16L14, WOR... 44 8.9 1 (AC201297) Strongylocentrotus purpuratus clone R3-16H21, WOR... 44 8.9 1 (AC180656) Strongylocentrotus purpuratus clone R3-3019N12, W... 44 8.9 1 (AC179954) Strongylocentrotus purpuratus clone R3-20M16, WOR... 44 8.9 1 (AC179279) Strongylocentrotus purpuratus clone R3-1105L03, W... 44 8.9 1 (AC178782) Strongylocentrotus purpuratus clone R3-2A5, WORKI... 44 8.9 1 (AC177304) Strongylocentrotus purpuratus clone R3-1033E17, W... 44 8.9 1 (BH432623) BOGDP10TR BOGD Brassica oleracea genomic clone BO... 44 8.9 1 (ER303350) 1092343723909 Global-Ocean-Sampling_GS-34-01-01-1... 44 8.9 1 (EJ487331) 1095403512301 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.9 1 (EJ415060) 1093012176011 Global-Ocean-Sampling_GS-28-01-01-1... 44 8.9 1 (EJ055610) 1095456026675 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1 (EJ017342) 1095439019745 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1 (EJ006878) 1091139282968 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1 (EB554884) AGENCOURT_51204123 D. virilis EST Drosophila viri... 44 8.9 1 (AV126216) Mus musculus 11-day embryo cDNA, partial sequence... 44 8.9 1 (CU695798) Phaeodactylum tricornutum mRNA 5-prime sequence f... 44 8.9 1 (AJ516465) Mytilus galloprovincialis EST, clone GPPD00438. 44 8.9 1 (CF447714) EST684059 normalized cDNA library of onion Allium... 44 8.9 1 (EW536143) rret32_m3.y1 ret Sus scrofa cDNA 5', mRNA sequence. 44 8.9 1 (EW533883) rret05_g24.y1 ret Sus scrofa cDNA 5', mRNA sequence. 44 8.9 1 (EW196620) rpfco0113_j5.y1 fco Sus scrofa cDNA 5', mRNA sequ... 44 8.9 1 (EW190785) rpfco0139_c14.y1 fco Sus scrofa cDNA 5', mRNA seq... 44 8.9 1 (EW190192) rpfco0136_c18.y1 fco Sus scrofa cDNA 5', mRNA seq... 44 8.9 1 (CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 44 8.9 1 (CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 44 8.9 1 (CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 44 8.9 1
>(AU037597) Dictyostelium discoideum slug cDNA, clone SSD833. Length = 623
Score = 500 bits (252), Expect(2) = 0.0 Identities = 252/252 (100%) Strand = Plus / Minus
Query: 383 acctcaaagagaggatacttctaacatcttgaacatgtctaatcatttccaagaatggta 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 acctcaaagagaggatacttctaacatcttgaacatgtctaatcatttccaagaatggta 447
Query: 443 acaatgataacaaagaagtatcagatggattatcacccatccaattatcaattggtaaag 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 acaatgataacaaagaagtatcagatggattatcacccatccaattatcaattggtaaag 387
Query: 503 cattttcaaggttattcgagtatgcaattggtgaattatcaataataatagttgaagtta 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 cattttcaaggttattcgagtatgcaattggtgaattatcaataataatagttgaagtta 327
Query: 563 aatcttgatcaatcatcgataaatcttttacgaaatttccatgtttttctaaacaagaat 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 aatcttgatcaatcatcgataaatcttttacgaaatttccatgtttttctaaacaagaat 267
Query: 623 ctctaaataatc 634 |||||||||||| Sbjct: 266 ctctaaataatc 255
Score = 490 bits (247), Expect(2) = 0.0 Identities = 247/247 (100%) Strand = Plus / Minus
Query: 642 gaaaactttatgagtatctaattgatcgagtaatggatcggcatattgttgcatactggc 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 gaaaactttatgagtatctaattgatcgagtaatggatcggcatattgttgcatactggc 188
Query: 702 agtgaaaattactatatcgtaccattgtgaaaccttttccaaaaagtaatcaacatgtgg 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 agtgaaaattactatatcgtaccattgtgaaaccttttccaaaaagtaatcaacatgtgg 128
Query: 762 tcttttaataacataaaatgtacaatccatatcttcaattaaaactttaactgtaatttg 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 tcttttaataacataaaatgtacaatccatatcttcaattaaaactttaactgtaatttg 68
Query: 822 atgatgtgttactggttttaatgttgaatgaactaaagtttcaccaaatctaaaattaat 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 atgatgtgttactggttttaatgttgaatgaactaaagtttcaccaaatctaaaattaat 8
Query: 882 gttttct 888 ||||||| Sbjct: 7 gttttct 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 615,676,519 Number of extensions: 35290716 Number of successful extensions: 2673918 Number of sequences better than 10.0: 48 Length of query: 888 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 864 Effective length of database: 97,308,875,965 Effective search space: 84074868833760 Effective search space used: 84074868833760 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
5 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |