Contig-U12194-1 |
Contig ID |
Contig-U12194-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1863 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
2820285 |
End point |
2818688 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
14 |
Number of EST |
15 |
Link to clone list |
U12194 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d (1873 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ402294) Dictyostelium discoideum cDNA clone:dds16m01, 3' ... 1497 0.0 2 (BJ344328) Dictyostelium discoideum cDNA clone:dda18l01, 3' ... 1473 0.0 1 (BJ431600) Dictyostelium discoideum cDNA clone:ddv14c24, 3' ... 1465 0.0 1 (BJ343132) Dictyostelium discoideum cDNA clone:dda22j04, 3' ... 1364 0.0 1 (BJ343463) Dictyostelium discoideum cDNA clone:dda16m02, 3' ... 1346 0.0 2 (BJ345353) Dictyostelium discoideum cDNA clone:dda23n11, 3' ... 1292 0.0 2 (BJ432754) Dictyostelium discoideum cDNA clone:ddv19o13, 3' ... 1291 0.0 1 (C90211) Dictyostelium discoideum slug cDNA, clone SSI381. 1211 0.0 2 (BJ344561) Dictyostelium discoideum cDNA clone:dda19b21, 3' ... 1183 0.0 4 (BJ345982) Dictyostelium discoideum cDNA clone:dda29o17, 3' ... 1136 0.0 1 (BJ413241) Dictyostelium discoideum cDNA clone:ddv14c24, 5' ... 1124 0.0 2 (BJ378675) Dictyostelium discoideum cDNA clone:ddc32a13, 3' ... 1118 0.0 2 (C25652) Dictyostelium discoideum slug cDNA, clone SSA877. 946 0.0 2 (AU037688) Dictyostelium discoideum slug cDNA, clone SSE175. 825 0.0 2 (AU261445) Dictyostelium discoideum vegetative cDNA clone:VS... 133 1e-78 3 (AU072788) Dictyostelium discoideum slug cDNA, clone SSA877. 56 4e-07 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.002 18 (BH147579) ENTQK25TR Entamoeba histolytica Sheared DNA Entam... 40 0.026 4 (AC117080) Dictyostelium discoideum chromosome 2 map complem... 40 0.036 9 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 44 0.065 10 (AL844509) Plasmodium falciparum chromosome 13. 52 0.078 1 (CA854593) PfESToac33d05.y1 Plasmodium falciparum 3D7 gameto... 52 0.078 1 (FC144214) 1106908559436 BABEVPN-C-01-1-7KB Papio anubis cDN... 50 0.31 1 (AJ969074) Spiroplasma citri plasmid pSci6. 36 0.37 6 (AQ254531) CpG0681B CpIOWAgDNA1 Cryptosporidium parvum genom... 46 0.50 2 (EH076766) PMDBF87TR Perkinsus marinus small insert cDNA lib... 48 0.54 2 (AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 34 0.54 12 (AC177373) Strongylocentrotus purpuratus clone R3-1031P07, W... 38 0.68 2 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.77 13 (ET910988) CHO_OF459xo18f2.ab1 CHO_OF Nicotiana tabacum geno... 38 1.1 3 (EJ235544) 1092405900250 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.2 2 (CU459162) Zebrafish DNA sequence from clone CH73-50D8 in li... 48 1.2 1 (AX488742) Sequence 6042 from Patent WO02053728. 48 1.2 1 (BX538353) Cryptosporidium parvum chromosome 6, complete seq... 48 1.2 1 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 48 1.2 1 (AY686477) Mus musculus strain 129S6/SvEvTac chromosome 6 cl... 48 1.2 1 (AY686476) Mus musculus strain 129S6/SvEvTac chromosome 6 cl... 48 1.2 1 (EV027981) BNSCS2CT_UP_166_H08_27APR2007_050 Brassica napus ... 48 1.2 1 (EV025654) BNSCS2CT_UP_136_D11_21APR2007_089 Brassica napus ... 48 1.2 1 (ES610393) m28d05 American mink brain Neovison vison cDNA cl... 48 1.2 1 (EE474227) BNYS2DCT_UP_010_H06_28FEB2005_034 Brassica napus ... 48 1.2 1 (CO453852) MZCCL10199A10.g Maize Endosperm cDNA Library Zea ... 48 1.2 1 (CO449713) MZCCL10140C09.g Maize Endosperm cDNA Library Zea ... 48 1.2 1 (CD813632) BN15.020G07F020211 BN15 Brassica napus cDNA clone... 48 1.2 1 (CD078359) MA3-9999U-L237-E03-U.G MA3-0001 Schistosoma manso... 48 1.2 1 (CD078275) MA3-9999U-L236-E03-U.G MA3-0001 Schistosoma manso... 48 1.2 1 (BG008645) PM4-GN0304-291100-003-h11 GN0304 Homo sapiens cDN... 48 1.2 1 (FL641447) TS04-F9 Reticulitermes flavipes symbiont library ... 48 1.2 1 (FF562517) MUSRQ60TF MUSR Musa acuminata cDNA 5', mRNA seque... 48 1.2 1 (FF561475) MUSRL15TF MUSR Musa acuminata cDNA 5', mRNA seque... 48 1.2 1 (FF147889) Sm27A9 Cell cultures of Saussurea medusa Saussure... 48 1.2 1 (FD714445) CAAA1832.fwd CAAA Petromyzon marinus Petromyzon m... 48 1.2 1 (AC226830) Medicago truncatula chromosome 7 clone mth2-51d18... 40 1.6 6 (AC215400) Solanum lycopersicum chromosome 2 clone C02HBa015... 40 2.1 5 (DY888516) CeleSEQ5588 Cunninghamella elegans pBluescript (E... 40 2.2 3 (AF494214) Medicago truncatula calmodulin-like protein 3 mRN... 36 2.2 2 (DY886485) CeleSEQ2157 Cunninghamella elegans pBluescript (E... 40 2.3 3 (AP010198) Lotus japonicus genomic DNA, chromosome 3, clone:... 40 2.8 4 (AB073976) Pichia anomala gene for Na+/H+ exchanger HaNHA1, ... 36 3.0 2 (CT030626) Xenopus tropicalis finished cDNA, clone TNeu139b17. 46 4.8 1 (BX324205) Zebrafish DNA sequence from clone CH211-10K1 in l... 46 4.8 1 (BX324116) Zebrafish DNA sequence from clone CH211-114G7 in ... 46 4.8 1 (BC135122) Xenopus tropicalis hypothetical protein LOC447970... 46 4.8 1 (BC092362) Danio rerio zgc:113229, mRNA (cDNA clone MGC:1132... 46 4.8 1 (BV300519) S239P697FF6.T0 ChinaGrayWolf Canis lupus STS geno... 46 4.8 1 (AC186392) Pan troglodytes BAC clone CH251-425I12 from chrom... 46 4.8 1 (AB174685) Macaca fascicularis brain cDNA clone: QtrA-18687,... 46 4.8 1 (AY842945) Metarhizium anisopliae clone Ma307 microsatellite... 46 4.8 1 (AM447227) Vitis vinifera contig VV78X262419.4, whole genome... 46 4.8 1 (EA327721) Sequence 17 from patent US 7306910. 46 4.8 1 (EA117655) Sequence 1839 from patent US 7205146. 46 4.8 1 (EA117654) Sequence 1838 from patent US 7205146. 46 4.8 1 (EA117653) Sequence 1837 from patent US 7205146. 46 4.8 1 (DI001559) Breast Cancer Prognostics. 46 4.8 1 (DD090877) Breast Cancer Prognostics. 46 4.8 1 (CS741860) Sequence 9856 from Patent WO2005083127. 46 4.8 1 (CS350966) Sequence 350 from Patent WO2006013561. 46 4.8 1 (CQ895735) Sequence 17 from Patent EP1471154. 46 4.8 1 (CQ714159) Sequence 93 from Patent WO02068579. 46 4.8 1 (BD186258) STAT6 activating gene. 46 4.8 1 (AX540415) Sequence 27 from Patent WO02055738. 46 4.8 1 (AR447770) Sequence 374 from patent US 6673549. 46 4.8 1 (AR243553) Sequence 3 from patent US 6475797. 46 4.8 1 (AC147708) Canis Familiaris, clone XX-25G10, complete sequence. 46 4.8 1 (U12964) Caenorhabditis elegans cosmid F26F4, complete seque... 46 4.8 1 (X99717) H.sapiens mRNA for SRcyp protein. 46 4.8 1 (U69668) Human nuclear pore complex-associated protein TPR (... 46 4.8 1 (U40763) Human Clk-associated RS cyclophilin CARS-Cyp mRNA, ... 46 4.8 1 (BC111693) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1 (BC109373) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1 (BC073875) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1 (BC063711) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1 (BC001555) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1 (AL133553) Human DNA sequence from clone GS1-174L6 on chromo... 46 4.8 1 (AC226889) Homo sapiens FOSMID clone ABC14-1080022I15 from c... 46 4.8 1 (AC107389) Homo sapiens BAC clone RP11-509N15 from 4, comple... 46 4.8 1 (AC027058) Homo sapiens chromosome 4, clone RP11-481K13, com... 46 4.8 1 (AC016772) Homo sapiens BAC clone RP11-567N19 from 2, comple... 46 4.8 1 (AC012450) Homo sapiens BAC clone RP11-351J7 from 2, complet... 46 4.8 1 (AC119499) Rattus norvegicus clone CH230-311G15, *** SEQUENC... 46 4.8 1
>(BJ402294) Dictyostelium discoideum cDNA clone:dds16m01, 3' end, single read. Length = 775
Score = 1497 bits (755), Expect(2) = 0.0 Identities = 755/755 (100%) Strand = Plus / Minus
Query: 1009 tgactcattatttgctcaattagagaaagatcaatgttctgtcatgatggatccaagaca 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 775 tgactcattatttgctcaattagagaaagatcaatgttctgtcatgatggatccaagaca 716
Query: 1069 tcaaatcatgggtgttagattattagtaccaaataataaacaattagttgttgaagaaag 1128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 715 tcaaatcatgggtgttagattattagtaccaaataataaacaattagttgttgaagaaag 656
Query: 1129 attatcaaaatatgaaagtaaagatgaaacaatttataatttatttagactaagccaagg 1188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 attatcaaaatatgaaagtaaagatgaaacaatttataatttatttagactaagccaagg 596
Query: 1189 tataccacaaggtgttaaagaatatcaatggggaaatataattccattggaatataattt 1248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 tataccacaaggtgttaaagaatatcaatggggaaatataattccattggaatataattt 536
