| Contig-U12180-1 |
| Contig ID |
Contig-U12180-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
783 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
6015799 |
| End point |
6015015 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U12180 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.29 |
| Homology vs DNA |
Query= Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Contig-U12180-1Q.Seq.d
(793 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 363 0.0 5
(AU062232) Dictyostelium discoideum slug cDNA, clone SLI555. 420 e-113 1
(BJ380611) Dictyostelium discoideum cDNA clone:ddc38a22, 3' ... 317 e-110 2
(AU053397) Dictyostelium discoideum slug cDNA, clone SLI555. 216 4e-85 2
(EJ723740) 1092959476428 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.032 1
(EJ687414) 1092955196053 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.032 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 42 0.29 6
(AC221273) Bos taurus clone CH240-401M9, WORKING DRAFT SEQUE... 48 0.51 1
(AC180665) Strongylocentrotus purpuratus clone R3-3089J14, W... 48 0.51 1
(EE677676) EST241 subtracted libraries from oysters exposed ... 48 0.51 1
(CU468417) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.1 2
(AC224581) Bos taurus clone CH240-481G3, WORKING DRAFT SEQUE... 44 1.3 3
(AB028618) Arabidopsis thaliana genomic DNA, chromosome 3, P... 46 2.0 1
(CU639453) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(CU457436) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(AC174258) Strongylocentrotus purpuratus clone R3-1113M23, W... 46 2.0 1
(AC173988) Bos taurus clone CH240-528N13, WORKING DRAFT SEQU... 46 2.0 1
(BX842144) Arabidopsis thaliana Full-length cDNA Complete se... 46 2.0 1
(EK126240) 1092984401090 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.0 1
(CT426213) Sus scrofa genomic clone CH242-500D15, genomic su... 46 2.0 1
(DC091562) Xenopus laevis NBRP cDNA clone:rxl311p05, 3' end. 46 2.0 1
(CT797138) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.0 1
(CT788833) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.0 1
(CT773270) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 2.0 1
(AQ126123) HS_3036_A1_E01_MF CIT Approved Human Genomic Sper... 34 3.1 2
(AC171998) Bos taurus clone CH240-278F11, WORKING DRAFT SEQU... 34 3.8 2
(AC170838) Bos taurus clone CH240-253I13, WORKING DRAFT SEQU... 34 3.8 2
(EI926658) VUH2-67G18TV VUUBBa (VUH2) Vigna unguiculata geno... 34 4.6 2
(FF337110) 280463857 Pea aphid whole body normalized full le... 40 4.8 2
(CU468400) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 5.0 4
(AC188072) Macaca mulatta chromosome UNK clone CH250-13H12, ... 44 7.9 1
(CR382123) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 44 7.9 1
(AM430783) Vitis vinifera contig VV78X205339.5, whole genome... 44 7.9 1
(AC007864) Trypanosoma brucei chromosome 2 clone RPCI93-28H1... 44 7.9 1
(CU861899) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.9 1
(AC222242) Bos taurus clone CH240-413B1, WORKING DRAFT SEQUE... 44 7.9 1
(AC183240) Bos taurus clone CH240-97O15, WORKING DRAFT SEQUE... 44 7.9 1
(AC172979) Bos taurus clone CH240-241G13, WORKING DRAFT SEQU... 44 7.9 1
(AQ950970) Sheared DNA-51A15.TF Sheared DNA Trypanosoma bruc... 44 7.9 1
(AQ945258) Sheared DNA-46B15.TR Sheared DNA Trypanosoma bruc... 44 7.9 1
(AQ642116) RPCI93-EcoRI-1N1.TV RPCI93-EcoRI Trypanosoma bruc... 44 7.9 1
(ER628284) 1093018372321 Global-Ocean-Sampling_GS-36-01-01-2... 44 7.9 1
(AL455674) T. brucei sheared genomic DNA clone 59g10, forwar... 44 7.9 1
(DU477065) 1098415760875 CHORI-243 Ovis aries genomic clone ... 44 7.9 1
(DU410536) 1098396072901 CHORI-243 Ovis aries genomic clone ... 44 7.9 1
(DU330672) 1098268360847 CHORI-243 Ovis aries genomic clone ... 44 7.9 1
(EH015581) USDA-FP_182417 Lysiphlebus testaceipes adult whol... 44 7.9 1
(CT822658) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT822035) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT821615) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT821190) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT819301) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT816037) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT815511) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT812644) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT812256) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT811082) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT808979) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT801065) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT791449) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT790351) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT789538) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT787352) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT785782) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT782428) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT781311) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT778019) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT776917) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT775412) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT775100) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT774392) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT772492) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT753027) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(CT748122) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.9 1
(FF481176) G613P6238RF7.T0 Acorn worm blastula/gastrula pCMV... 44 7.9 1
(FF475863) G613P6143RG11.T0 Acorn worm blastula/gastrula pCM... 44 7.9 1
(FF462633) G50P6188RG1.T0 Acorn worm gastrula/neurula pCMVSp... 44 7.9 1
(FF448275) G178P60096RG1.T0 Acorn worm gastrula/neurula pCMV... 44 7.9 1
(FE121162) LV_HC_RA073B21f Litopenaeus vannamei hemocyte cDN... 44 7.9 1
(FE120381) LV_HC_RA071N22f Litopenaeus vannamei hemocyte cDN... 44 7.9 1
(FE120380) LV_HC_RA071L22r Litopenaeus vannamei hemocyte cDN... 44 7.9 1
(CP000312) Clostridium perfringens SM101, complete genome. 44 7.9 1
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 44 7.9 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 44 7.9 1
(AC154137) Tribolium castaneum clone T.cast_C51A20, WORKING ... 36 8.9 4
(EA266338) Sequence 528 from patent US 7241867. 40 9.9 2
(DD419490) GENES OF AN OTITIS MEDIA ISOLATE OF NONTYPEABLE H... 40 9.9 2
(CQ872915) Sequence 528 from Patent WO2004078949. 40 9.9 2
(AC080009) Homo sapiens 3q BAC RP11-460M17 (Roswell Park Can... 40 10.0 3
>(AC116551) Dictyostelium discoideum chromosome 2 map
complement(581327-427576) strain AX4, complete sequence.
Length = 153751
Score = 363 bits (183), Expect(5) = 0.0
Identities = 192/196 (97%)
Strand = Plus / Minus
Query: 223 tatttcaaaaccaatgagtaagcnaaccaaacaaaaanatagaactaaactttatgaatc 282
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 111710 tatttcaaaaccaatgagtaagcaaaccaaacaaaaagatagaactaaactttatgaatc 111651
Query: 283 atttgatgataaanacttcaaaccttggtttggaaagagagtaccacctttagcaaatga 342
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 111650 atttgatgataaatacttcaaaccttggtttagaaagagagtaccacctttagcaaatga 111591
Query: 343 agcaattgaaatctttgaaaaaatggttattcaatcctcacacgatcatgaattggattc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111590 agcaattgaaatctttgaaaaaatggttattcaatcctcacacgatcatgaattggattc 111531
Query: 403 taatccattacgtttc 418
||||||||||||||||
Sbjct: 111530 taatccattacgtttc 111515
Score = 283 bits (143), Expect(5) = 0.0
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 29 actgatttctttaataatattggaccaattttaatgtttgctgtatttggtacaattatt 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112939 actgatttctttaataatattggaccaattttaatgtttgctgtatttggtacaattatt 112880
Query: 89 acatttttagttgttggatttggcatttatatagttggttactttggtgtatcaatagca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112879 acatttttagttgttggatttggcatttatatagttggttactttggtgtatcaatagca 112820
Query: 149 ctttcattaaaagattcatttgc 171
|||||||||||||||||||||||
Sbjct: 112819 ctttcattaaaagattcatttgc 112797
Score = 137 bits (69), Expect(5) = 0.0
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 589 tcactccaatgatggaagtaataacaaaaataatgatacattaccacttatttaatatta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111344 tcactccaatgatggaagtaataacaaaaataatgatacattaccacttatttaatatta 111285
Query: 649 aaatatata 657
|||||||||
Sbjct: 111284 aaatatata 111276
Score = 81.8 bits (41), Expect(5) = 0.0
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 172 atttggatcaattattagtagtacagatccagtttgtacat 212
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 112672 atttggatcaattattagtagtacagatccagtttgtacat 112632
Score = 56.0 bits (28), Expect(5) = 0.0
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 1 ctttgaaactggttattctttacataaa 28
||||||||||||||||||||||||||||
Sbjct: 113075 ctttgaaactggttattctttacataaa 113048
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 613,434,535
Number of extensions: 38751592
Number of successful extensions: 3303188
Number of sequences better than 10.0: 90
Length of query: 793
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 769
Effective length of database: 97,308,875,965
Effective search space: 74830525617085
Effective search space used: 74830525617085
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 2 |
| Homology vs Protein |
Query= Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Contig-U12180-1Q.Seq.d
(793 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116551_49(AC116551|pid:none) Dictyostelium discoideum chromoso... 143 7e-33
AY069724_1(AY069724|pid:none) Drosophila melanogaster LP02993 fu... 90 7e-17
(Q9Y2E8) RecName: Full=Sodium/hydrogen exchanger 8; AltName: Ful... 87 5e-16
AY496958_1(AY496958|pid:none) Rattus norvegicus sodium-hydrogen ... 87 5e-16
AB168343_1(AB168343|pid:none) Macaca fascicularis testis cDNA cl... 87 5e-16
AK173069_1(AK173069|pid:none) Mus musculus mRNA for mKIAA0939 pr... 87 5e-16
CQ834472_1(CQ834472|pid:none) Sequence 343 from Patent WO2004058... 87 5e-16
BC086841_1(BC086841|pid:none) Danio rerio solute carrier family ... 87 8e-16
EF591988_1(EF591988|pid:none) Danio rerio sodium hydrogen exchan... 87 8e-16
EU272023_1(EU272023|pid:none) Manduca sexta sodium/hydrogen exch... 84 4e-15
AE014134_19(AE014134|pid:none) Drosophila melanogaster chromosom... 84 7e-15
AF497832_1(AF497832|pid:none) Caenorhabditis elegans putative Na... 71 5e-11
AF497833_1(AF497833|pid:none) Caenorhabditis elegans putative Na... 71 5e-11
T26529(T26529)hypothetical protein Y18D10A.6 - Caenorhabditis el... 71 5e-11
CP001574_750(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 68 4e-10
FM992693_49(FM992693|pid:none) Candida dubliniensis CD36 chromos... 62 2e-08
CP000499_54(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso... 61 4e-08
CP001325_471(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 61 4e-08
(Q04121) RecName: Full=Endosomal/prevacuolar sodium/hydrogen exc... 59 1e-07
FN392320_162(FN392320|pid:none) Pichia pastoris GS115 chromosome... 59 2e-07
AF490590_1(AF490590|pid:none) Arabidopsis thaliana Na+/H+ exchan... 59 2e-07
DQ314285_1(DQ314285|pid:none) Hordeum vulgare cultivar Moscovski... 58 3e-07
EU233808_1(EU233808|pid:none) Plantago maritima Na+/H+ antiporte... 58 3e-07
AY615731_1(AY615731|pid:none) Debaryomyces hansenii putative Na+... 58 3e-07
CR382132_97(CR382132|pid:none) Yarrowia lipolytica strain CLIB12... 58 4e-07
FN317322_1(FN317322|pid:none) Schistosoma japonicum isolate Anhu... 58 4e-07
AY832912_1(AY832912|pid:none) Populus tomentosa Na+/H+ antiporte... 57 5e-07
BT039897_1(BT039897|pid:none) Zea mays full-length cDNA clone ZM... 57 5e-07
AJ306631_1(AJ306631|pid:none) Lycopersicon esculentum mRNA for N... 57 5e-07
FN357618_16(FN357618|pid:none) Schistosoma mansoni genome sequen... 57 9e-07
DQ303231_1(DQ303231|pid:none) Karelinia caspia Na+/H+ antiporter... 57 9e-07
(Q8S396) RecName: Full=Sodium/hydrogen exchanger 5; AltName: Ful... 57 9e-07
AM901401_1(AM901401|pid:none) Mesembryanthemum crystallinum mRNA... 56 1e-06
AF279670_1(AF279670|pid:none) Mesembryanthemum crystallinum puta... 56 1e-06
AE016818_648(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 56 2e-06
CU633900_431(CU633900|pid:none) Podospora anserina genomic DNA c... 55 3e-06
FN357406_22(FN357406|pid:none) Schistosoma mansoni genome sequen... 55 3e-06
AM261866_1(AM261866|pid:none) Lycopersicon esculentum mRNA for (... 54 4e-06
AB051819_1(AB051819|pid:none) Torenia hybrida mRNA for Na H-anti... 54 4e-06
AF507044_1(AF507044|pid:none) Lophopyrum elongatum Na+/H+ antipo... 54 4e-06
DQ285410_1(DQ285410|pid:none) Hordeum brevisubulatum vacuolar Na... 54 6e-06
CR382122_68(CR382122|pid:none) Kluyveromyces lactis strain NRRL ... 54 6e-06
AE017344_430(AE017344|pid:none) Cryptococcus neoformans var. neo... 54 6e-06
AY184476_1(AY184476|pid:none) Hordeum brevisubulatum Na+/H+ anti... 54 8e-06
DQ372061_1(DQ372061|pid:none) Hordeum vulgare Na+/H+ antiporter ... 54 8e-06
CU928176_586(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 54 8e-06
AE014134_3447(AE014134|pid:none) Drosophila melanogaster chromos... 53 1e-05
AY048581_1(AY048581|pid:none) Drosophila melanogaster sodium-hyd... 53 1e-05
AE014134_3443(AE014134|pid:none) Drosophila melanogaster chromos... 53 1e-05
AY128467_1(AY128467|pid:none) Drosophila melanogaster RE21674 fu... 53 1e-05
AF497830_1(AF497830|pid:none) Caenorhabditis elegans putative Na... 53 1e-05
AE014134_3448(AE014134|pid:none) Drosophila melanogaster chromos... 53 1e-05
BT044062_1(BT044062|pid:none) Drosophila melanogaster AT11019 fu... 53 1e-05
DQ453965_1(DQ453965|pid:none) Oryza sativa (indica cultivar-grou... 53 1e-05
AE014134_3446(AE014134|pid:none) Drosophila melanogaster chromos... 53 1e-05
AF235935_1(AF235935|pid:none) Drosophila melanogaster sodium/hyd... 53 1e-05
AY296910_1(AY296910|pid:none) Triticum aestivum Na+/H+ antiporte... 53 1e-05
FJ843078_1(FJ843078|pid:none) Cucumis melo Na+/H+ antiporter mRN... 53 1e-05
AB051817_1(AB051817|pid:none) Petunia x hybrida mRNA for Na H-an... 53 1e-05
AJ851666_1(AJ851666|pid:none) Gallus gallus mRNA for hypothetica... 53 1e-05
BT042669_1(BT042669|pid:none) Zea mays full-length cDNA clone ZM... 52 2e-05
BC166339_1(BC166339|pid:none) Xenopus tropicalis solute carrier ... 52 2e-05
AY461512_1(AY461512|pid:none) Triticum aestivum Na+/H+ antiporte... 52 2e-05
(Q96T83) RecName: Full=Sodium/hydrogen exchanger 7; AltName: Ful... 52 2e-05
AL832304_1(AL832304|pid:none) Homo sapiens mRNA; cDNA DKFZp667G0... 52 2e-05
AK301816_1(AK301816|pid:none) Homo sapiens cDNA FLJ55881 complet... 52 2e-05
(Q84WG1) RecName: Full=Sodium/hydrogen exchanger 3; AltName: Ful... 52 2e-05
(Q8BLV3) RecName: Full=Sodium/hydrogen exchanger 7; AltName: Ful... 52 2e-05
(Q8IVB4) RecName: Full=Sodium/hydrogen exchanger 9; AltName: Ful... 52 2e-05
AC011623_13(AC011623|pid:none) Arabidopsis thaliana chromosome I... 52 2e-05
AK315107_1(AK315107|pid:none) Homo sapiens cDNA, FLJ96067, highl... 52 2e-05
AP007150_534(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 52 2e-05
BC058750_1(BC058750|pid:none) Mus musculus solute carrier family... 52 2e-05
CR380953_309(CR380953|pid:none) Candida glabrata strain CBS138 c... 52 3e-05
AE014134_1191(AE014134|pid:none) Drosophila melanogaster chromos... 52 3e-05
BC119838_1(BC119838|pid:none) Bos taurus solute carrier family 9... 52 3e-05
AB364288_1(AB364288|pid:none) Zostera marina ZoMNHX1 gene for Na... 52 3e-05
AE014134_1193(AE014134|pid:none) Drosophila melanogaster chromos... 52 3e-05
BT015967_1(BT015967|pid:none) Drosophila melanogaster RH21989 fu... 52 3e-05
BC099942_1(BC099942|pid:none) Mus musculus solute carrier family... 52 3e-05
BC096982_1(BC096982|pid:none) Danio rerio zgc:113878, mRNA (cDNA... 51 4e-05
AM920427_708(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 51 4e-05
AY270036_1(AY270036|pid:none) Zea mays Na+/H+ antiporter NHX1 mR... 51 4e-05
EU971537_1(EU971537|pid:none) Zea mays clone 366774 sodium/hydro... 51 4e-05
AY122620_1(AY122620|pid:none) Aedes aegypti truncated Na+/H+ exc... 51 4e-05
(Q8BZ00) RecName: Full=Sodium/hydrogen exchanger 9; AltName: Ful... 51 4e-05
AB371286_1(AB371286|pid:none) Zostera marina ZomNHX2 mRNA for va... 51 4e-05
EF591987_1(EF591987|pid:none) Danio rerio sodium hydrogen exchan... 51 4e-05
(Q8S397) RecName: Full=Sodium/hydrogen exchanger 4; AltName: Ful... 51 5e-05
AY848951_1(AY848951|pid:none) Thinopyrum elongatum Na+/H+ antipo... 50 6e-05
AP008217_1380(AP008217|pid:none) Oryza sativa (japonica cultivar... 50 6e-05
AY131235_1(AY131235|pid:none) Salicornia europaea Na+/H+ antipor... 50 6e-05
AF472486_1(AF472486|pid:none) Triticum aestivum clone hanfeng970... 50 6e-05
EU073422_1(EU073422|pid:none) Salsola soda Na+/H+ antiporter mRN... 50 6e-05
AY261806_1(AY261806|pid:none) Suaeda maritima subsp. salsa Na+/H... 50 8e-05
AF370358_1(AF370358|pid:none) Suaeda maritima subsp. salsa Na+/H... 50 8e-05
AY270041_1(AY270041|pid:none) Zea mays Na+/H+ antiporter NHX6 mR... 50 8e-05
(P26433) RecName: Full=Sodium/hydrogen exchanger 3; AltName: Ful... 50 8e-05
U93492_1(U93492|pid:none) Meriones unguiculatus NHE-3 mRNA, part... 50 8e-05
(P26432) RecName: Full=Sodium/hydrogen exchanger 3; AltName: Ful... 50 1e-04
AB306942_1(AB306942|pid:none) Hynobius nigrescens NHE3 mRNA for ... 50 1e-04
AC148814_22(AC148814|pid:none) Oryza sativa (japonica cultivar-g... 50 1e-04
AF199463_1(AF199463|pid:none) Drosophila melanogaster sodium-hyd... 50 1e-04
AF497831_1(AF497831|pid:none) Caenorhabditis elegans putative Na... 50 1e-04
AY270037_1(AY270037|pid:none) Zea mays Na+/H+ antiporter NHX2 mR... 50 1e-04
DQ304690_1(DQ304690|pid:none) Karelinia caspia vacuolar Na+/H+ a... 50 1e-04
AY607752_1(AY607752|pid:none) Helix aspersa sodium/hydrogen exch... 49 1e-04
AK296444_1(AK296444|pid:none) Homo sapiens cDNA FLJ54617 complet... 49 1e-04
(Q92581) RecName: Full=Sodium/hydrogen exchanger 6; AltName: Ful... 49 1e-04
AL672085_2(AL672085|pid:none) Mouse DNA sequence from clone RP23... 49 1e-04
AK122232_1(AK122232|pid:none) Mus musculus mRNA for mKIAA0267 pr... 49 1e-04
AK289775_1(AK289775|pid:none) Homo sapiens cDNA FLJ75020 complet... 49 1e-04
BC035029_1(BC035029|pid:none) Homo sapiens solute carrier family... 49 1e-04
D87743_1(D87743|pid:none) Human mRNA for KIAA0267 gene, partial ... 49 1e-04
AL732579_5(AL732579|pid:none) Human DNA sequence from clone RP11... 49 1e-04
DQ492248_1(DQ492248|pid:none) Equus caballus solute carrier fami... 49 1e-04
EF159151_1(EF159151|pid:none) Helianthus tuberosus antiporter pr... 49 1e-04
EU482408_1(EU482408|pid:none) Sorghum bicolor sodium proton anti... 49 1e-04
BC151331_1(BC151331|pid:none) Bos taurus solute carrier family 9... 49 1e-04
EF672046_1(EF672046|pid:none) Sus scrofa sodium hydrogen exchang... 49 1e-04
EF591985_1(EF591985|pid:none) Danio rerio sodium hydrogen exchan... 49 2e-04
AF497828_1(AF497828|pid:none) Caenorhabditis elegans putative Na... 49 2e-04
AF497829_1(AF497829|pid:none) Caenorhabditis elegans putative Na... 49 2e-04
T22848(T22848)hypothetical protein F57C7.2 - Caenorhabditis eleg... 49 2e-04
(Q9UBY0) RecName: Full=Sodium/hydrogen exchanger 2; AltName: Ful... 49 2e-04
AM072969_11(AM072969|pid:none) Brachypodium sylvaticum clone 28C... 49 2e-04
(P48764) RecName: Full=Sodium/hydrogen exchanger 3; AltName: Ful... 48 3e-04
DQ157454_1(DQ157454|pid:none) Salicornia bigelovii Na+/H+ antipo... 48 3e-04
BC143328_1(BC143328|pid:none) Homo sapiens solute carrier family... 48 3e-04
A57644(A57644) Na+/H+-exchanging protein 2 - human &S81591_1(S8... 48 4e-04
(P48763) RecName: Full=Sodium/hydrogen exchanger 2; AltName: Ful... 48 4e-04
AF307944_1(AF307944|pid:none) Zea mays Na+/H+ antiporter mRNA, p... 48 4e-04
L11004_1(L11004|pid:none) Rat sodium-hydrogen exchange protein-i... 48 4e-04
AB038492_1(AB038492|pid:none) Atriplex gmelini AgNHX1 mRNA for N... 48 4e-04
AY211397_1(AY211397|pid:none) Atriplex dimorphostegia Na/H antip... 48 4e-04
AP008212_978(AP008212|pid:none) Oryza sativa (japonica cultivar-... 47 5e-04
EU103624_1(EU103624|pid:none) Zygophyllum xanthoxylum vacuolar N... 47 7e-04
BC103685_1(BC103685|pid:none) Mus musculus solute carrier family... 47 7e-04
EU448383_1(EU448383|pid:none) Salicornia brachiata Na+/H+ antipo... 47 7e-04
EU333827_1(EU333827|pid:none) Zoysia japonica Na+/H+ antiporter ... 47 7e-04
AB199912_1(AB199912|pid:none) Rosa hybrid cultivar NHX mRNA for ... 47 7e-04
EU810375_1(EU810375|pid:none) Zoarces viviparus sodium-hydrogen ... 47 0.001
AB054979_1(AB054979|pid:none) Ipomoea tricolor ItNHX1 mRNA for N... 47 0.001
AB033989_1(AB033989|pid:none) Ipomoea nil Purple mRNA for Na+/H+... 47 0.001
AM746985_1(AM746985|pid:none) Mesembryanthemum crystallinum mRNA... 47 0.001
EF396235_1(EF396235|pid:none) Chrysanthemum x morifolium Na+/H+ ... 47 0.001
AB292774_1(AB292774|pid:none) Ipomoea tricolor nhx1 mRNA for Na+... 47 0.001
(Q14940) RecName: Full=Sodium/hydrogen exchanger 5; AltName: Ful... 46 0.001
AP003507_20(AP003507|pid:none) Oryza sativa Japonica Group genom... 46 0.001
(P26434) RecName: Full=Sodium/hydrogen exchanger 4; AltName: Ful... 46 0.001
AF260664_1(AF260664|pid:none) Sus scrofa sodium/hydrogen exchang... 46 0.001
BT071443_1(BT071443|pid:none) Picea sitchensis clone WS02912_I16... 46 0.001
(Q8BUE1) RecName: Full=Sodium/hydrogen exchanger 4; AltName: Ful... 46 0.002
BC052708_1(BC052708|pid:none) Mus musculus solute carrier family... 46 0.002
(P48761) RecName: Full=Sodium/hydrogen exchanger 1; AltName: Ful... 46 0.002
(Q61165) RecName: Full=Sodium/hydrogen exchanger 1; AltName: Ful... 46 0.002
AE000782_834(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,... 46 0.002
AC174299_21(AC174299|pid:none) Medicago truncatula clone mth2-80... 46 0.002
AK154857_1(AK154857|pid:none) Mus musculus NOD-derived CD11c +ve... 46 0.002
A40204(A40204)Na+/H+-exchanging protein 1 - rat 46 0.002
BC051431_1(BC051431|pid:none) Mus musculus solute carrier family... 46 0.002
AF515632_1(AF515632|pid:none) Gossypium hirsutum Na/H antiporter... 46 0.002
AB200332_1(AB200332|pid:none) Takifugu obscurus Slc9a1 mRNA for ... 45 0.002
AK314190_1(AK314190|pid:none) Homo sapiens cDNA, FLJ94915, highl... 45 0.002
AY028416_1(AY028416|pid:none) Citrus x paradisi sodium/proton ex... 45 0.002
EF675631_1(EF675631|pid:none) Robinia pseudoacacia Na+/H+ transp... 45 0.002
(P48762) RecName: Full=Sodium/hydrogen exchanger 1; AltName: Ful... 45 0.002
X61504_1(X61504|pid:none) O.cuniculus NHE-1 mRNA for renal Na(+)... 45 0.002
(P23791) RecName: Full=Sodium/hydrogen exchanger 1; AltName: Ful... 45 0.002
AF311207_1(AF311207|pid:none) Canis familiaris Na+/H+ exchanger ... 45 0.002
AB021878_1(AB021878|pid:none) Oryza sativa Japonica Group OsNHX1... 45 0.002
A48858(A48858;I46613) Na+/H+-exchanging protein - pig &S71135_1... 45 0.002
BX629348_1(BX629348|pid:none) Zebrafish DNA sequence from clone ... 45 0.002
EF591983_1(EF591983|pid:none) Danio rerio sodium hydrogen exchan... 45 0.002
AL137860_2(AL137860|pid:none) Human DNA sequence from clone RP4-... 45 0.002
AC130801_15(AC130801|pid:none) Medicago truncatula clone mth2-12... 45 0.002
DQ334404_1(DQ334404|pid:none) Triticum aestivum Na+/H+ antiporte... 45 0.003
AY040246_1(AY040246|pid:none) Triticum aestivum Na+/H+ antiporte... 45 0.003
B40205(B40205)Na+/H+-exchanging protein 3 - human (fragment) 45 0.003
DQ334405_1(DQ334405|pid:none) Triticum aestivum Na+/H+ antiporte... 45 0.003
AF007271_11(AF007271|pid:none) Arabidopsis thaliana BAC TM021B04... 45 0.004
M81768_1(M81768|pid:none) Human Na/H antiporter (APNH1) mRNA, co... 45 0.004
(Q68KI4) RecName: Full=Sodium/hydrogen exchanger 1; AltName: Ful... 45 0.004
AY685183_1(AY685183|pid:none) Arabidopsis thaliana sodium proton... 45 0.004
DQ995339_1(DQ995339|pid:none) Thellungiella halophila Na+/H+ ant... 44 0.005
AF510074_1(AF510074|pid:none) Arabidopsis thaliana Na+/H+ antipo... 44 0.006
DQ256198_1(DQ256198|pid:none) Gallus gallus sodium-hydrogen exch... 44 0.006
AJ853472_1(AJ853472|pid:none) Populus euphratica partial mRNA fo... 44 0.006
CP000254_653(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 44 0.006
AY189676_1(AY189676|pid:none) Brassica napus Na+/H+ vacuolar ant... 44 0.006
EU340284_1(EU340284|pid:none) Galega orientalis Na+/H+ antiporte... 44 0.008
AF239763_1(AF239763|pid:none) Drosophila melanogaster sodium-hyd... 43 0.010
AM261867_1(AM261867|pid:none) Lycopersicon esculentum mRNA for (... 43 0.010
AY660749_1(AY660749|pid:none) Populus tomentosa Na+/H+ antiporte... 43 0.010
EU109427_1(EU109427|pid:none) Trifolium repens Na+/H+ antiporter... 43 0.013
AY972078_1(AY972078|pid:none) Glycine max Na+/H+ antiporter mRNA... 43 0.013
AY392759_1(AY392759|pid:none) Glycine max sodium/proton antiport... 43 0.013
AF144087_1(AF144087|pid:none) Amphiuma tridactylum sodium proton... 42 0.018
A46188(A46188)cAMP-activated Na+/H+-exchanging protein betaNHE -... 42 0.018
AM445931_1(AM445931|pid:none) Vitis vinifera contig VV78X187450.... 42 0.023
BX005424_4(BX005424|pid:none) Zebrafish DNA sequence from clone ... 42 0.023
AC147364_10(AC147364|pid:none) Medicago truncatula clone mth2-68... 42 0.023
BC171608_1(BC171608|pid:none) Danio rerio solute carrier family ... 42 0.023
(P35449) RecName: Full=Probable Na(+)/H(+) antiporter nhx-9; Alt... 42 0.030
T28016(T28016)hypothetical protein ZK822.3 - Caenorhabditis eleg... 42 0.030
AF497835_1(AF497835|pid:none) Caenorhabditis elegans putative Na... 42 0.030
Z73898_7(Z73898|pid:none) Caenorhabditis elegans Cosmid ZK822, c... 42 0.030
AF279671_1(AF279671|pid:none) Mesembryanthemum crystallinum puta... 41 0.051
AY324877_1(AY324877|pid:none) Oryza sativa (japonica cultivar-gr... 40 0.067
AY456096_1(AY456096|pid:none) Medicago sativa Na+/H+ antiporter ... 40 0.087
CP000647_2398(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 40 0.087
AY513732_1(AY513732|pid:none) Medicago sativa Na+/H+ antiporter ... 40 0.087
AP006725_3250(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 40 0.087
AB059562_2(AB059562|pid:none) Aphanothece halophytica psbV and a... 40 0.087
AF497823_1(AF497823|pid:none) Caenorhabditis elegans putative Na... 40 0.11
Z68131_1(Z68131|pid:none) Caenorhabditis elegans Cosmid B0395, c... 40 0.11
CP000269_2011(CP000269|pid:none) Janthinobacterium sp. Marseille... 40 0.11
CU459003_1004(CU459003|pid:none) Magnetospirillum gryphiswaldens... 39 0.15
M23064_1(M23064|pid:none) C.elegans Na+/H+ antiporter mRNA, 3' e... 39 0.19
AE014299_1344(AE014299|pid:none) Shewanella oneidensis MR-1, com... 39 0.25
AJ006916_1(AJ006916|pid:none) Cyprinus carpio NHE1 gene. 39 0.25
CP000139_2663(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 38 0.33
CP001321_1039(CP001321|pid:none) Haemophilus parasuis SH0165, co... 38 0.33
AF497826_1(AF497826|pid:none) Caenorhabditis elegans putative Na... 38 0.43
AF016447_15(AF016447|pid:none) Caenorhabditis elegans cosmid C54... 38 0.43
CP000359_250(CP000359|pid:none) Deinococcus geothermalis DSM 113... 38 0.43
(O16452) RecName: Full=Probable Na(+)/H(+) antiporter nhx-3; Alt... 38 0.43
T18746(T18746;T26021)Na+/H+-exchanging protein - Caenorhabditis ... 37 0.74
AE004439_365(AE004439|pid:none) Pasteurella multocida subsp. mul... 37 0.74
AM910369_1(AM910369|pid:none) Citrus medica partial mRNA for NHX... 37 0.74
AE016830_1476(AE016830|pid:none) Enterococcus faecalis V583, com... 37 0.96
CP001511_960(CP001511|pid:none) Methylobacterium extorquens AM1 ... 36 1.3
CP000830_2127(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 36 1.3
CP001114_1739(CP001114|pid:none) Deinococcus deserti VCD115, com... 36 1.3
CP000270_168(CP000270|pid:none) Burkholderia xenovorans LB400 ch... 36 1.6
CP000851_1056(CP000851|pid:none) Shewanella pealeana ATCC 700345... 36 1.6
AE001826_107(AE001826|pid:none) Deinococcus radiodurans R1 plasm... 36 1.6
AP008229_612(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA... 35 2.1
CP000967_4497(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 35 2.1
CP000379_1579(CP000379|pid:none) Burkholderia cenocepacia AU 105... 35 2.8
CP000633_2657(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 35 2.8
CP000272_1273(CP000272|pid:none) Burkholderia xenovorans LB400 c... 35 2.8
AM747721_824(AM747721|pid:none) Burkholderia cenocepacia J2315 c... 35 2.8
AM181176_5595(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 35 2.8
CP000931_1099(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 35 3.6
CP000469_2988(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 35 3.6
CP000143_2034(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 35 3.6
AM474025_1(AM474025|pid:none) Vitis vinifera contig VV78X124551.... 35 3.6
CP000613_2389(CP000613|pid:none) Rhodospirillum centenum SW, com... 35 3.6
CP000472_3592(CP000472|pid:none) Shewanella piezotolerans WP3, c... 35 3.6
CP001150_1761(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 35 3.6
AE016822_204(AE016822|pid:none) Leifsonia xyli subsp. xyli str. ... 35 3.6
BX005424_3(BX005424|pid:none) Zebrafish DNA sequence from clone ... 34 6.2
CP000949_490(CP000949|pid:none) Pseudomonas putida W619, complet... 34 6.2
CU207366_3273(CU207366|pid:none) Gramella forsetii KT0803 comple... 34 6.2
CP000884_5955(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 33 8.1
CP000661_2327(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 33 8.1
AX647841_1(AX647841|pid:none) Sequence 2033 from Patent EP1270724. 33 8.1
CP000110_1861(CP000110|pid:none) Synechococcus sp. CC9605, compl... 33 8.1
>AC116551_49(AC116551|pid:none) Dictyostelium discoideum chromosome
2 map complement(581327-427576) strain AX4, complete
sequence.
Length = 948
Score = 143 bits (360), Expect = 7e-33
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +2
Query: 2 FETGYSLHKTDFFNNIGPILMFAVFGTIITFLVVGFGIYIVGYFGVSIALSLKDSFAFGS 181
FETGYSLHKTDFFNNIGPILMFAVFGTIITFLVVGFGIYIVGYFGVSIALSLKDSFAFGS
Sbjct: 193 FETGYSLHKTDFFNNIGPILMFAVFGTIITFLVVGFGIYIVGYFGVSIALSLKDSFAFGS 252
Query: 182 IISSTDPVCT 211
IISSTDPVCT
Sbjct: 253 IISSTDPVCT 262
Score = 133 bits (335), Expect = 6e-30
Identities = 80/136 (58%), Positives = 84/136 (61%)
Frame = +2
Query: 89 TFLVVGFGIYIVGYFGVSIALSLKDSFAFGSIISSTDPVCTXXXXISKPMSKXTKQKXRT 268
T LVV F I++ FG+ L+ G S TD ISKPMSK TKQK RT
Sbjct: 500 TLLVVVFTIFV---FGMGTYPLLR---VLGIKTSQTDQ---SLDNISKPMSKQTKQKDRT 550
Query: 269 KLYESFDDKXFKPWFGKRVPPLANEAIEIFEKMVIQSSHDHELDSNPLRFXXXXXXXXXX 448
KLYESFDDK FKPWF KRVPPLANEAIEIFEKMVIQSSHDHELDSNPLRF
Sbjct: 551 KLYESFDDKYFKPWFRKRVPPLANEAIEIFEKMVIQSSHDHELDSNPLRFDDDEEDDDDE 610
Query: 449 XXXXXXXXXXNININT 496
NININT
Sbjct: 611 DLDFDSDLDLNININT 626
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 754,283,090
Number of extensions: 11491043
Number of successful extensions: 39125
Number of sequences better than 10.0: 259
Number of HSP's gapped: 38925
Number of HSP's successfully gapped: 260
Length of query: 264
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 138
Effective length of database: 643,374,430
Effective search space: 88785671340
Effective search space used: 88785671340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |