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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12140-1
Contig ID Contig-U12140-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12140-1 (Contig-U12140-1Q) /CSM_Contig/Contig-U12140-1Q.Seq.d
AAAAAAAAATTTTAATATCACACCACTACTATTACAACTTGTTATCATTA
CCTATTTACATTTTCCTCCTTATTTTATTTATTTTTATACAAATAATTTA
AAAATACACACACACACAACATAAATAATTAATAATAATAATAATTAAAA
ATGGTTACAGAATTAGTTGATAAAGCCACAAATGAATTATTAATTCAAAC
CGATTGGACAACAGTTTTACAAATTAGTGATATCTTAAATAGAGATCCAA
TTCATGCAAGAGGAGTTGTTAGACAGGTTACGAAAAAGTTAAAAGATAGA
TCAAGAGTTATTTTATTAGCTTTGGAGTTAGCAGATTCTTTACTCCAAAA
TTGTCATTGCACTCATGTCTATTTTGCAGAGAGAACTTTTCAAACTGAAT
TATGTAGATTAATTATGAATAAAAAGACAAAATTGAATGTTAAAGAAAAA
ACATTAGAAATTGTAGAGAGTTGGGGAAATGCAT----------GAAATG
CATTCCAAGCTAGACACGATGTACCAGGATTTTATGAAACTTATTCATTT
ATTAAACGTTCTGGTTACAAATTCCCACCAAAACCAAGCGATGCACCAAT
TTTGAATTTTAATAATTCACCAGCAAAGAGAACAGTTAGTACTACCATCT
TAACTAATAATAGTCATTCAACTACTCCACCACAAGCAAATGTTCCATCA
TTTAATAATGTATCAAGTGTTGGCTCCAACAACGCTGGTGGTGGTGGTTC
ATCCTCTCAACCAATAAAGAATCAAGAAATCTCTTCAATTAAAGGTTCAA
CTTCTGTATTCAATGAAATGATTTCCTTCTTGAATGTTGAAGATGAAGAT
CCACAAGAAAATGATTTAATCAAAGAGTTGTTTGAAACTTGTAAACAATC
CCAAATTAGAGTAAAAGAAATGATTGAATCTGGTTCAACCAATGAAAGAG
ATTTAAATGTTTTATTGAAATTAAATGATGAAATTAATAATGCACTAAAT
GATCATGAGGCTTGTATAAAAAGAAGAAGAGCATTCGTTGAAAATGGATA
TAAGCCAGTCCCACCACCACAACAACAACAACAACAACAACAACAACAAC
AACCAATGATGAATCAAATGAATAATTTTTCAGCACCAACATACTCTCAA
TTTACAAACTACGCCCAACCAAACCAACAACCATACAATAATAACTATGG
AGGAATGAACCAATCAAATATGTATCCAAATAATAATATGAGTGGTAAAT
CATCTCTTATTTAAACACATTCAAAGAATAAAAATATAAAAAACAAAAAA
AAGTTAAACAAAATGTAATATTGAAATAAAAAAGAAAAAAAATATAAAAA
AAAATAAAAAAAAATAAAACTTTTTTTTAAAATCATTTTATAAGATNTAA
AANTAAAAAAAAA
Gap gap included
Contig length 1403
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3685832
End point 3687237
Strand (PLUS/MINUS) PLUS
Number of clones 9
Number of EST 11
Link to clone list U12140
List of clone(s) 

est1=SFD529F,1,485
est2=SLC736F,35,472
est3=SFI145Z,486,1265
est4=SFD379Z,768,1265
est5=SLC736Z,779,1278
est6=CHK229Z,787,1189
est7=CFF380Z,817,1387
est8=SLG190E,952,1278
est9=SLG224E,952,1278
est10=CFG458F,1275,1405
est11=CFG458Z,1282,1388
Translated Amino Acid sequence 
kkkf*yhtttittcyhylftfsslfylflyk*fknththninn*****LKMVTELVDKAT
NELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRSRVILLALELADSLLQNCHC
THVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNA---

---NAFQARHDVPGFYETYSFIKRSGYKFPPKPSDAPILNFNNSPAKRTVSTTILTNNSH
STTPPQANVPSFNNVSSVGSNNAGGGGSSSQPIKNQEISSIKGSTSVFNEMISFLNVEDE
DPQENDLIKELFETCKQSQIRVKEMIESGSTNERDLNVLLKLNDEINNALNDHEACIKRR
RAFVENGYKPVPPPQQQQQQQQQQQPMMNQMNNFSAPTYSQFTNYAQPNQQPYNNNYGGM
NQSNMYPNNNMSGKSSLI*thsknkniknkkklnkm*y*nkkekkykkk*kkiklffkii
l*dxkxkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkf*yhtttittcyhylftfsslfylflyk*fknththninn*****LKMVTELVDKAT
NELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRSRVILLALELADSLLQNCHC
THVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNA---

---emhskldtmyqdfmklihllnvlvtnshqnqamhqf*iliihqqreqlvlps*liiv
iqllhhkqmfhhlimyqvlapttlvvvvhplnq*rikkslqlkvqllysmk*fps*mlkm
kihkkmi*sksclklvnnpkle*kk*lnlvqpmkei*mfy*n*mmklimh*mimrlv*ke
eehslkmdisqshhhnnnnnnnnnnnq**ik*iifqhqhtlnlqttpnqtnnhtiitmee
*tnqiciqiii*vvnhllfkhiqriki*ktkks*tkcnieikkkknikknkkk*nfflks
fykx*x*kk

Frame B:
kknfnitplllqlviitylhfppyfiyfytnnlkihthtt*iinnnnn*kwlqn*likpq
mny*fkpigqqfyklvis*ieiqfmqeelldrlrks*kidqelfy*lws*qilyskivia
lmsilqrelfklnyvd*l*ikrqn*mlkkkh*kl*rvgemh---

---kcips*trctril*nlfiy*tfwlqiptktkrctnfef**ftskens*yyhln***s
fnysttskcsii**cikcwlqqrwwwwfilstnkesrnlfn*rfnfciq*ndfllec*r*
rstrk*fnqrvv*nl*tipn*skrnd*iwfnq*krfkcfieik**n**ctk*s*glykkk
ksir*kwi*aspttttttttttttttndesne*ffstnilsiyklrptkpttiq**lwrn
epikyvsk**yew*iisylntfke*kykkqkkvkqnvilk*krkki*kkikknktff*nh
firxkxkkk

Frame C:
kkilishhyyynllslpiyifllilfifiqii*kythtqhk*liiiiikngyris**shk
*iinsnrldnsftn**ylk*rsnsckrsc*tgyekvkr*iksyfisfgvsrfftpklslh
sclfcrenfsn*im*inye*kdkiec*rknirncrelgkc---

---NAFQARHDVPGFYETYSFIKRSGYKFPPKPSDAPILNFNNSPAKRTVSTTILTNNSH
STTPPQANVPSFNNVSSVGSNNAGGGGSSSQPIKNQEISSIKGSTSVFNEMISFLNVEDE
DPQENDLIKELFETCKQSQIRVKEMIESGSTNERDLNVLLKLNDEINNALNDHEACIKRR
RAFVENGYKPVPPPQQQQQQQQQQQPMMNQMNNFSAPTYSQFTNYAQPNQQPYNNNYGGM
NQSNMYPNNNMSGKSSLI*thsknkniknkkklnkm*y*nkkekkykkk*kkiklffkii
l*dxkxkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12140-1 (Contig-U12140-1Q)
/CSM_Contig/Contig-U12140-1Q.Seq.d
         (1413 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12140-1 (Contig-U12140-1Q) /CSM_Contig/Conti...  1756  0.0
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11482-1 (Contig-U11482-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U11831-1 (Contig-U11831-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U10762-1 (Contig-U10762-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U10711-1 (Contig-U10711-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U08726-1 (Contig-U08726-1Q) /CSM_Contig/Conti...    36  0.10
Contig-U14049-1 (Contig-U14049-1Q) /CSM_Contig/Conti...    34  0.40
Contig-U13171-1 (Contig-U13171-1Q) /CSM_Contig/Conti...    34  0.40

>Contig-U12140-1 (Contig-U12140-1Q) /CSM_Contig/Contig-U12140-1Q.Seq.d
          Length = 1413

 Score = 1756 bits (886), Expect = 0.0
 Identities = 916/916 (100%)
 Strand = Plus / Plus

                                                                        
Query: 153  ggttacagaattagttgataaagccacaaatgaattattaattcaaaccgattggacaac 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153  ggttacagaattagttgataaagccacaaatgaattattaattcaaaccgattggacaac 212

                                                                        
Query: 213  agttttacaaattagtgatatcttaaatagagatccaattcatgcaagaggagttgttag 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213  agttttacaaattagtgatatcttaaatagagatccaattcatgcaagaggagttgttag 272

                                                                        
Query: 273  acaggttacgaaaaagttaaaagatagatcaagagttattttattagctttggagttagc 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273  acaggttacgaaaaagttaaaagatagatcaagagttattttattagctttggagttagc 332

                                                                        
Query: 333  agattctttactccaaaattgtcattgcactcatgtctattttgcagagagaacttttca 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333  agattctttactccaaaattgtcattgcactcatgtctattttgcagagagaacttttca 392

                                                                        
Query: 393  aactgaattatgtagattaattatgaataaaaagacaaaattgaatgttaaagaaaaaac 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393  aactgaattatgtagattaattatgaataaaaagacaaaattgaatgttaaagaaaaaac 452

                                                                        
Query: 453  attagaaattgtagagagttggggaaatgcatnnnnnnnnnngaaatgcattccaagcta 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453  attagaaattgtagagagttggggaaatgcatnnnnnnnnnngaaatgcattccaagcta 512

                                                                        
Query: 513  gacacgatgtaccaggattttatgaaacttattcatttattaaacgttctggttacaaat 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513  gacacgatgtaccaggattttatgaaacttattcatttattaaacgttctggttacaaat 572

                                                                        
Query: 573  tcccaccaaaaccaagcgatgcaccaattttgaattttaataattcaccagcaaagagaa 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573  tcccaccaaaaccaagcgatgcaccaattttgaattttaataattcaccagcaaagagaa 632

                                                                        
Query: 633  cagttagtactaccatcttaactaataatagtcattcaactactccaccacaagcaaatg 692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633  cagttagtactaccatcttaactaataatagtcattcaactactccaccacaagcaaatg 692

                                                                        
Query: 693  ttccatcatttaataatgtatcaagtgttggctccaacaacgctggtggtggtggttcat 752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693  ttccatcatttaataatgtatcaagtgttggctccaacaacgctggtggtggtggttcat 752

                                                                        
Query: 753  cctctcaaccaataaagaatcaagaaatctcttcaattaaaggttcaacttctgtattca 812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  cctctcaaccaataaagaatcaagaaatctcttcaattaaaggttcaacttctgtattca 812

                                                                        
Query: 813  atgaaatgatttccttcttgaatgttgaagatgaagatccacaagaaaatgatttaatca 872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  atgaaatgatttccttcttgaatgttgaagatgaagatccacaagaaaatgatttaatca 872

                                                                        
Query: 873  aagagttgtttgaaacttgtaaacaatcccaaattagagtaaaagaaatgattgaatctg 932
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  aagagttgtttgaaacttgtaaacaatcccaaattagagtaaaagaaatgattgaatctg 932

                                                                        
Query: 933  gttcaaccaatgaaagagatttaaatgttttattgaaattaaatgatgaaattaataatg 992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  gttcaaccaatgaaagagatttaaatgttttattgaaattaaatgatgaaattaataatg 992

                                                                        
Query: 993  cactaaatgatcatgaggcttgtataaaaagaagaagagcattcgttgaaaatggatata 1052
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  cactaaatgatcatgaggcttgtataaaaagaagaagagcattcgttgaaaatggatata 1052

                            
Query: 1053 agccagtcccaccacc 1068
            ||||||||||||||||
Sbjct: 1053 agccagtcccaccacc 1068


 Score =  349 bits (176), Expect = 5e-96
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1104 caatgatgaatcaaatgaataatttttcagcaccaacatactctcaatttacaaactacg 1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 caatgatgaatcaaatgaataatttttcagcaccaacatactctcaatttacaaactacg 1163

                                                                        
Query: 1164 cccaaccaaaccaacaaccatacaataataactatggaggaatgaaccaatcaaatatgt 1223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 cccaaccaaaccaacaaccatacaataataactatggaggaatgaaccaatcaaatatgt 1223

                                                                    
Query: 1224 atccaaataataatatgagtggtaaatcatctcttatttaaacacattcaaagaat 1279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 atccaaataataatatgagtggtaaatcatctcttatttaaacacattcaaagaat 1279


 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 10 ttttaatatcacaccactactattacaactt 40
          |||||||||||||||||||||||||||||||
Sbjct: 10 ttttaatatcacaccactactattacaactt 40


>Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Contig-U10976-1Q.Seq.d
          Length = 4198

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 961  tttattgaaattaaatgatgaaa 983
            |||||||||||||||||||||||
Sbjct: 3102 tttattgaaattaaatgatgaaa 3124


 Score = 30.2 bits (15), Expect = 6.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 969  aattaaatgatgaaa 983
            |||||||||||||||
Sbjct: 3428 aattaaatgatgaaa 3442


 Score = 30.2 bits (15), Expect = 6.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 969  aattaaatgatgaaa 983
            |||||||||||||||
Sbjct: 1917 aattaaatgatgaaa 1931


>Contig-U11482-1 (Contig-U11482-1Q) /CSM_Contig/Contig-U11482-1Q.Seq.d
          Length = 885

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1175 caacaaccatacaataataactat 1198
            ||||||| ||||||||||||||||
Sbjct: 738  caacaacaatacaataataactat 761


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,906
Number of Sequences: 6905
Number of extensions: 21906
Number of successful extensions: 2690
Number of sequences better than 10.0: 219
length of query: 1413
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1397
effective length of database: 5,564,391
effective search space: 7773454227
effective search space used: 7773454227
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12140-1 (Contig-U12140-1Q) /CSM_Contig/Contig-U12140-1Q.Seq.d
         (1413 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ402569) Dictyostelium discoideum cDNA clone:dds17i11, 3' ...  1136   0.0    4
(BJ388191) Dictyostelium discoideum cDNA clone:dds8i07, 5' e...   658   0.0    2
(AU061044) Dictyostelium discoideum slug cDNA, clone SLC736.      626   e-175  1
(BJ372282) Dictyostelium discoideum cDNA clone:ddc11p19, 3' ...   335   e-151  2
(AU039706) Dictyostelium discoideum slug cDNA, clone SLG224.      335   3e-87  1
(AU039690) Dictyostelium discoideum slug cDNA, clone SLG190.      335   3e-87  1
(AU034354) Dictyostelium discoideum slug cDNA, clone SLC736.      335   3e-87  1
(BJ399895) Dictyostelium discoideum cDNA clone:dds7n19, 3' e...   317   6e-82  1
(BJ381692) Dictyostelium discoideum cDNA clone:ddc42i08, 3' ...   188   4e-43  1
(AF057019) Dictyostelium discoideum interaptin (abpD) gene, ...    46   0.070  4
(ER487322) 1093015307007 Global-Ocean-Sampling_GS-35-01-01-1...    50   0.23   1
(EK404265) 1095469558812 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.23   1
(EJ366899) 1092963708712 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.23   1
(EJ344105) 1092963534904 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.23   1
(EJ147382) 1092343727160 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.23   1
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   0.24   11
(BJ404418) Dictyostelium discoideum cDNA clone:dds28o12, 3' ...    46   0.27   2
(BJ345523) Dictyostelium discoideum cDNA clone:dda23p20, 3' ...    46   0.28   2
(BJ403298) Dictyostelium discoideum cDNA clone:dds24n13, 3' ...    46   0.32   2
(EJ704065) 1092956046476 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.33   2
(EJ648764) 1092953003043 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.33   2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.49   2
(AB022210) Arabidopsis thaliana genomic DNA, chromosome 5, T...    48   0.92   1
(AC099520) Homo sapiens chromosome 5 clone RP11-6N13, comple...    48   0.92   1
(AC055808) Homo sapiens chromosome 3 clone RP11-275K4 map 3,...    48   0.92   1
(AC012288) Homo sapiens clone RP11-6N13, WORKING DRAFT SEQUE...    48   0.92   1
(EK289241) 1095462324248 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.92   1
(EW854985) G894P5117FI1.T0 Ixodes scapularis Pooled Non-infe...    48   0.92   1
(AL400973) T3 end of clone AS0AA025A01 of library AS0AA from...    46   1.3    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   1.4    11
(AC218340) Bos taurus clone CH240-287E14, WORKING DRAFT SEQU...    32   1.8    2
(AC218313) Bos taurus clone CH240-287I15, WORKING DRAFT SEQU...    32   1.9    2
(CC555506) CH240_462F3.T7 CHORI-240 Bos taurus genomic clone...    32   2.4    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   2.7    13
(AC123574) Medicago truncatula chromosome 6 clone mth1-7g13,...    40   3.6    6
(BV008649) MASC_STS17312 Arabidopsis thaliana (Landsberg ere...    46   3.6    1
(BV008646) MASC_STS17315 Arabidopsis thaliana (Lezoux/Puy-de...    46   3.6    1
(BV008643) MASC_STS17316 Arabidopsis thaliana (Cap Verde Isl...    46   3.6    1
(BV008641) MASC_STS17311 Arabidopsis thaliana (Konchezero ac...    46   3.6    1
(BV008640) MASC_STS17318 Arabidopsis thaliana (Eifel-2 acces...    46   3.6    1
(BV008638) MASC_STS17317 Arabidopsis thaliana (C24 accession...    46   3.6    1
(BV008375) MASC_STS17310 Arabidopsis thaliana (Niederzenz-0 ...    46   3.6    1
(BV008374) MASC_STS17309 Arabidopsis thaliana (Gueckingen-0 ...    46   3.6    1
(AL844531) Mouse DNA sequence from clone RP23-211J18 on chro...    46   3.6    1
(U78721) Arabidopsis thaliana chromosome 2 clone T1B8 map TE...    46   3.6    1
(AK229389) Arabidopsis thaliana mRNA for putative SF16 prote...    46   3.6    1
(AJ276759) Arabidopsis thaliana partial mRNA, clone DiDi 18G...    46   3.6    1
(AC002341) Arabidopsis thaliana chromosome 2 clone T14G11 ma...    46   3.6    1
(CQ574877) Sequence 2635 from Patent WO0171042.                    46   3.6    1
(AC121066) Oryctolagus cuniculus strain New Zealand White cl...    46   3.6    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    46   3.6    1
(AC097725) Drosophila melanogaster 3L BAC RP98-48E19 (Roswel...    46   3.6    1
(AC020633) Homo sapiens 3 BAC RP11-65E22 (Roswell Park Cance...    46   3.6    1
(AC113179) Mus musculus clone RP23-370G4, WORKING DRAFT SEQU...    46   3.6    1
(AL359635) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.6    1
(AC019603) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   3.6    1
(AC006489) Drosophila melanogaster strain y chromosome 3 clo...    46   3.6    1
(AQ962017) LERGC85TF LERG Arabidopsis thaliana genomic clone...    46   3.6    1
(EJ009159) 1095403568449 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.6    1
(EI346058) GM_WBc0091O09.r GM_WBc Glycine max genomic clone ...    46   3.6    1
(EI105584) ChBa_A_002D05.y03 Chesapeake Bay viral metagenome...    46   3.6    1
(EL174744) EB3RODY01B3XMW 8-day Arabidopsis seedlings, aeria...    46   3.6    1
(EL035891) EBENXNS02I423Z 8-day Arabidopsis seedlings, aeria...    46   3.6    1
(DR380887) 11083094 CERES-148 Arabidopsis thaliana cDNA clon...    46   3.6    1
(CK107459) UB58DPB12.5pR Populus active cambium cDNA library...    46   3.6    1
(BU823926) UB58DPB12 Populus tremula cambium cDNA library Po...    46   3.6    1
(BP792801) Arabidopsis thaliana cDNA clone:RAFL07-53-H11, 3'...    46   3.6    1
(FG675646) G1143P329FA5.T0 Anolis carolinensis pooled normal...    46   3.6    1
(FE240902) CAPG6076.fwd CAPG Naegleria gruberi amoeba stage ...    46   3.6    1
(FD768763) Zfi02b_55_D06_C017.b1 cDNA library derived from f...    46   3.6    1
(AE017197) Rickettsia typhi str. Wilmington complete genome.       46   3.6    1
(AC168499) Strongylocentrotus purpuratus clone R3-3117D2, WO...    44   3.7    4
(EK361153) 1095468984584 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.0    2
(AM460510) Vitis vinifera contig VV78X032722.10, whole genom...    36   4.2    3
(CR354562) Zebrafish DNA sequence from clone DKEY-25B23 in l...    40   4.3    8
(CT464932) Sus scrofa genomic clone CH242-498I8, genomic sur...    36   4.3    2
(AC168709) Strongylocentrotus purpuratus clone R3-3011H9, WO...    36   5.0    5
(AC174821) Cavia porcellus clone CH234-215G14, WORKING DRAFT...    36   5.4    6
(ET706765) CHO_OF429xl10f1.ab1 CHO_OF Nicotiana tabacum geno...    38   5.9    3
(AC010889) Homo sapiens BAC clone RP11-424G14 from Y, comple...    32   6.7    2
(AC133469) Homo sapiens clone RP11-733H20, WORKING DRAFT SEQ...    32   6.7    2
(AC146231) Pan troglodytes BAC clone CH251-228G2 from Y, com...    32   6.7    2
(BS000542) Pan troglodytes chromosome Y clone:PTB-183L08, co...    32   6.7    2
(BS000546) Pan troglodytes chromosome Y clone:PTB-228J20, co...    32   6.8    2
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   6.9    9
(AC180785) Strongylocentrotus purpuratus clone R3-3071N16, W...    36   7.5    7
(DE283927) Bombyx mori genomic DNA, BAC clone:BES_001_M12.         34   7.5    3
(FH215164) CHO_OF3374xe22f1.ab1 CHO_OF3 Nicotiana tabacum ge...    38   8.6    3
(FH331617) CHO_OF4582xk13f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   9.0    2
(FH360272) CHO_OF4688xl12f1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   9.1    3
(AC152593) Bos taurus clone CH240-5M1, WORKING DRAFT SEQUENC...    34   9.2    8
(CE211894) tigr-gss-dog-17000372749685 Dog Library Canis lup...    34   9.5    2

>(BJ402569) Dictyostelium discoideum cDNA clone:dds17i11, 3' end,
            single read.
          Length = 780

 Score = 1136 bits (573), Expect(4) = 0.0
 Identities = 573/573 (100%)
 Strand = Plus / Minus


Query: 496  aaatgcattccaagctagacacgatgtaccaggattttatgaaacttattcatttattaa 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779  aaatgcattccaagctagacacgatgtaccaggattttatgaaacttattcatttattaa 720


Query: 556  acgttctggttacaaattcccaccaaaaccaagcgatgcaccaattttgaattttaataa 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  acgttctggttacaaattcccaccaaaaccaagcgatgcaccaattttgaattttaataa 660


Query: 616  ttcaccagcaaagagaacagttagtactaccatcttaactaataatagtcattcaactac 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659  ttcaccagcaaagagaacagttagtactaccatcttaactaataatagtcattcaactac 600


Query: 676  tccaccacaagcaaatgttccatcatttaataatgtatcaagtgttggctccaacaacgc 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599  tccaccacaagcaaatgttccatcatttaataatgtatcaagtgttggctccaacaacgc 540


Query: 736  tggtggtggtggttcatcctctcaaccaataaagaatcaagaaatctcttcaattaaagg 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539  tggtggtggtggttcatcctctcaaccaataaagaatcaagaaatctcttcaattaaagg 480


Query: 796  ttcaacttctgtattcaatgaaatgatttccttcttgaatgttgaagatgaagatccaca 855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479  ttcaacttctgtattcaatgaaatgatttccttcttgaatgttgaagatgaagatccaca 420


Query: 856  agaaaatgatttaatcaaagagttgtttgaaacttgtaaacaatcccaaattagagtaaa 915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419  agaaaatgatttaatcaaagagttgtttgaaacttgtaaacaatcccaaattagagtaaa 360


Query: 916  agaaatgattgaatctggttcaaccaatgaaagagatttaaatgttttattgaaattaaa 975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359  agaaatgattgaatctggttcaaccaatgaaagagatttaaatgttttattgaaattaaa 300


Query: 976  tgatgaaattaataatgcactaaatgatcatgaggcttgtataaaaagaagaagagcatt 1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299  tgatgaaattaataatgcactaaatgatcatgaggcttgtataaaaagaagaagagcatt 240


Query: 1036 cgttgaaaatggatataagccagtcccaccacc 1068
            |||||||||||||||||||||||||||||||||
Sbjct: 239  cgttgaaaatggatataagccagtcccaccacc 207

 Score =  268 bits (135), Expect(4) = 0.0
 Identities = 135/135 (100%)
 Strand = Plus / Minus


Query: 1104 caatgatgaatcaaatgaataatttttcagcaccaacatactctcaatttacaaactacg 1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171  caatgatgaatcaaatgaataatttttcagcaccaacatactctcaatttacaaactacg 112


Query: 1164 cccaaccaaaccaacaaccatacaataataactatggaggaatgaaccaatcaaatatgt 1223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111  cccaaccaaaccaacaaccatacaataataactatggaggaatgaaccaatcaaatatgt 52


Query: 1224 atccaaataataata 1238
            |||||||||||||||
Sbjct: 51   atccaaataataata 37

 Score = 30.2 bits (15), Expect(4) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 1258 tatttaaacacattc 1272
            |||||||||||||||
Sbjct: 20   tatttaaacacattc 6

 Score = 28.2 bits (14), Expect(4) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 1244 ggtaaatcatctct 1257
            ||||||||||||||
Sbjct: 33   ggtaaatcatctct 20

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,467,037,619
Number of extensions: 94609244
Number of successful extensions: 8960097
Number of sequences better than 10.0: 92
Length of query: 1413
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1389
Effective length of database: 97,308,875,965
Effective search space: 135162028715385
Effective search space used: 135162028715385
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12140-1 (Contig-U12140-1Q) /CSM_Contig/Contig-U12140-1Q.Seq.d
         (1413 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GH3) RecName: Full=Target of Myb protein 1; AltName: Full=Dd...   326   1e-87
AP003619_13(AP003619|pid:none) Oryza sativa Japonica Group genom...    67   2e-17
AK066024_1(AK066024|pid:none) Oryza sativa Japonica Group cDNA c...    66   3e-16
BC142312_1(BC142312|pid:none) Bos taurus target of myb1-like 2 (...    60   6e-15
(Q6ZVM7) RecName: Full=TOM1-like protein 2; AltName: Full=Target...    60   9e-15
AF467887_1(AF467887|pid:none) Mus musculus target of myb1-like p...    60   2e-14
(Q8R4H1) RecName: Full=TOM1-like protein 2; AltName: Full=Target...    60   2e-14
BC127266_1(BC127266|pid:none) Mus musculus target of myb1-like 2...    60   2e-14
AL596090_5(AL596090|pid:none) Mouse DNA sequence from clone RP23...    60   2e-14
AK054531_1(AK054531|pid:none) Mus musculus 2 days pregnant adult...    60   2e-14
AL162351_3(AL162351|pid:none) Arabidopsis thaliana DNA chromosom...    57   3e-14
AC012562_26(AC012562|pid:none) Arabidopsis thaliana chromosome 3...    61   3e-14
(Q68FJ8) RecName: Full=TOM1-like protein 2; AltName: Full=Target...    59   4e-14
AJ495787_1(AJ495787|pid:none) Oryza sativa (japonica cultivar-gr...    56   8e-14
BT064843_1(BT064843|pid:none) Zea mays full-length cDNA clone ZM...    57   1e-13
EF085073_1(EF085073|pid:none) Picea sitchensis clone WS0271_J07 ...    57   2e-13
AM427887_1(AM427887|pid:none) Vitis vinifera contig VV78X091037....    54   3e-13
AC149809_28(AC149809|pid:none) Medicago truncatula clone mth2-15...    55   1e-12
BT061366_1(BT061366|pid:none) Zea mays full-length cDNA clone ZM...    50   2e-12
(O88746) RecName: Full=Target of Myb protein 1;  &AJ006972_1(AJ0...    55   3e-12
EU960218_1(EU960218|pid:none) Zea mays clone 222622 protein tran...    53   5e-12
(O60784) RecName: Full=Target of Myb protein 1;  &AB463301_1(AB4...    53   6e-12
AM465966_2(AM465966|pid:none) Vitis vinifera contig VV78X102999....    54   6e-12
AL008635_5(AL008635|pid:none) Human DNA sequence from clone RP3-...    53   1e-11
BC122658_1(BC122658|pid:none) Bos taurus target of myb1 (chicken...    54   1e-11
AC004683_11(AC004683|pid:none) Arabidopsis thaliana chromosome 2...    60   7e-11
AK296670_1(AK296670|pid:none) Homo sapiens cDNA FLJ54710 complet...    53   7e-11
(O12940) RecName: Full=Target of Myb protein 1;          Short=T...    51   2e-10
BC077359_1(BC077359|pid:none) Xenopus laevis MGC81354 protein, m...    48   4e-09
EF677742_1(EF677742|pid:none) Picea sitchensis clone WS02774_B21...    65   8e-09
EU955829_1(EU955829|pid:none) Zea mays clone 1547887 VHS and GAT...    63   2e-08
BC083561_1(BC083561|pid:none) Rattus norvegicus hepatocyte growt...    62   5e-08
AL669855_14(AL669855|pid:none) Mouse DNA sequence from clone RP2...    62   5e-08
AK046299_1(AK046299|pid:none) Mus musculus adult male corpora qu...    62   5e-08
U87863_1(U87863|pid:none) Rattus norvegicus SNAP-25 interacting ...    62   5e-08
AL669855_15(AL669855|pid:none) Mouse DNA sequence from clone RP2...    62   5e-08
BT084658_1(BT084658|pid:none) Zea mays full-length cDNA clone ZM...    62   7e-08
AY892763_1(AY892763|pid:none) Synthetic construct Homo sapiens c...    62   7e-08
(O14964) RecName: Full=Hepatocyte growth factor-regulated tyrosi...    62   7e-08
AK303800_1(AK303800|pid:none) Homo sapiens cDNA FLJ61530 complet...    62   7e-08
AF260566_1(AF260566|pid:none) Homo sapiens hepatocyte growth fac...    62   7e-08
AK303305_1(AK303305|pid:none) Homo sapiens cDNA FLJ52529 complet...    60   2e-07
AL596090_4(AL596090|pid:none) Mouse DNA sequence from clone RP23...    60   2e-07
AE014296_1766(AE014296|pid:none) Drosophila melanogaster chromos...    60   3e-07
AC134342_13(AC134342|pid:none) Oryza sativa (japonica cultivar-g...    60   3e-07
AL669954_14(AL669954|pid:none) Mouse DNA sequence from clone RP2...    44   3e-07
BC045274_1(BC045274|pid:none) Xenopus laevis hypothetical protei...    59   4e-07
BC171335_1(BC171335|pid:none) Xenopus tropicalis hepatocyte grow...    59   4e-07
BC167999_1(BC167999|pid:none) Xenopus tropicalis hepatocyte grow...    59   4e-07
CR926226_1(CR926226|pid:none) Xenopus tropicalis finished cDNA, ...    59   4e-07
AP008216_1413(AP008216|pid:none) Oryza sativa (japonica cultivar...    55   2e-06
AK221351_1(AK221351|pid:none) Arabidopsis thaliana mRNA for hypo...    55   5e-06
AC015447_3(AC015447|pid:none) Arabidopsis thaliana chromosome I ...    53   2e-05
AK097926_1(AK097926|pid:none) Homo sapiens cDNA FLJ40607 fis, cl...    53   3e-05
BT036449_1(BT036449|pid:none) Zea mays full-length cDNA clone ZM...    53   3e-05
AK293694_1(AK293694|pid:none) Homo sapiens cDNA FLJ55958 complet...    52   4e-05
AK301944_1(AK301944|pid:none) Homo sapiens cDNA FLJ58550 complet...    51   9e-05
AF467441_1(AF467441|pid:none) Homo sapiens target of myb1-like p...    51   9e-05
AK294846_1(AK294846|pid:none) Homo sapiens cDNA FLJ60511 complet...    51   9e-05
AK295111_1(AK295111|pid:none) Homo sapiens cDNA FLJ54050 complet...    51   9e-05
AL596090_3(AL596090|pid:none) Mouse DNA sequence from clone RP23...    51   9e-05
AK299872_1(AK299872|pid:none) Homo sapiens cDNA FLJ54058 complet...    51   9e-05
AL669855_16(AL669855|pid:none) Mouse DNA sequence from clone RP2...    50   2e-04
AL022537_4(AL022537|pid:none) Arabidopsis thaliana DNA chromosom...    49   4e-04
AK297827_1(AK297827|pid:none) Homo sapiens cDNA FLJ54073 complet...    48   8e-04
(Q7S6J4) RecName: Full=Class E vacuolar protein-sorting machiner...    48   0.001
CU633895_130(CU633895|pid:none) Podospora anserina genomic DNA c...    47   0.002
(A1DFP5) RecName: Full=Vacuolar protein sorting-associated prote...    39   0.002
CR382125_934(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    46   0.004
BC042344_1(BC042344|pid:none) Xenopus laevis similar to Src acti...    46   0.004
(Q5BBL4) RecName: Full=Class E vacuolar protein-sorting machiner...    46   0.004
EF575994_1(EF575994|pid:none) Oryza sativa (indica cultivar-grou...    45   0.005
AL391141_3(AL391141|pid:none) Arabidopsis thaliana DNA chromosom...    45   0.005
AC148755_21(AC148755|pid:none) Medicago truncatula clone mth2-24...    45   0.005
(Q0CJU8) RecName: Full=Class E vacuolar protein-sorting machiner...    44   0.014
AB173827_1(AB173827|pid:none) Macaca fascicularis brain cDNA clo...    44   0.019
(Q06336) RecName: Full=ADP-ribosylation factor-binding protein G...    44   0.019
EU959642_1(EU959642|pid:none) Zea mays clone 219024 unknown mRNA.      43   0.032
(A4RF61) RecName: Full=Class E vacuolar protein-sorting machiner...    43   0.032
(Q5KFQ8) RecName: Full=Class E vacuolar protein-sorting machiner...    43   0.032
BC167731_1(BC167731|pid:none) Xenopus tropicalis hypothetical pr...    42   0.042
AP004462_27(AP004462|pid:none) Oryza sativa Japonica Group genom...    42   0.042
(Q6C2N2) RecName: Full=Class E vacuolar protein-sorting machiner...    42   0.042
AK302278_1(AK302278|pid:none) Homo sapiens cDNA FLJ58553 complet...    42   0.071
CR859188_1(CR859188|pid:none) Pongo abelii mRNA; cDNA DKFZp459F1...    42   0.071
AK301895_1(AK301895|pid:none) Homo sapiens cDNA FLJ58548 complet...    42   0.071
FJ629586_1(FJ629586|pid:none) Synthetic construct Drosophila mel...    42   0.071
AC139170_2(AC139170|pid:none) Oryza sativa (japonica cultivar-gr...    41   0.093
AJ851404_1(AJ851404|pid:none) Gallus gallus mRNA for hypothetica...    41   0.12
BC123512_1(BC123512|pid:none) Bos taurus golgi associated, gamma...    40   0.16
AB005234_12(AB005234|pid:none) Arabidopsis thaliana genomic DNA,...    40   0.16
EU960759_1(EU960759|pid:none) Zea mays clone 228355 protein tran...    40   0.27
(O75886) RecName: Full=Signal transducing adapter molecule 2;   ...    39   0.35
AF042274_1(AF042274|pid:none) Homo sapiens signal transducing ad...    39   0.35
(O88811) RecName: Full=Signal transducing adapter molecule 2;   ...    39   0.35
BC112604_1(BC112604|pid:none) Bos taurus signal transducing adap...    39   0.35
(Q5XHY7) RecName: Full=Signal transducing adapter molecule 2;   ...    39   0.35
(Q8BMI3) RecName: Full=ADP-ribosylation factor-binding protein G...    39   0.46
AL645470_12(AL645470|pid:none) Mouse DNA sequence from clone RP2...    39   0.46
AK122212_1(AK122212|pid:none) Mus musculus mRNA for mKIAA0154 pr...    39   0.46
AL645470_13(AL645470|pid:none) Mouse DNA sequence from clone RP2...    39   0.46
AK132183_1(AK132183|pid:none) Mus musculus 17 days embryo head c...    39   0.46
(Q4P5J4) RecName: Full=Class E vacuolar protein-sorting machiner...    39   0.46
AF343969_1(AF343969|pid:none) Coffea arabica ADP-ribosylation fa...    38   0.78
AL008635_6(AL008635|pid:none) Human DNA sequence from clone RP3-...    38   0.79
BT001591_1(BT001591|pid:none) Drosophila melanogaster RE27138 fu...    38   0.79
CR848466_1(CR848466|pid:none) Xenopus tropicalis finished cDNA, ...    38   1.0
AM269984_6(AM269984|pid:none) Aspergillus niger contig An01c0370...    38   1.0
FN357878_4(FN357878|pid:none) Schistosoma mansoni genome sequenc...    37   1.3
CU928178_405(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    37   1.3
(P38817) RecName: Full=ADP-ribosylation factor-binding protein G...    37   1.7
AP007171_315(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    37   1.7
AB463258_1(AB463258|pid:none) Synthetic construct DNA, clone: pF...    36   3.9
BC043767_1(BC043767|pid:none) Xenopus laevis signal transducing ...    36   3.9
AY144899_1(AY144899|pid:none) Saccharomyces servazzii clone P213...    35   5.1
BC080229_1(BC080229|pid:none) Danio rerio golgi associated, gamm...    35   5.1
CU928170_684(CU928170|pid:none) Kluyveromyces thermotolerans str...    35   5.1
CP001173_849(CP001173|pid:none) Helicobacter pylori G27, complet...    35   6.6
(Q58718) RecName: Full=DNA double-strand break repair rad50 ATPa...    35   8.7

>(Q54GH3) RecName: Full=Target of Myb protein 1; AltName: Full=DdTom1;
          Length = 663

 Score =  326 bits (835), Expect = 1e-87
 Identities = 165/188 (87%), Positives = 165/188 (87%)
 Frame = +2

Query: 497  NAFQARHDVPGFYETYSFIKRSGYKFPPKPSDAPILNFNNSPAKRTVSTTILTNNSHSTT 676
            NAFQARHDVPGFYETYSFIKRSGYKFPPKPSDAPILNFNNSPAKRTVSTTILTNNSHSTT
Sbjct: 110  NAFQARHDVPGFYETYSFIKRSGYKFPPKPSDAPILNFNNSPAKRTVSTTILTNNSHSTT 169

Query: 677  PPQAXXXXXXXXXXXXXXXXXXXXXXXQPIKNQEISSIKGSTSVFNEMISFLNVEDEDPQ 856
            PPQA                       QPIKNQEISSIKGSTSVFNEMISFLNVEDEDPQ
Sbjct: 170  PPQANVPSFNNVSSVGSNNAGGGGSSSQPIKNQEISSIKGSTSVFNEMISFLNVEDEDPQ 229

Query: 857  ENDLIKELFETCKQSQIRVKEMIESGSTNERDLNVLLKLNDEINNALNDHEACIKRRRAF 1036
            ENDLIKELFETCKQSQIRVKEMIESGSTNERDLNVLLKLNDEINNALNDHEACIKRRRAF
Sbjct: 230  ENDLIKELFETCKQSQIRVKEMIESGSTNERDLNVLLKLNDEINNALNDHEACIKRRRAF 289

Query: 1037 VENGYKPV 1060
            VENGYKPV
Sbjct: 290  VENGYKPV 297

 Score =  200 bits (509), Expect = 9e-50
 Identities = 101/119 (84%), Positives = 102/119 (85%)
 Frame = +1

Query: 151 MVTELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRSRVIXXXXXX 330
           MVTELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRSRVI
Sbjct: 1   MVTELVDKATNELLIQTDWTTVLQISDILNRDPIHARGVVRQVTKKLKDRSRVILLALEL 60

Query: 331 XXXXXQNCHCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAXXXXKCIP 507
                QNCHCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNA      +P
Sbjct: 61  ADSLLQNCHCTHVYFAERTFQTELCRLIMNKKTKLNVKEKTLEIVESWGNAFQARHDVP 119

 Score = 49.7 bits (117), Expect = 3e-04
 Identities = 26/45 (57%), Positives = 26/45 (57%)
 Frame = +2

Query: 1127 FSAPTYSQFTXXXXXXXXXXXXXXXXXXXSNMYPNNNMSGKSSLI 1261
            FSAPTYSQFT                   SNMYPNNNMSGKSSLI
Sbjct: 619  FSAPTYSQFTNYAQPNQQPYNNNYGGMNQSNMYPNNNMSGKSSLI 663

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,669,690,825
Number of extensions: 27764955
Number of successful extensions: 62537
Number of sequences better than 10.0: 119
Number of HSP's gapped: 62400
Number of HSP's successfully gapped: 173
Length of query: 471
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 339
Effective length of database: 623,955,076
Effective search space: 211520770764
Effective search space used: 211520770764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.70  gvh: 0.38  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for Contig-U12140-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 3
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 3
CH (FL, L) 1
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0