Query: 1249 cgatcttttaaatggtgtcgattttcataagggatgttatttaggccaagaattaacctc 1308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 cgatcttttaaatggtgtcgattttcataagggatgttatttaggccaagaattaacctc 476
Query: 1309 aagaacacatttcacaggtttaattagaaagagaattttcccagttgtaatgagtgttaa 1368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 aagaacacatttcacaggtttaattagaaagagaattttcccagttgtaatgagtgttaa 416
Query: 1369 agatgttgaaagtgctagtgtaatggatgaagcaatcatcgacccaacaaaaccaccaaa 1428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 agatgttgaaagtgctagtgtaatggatgaagcaatcatcgacccaacaaaaccaccaaa 356
Query: 1429 agaatcattactcttcccaaaacgtattctaaatgcattaaatcttgagcatccaccatc 1488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 agaatcattactcttcccaaaacgtattctaaatgcattaaatcttgagcatccaccatc 296
Query: 1489 agactctgcattaattgttaaaaatatctcaccaaaacataatcaacaacaatcatcaga 1548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 agactctgcattaattgttaaaaatatctcaccaaaacataatcaacaacaatcatcaga 236
Query: 1549 tgaacctgttaaagttggtactgatagtgaaattaaaacagtttcaagatcaaccgataa 1608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 tgaacctgttaaagttggtactgatagtgaaattaaaacagtttcaagatcaaccgataa 176
Query: 1609 attcattaccggtattcatggtgttggtttggcaatgttaaaagttgaaaacattgatat 1668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 attcattaccggtattcatggtgttggtttggcaatgttaaaagttgaaaacattgatat 116
Query: 1669 cttccaattagataatactgttgttcatgataaatcaaataaagaattaacagttttacc 1728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 cttccaattagataatactgttgttcatgataaatcaaataaagaattaacagttttacc 56
Query: 1729 accttgttggattagtaaattaacaagtttacaaa 1763 ||||||||||||||||||||||||||||||||||| Sbjct: 55 accttgttggattagtaaattaacaagtttacaaa 21
Score = 38.2 bits (19), Expect(2) = 0.0 Identities = 19/19 (100%) Strand = Plus / Minus
Query: 1764 gacaccacaacaagttagt 1782 ||||||||||||||||||| Sbjct: 19 gacaccacaacaagttagt 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,870,843,552 Number of extensions: 117583860 Number of successful extensions: 10386528 Number of sequences better than 10.0: 288 Length of query: 1873 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1849 Effective length of database: 97,308,875,965 Effective search space: 179924111659285 Effective search space used: 179924111659285 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
Query= Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d (1873 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AY139983_1(AY139983|pid:none) Arabidopsis thaliana putative prot... 137 2e-30 (Q7RYZ1) RecName: Full=Putative transferase caf-17, mitochondria... 133 3e-29 (A2R472) RecName: Full=Putative transferase caf17, mitochondrial... 133 3e-29 (Q4WVK5) RecName: Full=Putative transferase caf17, mitochondrial... 126 3e-27 AL049638_20(AL049638|pid:none) Arabidopsis thaliana DNA chromoso... 125 7e-27 (A1DDV0) RecName: Full=Putative transferase caf17, mitochondrial... 122 5e-26 CU633991_1(CU633991|pid:none) Zebrafish DNA sequence from clone ... 121 1e-25 CU633900_909(CU633900|pid:none) Podospora anserina genomic DNA c... 120 2e-25 (Q5T440) RecName: Full=Putative transferase C1orf69, mitochondri... 117 1e-24 (Q0UE25) RecName: Full=Putative transferase CAF17, mitochondrial... 116 2e-24 CP000774_748(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 116 2e-24 (Q6C8Y7) RecName: Full=Putative transferase CAF17, mitochondrial... 114 1e-23 EF107103_28(EF107103|pid:none) Uncultured marine bacterium HF10_... 112 6e-23 EU954436_1(EU954436|pid:none) Zea mays clone 1467019 aminomethyl... 109 3e-22 BA000040_2554(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 108 5e-22 CP000613_1618(CP000613|pid:none) Rhodospirillum centenum SW, com... 107 1e-21 DQ088851_2(DQ088851|pid:none) Uncultured bacterium eBACmed86H08 ... 106 3e-21 CP000084_617(CP000084|pid:none) Candidatus Pelagibacter ubique H... 106 3e-21 FN317596_1(FN317596|pid:none) Schistosoma japonicum isolate Anhu... 105 7e-21 CP000409_486(CP000409|pid:none) Rickettsia canadensis str. McKie... 105 7e-21 BC153524_1(BC153524|pid:none) Danio rerio zgc:153540, mRNA (cDNA... 103 2e-20 CT005263_173(CT005263|pid:none) Leishmania major strain Friedlin... 103 3e-20 BC124381_1(BC124381|pid:none) Danio rerio zgc:153540, mRNA (cDNA... 101 8e-20 CU234118_1931(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 101 8e-20 AE017197_437(AE017197|pid:none) Rickettsia typhi str. Wilmington... 101 1e-19 AX882299_1(AX882299|pid:none) Sequence 17204 from Patent EP10746... 100 1e-19 CP001096_1233(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 100 2e-19 CP000319_3786(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 100 2e-19 BX572596_120(BX572596|pid:none) Rhodopseudomonas palustris CGA00... 100 2e-19 (Q5KP91) RecName: Full=Putative transferase CAF17, mitochondrial... 99 7e-19 CR925677_82(CR925677|pid:none) Ehrlichia ruminantium str. Gardel... 98 9e-19 AM502228_13(AM502228|pid:none) Leishmania infantum chromosome 10. 97 2e-18 CR767821_96(CR767821|pid:none) Ehrlichia ruminantium strain Welg... 97 3e-18 AM999887_25(AM999887|pid:none) Wolbachia endosymbiont of Culex q... 97 3e-18 AJ235271_232(AJ235271|pid:none) Rickettsia prowazekii strain Mad... 95 1e-17 CP000230_2932(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 94 1e-17 CP000301_4275(CP000301|pid:none) Rhodopseudomonas palustris BisB... 94 2e-17 CP000847_759(CP000847|pid:none) Rickettsia akari str. Hartford, ... 93 4e-17 CP001280_1084(CP001280|pid:none) Methylocella silvestris BL2, co... 92 7e-17 FN357710_8(FN357710|pid:none) Schistosoma mansoni genome sequenc... 92 7e-17 CP001016_703(CP001016|pid:none) Beijerinckia indica subsp. indic... 90 2e-16 CP001340_389(CP001340|pid:none) Caulobacter crescentus NA1000, c... 89 4e-16 (Q6BPW7) RecName: Full=Putative transferase CAF17, mitochondrial... 88 1e-15 CP001391_375(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 88 1e-15 CP000471_3691(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 88 1e-15 AM889285_3266(AM889285|pid:none) Gluconacetobacter diazotrophicu... 87 2e-15 CP000463_4353(CP000463|pid:none) Rhodopseudomonas palustris BisA... 87 2e-15 AC159703_1(AC159703|pid:none) Trypanosoma brucei chromosome 8 cl... 87 2e-15 CP001325_289(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 87 2e-15 CP000927_4342(CP000927|pid:none) Caulobacter sp. K31, complete g... 86 5e-15 CP000697_261(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 86 5e-15 FN392320_1204(FN392320|pid:none) Pichia pastoris GS115 chromosom... 86 6e-15 Z81080_6(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 84 1e-14 CP000107_89(CP000107|pid:none) Ehrlichia canis str. Jake, comple... 84 1e-14 AM494475_1793(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 84 2e-14 BX897699_506(BX897699|pid:none) Bartonella henselae strain Houst... 84 2e-14 CP000908_4244(CP000908|pid:none) Methylobacterium extorquens PA1... 83 4e-14 CP000009_1959(CP000009|pid:none) Gluconobacter oxydans 621H, com... 82 5e-14 CP001612_606(CP001612|pid:none) Rickettsia africae ESF-5, comple... 82 5e-14 AE006914_698(AE006914|pid:none) Rickettsia conorii str. Malish 7... 82 9e-14 AP009384_401(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 82 9e-14 CP001227_654(CP001227|pid:none) Rickettsia peacockii str. Rustic... 82 9e-14 CP001562_526(CP001562|pid:none) Bartonella grahamii as4aup, comp... 81 2e-13 CP001510_4356(CP001510|pid:none) Methylobacterium extorquens AM1... 80 3e-13 CP001079_807(CP001079|pid:none) Anaplasma marginale str. Florida... 79 4e-13 CP000848_771(CP000848|pid:none) Rickettsia rickettsii str. 'Shei... 79 4e-13 BX897700_425(BX897700|pid:none) Bartonella quintana str. Toulous... 79 6e-13 CP000236_131(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan... 78 1e-12 CP000394_1986(CP000394|pid:none) Granulibacter bethesdensis CGDN... 78 1e-12 (Q75D53) RecName: Full=Putative transferase CAF17, mitochondrial... 77 2e-12 CP000284_1900(CP000284|pid:none) Methylobacillus flagellatus KT,... 77 3e-12 (A5DXC3) RecName: Full=Putative transferase CAF17, mitochondrial... 77 3e-12 CP001029_4721(CP001029|pid:none) Methylobacterium populi BJ001, ... 77 3e-12 BA000012_6137(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 76 4e-12 CP000655_962(CP000655|pid:none) Polynucleobacter necessarius sub... 76 4e-12 CP000030_811(CP000030|pid:none) Anaplasma marginale str. St. Mar... 76 4e-12 CP001349_671(CP001349|pid:none) Methylobacterium nodulans ORS 20... 