Contig-U12164-1 |
Contig ID |
Contig-U12164-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
970 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
2015018 |
End point |
2014047 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
3 |
Number of EST |
4 |
Link to clone list |
U12164 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12164-1 (Contig-U12164-1Q) /CSM_Contig/Contig-U12164-1Q.Seq.d (980 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ444862) Dictyostelium discoideum cDNA clone:ddv57m17, 3' ... 815 0.0 2 (BJ441546) Dictyostelium discoideum cDNA clone:ddv47e02, 3' ... 799 0.0 2 (AU052889) Dictyostelium discoideum slug cDNA, clone SLF274. 494 0.0 2 (AU061658) Dictyostelium discoideum slug cDNA, clone SLF274. 519 e-143 1 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 4e-05 15 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 8e-04 16 (AC083825) Homo sapiens chromosome 3 clone RP11-208N8, WORKI... 34 0.040 10 (AF099925) Caenorhabditis elegans cosmid K01A2, complete seq... 52 0.040 1 (AC006765) Caenorhabditis elegans clone Y43H11, *** SEQUENCI... 52 0.040 1 (DW344358) PP_LEc0019B03f Peach shoot Prunus persica cDNA cl... 52 0.040 1 (DW343957) PP_LEc0017F12f Peach shoot Prunus persica cDNA cl... 52 0.040 1 (AX346417) Sequence 1488 from Patent WO0200928. 44 0.043 2 (AC212313) Solanum lycopersicum chromosome 07 clone C07SLm00... 42 0.051 7 (AC210366) Solanum lycopersicum chromosome 7 clone C07HBa030... 42 0.079 6 (AC136572) Rattus norvegicus clone CH230-22E17, *** SEQUENCI... 36 0.085 6 (AC091165) Homo sapiens chromosome 8, clone RP11-366G13, com... 38 0.14 5 (AC011096) Homo sapiens clone RP11-2D21, WORKING DRAFT SEQUE... 40 0.19 5 (AC108782) Mus musculus chromosome 8, clone RP23-350C11, com... 38 0.21 6 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.23 13 (BX784393) Zebrafish DNA sequence from clone DKEY-126N3 in l... 48 0.25 3 (AC165023) Bos taurus clone CH240-167G1, WORKING DRAFT SEQUE... 42 0.44 8 (AC007625) Genomic sequence of Homo sapiens clone 2314F2 fro... 36 0.45 7 (AC072063) Homo sapiens BAC clone RP11-697B15 from 7, comple... 38 0.53 4 (CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 36 0.55 12 (CU855866) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.61 6 (CT025874) Zebrafish DNA sequence from clone DKEY-170I22 in ... 48 0.63 1 (CR812957) Zebrafish DNA sequence from clone DKEY-41L5 in li... 48 0.63 1 (CR382298) Zebrafish DNA sequence from clone DKEY-25J19 in l... 48 0.63 1 (AC133728) Rattus norvegicus clone CH230-181L15, WORKING DRA... 48 0.63 1 (AC099250) Rattus norvegicus clone CH230-167E1, WORKING DRAF... 48 0.63 1 (CT025898) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.63 1 (AP007931) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.63 1 (AC167793) Bos taurus clone CH240-216G5, WORKING DRAFT SEQUE... 48 0.63 1 (AZ193664) SP_1023_B2_C12_SP6E Strongylocentrotus purpuratus... 48 0.63 1 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.64 16 (AC157536) Medicago truncatula clone mth2-123a2, complete se... 38 0.65 5 (DV778670) Hw_Fat_9_D10 Bos taurus CF-24-HW fat cDNA library... 34 0.66 3 (AE017263) Mesoplasma florum L1 complete genome. 32 0.70 18 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 0.71 7 (EI738538) CHORI5143E20TF BAC library from the primary breas... 40 0.74 3 (EJ832991) 1093017587572 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.75 3 (DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 44 1.00 3 (AC017065) Homo sapiens chromosome 8 clone RP11-366G13, WORK... 38 1.1 4 (AC120327) Rattus norvegicus clone CH230-61A15, *** SEQUENCI... 38 1.1 7 (EJ328201) 1092963408069 Global-Ocean-Sampling_GS-28-01-01-1... 34 1.3 3 (AL161631) Human DNA sequence from clone RP11-70K10 on chrom... 40 1.3 4 (AC192094) Taeniopygia guttata chromosome UNK clone TG_Ba-29... 40 1.3 5 (AC177379) Strongylocentrotus purpuratus clone R3-1031O21, W... 32 1.3 2 (M64570) Vaccinia virus cDNA of the 5' end of the 5' polyade... 42 1.4 2 (BD061520) Genome DNA of symbiotic bacteria of aphid. 38 1.4 15 (AR409405) Sequence 1 from patent US 6632935. 38 1.4 15 (BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 38 1.4 15 (DQ784707) Kaniska canace voucher jshao2005042 16S ribosomal... 32 1.4 3 (AC118148) Rattus norvegicus clone CH230-382K14, *** SEQUENC... 42 1.4 3 (M64569) Vaccinia virus cDNA of the 5' end of the 5' polyade... 42 1.4 2 (AC142506) Medicago truncatula chromosome 8 clone mth2-25k8,... 40 1.4 4 (AC180286) Strongylocentrotus purpuratus clone R3-3121K19, W... 36 1.6 5 (AC024106) Homo sapiens 3 BAC RP11-33K7 (Roswell Park Cancer... 36 1.6 6 (EJ702395) 1092956040356 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.7 2 (ER451209) 1092963850305 Global-Ocean-Sampling_GS-35-01-01-1... 34 1.7 2 (EJ719664) 1092959443014 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.7 2 (EJ620507) 1092963056053 Global-Ocean-Sampling_GS-29-01-01-1... 34 1.7 2 (EJ633690) 1092970301452 Global-Ocean-Sampling_GS-29-01-01-1... 34 1.7 2 (DR392367) USDA-FP_152299 Adult Alate Aphis gossypii (WHAGA)... 36 1.7 2 (AL844509) Plasmodium falciparum chromosome 13. 46 1.7 17 (DR389810) USDA-FP_149630 Adult Alate Aphis gossypii (WHAGA)... 36 1.8 2 (FH481989) CHO_OF4848xi02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 1.9 3 (AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 2.0 11 (EJ677283) 1092955094231 Global-Ocean-Sampling_GS-30-02-01-1... 38 2.0 2 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 2.0 11 (CP000743) Methanococcus aeolicus Nankai-3, complete genome. 34 2.1 18 (M64589) Vaccinia virus XbaI-site-bounded symmetrical nucleo... 42 2.1 2 (CR788308) Zebrafish DNA sequence from clone DKEY-192K19 in ... 40 2.1 7 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 2.1 11 (AC024366) Homo sapiens chromosome 6 clone RP11-5O15 map 6, ... 38 2.2 5 (BZ206624) CH230-487O8.TJ CHORI-230 Segment 2 Rattus norvegi... 32 2.2 3 (AC169516) Medicago truncatula chromosome 7 BAC clone mth2-8... 38 2.3 5 (EK412442) 1095505203738 Global-Ocean-Sampling_GS-31-01-01-1... 36 2.3 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 2.3 15 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 2.3 9 (M14004) Vaccinia virus telomere. 42 2.4 2 (CR382297) Zebrafish DNA sequence from clone CH211-195D9 in ... 40 2.4 3 (AC010577) Drosophila melanogaster clone BACR22J20, complete... 32 2.4 8 (M29271) Vaccinia virus concatemer junction. 42 2.5 2 (BX005084) Mouse DNA sequence from clone RP24-468M3 on chrom... 46 2.5 1 (AL672015) Mouse DNA sequence from clone RP23-154O12 on chro... 46 2.5 1 (AC126036) Mus musculus BAC clone RP24-184E20 from chromosom... 46 2.5 1 (AC113464) Mus musculus chromosome 8, clone RP23-183P1, comp... 46 2.5 1 (AC193566) Rhesus Macaque BAC CH250-236H10 () complete sequ... 46 2.5 1 (AP006207) Homo sapiens genomic DNA, chromosome 8, clone:RP1... 46 2.5 1 (AC211781) Homo sapiens FOSMID clone ABC9-44035000P12 from c... 46 2.5 1 (AC105419) Homo sapiens BAC clone RP11-502O9 from 2, complet... 46 2.5 1 (AC091050) Homo sapiens chromosome 8, clone RP11-242F4, comp... 46 2.5 1 (AC079193) Homo sapiens chromosome 8, clone RP11-468H14, com... 46 2.5 1 (AB020859) Homo sapiens genomic DNA of 8p21.3-p22 anti-oncog... 46 2.5 1 (AC160541) Mus musculus chromosome 1 clone RP23-144F15 map 1... 46 2.5 1 (AC109089) Rattus norvegicus clone CH230-202E3, *** SEQUENCI... 46 2.5 1 (AC097391) Rattus norvegicus clone CH230-9E23, *** SEQUENCIN... 46 2.5 1 (AC094280) Rattus norvegicus clone CH230-3G22, WORKING DRAFT... 46 2.5 1 (AC079008) Homo sapiens chromosome 4 clone RP11-163O21 map 4... 46 2.5 1
>(BJ444862) Dictyostelium discoideum cDNA clone:ddv57m17, 3' end, single read. Length = 618
Score = 815 bits (411), Expect(2) = 0.0 Identities = 415/417 (99%) Strand = Plus / Minus
Query: 273 acttgattttcccaaataatcatgaaaatccttcaagattattgaaaacttgtatccaag 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 acttgattttcccaaataatcatgaaaatccttcaagattattgaaaacttgtatccaag 559
Query: 333 agaattgtcatttattaatgtatattatagccattcaaagtcaacgtaatgatactttaa 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 agaattgtcatttattaatgtatattatagccattcaaagtcaacgtaatgatactttaa 499
Query: 393 atctttctgaattcattcaagatgtaattaatattacctttagaaataatcatgaatatg 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 atctttctgaattcattcaagatgtaattaatattacctttagaaataatcatgaatatg 439
Query: 453 aactttggttatcttggatgttggtaattaaattaattgaaaatcaatctcaatcaagtt 512 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 438 aactttggttatcttggatgttggtaattaaattaattgaaaatcaatntcaatcaagtt 379
Query: 513 ttaaaaataaacatttaattcaatctatttcagattttaaagattcaatatcatcatatt 572 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 378 ttaaaaataaacatttaattcaatntatttcagattttaaagattcaatatcatcatatt 319
Query: 573 ttggaacagctggtaataagataacatcattattttcaaataaacaaaagacaataatgg 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ttggaacagctggtaataagataacatcattattttcaaataaacaaaagacaataatgg 259
Query: 633 tacagactcatttagcagcaagagcatgtttattatatttacagagaatattggttc 689 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tacagactcatttagcagcaagagcatgtttattatatttacagagaatattggttc 202
Score = 327 bits (165), Expect(2) = 0.0 Identities = 171/174 (98%) Strand = Plus / Minus
Query: 717 caatcaaagatgttcaattattaaatcaaatcactgatagtctcgttgatttgaaaaaga 776 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 174 caatcaaagatgttcaattattaaatcaaatcactgatagtntcgttgatttgaaaaaga 115
Query: 777 aatcaaccaataatatctattcaccatatcaagatttctttaatgaatcagaaaactttt 836 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 114 aatcaaccaataatatntattcaccatatcaagatttntttaatgaatcagaaaactttt 55
Query: 837 tatcaccattggtagaatttgaattcttttcaaactctgtcattagaactcttg 890 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54 tatcaccattggtagaatttgaattcttttcaaactctgtcattagaactcttg 1
Score = 46.1 bits (23), Expect(2) = 0.43 Identities = 23/23 (100%) Strand = Plus / Minus
Query: 240 acttgattttcccaaataatcat 262 ||||||||||||||||||||||| Sbjct: 618 acttgattttcccaaataatcat 596
Score = 26.3 bits (13), Expect(2) = 0.43 Identities = 13/13 (100%) Strand = Plus / Minus
Query: 286 aaataatcatgaa 298 ||||||||||||| Sbjct: 455 aaataatcatgaa 443
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,299,043,924 Number of extensions: 87680651 Number of successful extensions: 7911786 Number of sequences better than 10.0: 299 Length of query: 980 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 956 Effective length of database: 97,308,875,965 Effective search space: 93027285422540 Effective search space used: 93027285422540 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
2 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |