Contig-U12194-1
Contig ID Contig-U12194-1
Contig update 2002.12.18
Contig sequence
>Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d
AAACTAAAATAAATATAAAAAAAAAAATTTAGTNAAAAACATTTANAATA
ATTCCACCACCAAAAAAAAAAATTTTGCAATAAAAAAAATAAAAAAANAA
AAAAGCAAACATAAACAAATAAAAACCAAACTTTAAAATAATTTATTATT
TCCATAGAAAAAAAAAAAAATAAAAACCAAAATTAAAATTAATTATTAAA
TAATAATATTAATAATTTATAATATAATAATAATAATAATGATAAATCCA
AAATCTTATGGAAGAGAATCAAACCATTATTCAGTAGTAGAAGATATTAT
TGATAATAATAATAATAATAATAATAATAAGGCTAATGAAGAAGAGGATG
ATGATGAAGTTGAAAGAGAATTTTTGGCAAGCTTAACTAAAAAACAAAGA
AAACTCTTACTTAGACAAATTAAATTGGAAGAGAAACAAGCAAAGAAAAA
AAAGAAAAAAAGAGAGAAAAGAAAATATAGTGATAGCTCCGATTCTGATA
GTGATGGAGATAGAAAGAAAAGACATAAATCATCATCATCAA--------
--AATAATAATGATAAATTTAAAATCATTGGAAAAAATTAAAAAATGTGT
TGTACCATTAAAAAGTAGAAGTTTAATTAAAGTGGTTGGACCTGATGCAT
TAAAGCATTTACAAGGTTTAACAACAAATAATTTGAATAGATTAAAGGAT
AATCAATCAACAAATACATCAATTTATAATGGTTTCCTTCAAGGAAATGG
TAGACTATTATTTGATTCAATTATAGCACTTGATAGAGAACATCATAATG
GCAACCCAAAACCAATTTCAATGGCACCAGGTAGTTCAGACAACAGTGGA
TTAGATTCGTTCATTGTCGATATTGATAGTTCAATTTTGGAAGAAGCAAT
GGCCCATTTGAAACAATATAAACTTAGAAATAAAATTGATATCATTGATG
TCACTGAAAATTTTAATGTCTATTCAATCTTGGATAAAACTTATAAGACA
GTTAGAGATGACTCATTATTTGCTCAATTAGAGAAAGATCAATGTTCTGT
CATGATGGATCCAAGACATCAAATCATGGGTGTTAGATTATTAGTACCAA
ATAATAAACAATTAGTTGTTGAAGAAAGATTATCAAAATATGAAAGTAAA
GATGAAACAATTTATAATTTATTTAGACTAAGCCAAGGTATACCACAAGG
TGTTAAAGAATATCAATGGGGAAATATAATTCCATTGGAATATAATTTCG
ATCTTTTAAATGGTGTCGATTTTCATAAGGGATGTTATTTAGGCCAAGAA
TTAACCTCAAGAACACATTTCACAGGTTTAATTAGAAAGAGAATTTTCCC
AGTTGTAATGAGTGTTAAAGATGTTGAAAGTGCTAGTGTAATGGATGAAG
CAATCATCGACCCAACAAAACCACCAAAAGAATCATTACTCTTCCCAAAA
CGTATTCTAAATGCATTAAATCTTGAGCATCCACCATCAGACTCTGCATT
AATTGTTAAAAATATCTCACCAAAACATAATCAACAACAATCATCAGATG
AACCTGTTAAAGTTGGTACTGATAGTGAAATTAAAACAGTTTCAAGATCA
ACCGATAAATTCATTACCGGTATTCATGGTGTTGGTTTGGCAATGTTAAA
AGTTGAAAACATTGATATCTTCCAATTAGATAATACTGTTGTTCATGATA
AATCAAATAAAGAATTAACAGTTTTACCACCTTGTTGGATTAGTAAATTA
ACAAGTTTACAAAGACACCACAACAAGTTAGTTAAATTTTATAAAAAAAA
AAAAAAAAAAAAGAAAAAAAAAAAAAACAATAAAAACATATAAATTATAA
TTTTATTATTCAATAATAAAAAA

Gap gap included
Contig length 1863
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2820285
End point 2818688
Strand (PLUS/MINUS) MINUS
Number of clones 14
Number of EST 15
Link to clone list U12194
List of clone(s)

est1=SSA877F,1,246
est2=VSA354E,160,543
est3=VFG690E,544,1760
est4=SFH507Z,1000,1774
est5=AFI706Z,1024,1779
est6=AFJ381Z,1024,1727
est7=AFK813Z,1024,1721
est8=AFH607Z,1040,1771
est9=AFL347Z,1065,1771
est10=VFJ156Z,1094,1756
est11=CHF149Z,1112,1741
est12=SSI381Z,1144,1805
est13=AFO172Z,1148,1729
est14=SSA877Z,1278,1787
est15=SSE175Z,1332,1866
Translated Amino Acid sequence
n*nkykkknlvknixnnsttkkknfaikkikkxkskhkqiktkl*nnllfp*kkkkiktk
ikiny*IIILIIYNIIIIIMINPKSYGRESNHYSVVEDIIDNNNNNNNNKANEEEDDDEV
EREFLASLTKKQRKLLLRQIKLEEKQAKKKKKKREKRKYSDSSDSDSDGDRKKRHKSSSS
---

---IIMINLKSLEKIKKCVVPLKSRSLIKVVGPDALKHLQGLTTNNLNRLKDNQSTNTSI
YNGFLQGNGRLLFDSIIALDREHHNGNPKPISMAPGSSDNSGLDSFIVDIDSSILEEAMA
HLKQYKLRNKIDIIDVTENFNVYSILDKTYKTVRDDSLFAQLEKDQCSVMMDPRHQIMGV
RLLVPNNKQLVVEERLSKYESKDETIYNLFRLSQGIPQGVKEYQWGNIIPLEYNFDLLNG
VDFHKGCYLGQELTSRTHFTGLIRKRIFPVVMSVKDVESASVMDEAIIDPTKPPKESLLF
PKRILNALNLEHPPSDSALIVKNISPKHNQQQSSDEPVKVGTDSEIKTVSRSTDKFITGI
HGVGLAMLKVENIDIFQLDNTVVHDKSNKELTVLPPCWISKLTSLQRHHNKLVKFYKKKK
KKKKKKKNNKNI*iiillfnnkk


Translated Amino Acid sequence (All Frames)
Frame A:
klk*i*kkkfsxkhlx*fhhqkkkfcnkknkkxkkqt*tnknqtlk*fiisiekkknknq
n*n*llnnninnl*ynnnnndkskilwkrikplfssrryy**********g**rrg***s
*krifgkln*ktkktlt*tn*igretskekkekkrekki***lrf***wr*kekt*iiii
---

---nnndkfkiigkn*kmcctikk*kfn*sgwt*cikaftrfnnk*fe*ikg*sinkyin
l*wfpsrkw*tii*fnyst**rts*wqpktnfngtr*frqqwirfvhcry**fnfgrsng
pfeti*t*k*n*yh*ch*kf*clfnlg*nl*ds*r*liicsirersmfchdgsktsnhgc
*iistk**tisc*rkiiki*k*r*nnl*fi*tkpryttrc*rismgkynsigi*frsfkw
crfs*gmlfrprinlkntfhrfn*kenfpscnec*rc*kc*cng*snhrpnkttkriitl
pktyskciks*astirlcinc*kyltkt*sttiir*tc*swy***n*nsfkinr*ihyry
swcwfgnvks*kh*ylpir*yccs**ik*rinsfttlld**inkftktpqqvs*il*kkk
kkkekkkkq*khinynfiiq**k

Frame B:
n*nkykkknlvknixnnsttkkknfaikkikkxkskhkqiktkl*nnllfp*kkkkiktk
ikiny*IIILIIYNIIIIIMINPKSYGRESNHYSVVEDIIDNNNNNNNNKANEEEDDDEV
EREFLASLTKKQRKLLLRQIKLEEKQAKKKKKKREKRKYSDSSDSDSDGDRKKRHKSSSS
---

---IIMINLKSLEKIKKCVVPLKSRSLIKVVGPDALKHLQGLTTNNLNRLKDNQSTNTSI
YNGFLQGNGRLLFDSIIALDREHHNGNPKPISMAPGSSDNSGLDSFIVDIDSSILEEAMA
HLKQYKLRNKIDIIDVTENFNVYSILDKTYKTVRDDSLFAQLEKDQCSVMMDPRHQIMGV
RLLVPNNKQLVVEERLSKYESKDETIYNLFRLSQGIPQGVKEYQWGNIIPLEYNFDLLNG
VDFHKGCYLGQELTSRTHFTGLIRKRIFPVVMSVKDVESASVMDEAIIDPTKPPKESLLF
PKRILNALNLEHPPSDSALIVKNISPKHNQQQSSDEPVKVGTDSEIKTVSRSTDKFITGI
HGVGLAMLKVENIDIFQLDNTVVHDKSNKELTVLPPCWISKLTSLQRHHNKLVKFYKKKK
KKKKKKKNNKNI*iiillfnnkk

Frame C:
tkinikkki*xktfxiipppkkkilq*kk*kxkkanink*kpnfkiiyyfhrkkkk*kpk
lkliik**y**fii*******iqnlmeenqtiiq**killiiiiiiiiirlmkkrmmmkl
kenfwqa*lknkensyldklnwkrnkqrkkrkkerkeniviapilivmeierkdinhhhq
---

---****i*nhwkklknvlyh*kvev*lkwldlmh*siykv*qqii*id*riinqqihqf
imvsfkemvdyyliql*hlieniimatqnqfqwhqvvqttvd*irslsilivqfwkkqwp
i*nninleiklislmslkilmsiqswiklirqlemthylln*rkinvls*wiqdikswvl
dy*yqiinn*llkkdyqnmkvkmkqfiiyld*akvyhkvlkningei*fhwniisif*mv
sifirdvi*akn*pqehisqv*lerefsql**vlkmlkvlv*wmkqsstqqnhqknhyss
qnvf*mh*ilsihhqtlh*llkishqniinnnhqmnllklvlivklkqfqdqpinslpvf
mvlvwqc*klktlissn*iillfminqikn*qfyhlvglvn*qvykdttts*lnfikkkk
kkrkkkktiktykl*fyysiik

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12194-1 (Contig-U12194-1Q)
/CSM_Contig/Contig-U12194-1Q.Seq.d
(1873 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Conti... 2373 0.0
Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U04171-1 (Contig-U04171-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13951-1 (Contig-U13951-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U11837-1 (Contig-U11837-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti... 40 0.009

>Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d
Length = 1873

Score = 2373 bits (1197), Expect = 0.0
Identities = 1197/1197 (100%)
Strand = Plus / Plus


Query: 596 tgtgttgtaccattaaaaagtagaagtttaattaaagtggttggacctgatgcattaaag 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgtgttgtaccattaaaaagtagaagtttaattaaagtggttggacctgatgcattaaag 655


Query: 656 catttacaaggtttaacaacaaataatttgaatagattaaaggataatcaatcaacaaat 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 catttacaaggtttaacaacaaataatttgaatagattaaaggataatcaatcaacaaat 715


Query: 716 acatcaatttataatggtttccttcaaggaaatggtagactattatttgattcaattata 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 acatcaatttataatggtttccttcaaggaaatggtagactattatttgattcaattata 775


Query: 776 gcacttgatagagaacatcataatggcaacccaaaaccaatttcaatggcaccaggtagt 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gcacttgatagagaacatcataatggcaacccaaaaccaatttcaatggcaccaggtagt 835


Query: 836 tcagacaacagtggattagattcgttcattgtcgatattgatagttcaattttggaagaa 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tcagacaacagtggattagattcgttcattgtcgatattgatagttcaattttggaagaa 895


Query: 896 gcaatggcccatttgaaacaatataaacttagaaataaaattgatatcattgatgtcact 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gcaatggcccatttgaaacaatataaacttagaaataaaattgatatcattgatgtcact 955


Query: 956 gaaaattttaatgtctattcaatcttggataaaacttataagacagttagagatgactca 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gaaaattttaatgtctattcaatcttggataaaacttataagacagttagagatgactca 1015


Query: 1016 ttatttgctcaattagagaaagatcaatgttctgtcatgatggatccaagacatcaaatc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ttatttgctcaattagagaaagatcaatgttctgtcatgatggatccaagacatcaaatc 1075


Query: 1076 atgggtgttagattattagtaccaaataataaacaattagttgttgaagaaagattatca 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 atgggtgttagattattagtaccaaataataaacaattagttgttgaagaaagattatca 1135


Query: 1136 aaatatgaaagtaaagatgaaacaatttataatttatttagactaagccaaggtatacca 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 aaatatgaaagtaaagatgaaacaatttataatttatttagactaagccaaggtatacca 1195


Query: 1196 caaggtgttaaagaatatcaatggggaaatataattccattggaatataatttcgatctt 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 caaggtgttaaagaatatcaatggggaaatataattccattggaatataatttcgatctt 1255


Query: 1256 ttaaatggtgtcgattttcataagggatgttatttaggccaagaattaacctcaagaaca 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 ttaaatggtgtcgattttcataagggatgttatttaggccaagaattaacctcaagaaca 1315


Query: 1316 catttcacaggtttaattagaaagagaattttcccagttgtaatgagtgttaaagatgtt 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 catttcacaggtttaattagaaagagaattttcccagttgtaatgagtgttaaagatgtt 1375


Query: 1376 gaaagtgctagtgtaatggatgaagcaatcatcgacccaacaaaaccaccaaaagaatca 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 gaaagtgctagtgtaatggatgaagcaatcatcgacccaacaaaaccaccaaaagaatca 1435


Query: 1436 ttactcttcccaaaacgtattctaaatgcattaaatcttgagcatccaccatcagactct 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 ttactcttcccaaaacgtattctaaatgcattaaatcttgagcatccaccatcagactct 1495


Query: 1496 gcattaattgttaaaaatatctcaccaaaacataatcaacaacaatcatcagatgaacct 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 gcattaattgttaaaaatatctcaccaaaacataatcaacaacaatcatcagatgaacct 1555


Query: 1556 gttaaagttggtactgatagtgaaattaaaacagtttcaagatcaaccgataaattcatt 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 gttaaagttggtactgatagtgaaattaaaacagtttcaagatcaaccgataaattcatt 1615


Query: 1616 accggtattcatggtgttggtttggcaatgttaaaagttgaaaacattgatatcttccaa 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 accggtattcatggtgttggtttggcaatgttaaaagttgaaaacattgatatcttccaa 1675


Query: 1676 ttagataatactgttgttcatgataaatcaaataaagaattaacagttttaccaccttgt 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 ttagataatactgttgttcatgataaatcaaataaagaattaacagttttaccaccttgt 1735


Query: 1736 tggattagtaaattaacaagtttacaaagacaccacaacaagttagttaaattttat 1792
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 tggattagtaaattaacaagtttacaaagacaccacaacaagttagttaaattttat 1792


Score = 220 bits (111), Expect = 4e-57
Identities = 111/111 (100%)
Strand = Plus / Plus


Query: 331 ggctaatgaagaagaggatgatgatgaagttgaaagagaatttttggcaagcttaactaa 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggctaatgaagaagaggatgatgatgaagttgaaagagaatttttggcaagcttaactaa 390


Query: 391 aaaacaaagaaaactcttacttagacaaattaaattggaagagaaacaagc 441
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaaacaaagaaaactcttacttagacaaattaaattggaagagaaacaagc 441


Score = 151 bits (76), Expect = 3e-36
Identities = 106/106 (100%)
Strand = Plus / Plus


Query: 476 tatagtgatagctccgattctgatagtgatggagatagaaagaaaagacataaatcatca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tatagtgatagctccgattctgatagtgatggagatagaaagaaaagacataaatcatca 535


Query: 536 tcatcaannnnnnnnnnaataataatgataaatttaaaatcattgg 581
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tcatcaannnnnnnnnnaataataatgataaatttaaaatcattgg 581


Score = 109 bits (55), Expect = 1e-23
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 248 ccaaaatcttatggaagagaatcaaaccattattcagtagtagaagatattattg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccaaaatcttatggaagagaatcaaaccattattcagtagtagaagatattattg 302


Score = 91.7 bits (46), Expect = 3e-18
Identities = 46/46 (100%)
Strand = Plus / Plus


Query: 1828 caataaaaacatataaattataattttattattcaataataaaaaa 1873
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1828 caataaaaacatataaattataattttattattcaataataaaaaa 1873


Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 28 tttagtnaaaaacatttanaataattccaccacc 61
||||||||||||||||||||||||||||||||||
Sbjct: 28 tttagtnaaaaacatttanaataattccaccacc 61


Score = 38.2 bits (19), Expect = 0.034
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 139 taatttattatttccatag 157
|||||||||||||||||||
Sbjct: 139 taatttattatttccatag 157


Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 553 aataataatgataaat 568
||||||||||||||||
Sbjct: 232 aataataatgataaat 247


>Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Contig-U14899-1Q.Seq.d
Length = 983

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 337 tgaagaagaggatgatgatgaag 359
|||||||||||||||||||||||
Sbjct: 196 tgaagaagaggatgatgatgaag 218


>Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Contig-U11391-1Q.Seq.d
Length = 2461

Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus


Query: 333 ctaatgaagaagaggatgatgatgaag 359
||||||||||||| |||||||||||||
Sbjct: 1919 ctaatgaagaagatgatgatgatgaag 1893


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,410
Number of Sequences: 6905
Number of extensions: 33410
Number of successful extensions: 4823
Number of sequences better than 10.0: 461
length of query: 1873
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1857
effective length of database: 5,564,391
effective search space: 10333074087
effective search space used: 10333074087
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d
(1873 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ402294) Dictyostelium discoideum cDNA clone:dds16m01, 3' ... 1497 0.0 2
(BJ344328) Dictyostelium discoideum cDNA clone:dda18l01, 3' ... 1473 0.0 1
(BJ431600) Dictyostelium discoideum cDNA clone:ddv14c24, 3' ... 1465 0.0 1
(BJ343132) Dictyostelium discoideum cDNA clone:dda22j04, 3' ... 1364 0.0 1
(BJ343463) Dictyostelium discoideum cDNA clone:dda16m02, 3' ... 1346 0.0 2
(BJ345353) Dictyostelium discoideum cDNA clone:dda23n11, 3' ... 1292 0.0 2
(BJ432754) Dictyostelium discoideum cDNA clone:ddv19o13, 3' ... 1291 0.0 1
(C90211) Dictyostelium discoideum slug cDNA, clone SSI381. 1211 0.0 2
(BJ344561) Dictyostelium discoideum cDNA clone:dda19b21, 3' ... 1183 0.0 4
(BJ345982) Dictyostelium discoideum cDNA clone:dda29o17, 3' ... 1136 0.0 1
(BJ413241) Dictyostelium discoideum cDNA clone:ddv14c24, 5' ... 1124 0.0 2
(BJ378675) Dictyostelium discoideum cDNA clone:ddc32a13, 3' ... 1118 0.0 2
(C25652) Dictyostelium discoideum slug cDNA, clone SSA877. 946 0.0 2
(AU037688) Dictyostelium discoideum slug cDNA, clone SSE175. 825 0.0 2
(AU261445) Dictyostelium discoideum vegetative cDNA clone:VS... 133 1e-78 3
(AU072788) Dictyostelium discoideum slug cDNA, clone SSA877. 56 4e-07 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.002 18
(BH147579) ENTQK25TR Entamoeba histolytica Sheared DNA Entam... 40 0.026 4
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 40 0.036 9
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 44 0.065 10
(AL844509) Plasmodium falciparum chromosome 13. 52 0.078 1
(CA854593) PfESToac33d05.y1 Plasmodium falciparum 3D7 gameto... 52 0.078 1
(FC144214) 1106908559436 BABEVPN-C-01-1-7KB Papio anubis cDN... 50 0.31 1
(AJ969074) Spiroplasma citri plasmid pSci6. 36 0.37 6
(AQ254531) CpG0681B CpIOWAgDNA1 Cryptosporidium parvum genom... 46 0.50 2
(EH076766) PMDBF87TR Perkinsus marinus small insert cDNA lib... 48 0.54 2
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 34 0.54 12
(AC177373) Strongylocentrotus purpuratus clone R3-1031P07, W... 38 0.68 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.77 13
(ET910988) CHO_OF459xo18f2.ab1 CHO_OF Nicotiana tabacum geno... 38 1.1 3
(EJ235544) 1092405900250 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.2 2
(CU459162) Zebrafish DNA sequence from clone CH73-50D8 in li... 48 1.2 1
(AX488742) Sequence 6042 from Patent WO02053728. 48 1.2 1
(BX538353) Cryptosporidium parvum chromosome 6, complete seq... 48 1.2 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 48 1.2 1
(AY686477) Mus musculus strain 129S6/SvEvTac chromosome 6 cl... 48 1.2 1
(AY686476) Mus musculus strain 129S6/SvEvTac chromosome 6 cl... 48 1.2 1
(EV027981) BNSCS2CT_UP_166_H08_27APR2007_050 Brassica napus ... 48 1.2 1
(EV025654) BNSCS2CT_UP_136_D11_21APR2007_089 Brassica napus ... 48 1.2 1
(ES610393) m28d05 American mink brain Neovison vison cDNA cl... 48 1.2 1
(EE474227) BNYS2DCT_UP_010_H06_28FEB2005_034 Brassica napus ... 48 1.2 1
(CO453852) MZCCL10199A10.g Maize Endosperm cDNA Library Zea ... 48 1.2 1
(CO449713) MZCCL10140C09.g Maize Endosperm cDNA Library Zea ... 48 1.2 1
(CD813632) BN15.020G07F020211 BN15 Brassica napus cDNA clone... 48 1.2 1
(CD078359) MA3-9999U-L237-E03-U.G MA3-0001 Schistosoma manso... 48 1.2 1
(CD078275) MA3-9999U-L236-E03-U.G MA3-0001 Schistosoma manso... 48 1.2 1
(BG008645) PM4-GN0304-291100-003-h11 GN0304 Homo sapiens cDN... 48 1.2 1
(FL641447) TS04-F9 Reticulitermes flavipes symbiont library ... 48 1.2 1
(FF562517) MUSRQ60TF MUSR Musa acuminata cDNA 5', mRNA seque... 48 1.2 1
(FF561475) MUSRL15TF MUSR Musa acuminata cDNA 5', mRNA seque... 48 1.2 1
(FF147889) Sm27A9 Cell cultures of Saussurea medusa Saussure... 48 1.2 1
(FD714445) CAAA1832.fwd CAAA Petromyzon marinus Petromyzon m... 48 1.2 1
(AC226830) Medicago truncatula chromosome 7 clone mth2-51d18... 40 1.6 6
(AC215400) Solanum lycopersicum chromosome 2 clone C02HBa015... 40 2.1 5
(DY888516) CeleSEQ5588 Cunninghamella elegans pBluescript (E... 40 2.2 3
(AF494214) Medicago truncatula calmodulin-like protein 3 mRN... 36 2.2 2
(DY886485) CeleSEQ2157 Cunninghamella elegans pBluescript (E... 40 2.3 3
(AP010198) Lotus japonicus genomic DNA, chromosome 3, clone:... 40 2.8 4
(AB073976) Pichia anomala gene for Na+/H+ exchanger HaNHA1, ... 36 3.0 2
(CT030626) Xenopus tropicalis finished cDNA, clone TNeu139b17. 46 4.8 1
(BX324205) Zebrafish DNA sequence from clone CH211-10K1 in l... 46 4.8 1
(BX324116) Zebrafish DNA sequence from clone CH211-114G7 in ... 46 4.8 1
(BC135122) Xenopus tropicalis hypothetical protein LOC447970... 46 4.8 1
(BC092362) Danio rerio zgc:113229, mRNA (cDNA clone MGC:1132... 46 4.8 1
(BV300519) S239P697FF6.T0 ChinaGrayWolf Canis lupus STS geno... 46 4.8 1
(AC186392) Pan troglodytes BAC clone CH251-425I12 from chrom... 46 4.8 1
(AB174685) Macaca fascicularis brain cDNA clone: QtrA-18687,... 46 4.8 1
(AY842945) Metarhizium anisopliae clone Ma307 microsatellite... 46 4.8 1
(AM447227) Vitis vinifera contig VV78X262419.4, whole genome... 46 4.8 1
(EA327721) Sequence 17 from patent US 7306910. 46 4.8 1
(EA117655) Sequence 1839 from patent US 7205146. 46 4.8 1
(EA117654) Sequence 1838 from patent US 7205146. 46 4.8 1
(EA117653) Sequence 1837 from patent US 7205146. 46 4.8 1
(DI001559) Breast Cancer Prognostics. 46 4.8 1
(DD090877) Breast Cancer Prognostics. 46 4.8 1
(CS741860) Sequence 9856 from Patent WO2005083127. 46 4.8 1
(CS350966) Sequence 350 from Patent WO2006013561. 46 4.8 1
(CQ895735) Sequence 17 from Patent EP1471154. 46 4.8 1
(CQ714159) Sequence 93 from Patent WO02068579. 46 4.8 1
(BD186258) STAT6 activating gene. 46 4.8 1
(AX540415) Sequence 27 from Patent WO02055738. 46 4.8 1
(AR447770) Sequence 374 from patent US 6673549. 46 4.8 1
(AR243553) Sequence 3 from patent US 6475797. 46 4.8 1
(AC147708) Canis Familiaris, clone XX-25G10, complete sequence. 46 4.8 1
(U12964) Caenorhabditis elegans cosmid F26F4, complete seque... 46 4.8 1
(X99717) H.sapiens mRNA for SRcyp protein. 46 4.8 1
(U69668) Human nuclear pore complex-associated protein TPR (... 46 4.8 1
(U40763) Human Clk-associated RS cyclophilin CARS-Cyp mRNA, ... 46 4.8 1
(BC111693) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1
(BC109373) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1
(BC073875) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1
(BC063711) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1
(BC001555) Homo sapiens peptidylprolyl isomerase G (cyclophi... 46 4.8 1
(AL133553) Human DNA sequence from clone GS1-174L6 on chromo... 46 4.8 1
(AC226889) Homo sapiens FOSMID clone ABC14-1080022I15 from c... 46 4.8 1
(AC107389) Homo sapiens BAC clone RP11-509N15 from 4, comple... 46 4.8 1
(AC027058) Homo sapiens chromosome 4, clone RP11-481K13, com... 46 4.8 1
(AC016772) Homo sapiens BAC clone RP11-567N19 from 2, comple... 46 4.8 1
(AC012450) Homo sapiens BAC clone RP11-351J7 from 2, complet... 46 4.8 1
(AC119499) Rattus norvegicus clone CH230-311G15, *** SEQUENC... 46 4.8 1

>(BJ402294) Dictyostelium discoideum cDNA clone:dds16m01, 3' end,
single read.
Length = 775

Score = 1497 bits (755), Expect(2) = 0.0
Identities = 755/755 (100%)
Strand = Plus / Minus


Query: 1009 tgactcattatttgctcaattagagaaagatcaatgttctgtcatgatggatccaagaca 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tgactcattatttgctcaattagagaaagatcaatgttctgtcatgatggatccaagaca 716


Query: 1069 tcaaatcatgggtgttagattattagtaccaaataataaacaattagttgttgaagaaag 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tcaaatcatgggtgttagattattagtaccaaataataaacaattagttgttgaagaaag 656


Query: 1129 attatcaaaatatgaaagtaaagatgaaacaatttataatttatttagactaagccaagg 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 attatcaaaatatgaaagtaaagatgaaacaatttataatttatttagactaagccaagg 596


Query: 1189 tataccacaaggtgttaaagaatatcaatggggaaatataattccattggaatataattt 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tataccacaaggtgttaaagaatatcaatggggaaatataattccattggaatataattt 536


Query: 1249 cgatcttttaaatggtgtcgattttcataagggatgttatttaggccaagaattaacctc 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cgatcttttaaatggtgtcgattttcataagggatgttatttaggccaagaattaacctc 476


Query: 1309 aagaacacatttcacaggtttaattagaaagagaattttcccagttgtaatgagtgttaa 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aagaacacatttcacaggtttaattagaaagagaattttcccagttgtaatgagtgttaa 416


Query: 1369 agatgttgaaagtgctagtgtaatggatgaagcaatcatcgacccaacaaaaccaccaaa 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agatgttgaaagtgctagtgtaatggatgaagcaatcatcgacccaacaaaaccaccaaa 356


Query: 1429 agaatcattactcttcccaaaacgtattctaaatgcattaaatcttgagcatccaccatc 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agaatcattactcttcccaaaacgtattctaaatgcattaaatcttgagcatccaccatc 296


Query: 1489 agactctgcattaattgttaaaaatatctcaccaaaacataatcaacaacaatcatcaga 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agactctgcattaattgttaaaaatatctcaccaaaacataatcaacaacaatcatcaga 236


Query: 1549 tgaacctgttaaagttggtactgatagtgaaattaaaacagtttcaagatcaaccgataa 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgaacctgttaaagttggtactgatagtgaaattaaaacagtttcaagatcaaccgataa 176


Query: 1609 attcattaccggtattcatggtgttggtttggcaatgttaaaagttgaaaacattgatat 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 attcattaccggtattcatggtgttggtttggcaatgttaaaagttgaaaacattgatat 116


Query: 1669 cttccaattagataatactgttgttcatgataaatcaaataaagaattaacagttttacc 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cttccaattagataatactgttgttcatgataaatcaaataaagaattaacagttttacc 56


Query: 1729 accttgttggattagtaaattaacaagtttacaaa 1763
|||||||||||||||||||||||||||||||||||
Sbjct: 55 accttgttggattagtaaattaacaagtttacaaa 21

Score = 38.2 bits (19), Expect(2) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1764 gacaccacaacaagttagt 1782
|||||||||||||||||||
Sbjct: 19 gacaccacaacaagttagt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,870,843,552
Number of extensions: 117583860
Number of successful extensions: 10386528
Number of sequences better than 10.0: 288
Length of query: 1873
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1849
Effective length of database: 97,308,875,965
Effective search space: 179924111659285
Effective search space used: 179924111659285
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12194-1 (Contig-U12194-1Q) /CSM_Contig/Contig-U12194-1Q.Seq.d
(1873 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY139983_1(AY139983|pid:none) Arabidopsis thaliana putative prot... 137 2e-30
(Q7RYZ1) RecName: Full=Putative transferase caf-17, mitochondria... 133 3e-29
(A2R472) RecName: Full=Putative transferase caf17, mitochondrial... 133 3e-29
(Q4WVK5) RecName: Full=Putative transferase caf17, mitochondrial... 126 3e-27
AL049638_20(AL049638|pid:none) Arabidopsis thaliana DNA chromoso... 125 7e-27
(A1DDV0) RecName: Full=Putative transferase caf17, mitochondrial... 122 5e-26
CU633991_1(CU633991|pid:none) Zebrafish DNA sequence from clone ... 121 1e-25
CU633900_909(CU633900|pid:none) Podospora anserina genomic DNA c... 120 2e-25
(Q5T440) RecName: Full=Putative transferase C1orf69, mitochondri... 117 1e-24
(Q0UE25) RecName: Full=Putative transferase CAF17, mitochondrial... 116 2e-24
CP000774_748(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 116 2e-24
(Q6C8Y7) RecName: Full=Putative transferase CAF17, mitochondrial... 114 1e-23
EF107103_28(EF107103|pid:none) Uncultured marine bacterium HF10_... 112 6e-23
EU954436_1(EU954436|pid:none) Zea mays clone 1467019 aminomethyl... 109 3e-22
BA000040_2554(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 108 5e-22
CP000613_1618(CP000613|pid:none) Rhodospirillum centenum SW, com... 107 1e-21
DQ088851_2(DQ088851|pid:none) Uncultured bacterium eBACmed86H08 ... 106 3e-21
CP000084_617(CP000084|pid:none) Candidatus Pelagibacter ubique H... 106 3e-21
FN317596_1(FN317596|pid:none) Schistosoma japonicum isolate Anhu... 105 7e-21
CP000409_486(CP000409|pid:none) Rickettsia canadensis str. McKie... 105 7e-21
BC153524_1(BC153524|pid:none) Danio rerio zgc:153540, mRNA (cDNA... 103 2e-20
CT005263_173(CT005263|pid:none) Leishmania major strain Friedlin... 103 3e-20
BC124381_1(BC124381|pid:none) Danio rerio zgc:153540, mRNA (cDNA... 101 8e-20
CU234118_1931(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 101 8e-20
AE017197_437(AE017197|pid:none) Rickettsia typhi str. Wilmington... 101 1e-19
AX882299_1(AX882299|pid:none) Sequence 17204 from Patent EP10746... 100 1e-19
CP001096_1233(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 100 2e-19
CP000319_3786(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 100 2e-19
BX572596_120(BX572596|pid:none) Rhodopseudomonas palustris CGA00... 100 2e-19
(Q5KP91) RecName: Full=Putative transferase CAF17, mitochondrial... 99 7e-19
CR925677_82(CR925677|pid:none) Ehrlichia ruminantium str. Gardel... 98 9e-19
AM502228_13(AM502228|pid:none) Leishmania infantum chromosome 10. 97 2e-18
CR767821_96(CR767821|pid:none) Ehrlichia ruminantium strain Welg... 97 3e-18
AM999887_25(AM999887|pid:none) Wolbachia endosymbiont of Culex q... 97 3e-18
AJ235271_232(AJ235271|pid:none) Rickettsia prowazekii strain Mad... 95 1e-17
CP000230_2932(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 94 1e-17
CP000301_4275(CP000301|pid:none) Rhodopseudomonas palustris BisB... 94 2e-17
CP000847_759(CP000847|pid:none) Rickettsia akari str. Hartford, ... 93 4e-17
CP001280_1084(CP001280|pid:none) Methylocella silvestris BL2, co... 92 7e-17
FN357710_8(FN357710|pid:none) Schistosoma mansoni genome sequenc... 92 7e-17
CP001016_703(CP001016|pid:none) Beijerinckia indica subsp. indic... 90 2e-16
CP001340_389(CP001340|pid:none) Caulobacter crescentus NA1000, c... 89 4e-16
(Q6BPW7) RecName: Full=Putative transferase CAF17, mitochondrial... 88 1e-15
CP001391_375(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 88 1e-15
CP000471_3691(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 88 1e-15
AM889285_3266(AM889285|pid:none) Gluconacetobacter diazotrophicu... 87 2e-15
CP000463_4353(CP000463|pid:none) Rhodopseudomonas palustris BisA... 87 2e-15
AC159703_1(AC159703|pid:none) Trypanosoma brucei chromosome 8 cl... 87 2e-15
CP001325_289(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 87 2e-15
CP000927_4342(CP000927|pid:none) Caulobacter sp. K31, complete g... 86 5e-15
CP000697_261(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 86 5e-15
FN392320_1204(FN392320|pid:none) Pichia pastoris GS115 chromosom... 86 6e-15
Z81080_6(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 84 1e-14
CP000107_89(CP000107|pid:none) Ehrlichia canis str. Jake, comple... 84 1e-14
AM494475_1793(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 84 2e-14
BX897699_506(BX897699|pid:none) Bartonella henselae strain Houst... 84 2e-14
CP000908_4244(CP000908|pid:none) Methylobacterium extorquens PA1... 83 4e-14
CP000009_1959(CP000009|pid:none) Gluconobacter oxydans 621H, com... 82 5e-14
CP001612_606(CP001612|pid:none) Rickettsia africae ESF-5, comple... 82 5e-14
AE006914_698(AE006914|pid:none) Rickettsia conorii str. Malish 7... 82 9e-14
AP009384_401(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 82 9e-14
CP001227_654(CP001227|pid:none) Rickettsia peacockii str. Rustic... 82 9e-14
CP001562_526(CP001562|pid:none) Bartonella grahamii as4aup, comp... 81 2e-13
CP001510_4356(CP001510|pid:none) Methylobacterium extorquens AM1... 80 3e-13
CP001079_807(CP001079|pid:none) Anaplasma marginale str. Florida... 79 4e-13
CP000848_771(CP000848|pid:none) Rickettsia rickettsii str. 'Shei... 79 4e-13
BX897700_425(BX897700|pid:none) Bartonella quintana str. Toulous... 79 6e-13
CP000236_131(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan... 78 1e-12
CP000394_1986(CP000394|pid:none) Granulibacter bethesdensis CGDN... 78 1e-12
(Q75D53) RecName: Full=Putative transferase CAF17, mitochondrial... 77 2e-12
CP000284_1900(CP000284|pid:none) Methylobacillus flagellatus KT,... 77 3e-12
(A5DXC3) RecName: Full=Putative transferase CAF17, mitochondrial... 77 3e-12
CP001029_4721(CP001029|pid:none) Methylobacterium populi BJ001, ... 77 3e-12
BA000012_6137(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 76 4e-12
CP000655_962(CP000655|pid:none) Polynucleobacter necessarius sub... 76 4e-12
CP000030_811(CP000030|pid:none) Anaplasma marginale str. St. Mar... 76 4e-12
CP001349_671(CP001349|pid:none) Methylobacterium nodulans ORS 20... 76 5e-12
(A5DQ50) RecName: Full=Putative transferase CAF17, mitochondrial... 75 8e-12
CR954220_38(CR954220|pid:none) Ostreococcus tauri strain OTTH059... 75 1e-11
CP000377_1984(CP000377|pid:none) Silicibacter sp. TM1040, comple... 75 1e-11
CP000158_854(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 74 1e-11
CP000157_567(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 74 1e-11
(P47158) RecName: Full=Putative transferase CAF17, mitochondrial... 73 3e-11
CU928176_66(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 73 4e-11
CP000356_1414(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 72 7e-11
AP009153_596(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 71 2e-10
CP000282_2251(CP000282|pid:none) Saccharophagus degradans 2-40, ... 70 3e-10
CP000076_1420(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 70 3e-10
CP000450_1241(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 69 5e-10
CP001488_642(CP001488|pid:none) Brucella melitensis ATCC 23457 c... 69 8e-10
CP000887_612(CP000887|pid:none) Brucella abortus S19 chromosome ... 68 1e-09
AE014291_642(AE014291|pid:none) Brucella suis 1330 chromosome I,... 68 1e-09
CP001074_1452(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 67 2e-09
AL954747_1515(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 67 2e-09
CP001191_1004(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 66 4e-09
CP000943_1656(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 65 7e-09
CP000127_2373(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 65 9e-09
CP000438_4371(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 65 1e-08
CP000133_1385(CP000133|pid:none) Rhizobium etli CFN 42, complete... 64 1e-08
AE008692_1688(AE008692|pid:none) Zymomonas mobilis subsp. mobili... 64 2e-08
CP000744_4707(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 63 4e-08
FM209186_4584(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 63 4e-08
CP001139_2124(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 62 7e-08
CP000628_1206(CP000628|pid:none) Agrobacterium radiobacter K84 c... 62 9e-08
CP001321_1566(CP001321|pid:none) Haemophilus parasuis SH0165, co... 62 9e-08
CP001281_2340(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 61 1e-07
AM181176_1419(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 60 2e-07
CP001150_1572(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 60 2e-07
CP001157_1316(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 60 2e-07
(Q6CRA2) RecName: Full=Putative transferase CAF17, mitochondrial... 60 3e-07
AM260479_1547(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 60 4e-07
CP000949_1062(CP000949|pid:none) Pseudomonas putida W619, comple... 59 5e-07
CP000577_1874(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 59 6e-07
CP000089_2179(CP000089|pid:none) Dechloromonas aromatica RCB, co... 59 8e-07
CP000116_2098(CP000116|pid:none) Thiobacillus denitrificans ATCC... 59 8e-07
AD2706(AD2706) hypothetical protein gcvT [imported] - Agrobacter... 58 1e-06
CU633749_1451(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 57 2e-06
CP000947_318(CP000947|pid:none) Haemophilus somnus 2336, complet... 57 2e-06
AY232221_1(AY232221|pid:none) Drosophila yakuba clone yak-ad_CG8... 57 2e-06
CR954246_691(CR954246|pid:none) Pseudoalteromonas haloplanktis s... 57 2e-06
CP000934_2156(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 57 2e-06
CP000436_1302(CP000436|pid:none) Haemophilus somnus 129PT, compl... 57 2e-06
CP000830_2080(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 57 2e-06
(B6EKN9) RecName: Full=tRNA-modifying protein ygfZ; &FM178379_2... 57 2e-06
CP000094_1356(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 56 4e-06
CP001389_843(CP001389|pid:none) Rhizobium sp. NGR234, complete g... 56 4e-06
CP000352_1823(CP000352|pid:none) Ralstonia metallidurans CH34, c... 56 5e-06
CP000103_1725(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 55 7e-06
AE002098_986(AE002098|pid:none) Neisseria meningitidis MC58, com... 55 1e-05
CP000661_1999(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 55 1e-05
BA000037_2842(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 54 2e-05
CT573326_3990(CT573326|pid:none) Pseudomonas entomophila str. L4... 53 3e-05
CP000644_3247(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 53 4e-05
(Q8DC85) RecName: Full=tRNA-modifying protein ygfZ; &AE016795_1... 52 6e-05
CP000381_1118(CP000381|pid:none) Neisseria meningitidis 053442, ... 52 7e-05
(Q7MHM7) RecName: Full=tRNA-modifying protein ygfZ; 52 7e-05
(A8GIQ4) RecName: Full=tRNA-modifying protein ygfZ; &CP000826_3... 52 1e-04
AM421808_1108(AM421808|pid:none) Neisseria meningitidis serogrou... 52 1e-04
CU695238_417(CU695238|pid:none) Ralstonia solanacearum strain Mo... 52 1e-04
(Q57K67) RecName: Full=tRNA-modifying protein ygfZ; &AE017220_2... 51 1e-04
CP000388_3133(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 51 1e-04
AE004439_1874(AE004439|pid:none) Pasteurella multocida subsp. mu... 51 1e-04
(Q89AC3) RecName: Full=tRNA-modifying protein ygfZ; &AE016826_3... 51 2e-04
(Q1LTU6) RecName: Full=tRNA-modifying protein ygfZ; &CP000238_1... 51 2e-04
CP000544_47(CP000544|pid:none) Halorhodospira halophila SL1, com... 51 2e-04
CP001013_1867(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 50 2e-04
CP000539_1649(CP000539|pid:none) Acidovorax sp. JS42, complete g... 50 2e-04
CP001392_1956(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 50 2e-04
EU896023_1(EU896023|pid:none) Escherichia coli strain TB182A hyp... 50 3e-04
CP001635_2817(CP001635|pid:none) Variovorax paradoxus S110 chrom... 50 3e-04
CP000302_2937(CP000302|pid:none) Shewanella denitrificans OS217,... 50 4e-04
CP000155_1707(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 50 4e-04
(Q9KPA1) RecName: Full=tRNA-modifying protein ygfZ; &AE003852_2... 49 5e-04
CP001052_1892(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 49 6e-04
AE017340_816(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 49 6e-04
CP000285_1817(CP000285|pid:none) Chromohalobacter salexigens DSM... 49 6e-04
AE014187_495(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 49 6e-04
CP000769_2760(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 49 8e-04
(A7FF28) RecName: Full=tRNA-modifying protein ygfZ; &(Q666S2) R... 48 0.001
CP001025_1786(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 48 0.001
CR555306_3074(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 48 0.001
CR940347_698(CR940347|pid:none) Theileria annulata strain Ankara... 48 0.001
CP000884_3377(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 48 0.001
(Q6D961) RecName: Full=tRNA-modifying protein ygfZ; &BX950851_7... 48 0.001
CP000086_2113(CP000086|pid:none) Burkholderia thailandensis E264... 47 0.002
CP001291_1945(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 47 0.002
CP000572_2300(CP000572|pid:none) Burkholderia pseudomallei 1106a... 47 0.002
(Q87LM8) RecName: Full=tRNA-modifying protein ygfZ; &BA000031_2... 47 0.002
CP001408_2364(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 47 0.002
CP000680_1453(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 47 0.002
CP000010_1221(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 47 0.002
CP000440_1824(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 47 0.002
CP000961_3847(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 47 0.002
BX294133_76(BX294133|pid:none) Rhodopirellula baltica SH 1 compl... 47 0.002
CP000821_3939(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 47 0.002
CP000507_2940(CP000507|pid:none) Shewanella amazonensis SB2B, co... 47 0.002
AP009385_1832(AP009385|pid:none) Burkholderia multivorans ATCC 1... 47 0.003
CP000512_3353(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 47 0.003
(Q7N1C0) RecName: Full=tRNA-modifying protein ygfZ; &BX571871_1... 47 0.003
CP001339_1443(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 47 0.003
AE015451_1411(AE015451|pid:none) Pseudomonas putida KT2440 compl... 47 0.003
CP000113_6180(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 46 0.004
(Q31WG0) RecName: Full=tRNA-modifying protein ygfZ; &CP000036_2... 46 0.004
CP000360_2624(CP000360|pid:none) Acidobacteria bacterium Ellin34... 46 0.004
CU468135_2792(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 46 0.005
FM954972_2494(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 46 0.005
(P44000) RecName: Full=Uncharacterized protein HI0466; &I64007(... 46 0.005
AE017282_234(AE017282|pid:none) Methylococcus capsulatus str. Ba... 46 0.005
CP000151_2006(CP000151|pid:none) Burkholderia sp. 383 chromosome... 45 0.007
(B7N7E2) RecName: Full=tRNA-modifying protein ygfZ; &CU928163_3... 45 0.007
(B1ITA4) RecName: Full=tRNA-modifying protein ygfZ; &CP000946_7... 45 0.009
(B7NW39) RecName: Full=tRNA-modifying protein ygfZ; &CU928164_3... 45 0.009
CP000614_1795(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 45 0.009
CP000958_1898(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 45 0.009
CP000380_695(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 45 0.009
(A7ZR07) RecName: Full=tRNA-modifying protein ygfZ; &(A8A439) R... 45 0.012
AY458642_63(AY458642|pid:none) Uncultured marine bacterium 560 c... 45 0.012
(Q0TDV3) RecName: Full=tRNA-modifying protein ygfZ; &CP000247_2... 45 0.012
CP000970_2934(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 45 0.012
CP001111_1533(CP001111|pid:none) Stenotrophomonas maltophilia R5... 45 0.012
CP001080_1124(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 45 0.012
(A1AF88) RecName: Full=tRNA-modifying protein ygfZ; &(B7MM85) R... 44 0.016
CP000057_518(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 44 0.020
CP001344_2310(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 44 0.020
CP001503_1315(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 44 0.020
EF089399_20(EF089399|pid:none) Uncultured marine bacterium EB0_3... 44 0.020
(Q3YXX2) RecName: Full=tRNA-modifying protein ygfZ; &CP000038_2... 44 0.027
(Q493E3) RecName: Full=tRNA-modifying protein ygfZ; &CP000016_2... 44 0.027
BA000021_437(BA000021|pid:none) Wigglesworthia glossinidia endos... 43 0.035
(B7LPB2) RecName: Full=tRNA-modifying protein ygfZ; &CU928158_2... 43 0.035
CP000503_801(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 43 0.045
(A7MTS4) RecName: Full=tRNA-modifying protein ygfZ; &CP000789_3... 42 0.059
CP000647_3262(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 42 0.059
CP000891_867(CP000891|pid:none) Shewanella baltica OS195, comple... 42 0.059
CP000304_1206(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 42 0.059
AM233362_1114(AM233362|pid:none) Francisella tularensis subsp. h... 42 0.077
CP000753_818(CP000753|pid:none) Shewanella baltica OS185, comple... 42 0.077
CP000393_4129(CP000393|pid:none) Trichodesmium erythraeum IMS101... 42 0.077
CP000924_1941(CP000924|pid:none) Thermoanaerobacter pseudethanol... 42 0.077
CP000804_3444(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 42 0.077
AP006725_4186(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 42 0.077
CP001252_836(CP001252|pid:none) Shewanella baltica OS223, comple... 42 0.077
(Q7VRF7) RecName: Full=tRNA-modifying protein ygfZ; &BX248583_2... 42 0.10
AE009442_320(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 42 0.10
A82728(A82728) conserved hypothetical protein XF1068 [imported] ... 42 0.10
AJ749949_1088(AJ749949|pid:none) Francisella tularensis subsp. t... 41 0.17
CP000915_982(CP000915|pid:none) Francisella tularensis subsp. me... 41 0.17
CP000563_3443(CP000563|pid:none) Shewanella baltica OS155, compl... 41 0.17
CP000444_3281(CP000444|pid:none) Shewanella sp. MR-7, complete g... 40 0.23
CP000951_1066(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 40 0.23
CP000875_3434(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 40 0.23
CP000446_715(CP000446|pid:none) Shewanella sp. MR-4, complete ge... 40 0.23
DQ366744_16(DQ366744|pid:none) Uncultured Prochlorococcus marinu... 40 0.38
(Q5WF30) RecName: Full=Aminomethyltransferase; EC=2.1.2... 40 0.38
(A7MR73) RecName: Full=tRNA-modifying protein ygfZ; &CP000783_4... 40 0.38
BA000022_2385(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 39 0.50
CT971583_280(CT971583|pid:none) Synechococcus WH7803 complete ge... 39 0.50
BX548174_284(BX548174|pid:none) Prochlorococcus marinus MED4 com... 39 0.50
CP000551_300(CP000551|pid:none) Prochlorococcus marinus str. AS9... 39 0.86
CP001337_1209(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 39 0.86
AE013598_2274(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 38 1.1
CP000967_2219(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 38 1.1
CP001032_503(CP001032|pid:none) Opitutus terrae PB90-1, complete... 38 1.5
CP000909_2560(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 38 1.5
AE008923_2038(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 37 1.9
CP001087_743(CP001087|pid:none) Desulfobacterium autotrophicum H... 37 2.5
CP001229_909(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 37 2.5
CR543861_637(CR543861|pid:none) Acinetobacter sp. ADP1 complete ... 37 2.5
AE017126_308(AE017126|pid:none) Prochlorococcus marinus subsp. m... 37 3.2
AE000657_1384(AE000657|pid:none) Aquifex aeolicus VF5, complete ... 37 3.2
AE000513_346(AE000513|pid:none) Deinococcus radiodurans R1 chrom... 37 3.2
AM039952_2239(AM039952|pid:none) Xanthomonas campestris pv. vesi... 37 3.2
AM910994_540(AM910994|pid:none) Plasmodium knowlesi strain H chr... 37 3.2
CP000975_2177(CP000975|pid:none) Methylacidiphilum infernorum V4... 37 3.2
DQ407063_1(DQ407063|pid:none) Helianthus annuus RNA polymerase b... 36 4.2
(Q1KXX0) RecName: Full=DNA-directed RNA polymerase subunit beta'... 36 4.2
CP000323_169(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 36 4.2
CP000082_159(CP000082|pid:none) Psychrobacter arcticus 273-4, co... 36 4.2
CP000713_316(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 36 4.2
CP001365_330(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 36 5.5
CP000552_310(CP000552|pid:none) Prochlorococcus marinus str. MIT... 36 5.5
CP000878_304(CP000878|pid:none) Prochlorococcus marinus str. MIT... 35 7.2
BX569689_237(BX569689|pid:none) Synechococcus sp. WH8102 complet... 35 7.2
CP000111_287(CP000111|pid:none) Prochlorococcus marinus str. MIT... 35 7.2
AL645854_7(AL645854|pid:none) Mouse DNA sequence from clone RP23... 35 7.2
AE017125_1358(AE017125|pid:none) Helicobacter hepaticus ATCC 514... 35 9.5
AM910983_104(AM910983|pid:none) Plasmodium knowlesi strain H chr... 35 9.5
CP000481_62(CP000481|pid:none) Acidothermus cellulolyticus 11B s... 35 9.5
AE017221_1463(AE017221|pid:none) Thermus thermophilus HB27, comp... 35 9.5
BC068814_1(BC068814|pid:none) Xenopus laevis hypothetical protei... 35 9.5

>AY139983_1(AY139983|pid:none) Arabidopsis thaliana putative protein
(At4g12130) mRNA, complete cds.
&BT008478_1(BT008478|pid:none)
Length = 393

Score = 137 bits (344), Expect = 2e-30
Identities = 89/273 (32%), Positives = 130/273 (47%), Gaps = 24/273 (8%)
Frame = +2

Query: 608 LKSRSLIKVVGPDALKHLQGLTTNNLNRLKDNQS--------------TNTSIYNGFLQG 745
LKSRS+++ GPD +K LQGL TN++ R ++ TN +Y L
Sbjct: 35 LKSRSVVRFSGPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPMYAALLTP 94

Query: 746 NGRLLFDSIIALDREHHNGNPKPISMAPGSSDNSGLDSFIVDIDSSILEEAMAHLKQYKL 925
GR L+D + + S S G D+D +L+E + LK+Y+L
Sbjct: 95 QGRFLYDFFLYSPSRPDEKLDRTGSGPGSDSGRDGSVELFADVDVDVLDELLETLKKYRL 154

Query: 926 RNKIDIIDVTENFNVYSILDKTYK----------TVRDDSLFAQLEKDQCSVMMDPRHQI 1075
R+K+DI +V E F+ + + R A K DPR +
Sbjct: 155 RSKVDIENVAEEFSCWQRYGRNLTGSSSVGWGGGVDRAGESTASGNKYGWQWYKDPRLEC 214

Query: 1076 MGVRLLVPNNKQLVVEERLSKYESKDETIYNLFRLSQGIPQGVKEYQWGNIIPLEYNFDL 1255
+G R + P++ + E + DE+ Y L+RL G+ +G E G IPLEYNF
Sbjct: 215 LGYRSIFPSDATPPLVEA---DKETDESNYLLWRLEHGVAEGSAEIPKGEAIPLEYNFVG 271

Query: 1256 LNGVDFHKGCYLGQELTSRTHFTGLIRKRIFPV 1354
LN + F KGCY+GQEL +RTH G+IRKR+ P+
Sbjct: 272 LNAISFDKGCYVGQELIARTHHRGVIRKRLIPL 304

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,151,407,081
Number of extensions: 38014876
Number of successful extensions: 108119
Number of sequences better than 10.0: 270
Number of HSP's gapped: 107984
Number of HSP's successfully gapped: 292
Length of query: 624
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 489
Effective length of database: 614,245,399
Effective search space: 300366000111
Effective search space used: 300366000111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.93 gvh: 0.53 alm: 0.19 top: 0.43 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.70 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
16.0 %: nuclear
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U12194-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 6
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0