76 5e-12 (A5DQ50) RecName: Full=Putative transferase CAF17, mitochondrial... 75 8e-12 CR954220_38(CR954220|pid:none) Ostreococcus tauri strain OTTH059... 75 1e-11 CP000377_1984(CP000377|pid:none) Silicibacter sp. TM1040, comple... 75 1e-11 CP000158_854(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 74 1e-11 CP000157_567(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 74 1e-11 (P47158) RecName: Full=Putative transferase CAF17, mitochondrial... 73 3e-11 CU928176_66(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 73 4e-11 CP000356_1414(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 72 7e-11 AP009153_596(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 71 2e-10 CP000282_2251(CP000282|pid:none) Saccharophagus degradans 2-40, ... 70 3e-10 CP000076_1420(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 70 3e-10 CP000450_1241(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 69 5e-10 CP001488_642(CP001488|pid:none) Brucella melitensis ATCC 23457 c... 69 8e-10 CP000887_612(CP000887|pid:none) Brucella abortus S19 chromosome ... 68 1e-09 AE014291_642(AE014291|pid:none) Brucella suis 1330 chromosome I,... 68 1e-09 CP001074_1452(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 67 2e-09 AL954747_1515(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 67 2e-09 CP001191_1004(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 66 4e-09 CP000943_1656(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 65 7e-09 CP000127_2373(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 65 9e-09 CP000438_4371(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 65 1e-08 CP000133_1385(CP000133|pid:none) Rhizobium etli CFN 42, complete... 64 1e-08 AE008692_1688(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 64 2e-08 CP000744_4707(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 63 4e-08 FM209186_4584(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 63 4e-08 CP001139_2124(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 62 7e-08 CP000628_1206(CP000628|pid:none) Agrobacterium radiobacter K84 c... 62 9e-08 CP001321_1566(CP001321|pid:none) Haemophilus parasuis SH0165, co... 62 9e-08 CP001281_2340(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 61 1e-07 AM181176_1419(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 60 2e-07 CP001150_1572(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 60 2e-07 CP001157_1316(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 60 2e-07 (Q6CRA2) RecName: Full=Putative transferase CAF17, mitochondrial... 60 3e-07 AM260479_1547(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 60 4e-07 CP000949_1062(CP000949|pid:none) Pseudomonas putida W619, comple... 59 5e-07 CP000577_1874(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 59 6e-07 CP000089_2179(CP000089|pid:none) Dechloromonas aromatica RCB, co... 59 8e-07 CP000116_2098(CP000116|pid:none) Thiobacillus denitrificans ATCC... 59 8e-07 AD2706(AD2706) hypothetical protein gcvT [imported] - Agrobacter... 58 1e-06 CU633749_1451(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 57 2e-06 CP000947_318(CP000947|pid:none) Haemophilus somnus 2336, complet... 57 2e-06 AY232221_1(AY232221|pid:none) Drosophila yakuba clone yak-ad_CG8... 57 2e-06 CR954246_691(CR954246|pid:none) Pseudoalteromonas haloplanktis s... 57 2e-06 CP000934_2156(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 57 2e-06 CP000436_1302(CP000436|pid:none) Haemophilus somnus 129PT, compl... 57 2e-06 CP000830_2080(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 57 2e-06 (B6EKN9) RecName: Full=tRNA-modifying protein ygfZ; &FM178379_2... 57 2e-06 CP000094_1356(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 56 4e-06 CP001389_843(CP001389|pid:none) Rhizobium sp. NGR234, complete g... 56 4e-06 CP000352_1823(CP000352|pid:none) Ralstonia metallidurans CH34, c... 56 5e-06 CP000103_1725(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 55 7e-06 AE002098_986(AE002098|pid:none) Neisseria meningitidis MC58, com... 55 1e-05 CP000661_1999(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 55 1e-05 BA000037_2842(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 54 2e-05 CT573326_3990(CT573326|pid:none) Pseudomonas entomophila str. L4... 53 3e-05 CP000644_3247(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 53 4e-05 (Q8DC85) RecName: Full=tRNA-modifying protein ygfZ; &AE016795_1... 52 6e-05 CP000381_1118(CP000381|pid:none) Neisseria meningitidis 053442, ... 52 7e-05 (Q7MHM7) RecName: Full=tRNA-modifying protein ygfZ; 52 7e-05 (A8GIQ4) RecName: Full=tRNA-modifying protein ygfZ; &CP000826_3... 52 1e-04 AM421808_1108(AM421808|pid:none) Neisseria meningitidis serogrou... 52 1e-04 CU695238_417(CU695238|pid:none) Ralstonia solanacearum strain Mo... 52 1e-04 (Q57K67) RecName: Full=tRNA-modifying protein ygfZ; &AE017220_2... 51 1e-04 CP000388_3133(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 51 1e-04 AE004439_1874(AE004439|pid:none) Pasteurella multocida subsp. mu... 51 1e-04 (Q89AC3) RecName: Full=tRNA-modifying protein ygfZ; &AE016826_3... 51 2e-04 (Q1LTU6) RecName: Full=tRNA-modifying protein ygfZ; &CP000238_1... 51 2e-04 CP000544_47(CP000544|pid:none) Halorhodospira halophila SL1, com... 51 2e-04 CP001013_1867(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 50 2e-04 CP000539_1649(CP000539|pid:none) Acidovorax sp. JS42, complete g... 50 2e-04 CP001392_1956(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 50 2e-04 EU896023_1(EU896023|pid:none) Escherichia coli strain TB182A hyp... 50 3e-04 CP001635_2817(CP001635|pid:none) Variovorax paradoxus S110 chrom... 50 3e-04 CP000302_2937(CP000302|pid:none) Shewanella denitrificans OS217,... 50 4e-04 CP000155_1707(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 50 4e-04 (Q9KPA1) RecName: Full=tRNA-modifying protein ygfZ; &AE003852_2... 49 5e-04 CP001052_1892(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 49 6e-04 AE017340_816(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 49 6e-04 CP000285_1817(CP000285|pid:none) Chromohalobacter salexigens DSM... 49 6e-04 AE014187_495(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 49 6e-04 CP000769_2760(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 49 8e-04 (A7FF28) RecName: Full=tRNA-modifying protein ygfZ; &(Q666S2) R... 48 0.001 CP001025_1786(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 48 0.001 CR555306_3074(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 48 0.001 CR940347_698(CR940347|pid:none) Theileria annulata strain Ankara... 48 0.001 CP000884_3377(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 48 0.001 (Q6D961) RecName: Full=tRNA-modifying protein ygfZ; &BX950851_7... 48 0.001 CP000086_2113(CP000086|pid:none) Burkholderia thailandensis E264... 47 0.002 CP001291_1945(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 47 0.002 CP000572_2300(CP000572|pid:none) Burkholderia pseudomallei 1106a... 47 0.002 (Q87LM8) RecName: Full=tRNA-modifying protein ygfZ; &BA000031_2... 47 0.002 CP001408_2364(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 47 0.002 CP000680_1453(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 47 0.002 CP000010_1221(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 47 0.002 CP000440_1824(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 47 0.002 CP000961_3847(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 47 0.002 BX294133_76(BX294133|pid:none) Rhodopirellula baltica SH 1 compl... 47 0.002 CP000821_3939(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 47 0.002 CP000507_2940(CP000507|pid:none) Shewanella amazonensis SB2B, co... 47 0.002 AP009385_1832(AP009385|pid:none) Burkholderia multivorans ATCC 1... 47 0.003 CP000512_3353(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 47 0.003 (Q7N1C0) RecName: Full=tRNA-modifying protein ygfZ; &BX571871_1... 47 0.003 CP001339_1443(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 47 0.003 AE015451_1411(AE015451|pid:none) Pseudomonas putida KT2440 compl... 47 0.003 CP000113_6180(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 46 0.004 (Q31WG0) RecName: Full=tRNA-modifying protein ygfZ; &CP000036_2... 46 0.004 CP000360_2624(CP000360|pid:none) Acidobacteria bacterium Ellin34... 46 0.004 CU468135_2792(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 46 0.005 FM954972_2494(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 46 0.005 (P44000) RecName: Full=Uncharacterized protein HI0466; &I64007(... 46 0.005 AE017282_234(AE017282|pid:none) Methylococcus capsulatus str. Ba... 46 0.005 CP000151_2006(CP000151|pid:none) Burkholderia sp. 383 chromosome... 45 0.007 (B7N7E2) RecName: Full=tRNA-modifying protein ygfZ; &CU928163_3... 45 0.007 (B1ITA4) RecName: Full=tRNA-modifying protein ygfZ; &CP000946_7... 45 0.009 (B7NW39) RecName: Full=tRNA-modifying protein ygfZ; &CU928164_3... 45 0.009 CP000614_1795(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 45 0.009 CP000958_1898(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 45 0.009 CP000380_695(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 45 0.009 (A7ZR07) RecName: Full=tRNA-modifying protein ygfZ; &(A8A439) R... 45 0.012 AY458642_63(AY458642|pid:none) Uncultured marine bacterium 560 c... 45 0.012 (Q0TDV3) RecName: Full=tRNA-modifying protein ygfZ; &CP000247_2... 45 0.012 CP000970_2934(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 45 0.012 CP001111_1533(CP001111|pid:none) Stenotrophomonas maltophilia R5... 45 0.012 CP001080_1124(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 45 0.012 (A1AF88) RecName: Full=tRNA-modifying protein ygfZ; &(B7MM85) R... 44 0.016 CP000057_518(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 44 0.020 CP001344_2310(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 44 0.020 CP001503_1315(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 44 0.020 EF089399_20(EF089399|pid:none) Uncultured marine bacterium EB0_3... 44 0.020 (Q3YXX2) RecName: Full=tRNA-modifying protein ygfZ; &CP000038_2... 44 0.027 (Q493E3) RecName: Full=tRNA-modifying protein ygfZ; &CP000016_2... 44 0.027 BA000021_437(BA000021|pid:none) Wigglesworthia glossinidia endos... 43 0.035 (B7LPB2) RecName: Full=tRNA-modifying protein ygfZ; &CU928158_2... 43 0.035 CP000503_801(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 43 0.045 (A7MTS4) RecName: Full=tRNA-modifying protein ygfZ; &CP000789_3... 42 0.059 CP000647_3262(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 42 0.059 CP000891_867(CP000891|pid:none) Shewanella baltica OS195, comple... 42 0.059 CP000304_1206(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 42 0.059 AM233362_1114(AM233362|pid:none) Francisella tularensis subsp. h... 42 0.077 CP000753_818(CP000753|pid:none) Shewanella baltica OS185, comple... 42 0.077 CP000393_4129(CP000393|pid:none) Trichodesmium erythraeum IMS101... 42 0.077 CP000924_1941(CP000924|pid:none) Thermoanaerobacter pseudethanol... 42 0.077 CP000804_3444(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 42 0.077 AP006725_4186(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 42 0.077 CP001252_836(CP001252|pid:none) Shewanella baltica OS223, comple... 42 0.077 (Q7VRF7) RecName: Full=tRNA-modifying protein ygfZ; &BX248583_2... 42 0.10 AE009442_320(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 42 0.10 A82728(A82728) conserved hypothetical protein XF1068 [imported] ... 42 0.10 AJ749949_1088(AJ749949|pid:none) Francisella tularensis subsp. t... 41 0.17 CP000915_982(CP000915|pid:none) Francisella tularensis subsp. me... 41 0.17 CP000563_3443(CP000563|pid:none) Shewanella baltica OS155, compl... 41 0.17 CP000444_3281(CP000444|pid:none) Shewanella sp. MR-7, complete g... 40 0.23 CP000951_1066(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 40 0.23 CP000875_3434(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 40 0.23 CP000446_715(CP000446|pid:none) Shewanella sp. MR-4, complete ge... 40 0.23 DQ366744_16(DQ366744|pid:none) Uncultured Prochlorococcus marinu... 40 0.38 (Q5WF30) RecName: Full=Aminomethyltransferase; EC=2.1.2... 40 0.38 (A7MR73) RecName: Full=tRNA-modifying protein ygfZ; &CP000783_4... 40 0.38 BA000022_2385(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 39 0.50 CT971583_280(CT971583|pid:none) Synechococcus WH7803 complete ge... 39 0.50 BX548174_284(BX548174|pid:none) Prochlorococcus marinus MED4 com... 39 0.50 CP000551_300(CP000551|pid:none) Prochlorococcus marinus str. AS9... 39 0.86 CP001337_1209(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 39 0.86 AE013598_2274(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 38 1.1 CP000967_2219(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 38 1.1 CP001032_503(CP001032|pid:none) Opitutus terrae PB90-1, complete... 38 1.5 CP000909_2560(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 38 1.5 AE008923_2038(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 37 1.9 CP001087_743(CP001087|pid:none) Desulfobacterium autotrophicum H... 37 2.5 CP001229_909(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 37 2.5 CR543861_637(CR543861|pid:none) Acinetobacter sp. ADP1 complete ... 37 2.5 AE017126_308(AE017126|pid:none) Prochlorococcus marinus subsp. m... 37 3.2 AE000657_1384(AE000657|pid:none) Aquifex aeolicus VF5, complete ... 37 3.2 AE000513_346(AE000513|pid:none) Deinococcus radiodurans R1 chrom... 37 3.2 AM039952_2239(AM039952|pid:none) Xanthomonas campestris pv. vesi... 37 3.2 AM910994_540(AM910994|pid:none) Plasmodium knowlesi strain H chr... 37 3.2 CP000975_2177(CP000975|pid:none) Methylacidiphilum infernorum V4... 37 3.2 DQ407063_1(DQ407063|pid:none) Helianthus annuus RNA polymerase b... 36 4.2 (Q1KXX0) RecName: Full=DNA-directed RNA polymerase subunit beta'... 36 4.2 CP000323_169(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 36 4.2 CP000082_159(CP000082|pid:none) Psychrobacter arcticus 273-4, co... 36 4.2 CP000713_316(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 36 4.2 CP001365_330(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 36 5.5 CP000552_310(CP000552|pid:none) Prochlorococcus marinus str. MIT... 36 5.5 CP000878_304(CP000878|pid:none) Prochlorococcus marinus str. MIT... 35 7.2 BX569689_237(BX569689|pid:none) Synechococcus sp. WH8102 complet... 35 7.2 CP000111_287(CP000111|pid:none) Prochlorococcus marinus str. MIT... 35 7.2 AL645854_7(AL645854|pid:none) Mouse DNA sequence from clone RP23... 35 7.2 AE017125_1358(AE017125|pid:none) Helicobacter hepaticus ATCC 514... 35 9.5 AM910983_104(AM910983|pid:none) Plasmodium knowlesi strain H chr... 35 9.5 CP000481_62(CP000481|pid:none) Acidothermus cellulolyticus 11B s... 35 9.5 AE017221_1463(AE017221|pid:none) Thermus thermophilus HB27, comp... 35 9.5 BC068814_1(BC068814|pid:none) Xenopus laevis hypothetical protei... 35 9.5
>AY139983_1(AY139983|pid:none) Arabidopsis thaliana putative protein (At4g12130) mRNA, complete cds. &BT008478_1(BT008478|pid:none) Length = 393
Score = 137 bits (344), Expect = 2e-30 Identities = 89/273 (32%), Positives = 130/273 (47%), Gaps = 24/273 (8%) Frame = +2
Query: 608 LKSRSLIKVVGPDALKHLQGLTTNNLNRLKDNQS--------------TNTSIYNGFLQG 745 LKSRS+++ GPD +K LQGL TN++ R ++ TN +Y L Sbjct: 35 LKSRSVVRFSGPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPMYAALLTP 94
Query: 746 NGRLLFDSIIALDREHHNGNPKPISMAPGSSDNSGLDSFIVDIDSSILEEAMAHLKQYKL 925 GR L+D + + S S G D+D +L+E + LK+Y+L Sbjct: 95 QGRFLYDFFLYSPSRPDEKLDRTGSGPGSDSGRDGSVELFADVDVDVLDELLETLKKYRL 154
Query: 926 RNKIDIIDVTENFNVYSILDKTYK----------TVRDDSLFAQLEKDQCSVMMDPRHQI 1075 R+K+DI +V E F+ + + R A K DPR + Sbjct: 155 RSKVDIENVAEEFSCWQRYGRNLTGSSSVGWGGGVDRAGESTASGNKYGWQWYKDPRLEC 214
Query: 1076 MGVRLLVPNNKQLVVEERLSKYESKDETIYNLFRLSQGIPQGVKEYQWGNIIPLEYNFDL 1255 +G R + P++ + E + DE+ Y L+RL G+ +G E G IPLEYNF Sbjct: 215 LGYRSIFPSDATPPLVEA---DKETDESNYLLWRLEHGVAEGSAEIPKGEAIPLEYNFVG 271
Query: 1256 LNGVDFHKGCYLGQELTSRTHFTGLIRKRIFPV 1354 LN + F KGCY+GQEL +RTH G+IRKR+ P+ Sbjct: 272 LNAISFDKGCYVGQELIARTHHRGVIRKRLIPL 304
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 2,151,407,081 Number of extensions: 38014876 Number of successful extensions: 108119 Number of sequences better than 10.0: 270 Number of HSP's gapped: 107984 Number of HSP's successfully gapped: 292 Length of query: 624 Length of database: 1,051,180,864 Length adjustment: 135 Effective length of query: 489 Effective length of database: 614,245,399 Effective search space: 300366000111 Effective search space used: 300366000111 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
6 |
SL (DIR, L) |
0 |
SS (DIR, S) |
3 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |