Contig-U12133-1
Contig ID Contig-U12133-1
Contig update 2002.12.18
Contig sequence
>Contig-U12133-1 (Contig-U12133-1Q) /CSM_Contig/Contig-U12133-1Q.Seq.d
AAACCATATCATTATTAGCACATATAAAAGAGGCATATAATGATAATGGA
CTTCATTTAGTGGTGGTACCAGCAACGATTTTAGCAAATTGGGAGAGAGA
ATTTCCAAACATGGTGTCCATCATTATCAATCGTTAGATACTATGGTAAC
NTTAGGGAGAGAGAAGAACTTAGATATGAATTAAAGAAAAAGAGACCTGG
TAAAGATTTCAATGTGATCTTAACAACCTATAATCTTTTATTTGCAAATA
ATGATAGAGGTTTCCTAAAGAGATTTGATTATAGTTTTTTAATATTGGAT
GAAGCTCAAAATATAAAGAATTCAGATTCAAAACGTTATAAGAATATATT
CAAAATCGGAGCACATCATAGACTACTATTGACAGGTACACCATTACAAA
ATAATCTCTATGAACTTTGGTCATTATTAAATTTCTTAATGCCACATATC
TTTGGTTCAGTAAAGAAGGATAATTATCTATTGAACCAATTGTTGGAATA
TAATGGTGATGATTGTGATAGTGCTATCACTAGAATGAAGAAAATCCTAT
CACCATTCATTTTACGTCGTTTAAAATCAACAGTCTCTAAAGAATTAAAA
CCAAAGATTGAACATGTTGAAATTTGTAAATTACCAAAATTTCAAGATGA
AACCTATAAAAATATAATTGAACGTTCAAAATCTCAATGGAAATTAAGAA
ATGAATTACTTTTAAAAAAAGAAAAAAGAAGAAAAAGAAAAAGAAAAACA
ATCATTAATTAATAGTAGTAATAGCAGNATTAAAAAGAAA----------
TAAATCAAAGGTATTAATTTTCTCACAAATGACAAGAGTTTTGGATATAT
TAGAGGATGTATTGGATATTTTTGGTTATAATTTCACTCGTTTAGATGGT
TCAACACCAGTTAATGAACGTCAATCTATCATTGACCATTTCTCATCAAA
AGAAACTATACCCGTGTTTTTACTCTCAACAAATTCTGGTGGTTTAGGTA
TTAATTTAACATGTGCCAATGTTGTCATCTTTTATGACCTCTCATTTAAT
CCTCAAGTTGATCGTCAAGCAGAAGATCGTGCTCATCGTCTTGGTCAAGA
AAGAGAGGTTATCATCTATAAACTCTTGGCTGAAAATACTGTTGATATCA
ATATTCATGAATCTGCAAATCAAAAAAAGAAATTAAATGATAATGTTTTG
GAAGAAGGTACTTTTAATAATGCTGAAACTAAATTACAATCTAAAAATAT
TTTAAAAATTTTAGATTCAATTTTTAAATAATTTAAATGTT

Gap gap included
Contig length 1281
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 322172
End point 320897
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U12133
List of clone(s)

est1=VHF282Z,1,462
est2=CHH425Z,73,791
est3=AHE833Z,150,680
est4=SLB581F,200,690
est5=SLB581Z,792,1283
Translated Amino Acid sequence
nhiiistykrgi***wtsfsggtsndfsklgeriskhgvhhyqsldtmvtlgreknldmn
*rkrdlvkism*s*qpiifylqimievs*rdliivf*ywmklki*riqiqnviriyskse
hiidyy*qvhhykiismnfghy*is*chislvq*rriiiy*tncwnimvmivivlsle*r
ksyhhsfyvv*nqqslkn*nqrlnmlkfvnyqnfkmkpiki*lnvqnlngn*emnyf*KK
KKEEKEKEKQSLINSSNSXIKKK---

---KSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIPVFL
LSTNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDIN
IHESANQKKKLNDNVLEEGTFNNAETKLQSKNILKILDSIFK*fkc


Translated Amino Acid sequence (All Frames)
Frame A:
kpyhy*hi*krhimimdfi*wwyqqrf*qigrenfqtwcpslsivryygnxrereelrye
lkkkrpgkdfnvilttynllfanndrgflkrfdysflildeaqniknsdskryknifkig
ahhrllltgtplqnnlyelwsllnflmphifgsvkkdnyllnqlleyngddcdsaitrmk
kilspfilrrlkstvskelkpkiehveicklpkfqdetykniiersksqwklrnelllkk
ekrrkrkrktiin*****qx*ke---

---*ikginfltndksfgyirgcigyfwl*fhsfrwfnts**tsiyh*pflikrnytrvf
tlnkfwwfry*fnmcqcchll*pli*sss*sssrrscssswsrkrgyhl*tlg*kyc*yq
ys*ickskkeik**cfgrryf**c*n*iti*kyfknfrfnf*ii*m

Frame B:
nhiiistykrgi***wtsfsggtsndfsklgeriskhgvhhyqsldtmvtlgreknldmn
*rkrdlvkism*s*qpiifylqimievs*rdliivf*ywmklki*riqiqnviriyskse
hiidyy*qvhhykiismnfghy*is*chislvq*rriiiy*tncwnimvmivivlsle*r
ksyhhsfyvv*nqqslkn*nqrlnmlkfvnyqnfkmkpiki*lnvqnlngn*emnyf*KK
KKEEKEKEKQSLINSSNSXIKKK---

---KSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIPVFL
LSTNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDIN
IHESANQKKKLNDNVLEEGTFNNAETKLQSKNILKILDSIFK*fkc

Frame C:
tisllahikeayndnglhlvvvpatilanwerefpnmvsiiinr*ilw*x*gerrt*i*i
keketw*rfqcdlnnl*sfick***rfpkei*l*ffnig*sskykefrfktl*eyiqnrs
ts*ttidrytitk*sl*tlviikflnatylwfskeg*lsiepivgi*w**l**cyh*nee
npitihftsfkinsl*riktkd*tc*nl*itkisr*nl*kyn*tfkismeikk*itfkkr
kkkkkkkknnh*livviaxlkr---

---nqry*fshk*qefwiy*rmywiflviislv*mvqhqlmnvnlsltishqkklypcfy
sqqilvv*vli*hvpmlssfmtshlilklivkqkivlivlvkkerlssinswlkillisi
fmnlqikkrn*mimfwkkvllimlklnynlkif*kf*iqflnnlnv

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12133-1 (Contig-U12133-1Q)
/CSM_Contig/Contig-U12133-1Q.Seq.d
(1291 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12133-1 (Contig-U12133-1Q) /CSM_Contig/Conti... 1407 0.0
Contig-U10818-1 (Contig-U10818-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U14439-1 (Contig-U14439-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12053-1 (Contig-U12053-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U10919-1 (Contig-U10919-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U14768-1 (Contig-U14768-1Q) /CSM_Contig/Conti... 36 0.091
Contig-U12122-1 (Contig-U12122-1Q) /CSM_Contig/Conti... 36 0.091
Contig-U12025-1 (Contig-U12025-1Q) /CSM_Contig/Conti... 36 0.091
Contig-U09182-1 (Contig-U09182-1Q) /CSM_Contig/Conti... 36 0.091
Contig-U03053-1 (Contig-U03053-1Q) /CSM_Contig/Conti... 36 0.091

>Contig-U12133-1 (Contig-U12133-1Q) /CSM_Contig/Contig-U12133-1Q.Seq.d
Length = 1291

Score = 1407 bits (710), Expect = 0.0
Identities = 713/713 (100%)
Strand = Plus / Plus


Query: 1 aaaccatatcattattagcacatataaaagaggcatataatgataatggacttcatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaccatatcattattagcacatataaaagaggcatataatgataatggacttcatttag 60


Query: 61 tggtggtaccagcaacgattttagcaaattgggagagagaatttccaaacatggtgtcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggtggtaccagcaacgattttagcaaattgggagagagaatttccaaacatggtgtcca 120


Query: 121 tcattatcaatcgttagatactatggtaacnttagggagagagaagaacttagatatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcattatcaatcgttagatactatggtaacnttagggagagagaagaacttagatatgaa 180


Query: 181 ttaaagaaaaagagacctggtaaagatttcaatgtgatcttaacaacctataatctttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaaagaaaaagagacctggtaaagatttcaatgtgatcttaacaacctataatctttta 240


Query: 241 tttgcaaataatgatagaggtttcctaaagagatttgattatagttttttaatattggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttgcaaataatgatagaggtttcctaaagagatttgattatagttttttaatattggat 300


Query: 301 gaagctcaaaatataaagaattcagattcaaaacgttataagaatatattcaaaatcgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagctcaaaatataaagaattcagattcaaaacgttataagaatatattcaaaatcgga 360


Query: 361 gcacatcatagactactattgacaggtacaccattacaaaataatctctatgaactttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcacatcatagactactattgacaggtacaccattacaaaataatctctatgaactttgg 420


Query: 421 tcattattaaatttcttaatgccacatatctttggttcagtaaagaaggataattatcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcattattaaatttcttaatgccacatatctttggttcagtaaagaaggataattatcta 480


Query: 481 ttgaaccaattgttggaatataatggtgatgattgtgatagtgctatcactagaatgaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgaaccaattgttggaatataatggtgatgattgtgatagtgctatcactagaatgaag 540


Query: 541 aaaatcctatcaccattcattttacgtcgtttaaaatcaacagtctctaaagaattaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaatcctatcaccattcattttacgtcgtttaaaatcaacagtctctaaagaattaaaa 600


Query: 601 ccaaagattgaacatgttgaaatttgtaaattaccaaaatttcaagatgaaacctataaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccaaagattgaacatgttgaaatttgtaaattaccaaaatttcaagatgaaacctataaa 660


Query: 661 aatataattgaacgttcaaaatctcaatggaaattaagaaatgaattactttt 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatataattgaacgttcaaaatctcaatggaaattaagaaatgaattactttt 713


Score = 870 bits (439), Expect = 0.0
Identities = 486/493 (98%)
Strand = Plus / Plus


Query: 749 caatcattaattaatagtagtaatagcagnattaaaaagaaannnnnnnnnntaaatcaa 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 caatcattaattaatagtagtaatagcagnattaaaaagaaannnnnnnnnntaaatcaa 808


Query: 809 aggtattaattttctcacaaatgacaagagttttggatatattagaggatgtattggata 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aggtattaattttctcacaaatgacaagagttttggatatattagaggatgtattggata 868


Query: 869 tttttggttataatttcactcgtttagatggttcaacaccagttaatgaacgtcaatcta 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tttttggttataatttcactcgtttagatggttcaacaccagttaatgaacgtcaatcta 928


Query: 929 tcattgaccatttctcatcaaaagaaactatacccgtgtttttactctcaacaaattctg 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tcattgaccatttctcatcaaaagaaactatacccgtgtttttactctcaacaaattctg 988


Query: 989 gtggtttaggtattaatttaacatgtgccaatgttgtcatcttttatgacctctcattta 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 gtggtttaggtattaatttaacatgtgccaatgttgtcatcttttatgacctctcattta 1048


Query: 1049 atcctcaagttgatcgtcaagcagaagatcgtgctcatcgtcttggtcaagaaagagagg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 atcctcaagttgatcgtcaagcagaagatcgtgctcatcgtcttggtcaagaaagagagg 1108


Query: 1109 ttatcatctataaactcttggctgaaaatactgttgatatcaatattcatgaatctgcaa 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 ttatcatctataaactcttggctgaaaatactgttgatatcaatattcatgaatctgcaa 1168


Query: 1169 atcnnnnnnngaaattaaatgataatgttttggaagaaggtacttttaataatgctgaaa 1228
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 atcaaaaaaagaaattaaatgataatgttttggaagaaggtacttttaataatgctgaaa 1228


Query: 1229 ctaaattacaatc 1241
|||||||||||||
Sbjct: 1229 ctaaattacaatc 1241


>Contig-U10818-1 (Contig-U10818-1Q) /CSM_Contig/Contig-U10818-1Q.Seq.d
Length = 3604

Score = 46.1 bits (23), Expect = 9e-05
Identities = 41/47 (87%)
Strand = Plus / Plus


Query: 385 ggtacaccattacaaaataatctctatgaactttggtcattattaaa 431
||||| ||||||||||||||| | ||||| | ||||||||||||||
Sbjct: 1168 ggtactccattacaaaataatttacatgaattatggtcattattaaa 1214


>Contig-U14439-1 (Contig-U14439-1Q) /CSM_Contig/Contig-U14439-1Q.Seq.d
Length = 705

Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 938 atttctcatcaaaagaaac 956
|||||||||||||||||||
Sbjct: 306 atttctcatcaaaagaaac 324


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,235
Number of Sequences: 6905
Number of extensions: 18235
Number of successful extensions: 1960
Number of sequences better than 10.0: 197
length of query: 1291
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1275
effective length of database: 5,564,391
effective search space: 7094598525
effective search space used: 7094598525
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12133-1 (Contig-U12133-1Q) /CSM_Contig/Contig-U12133-1Q.Seq.d
(1291 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ379864) Dictyostelium discoideum cDNA clone:ddc36b08, 3' ... 1265 0.0 2
(BJ350554) Dictyostelium discoideum cDNA clone:dda40b10, 3' ... 983 0.0 1
(AU060815) Dictyostelium discoideum slug cDNA, clone SLB581. 973 0.0 1
(BJ439835) Dictyostelium discoideum cDNA clone:ddv41c22, 3' ... 686 0.0 2
(AU033896) Dictyostelium discoideum slug cDNA, clone SLB581. 735 0.0 2
(CZ543874) SRAA-aad52e04.g1 Strongyloides ratti whole genome... 80 2e-10 1
(DY891465) CeleSEQ10166 Cunninghamella elegans pBluescript (... 40 9e-08 3
(DQ331276) Synthetic construct Saccharomyces cerevisiae clon... 50 5e-04 2
(DJ205458) Method for identification of useful proteins deri... 50 5e-04 2
(FC592416) CAXP7003.fwd CAXP Lottia gigantea from head, foot... 48 0.003 2
(CB346697) CAB2SG0002IIF_H10 Cabernet Sauvignon Berry - CAB2... 42 0.003 2
(BH163469) ENTSX73TF Entamoeba histolytica Sheared DNA Entam... 56 0.003 1
(BH159292) ENTSN36TF Entamoeba histolytica Sheared DNA Entam... 56 0.003 1
(FF579515) Fernando_27_F04 Drosophila gastrula substracted c... 40 0.004 2
(U51032) Saccharomyces cerevisiae chromosome IV cosmid 9651. 50 0.007 3
(AJ562968) Cryptosporidium parvum GSS, PAC clone pica_0012_g... 38 0.007 3
(AC069353) Homo sapiens chromosome 8, clone RP11-37B2, compl... 38 0.008 7
(AJ561981) Cryptosporidium parvum GSS, PAC clone pica_0006_b... 38 0.009 3
(B88613) CpG0162B CpIOWAgDNA1 Cryptosporidium parvum genomic... 38 0.010 3
(EW967516) LS_12_O01_T7 Headlice composite library with all ... 54 0.014 1
(EW965636) BRHL_04_N10_T7 Headlice composite library with al... 54 0.014 1
(CZ286671) cp48c03.f Candida parapsilosis Random Genomic Lib... 40 0.016 2
(AQ988866) 19A1G01NE.R1 C. parvum Lambda Zap Express Library... 40 0.044 2
(FC784893) CBGC15450.fwd CBGC Lottia gigantea 15h 18h embryo... 38 0.056 2
(FC687262) CAXX1936.fwd CAXX Lottia gigantea from male gonad... 38 0.064 2
(FC675339) CAXX10626.rev CAXX Lottia gigantea from male gona... 38 0.073 2
(AB304467) Tricholoma matsutake DNA, contains a fumarate hyd... 34 0.14 2
(CU469363) Zebrafish DNA sequence from clone DKEY-197C14 in ... 50 0.21 1
(AL807377) Zebrafish DNA sequence from clone CH211-229G3. 50 0.21 1
(DJ025872) Genome-wide DNA marker of Saccharomyces cerevisiae. 50 0.21 1
(AZ926589) 476.dis09b07.s1 Saccharomyces castellii NRRL Y-12... 50 0.21 1
(DR391422) USDA-FP_151354 Adult Alate Aphis gossypii (WHAGA)... 50 0.21 1
(CU851004) A BAC library has been constructed from PN40024 g... 42 0.21 2
(CR382138) Debaryomyces hansenii chromosome F of strain CBS7... 46 0.40 2
(EL505246) F09_2445_603.AB1 Blood stage Plasmodium falciparu... 38 0.77 2
(DJ132133) Method for identification of useful proteins deri... 48 0.83 1
(CZ543850) SRAA-aad52d04.g1 Strongyloides ratti whole genome... 48 0.83 1
(CZ535077) SRAA-aac95b07.g1 Strongyloides ratti whole genome... 48 0.83 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 48 0.83 1
(AM180355) Clostridium difficile 630 complete genome. 48 0.83 1
(AM454110) Vitis vinifera contig VV78X152350.10, whole genom... 38 0.98 3
(AY094908) Drosophila melanogaster RH13158 full insert cDNA. 40 1.0 2
(CZ534269) SRAA-aac90c06.g1 Strongyloides ratti whole genome... 38 1.0 2
(CQ590895) Sequence 18653 from Patent WO0171042. 40 1.0 2
(BD301505) Identification and Use of Molecules Implicated in... 40 1.0 2
(AX683150) Sequence 124 from Patent EP1279744. 40 1.0 2
(L27127) Drosophila melanogaster imitation-SWI protein (ISWI... 40 1.0 2
(AP005179) Oryza sativa Japonica Group genomic DNA, chromoso... 40 1.2 4
(AB162437) Schizosaccharomyces pombe snf22 gene for SNF2-fam... 38 1.2 3
(DD183499) Regulation of homologous recombination through th... 38 1.2 3
(AC154799) Mus musculus BAC clone RP23-79K21 from chromosome... 36 1.4 9
(CQ590894) Sequence 18652 from Patent WO0171042. 40 1.6 2
(AP005877) Oryza sativa Japonica Group genomic DNA, chromoso... 40 1.7 4
(BM879947) ku03a07.y1 Strongyloides ratti PA female naive pA... 38 2.4 2
(AC190674) Zea mays chromosome 4 clone CH201-167G13; ZMMBBc0... 38 2.7 4
(BH765919) BMBAC358D12T7_PSU Brugia malayi Genomic Bac Libra... 40 2.8 2
(CU640366) Podospora anserina genomic DNA chromosome 2, supe... 46 3.3 1
(CR382133) Debaryomyces hansenii chromosome A of strain CBS7... 46 3.3 1
(Z78022) Human DNA sequence from clone RP1-37M17 on chromoso... 46 3.3 1
(AC169778) Bos taurus clone CH240-198K18, WORKING DRAFT SEQU... 46 3.3 1
(FH247347) CHO_OF3140xo08f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1
(CC918028) t105k10ba.r1 TAMBT Bos taurus genomic clone t105k... 46 3.3 1
(DY672302) STRA508JX cold-stressed Fragaria vesca seedlings ... 46 3.3 1
(CU913300) Podospora anserina mRNA sequence from clone HH0AB... 46 3.3 1
(CU888698) Podospora anserina mRNA sequence from clone HH0AB... 46 3.3 1
(BM162717) EST565240 PyBS Plasmodium yoelii yoelii cDNA clon... 46 3.3 1
(BJ422540) Dictyostelium discoideum cDNA clone:ddv46c08, 5' ... 46 3.3 1
(BJ420459) Dictyostelium discoideum cDNA clone:ddv39j08, 5' ... 46 3.3 1
(BJ419971) Dictyostelium discoideum cDNA clone:ddv37e24, 5' ... 46 3.3 1
(BJ365714) Dictyostelium discoideum cDNA clone:ddc36h10, 5' ... 46 3.3 1
(BJ339261) Dictyostelium discoideum cDNA clone:dda64o18, 5' ... 46 3.3 1
(BJ336387) Dictyostelium discoideum cDNA clone:dda53p15, 5' ... 46 3.3 1
(CP000487) Campylobacter fetus subsp. fetus 82-40, complete ... 46 3.3 1
(AE015927) Clostridium tetani E88, complete genome. 46 3.3 1
(BM879438) kt95e01.y1 Strongyloides ratti PA female naive pA... 32 3.3 3
(FC818589) Sr_pAMT7_012g09_T7 S. ratti mixed stage pAMP Stro... 38 3.4 2
(EJ103010) 1091141586926 Global-Ocean-Sampling_GS-27-01-01-1... 36 3.5 2
(AC137552) Medicago truncatula clone mth2-9k5, complete sequ... 36 3.7 7
(AZ693060) ENTJK09TF Entamoeba histolytica Sheared DNA Entam... 36 3.8 2
(AZ669297) ENTHP89TR Entamoeba histolytica Sheared DNA Entam... 36 3.8 2
(AZ673840) ENTIV66TR Entamoeba histolytica Sheared DNA Entam... 36 4.1 2
(CR382123) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 32 5.2 2
(CR380958) Candida glabrata strain CBS138 chromosome L compl... 34 5.3 2
(BM167096) EST569619 PyBS Plasmodium yoelii yoelii cDNA clon... 40 5.4 2
(EY148414) CBTN11256.b1_P05.ab1:P Triphysaria pusilla root t... 34 6.0 3
(AP009835) Lotus japonicus genomic DNA, clone: LjT33L17, TM1... 34 6.5 2
(DY893635) CeleSEQ13030 Cunninghamella elegans pBluescript (... 30 6.8 3
(AC023927) Homo sapiens chromosome 2 clone RP11-30C22 map 2,... 40 7.6 4
(CQ579255) Sequence 7013 from Patent WO0171042. 44 7.8 2
(EF485010) Philodina roseola clone Pr_TEL_K telomeric repeat... 34 7.9 2
(CT432398) Sus scrofa genomic clone CH242-507N16, genomic su... 32 8.2 2
(AC120711) Rattus norvegicus clone CH230-480J6, *** SEQUENCI... 38 8.8 7
(CQ579254) Sequence 7012 from Patent WO0171042. 44 9.6 2

>(BJ379864) Dictyostelium discoideum cDNA clone:ddc36b08, 3' end,
single read.
Length = 719

Score = 1265 bits (638), Expect(2) = 0.0
Identities = 641/641 (100%)
Strand = Plus / Minus


Query: 73 caacgattttagcaaattgggagagagaatttccaaacatggtgtccatcattatcaatc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 caacgattttagcaaattgggagagagaatttccaaacatggtgtccatcattatcaatc 660


Query: 133 gttagatactatggtaacnttagggagagagaagaacttagatatgaattaaagaaaaag 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gttagatactatggtaacnttagggagagagaagaacttagatatgaattaaagaaaaag 600


Query: 193 agacctggtaaagatttcaatgtgatcttaacaacctataatcttttatttgcaaataat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agacctggtaaagatttcaatgtgatcttaacaacctataatcttttatttgcaaataat 540


Query: 253 gatagaggtttcctaaagagatttgattatagttttttaatattggatgaagctcaaaat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gatagaggtttcctaaagagatttgattatagttttttaatattggatgaagctcaaaat 480


Query: 313 ataaagaattcagattcaaaacgttataagaatatattcaaaatcggagcacatcataga 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ataaagaattcagattcaaaacgttataagaatatattcaaaatcggagcacatcataga 420


Query: 373 ctactattgacaggtacaccattacaaaataatctctatgaactttggtcattattaaat 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctactattgacaggtacaccattacaaaataatctctatgaactttggtcattattaaat 360


Query: 433 ttcttaatgccacatatctttggttcagtaaagaaggataattatctattgaaccaattg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttcttaatgccacatatctttggttcagtaaagaaggataattatctattgaaccaattg 300


Query: 493 ttggaatataatggtgatgattgtgatagtgctatcactagaatgaagaaaatcctatca 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttggaatataatggtgatgattgtgatagtgctatcactagaatgaagaaaatcctatca 240


Query: 553 ccattcattttacgtcgtttaaaatcaacagtctctaaagaattaaaaccaaagattgaa 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccattcattttacgtcgtttaaaatcaacagtctctaaagaattaaaaccaaagattgaa 180


Query: 613 catgttgaaatttgtaaattaccaaaatttcaagatgaaacctataaaaatataattgaa 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 catgttgaaatttgtaaattaccaaaatttcaagatgaaacctataaaaatataattgaa 120


Query: 673 cgttcaaaatctcaatggaaattaagaaatgaattactttt 713
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cgttcaaaatctcaatggaaattaagaaatgaattactttt 79

Score = 77.8 bits (39), Expect(2) = 0.0
Identities = 42/42 (100%)
Strand = Plus / Minus


Query: 749 caatcattaattaatagtagtaatagcagnattaaaaagaaa 790
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 caatcattaattaatagtagtaatagcagnattaaaaagaaa 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,494,324,860
Number of extensions: 89979096
Number of successful extensions: 7121055
Number of sequences better than 10.0: 93
Length of query: 1291
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1267
Effective length of database: 97,308,875,965
Effective search space: 123290345847655
Effective search space used: 123290345847655
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12133-1 (Contig-U12133-1Q) /CSM_Contig/Contig-U12133-1Q.Seq.d
(1291 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AP008215_745(AP008215|pid:none) Oryza sativa (japonica cultivar-... 192 3e-47
AC146936_20(AC146936|pid:none) Oryza sativa (japonica cultivar-g... 191 6e-47
AM180355_2250(AM180355|pid:none) Clostridium difficile 630 compl... 181 7e-44
AE014185_229(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 171 2e-42
AM910988_83(AM910988|pid:none) Plasmodium knowlesi strain H chro... 170 3e-42
CP000939_1673(CP000939|pid:none) Clostridium botulinum B1 str. O... 172 3e-42
AM412317_1651(AM412317|pid:none) Clostridium botulinum A str. AT... 172 4e-42
CP000962_1736(CP000962|pid:none) Clostridium botulinum A3 str. L... 172 4e-42
AE001437_2950(AE001437|pid:none) Clostridium acetobutylicum ATCC... 167 2e-41
CP001083_1615(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 172 3e-41
CP000721_2634(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 171 4e-41
CP001083_1772(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 168 6e-41
CT573073_975(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 168 8e-41
CP001037_5530(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 170 9e-41
AM412317_1579(AM412317|pid:none) Clostridium botulinum A str. AT... 169 2e-40
CP000728_1567(CP000728|pid:none) Clostridium botulinum F str. La... 169 2e-40
BA000026_905(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 169 2e-40
AP008955_3688(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 166 2e-40
CP000939_1604(CP000939|pid:none) Clostridium botulinum B1 str. O... 168 3e-40
AE016877_4999(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 151 2e-39
AE013599_3388(AE013599|pid:none) Drosophila melanogaster chromos... 149 6e-38
BT044534_1(BT044534|pid:none) Drosophila melanogaster LP03212 fu... 149 6e-38
AF254373_1(AF254373|pid:none) Drosophila melanogaster DOMINO B (... 149 6e-38
AE013599_3390(AE013599|pid:none) Drosophila melanogaster chromos... 149 6e-38
AY058653_1(AY058653|pid:none) Drosophila melanogaster LD35434 fu... 149 6e-38
AM778946_59(AM778946|pid:none) Microcystis aeruginosa PCC 7806 g... 160 9e-38
CP001186_1645(CP001186|pid:none) Bacillus cereus G9842, complete... 158 4e-37
(O13682) RecName: Full=Helicase swr1; EC=3.6.1.-; &CU3... 156 1e-36
CP001283_1762(CP001283|pid:none) Bacillus cereus AH820, complete... 156 1e-36
CP001407_1653(CP001407|pid:none) Bacillus cereus 03BB102, comple... 156 1e-36
(Q4WAS9) RecName: Full=Helicase swr1; EC=3.6.1.-; 156 2e-36
CP001287_283(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 147 2e-36
CP001348_3358(CP001348|pid:none) Clostridium cellulolyticum H10,... 155 2e-36
(Q6BKC2) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 155 2e-36
AD2418(AD2418) SWI/SNF family helicase [imported] - Nostoc sp. (... 155 3e-36
CP001039_7(CP001039|pid:none) Nostoc punctiforme PCC 73102 plasm... 155 3e-36
AC005936_13(AC005936|pid:none) Arabidopsis thaliana chromosome 2... 148 3e-36
CP000227_1715(CP000227|pid:none) Bacillus cereus Q1, complete ge... 155 4e-36
CP001177_1757(CP001177|pid:none) Bacillus cereus AH187, complete... 155 4e-36
FM992689_685(FM992689|pid:none) Candida dubliniensis CD36 chromo... 155 4e-36
(Q59U81) RecName: Full=Helicase SWR1; EC=3.6.1.-; 155 4e-36
CP000903_1641(CP000903|pid:none) Bacillus weihenstephanensis KBA... 155 4e-36
AE017194_1865(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 154 5e-36
CP000764_1367(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 154 5e-36
AP004096_24(AP004096|pid:none) Oryza sativa Japonica Group genom... 154 7e-36
BC089242_1(BC089242|pid:none) Xenopus tropicalis SWI/SNF-related... 139 7e-36
CP001078_1596(CP001078|pid:none) Clostridium botulinum E3 str. A... 154 9e-36
AY279398_1(AY279398|pid:none) Arabidopsis thaliana photoperiod i... 154 9e-36
CP000500_641(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 153 1e-35
(Q4IAK7) RecName: Full=Helicase SWR1; EC=3.6.1.-; 152 1e-35
AM270258_21(AM270258|pid:none) Aspergillus niger contig An12c001... 153 1e-35
BC052963_1(BC052963|pid:none) Homo sapiens Snf2-related CBP acti... 152 2e-35
AF143946_1(AF143946|pid:none) Homo sapiens transcriptional activ... 152 2e-35
(Q6ZRS2) RecName: Full=Helicase SRCAP; EC=3.6.1.-; AltN... 152 2e-35
BC172428_1(BC172428|pid:none) Synthetic construct Homo sapiens c... 152 2e-35
FM992695_700(FM992695|pid:none) Candida dubliniensis CD36 chromo... 152 2e-35
AB384457_1(AB384457|pid:none) Synthetic construct DNA, clone: pF... 152 2e-35
FN357312_10(FN357312|pid:none) Schistosoma mansoni genome sequen... 150 2e-35
FN357312_11(FN357312|pid:none) Schistosoma mansoni genome sequen... 150 2e-35
CP000497_623(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 152 3e-35
(Q5ARK3) RecName: Full=Helicase swr1; EC=3.6.1.-; 152 3e-35
AM920436_1170(AM920436|pid:none) Penicillium chrysogenum Wiscons... 152 3e-35
FN392322_137(FN392322|pid:none) Pichia pastoris GS115 chromosome... 151 4e-35
(Q6CA87) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 151 4e-35
(Q7S133) RecName: Full=Helicase swr-1; EC=3.6.1.-; 151 4e-35
EU057693_1(EU057693|pid:none) Hippoglossus hippoglossus Snf2-rel... 135 5e-35
(Q6FK48) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 151 6e-35
(Q6CJ38) RecName: Full=Helicase SWR1; EC=3.6.1.-; &CR3... 150 1e-34
(Q05471) RecName: Full=Helicase SWR1; EC=3.6.1.-; AltNa... 150 1e-34
(Q9NEL2) RecName: Full=Helicase ssl-1; EC=3.6.1.-; AltN... 140 1e-34
AL807792_3(AL807792|pid:none) Zebrafish DNA sequence from clone ... 140 1e-34
AY051813_1(AY051813|pid:none) Drosophila melanogaster LD32234 fu... 149 2e-34
AB032948_1(AB032948|pid:none) Homo sapiens mRNA for KIAA1122 pro... 137 2e-34
AB385429_1(AB385429|pid:none) Synthetic construct DNA, clone: pF... 137 2e-34
(Q9H4L7) RecName: Full=SWI/SNF-related matrix-associated actin-d... 137 2e-34
AB169326_1(AB169326|pid:none) Macaca fascicularis testis cDNA, c... 137 2e-34
AK301668_1(AK301668|pid:none) Homo sapiens cDNA FLJ58701 complet... 137 2e-34
AL359929_1(AL359929|pid:none) Homo sapiens mRNA; cDNA DKFZp762K2... 137 2e-34
CR954202_161(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 149 3e-34
CP000582_272(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 148 4e-34
(Q759G7) RecName: Full=Helicase SWR1; EC=3.6.1.-; &AE0... 148 5e-34
CR382135_682(CR382135|pid:none) Debaryomyces hansenii strain CBS... 147 8e-34
AL606628_18(AL606628|pid:none) Oryza sativa genomic DNA, chromos... 147 8e-34
CP000612_3196(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 144 8e-34
(Q04692) RecName: Full=SWI/SNF-related matrix-associated actin-d... 136 2e-33
BC042442_1(BC042442|pid:none) Mus musculus SWI/SNF-related, matr... 136 2e-33
CU928176_224(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 145 3e-33
(Q5K8T2) RecName: Full=Helicase SWR1; EC=3.6.1.-; &AE0... 145 3e-33
FN357305_17(FN357305|pid:none) Schistosoma mansoni genome sequen... 132 3e-33
CR382126_326(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 145 4e-33
CR382132_1194(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 145 4e-33
(P31380) RecName: Full=Uncharacterized ATP-dependent helicase YA... 144 4e-33
AB210714_1(AB210714|pid:none) Ciona intestinalis Ci-SWI/SNF mRNA... 144 9e-33
AE016816_490(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 143 1e-32
CR954207_416(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 125 3e-32
CR848717_1(CR848717|pid:none) Zebrafish DNA sequence from clone ... 142 3e-32
AP003490_13(AP003490|pid:none) Oryza sativa Japonica Group genom... 125 3e-32
BC154479_1(BC154479|pid:none) Danio rerio helicase, lymphoid-spe... 141 4e-32
BC016071_1(BC016071|pid:none) Mus musculus SWI/SNF related, matr... 141 4e-32
(Q6PGB8) RecName: Full=Probable global transcription activator S... 141 4e-32
AL935288_3(AL935288|pid:none) Zebrafish DNA sequence from clone ... 141 4e-32
AF325920_1(AF325920|pid:none) Mus musculus DNA-dependent ATPase ... 141 4e-32
AY612850_1(AY612850|pid:none) Danio rerio PASG mRNA, complete cds. 139 2e-31
(O42861) RecName: Full=Uncharacterized ATP-dependent helicase C2... 139 2e-31
AL022577_2(AL022577|pid:none) Human DNA sequence from clone RP3-... 139 2e-31
CR857590_1(CR857590|pid:none) Pongo abelii mRNA; cDNA DKFZp459M1... 139 2e-31
S44645(S44645;T16288)hypothetical protein F37A4.8 - Caenorhabdit... 135 4e-31
CR940347_91(CR940347|pid:none) Theileria annulata strain Ankara ... 138 4e-31
CP000387_1714(CP000387|pid:none) Streptococcus sanguinis SK36, c... 138 5e-31
CP000585_159(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 138 5e-31
AP007150_188(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 132 6e-31
CU633455_71(CU633455|pid:none) Podospora anserina genomic DNA ch... 132 6e-31
AB102721_1(AB102721|pid:none) Homo sapiens HELLS mRNA for lympho... 137 6e-31
AL929049_3(AL929049|pid:none) Zebrafish DNA sequence from clone ... 137 6e-31
AB102718_1(AB102718|pid:none) Homo sapiens HELLS mRNA for lympho... 137 6e-31
AX356104_1(AX356104|pid:none) Sequence 1 from Patent WO0190320. 137 6e-31
AB074174_1(AB074174|pid:none) Homo sapiens primary neuroblastoma... 137 6e-31
AM920435_725(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 137 6e-31
AK001201_1(AK001201|pid:none) Homo sapiens cDNA FLJ10339 fis, cl... 137 6e-31
(Q76H81) RecName: Full=Lymphoid-specific helicase; EC=3... 137 6e-31
AB102719_1(AB102719|pid:none) Homo sapiens HELLS mRNA for lympho... 137 6e-31
BC168798_1(BC168798|pid:none) Xenopus tropicalis cDNA clone MGC:... 137 6e-31
AB113249_1(AB113249|pid:none) Homo sapiens HELLS mRNA for lympho... 137 6e-31
AB102723_1(AB102723|pid:none) Homo sapiens HELLS mRNA for lympho... 137 6e-31
(Q7ZU90) RecName: Full=Chromodomain-helicase-DNA-binding protein... 137 8e-31
BC059235_1(BC059235|pid:none) Mus musculus INO80 complex homolog... 137 1e-30
AB033085_1(AB033085|pid:none) Homo sapiens mRNA for KIAA1259 pro... 137 1e-30
AM910987_113(AM910987|pid:none) Plasmodium knowlesi strain H chr... 137 1e-30
(Q9ULG1) RecName: Full=Putative DNA helicase INO80 complex homol... 137 1e-30
AK017912_1(AK017912|pid:none) Mus musculus adult male thymus cDN... 137 1e-30
AK129317_1(AK129317|pid:none) Mus musculus premature mRNA for mK... 137 1e-30
AY927849_1(AY927849|pid:none) Arabidopsis thaliana SPLAYED splic... 121 1e-30
BC020056_1(BC020056|pid:none) Mus musculus helicase, lymphoid sp... 136 1e-30
BC029381_1(BC029381|pid:none) Homo sapiens helicase, lymphoid-sp... 136 1e-30
AK013266_1(AK013266|pid:none) Mus musculus 10, 11 days embryo wh... 136 1e-30
JC4666(JC4666)lymphocyte specific helicase - mouse 136 1e-30
AL021171_1(AL021171|pid:none) Caenorhabditis elegans Fosmid H04D... 136 2e-30
T23046(T23046;T23695)hypothetical protein M03C11.8 - Caenorhabdi... 136 2e-30
BX470255_2(BX470255|pid:none) Zebrafish DNA sequence from clone ... 136 2e-30
CT005272_536(CT005272|pid:none) Leishmania major strain Friedlin... 136 2e-30
BC133097_1(BC133097|pid:none) Danio rerio SWI/SNF related, matri... 136 2e-30
BX538033_1(BX538033|pid:none) Homo sapiens mRNA; cDNA DKFZp686J0... 135 2e-30
CR382131_364(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 135 2e-30
CR382126_197(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 125 3e-30
AF325921_1(AF325921|pid:none) Mus musculus DNA-dependent ATPase ... 135 3e-30
AK039811_1(AK039811|pid:none) Mus musculus 0 day neonate thymus ... 135 3e-30
AK316444_1(AK316444|pid:none) Homo sapiens cDNA, FLJ79343 comple... 135 3e-30
BC153225_1(BC153225|pid:none) Bos taurus SWI/SNF related, matrix... 135 3e-30
CR382126_1059(CR382126|pid:none) Kluyveromyces lactis strain NRR... 135 3e-30
(Q91ZW3) RecName: Full=SWI/SNF-related matrix-associated actin-d... 135 3e-30
AE014134_1792(AE014134|pid:none) Drosophila melanogaster chromos... 135 3e-30
AE016819_194(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 135 4e-30
CR382126_291(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 135 4e-30
AE017348_138(AE017348|pid:none) Cryptococcus neoformans var. neo... 135 4e-30
AC012647_4(AC012647|pid:none) Trypanosoma brucei chromosome 2 cl... 122 5e-30
AF292095_1(AF292095|pid:none) Xenopus laevis imitation switch IS... 134 5e-30
BC100394_1(BC100394|pid:none) Mus musculus helicase, lymphoid sp... 134 5e-30
FN392320_922(FN392320|pid:none) Pichia pastoris GS115 chromosome... 134 5e-30
AP007151_1229(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 134 5e-30
(Q8RWY3) RecName: Full=Putative chromatin-remodeling complex ATP... 132 7e-30
AY091030_1(AY091030|pid:none) Arabidopsis thaliana putative ATPa... 131 7e-30
CP000496_810(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 134 7e-30
(Q0UG82) RecName: Full=Putative DNA helicase INO80; EC=... 134 7e-30
GN099095_1(GN099095|pid:none) Sequence 3876 from Patent WO200903... 134 7e-30
AM920427_717(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 134 9e-30
(P38144) RecName: Full=ISWI chromatin-remodeling complex ATPase ... 134 9e-30
S46122(S46122)SNF2 protein homolog YBR245c - yeast (Saccharomyce... 134 9e-30
(A1C9W6) RecName: Full=Putative DNA helicase ino80; EC=... 133 1e-29
CR382131_97(CR382131|pid:none) Yarrowia lipolytica strain CLIB12... 133 1e-29
FN392319_386(FN392319|pid:none) Pichia pastoris GS115 chromosome... 133 1e-29
CU928180_235(CU928180|pid:none) Kluyveromyces thermotolerans str... 133 1e-29
(A1CZE5) RecName: Full=Putative DNA helicase ino80; EC=... 133 1e-29
BC080870_1(BC080870|pid:none) Xenopus tropicalis SWI/SNF related... 133 2e-29
(A7EQA8) RecName: Full=Putative DNA helicase INO80; EC=... 133 2e-29
(A2R9H9) RecName: Full=Putative DNA helicase ino80; EC=... 133 2e-29
AX528672_1(AX528672|pid:none) Sequence 5 from Patent WO0246443. 133 2e-29
AY815356_1(AY815356|pid:none) Schistosoma japonicum SJCHGC06070 ... 133 2e-29
(Q5BAZ5) RecName: Full=Putative DNA helicase ino80; EC=... 133 2e-29
AM270388_18(AM270388|pid:none) Aspergillus niger contig An17c006... 122 2e-29
AM920436_1738(AM920436|pid:none) Penicillium chrysogenum Wiscons... 125 2e-29
EU730899_1(EU730899|pid:none) Brachypodium distachyon clone BAC ... 132 2e-29
(P53115) RecName: Full=Putative DNA helicase INO80; EC=... 132 2e-29
Z48618_5(Z48618|pid:none) S.cerevisiae genes for RAD54, ACE1(CUP... 132 2e-29
BX538352_70(BX538352|pid:none) Cryptosporidium parvum chromosome... 127 3e-29
FM992690_580(FM992690|pid:none) Candida dubliniensis CD36 chromo... 128 3e-29
AY069786_1(AY069786|pid:none) Drosophila melanogaster SD02886 fu... 132 4e-29
(Q9VDY1) RecName: Full=Putative DNA helicase Ino80; Sho... 132 4e-29
FN392322_123(FN392322|pid:none) Pichia pastoris GS115 chromosome... 131 4e-29
CP001142_300(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 131 5e-29
BC143954_1(BC143954|pid:none) Homo sapiens SWI/SNF related, matr... 131 5e-29
(P28370) RecName: Full=Probable global transcription activator S... 131 5e-29
AL022577_4(AL022577|pid:none) Human DNA sequence from clone RP3-... 131 5e-29
(Q74Z27) RecName: Full=Putative DNA helicase INO80; EC=... 131 5e-29
(Q6BGY8) RecName: Full=Putative DNA helicase INO80; EC=... 131 5e-29
CP000496_494(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 131 5e-29
M89907_1(M89907|pid:none) Human global transcription activator h... 131 5e-29
CU928179_909(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 131 6e-29
(Q4IL82) RecName: Full=Putative DNA helicase INO80; EC=... 131 6e-29
BT042191_1(BT042191|pid:none) Zea mays full-length cDNA clone ZM... 131 6e-29
CR380958_504(CR380958|pid:none) Candida glabrata strain CBS138 c... 131 6e-29
BC124094_1(BC124094|pid:none) Danio rerio helicase, lymphoid-spe... 131 6e-29
(P22082) RecName: Full=Transcription regulatory protein SNF2; ... 121 7e-29
DQ402511_1(DQ402511|pid:none) Bombyx mori CHD1 (CHD1) mRNA, comp... 126 7e-29
CU928174_486(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 130 8e-29
AC011806_3(AC011806|pid:none) Genomic Sequence For Oryza sativa ... 130 8e-29
FJ515838_1(FJ515838|pid:none) Homo sapiens isolate CHD2-VI-T chr... 119 9e-29
AF006514_1(AF006514|pid:none) Homo sapiens CHD2 mRNA, complete c... 119 9e-29
(A7TJI3) RecName: Full=Putative DNA helicase INO80; EC=... 130 9e-29
AK292850_1(AK292850|pid:none) Homo sapiens cDNA FLJ76689 partial... 119 9e-29
CP001323_433(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 130 1e-28
AX528684_1(AX528684|pid:none) Sequence 17 from Patent WO0246443. 130 1e-28
(Q872I5) RecName: Full=Putative DNA helicase ino-80; EC... 130 1e-28
BX294010_4(BX294010|pid:none) Neurospora crassa DNA linkage grou... 130 1e-28
CP000498_251(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 126 1e-28
CR382129_11(CR382129|pid:none) Yarrowia lipolytica strain CLIB12... 130 1e-28
CU928180_627(CU928180|pid:none) Kluyveromyces thermotolerans str... 130 1e-28
CR380949_58(CR380949|pid:none) Candida glabrata strain CBS138 ch... 130 1e-28
CP000500_338(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 127 2e-28
BC077794_1(BC077794|pid:none) Xenopus laevis helicase, lymphoid-... 129 2e-28
DQ206560_1(DQ206560|pid:none) Leucosolenia sp. AR-2003 isolate T... 114 2e-28
(Q8RXS6) RecName: Full=DNA helicase INO80 complex homolog 1; ... 129 2e-28
AY080695_1(AY080695|pid:none) Arabidopsis thaliana putative heli... 129 2e-28
FN392320_1198(FN392320|pid:none) Pichia pastoris GS115 chromosom... 124 3e-28
AE016818_715(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 128 4e-28
(Q08773) RecName: Full=ISWI chromatin-remodeling complex ATPase ... 128 4e-28
AE016820_492(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 128 5e-28
(Q4PGL2) RecName: Full=Putative DNA helicase INO80; EC=... 128 5e-28
FN357294_49(FN357294|pid:none) Schistosoma mansoni genome sequen... 128 5e-28
CP001575_509(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 128 5e-28
CR382139_133(CR382139|pid:none) Debaryomyces hansenii strain CBS... 127 6e-28
T23056(T23056)chromodomain helicase H06O01.2 - Caenorhabditis el... 114 6e-28
Z92970_2(Z92970|pid:none) Caenorhabditis elegans Fosmid H06O01, ... 114 6e-28
FN392320_97(FN392320|pid:none) Pichia pastoris GS115 chromosome ... 127 6e-28
(O14139) RecName: Full=Chromodomain helicase hrp3; EC=3... 127 7e-28
(Q3B7N1) RecName: Full=Chromodomain-helicase-DNA-binding protein... 127 7e-28
AE001362_151(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 115 8e-28
(O14646) RecName: Full=Chromodomain-helicase-DNA-binding protein... 120 8e-28
BC115822_1(BC115822|pid:none) Mus musculus chromodomain helicase... 120 8e-28
(P40201) RecName: Full=Chromodomain-helicase-DNA-binding protein... 120 8e-28
BC117134_1(BC117134|pid:none) Homo sapiens chromodomain helicase... 120 8e-28
FM992689_189(FM992689|pid:none) Candida dubliniensis CD36 chromo... 125 8e-28
AL844862_2(AL844862|pid:none) Mouse DNA sequence from clone RP23... 112 8e-28
AK140386_1(AK140386|pid:none) Mus musculus 4 days neonate thymus... 120 8e-28
AJ719817_1(AJ719817|pid:none) Gallus gallus mRNA for hypothetica... 111 8e-28
AK079035_1(AK079035|pid:none) Mus musculus adult male epididymis... 127 9e-28
FN357585_11(FN357585|pid:none) Schistosoma mansoni genome sequen... 127 9e-28
CU928171_608(CU928171|pid:none) Kluyveromyces thermotolerans str... 127 9e-28
CU928173_103(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 127 9e-28
FM992695_429(FM992695|pid:none) Candida dubliniensis CD36 chromo... 122 1e-27
AL512768_1(AL512768|pid:none) Homo sapiens mRNA; cDNA DKFZp434A1... 127 1e-27
(Q9US25) RecName: Full=Chromodomain helicase hrp1; EC=3... 127 1e-27
BC057567_1(BC057567|pid:none) Mus musculus chromodomain helicase... 127 1e-27
(Q5KHM0) RecName: Full=Putative DNA helicase INO80; EC=... 126 1e-27
AF181828_1(AF181828|pid:none) Nymphicus hollandicus chromosome Z... 119 1e-27
(O14148) RecName: Full=Putative DNA helicase ino80; EC=... 126 1e-27
AL391737_32(AL391737|pid:none) chromosome I of strain GB-M1 of E... 126 1e-27
T38489(T38489) helicase - fission yeast (Schizosaccharomyces pom... 126 1e-27
FM992690_238(FM992690|pid:none) Candida dubliniensis CD36 chromo... 124 2e-27
AK297135_1(AK297135|pid:none) Homo sapiens cDNA FLJ55722 complet... 126 2e-27
AX876540_1(AX876540|pid:none) Sequence 11445 from Patent EP10746... 126 2e-27
AK001342_1(AK001342|pid:none) Homo sapiens cDNA FLJ10480 fis, cl... 126 2e-27
EF560738_1(EF560738|pid:none) Homo sapiens clone DKFZp686J1099 C... 126 2e-27
AM433721_7(AM433721|pid:none) Vitis vinifera contig VV78X233805.... 126 2e-27
AL356378_7(AL356378|pid:none) Human DNA sequence from clone RP11... 126 2e-27
CU633872_184(CU633872|pid:none) Podospora anserina genomic DNA c... 122 2e-27
AY303939_1(AY303939|pid:none) Pichia angusta global transcriptio... 125 3e-27
(O94421) RecName: Full=SWI/SNF chromatin-remodeling complex subu... 123 3e-27
AL109850_1(AL109850|pid:none) S.pombe chromosome III cosmid c830. 114 3e-27
CP000502_77(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 122 3e-27
CP001575_88(CP001575|pid:none) Micromonas sp. RCC299 chromosome ... 125 3e-27
AE017351_304(AE017351|pid:none) Cryptococcus neoformans var. neo... 125 3e-27
BT011071_1(BT011071|pid:none) Drosophila melanogaster SD21488 fu... 121 4e-27
AY268943_1(AY268943|pid:none) Tetrahymena thermophila strain Cu4... 108 4e-27
AY095050_1(AY095050|pid:none) Drosophila melanogaster LD39323 fu... 121 4e-27
AK023990_1(AK023990|pid:none) Homo sapiens cDNA FLJ13928 fis, cl... 125 4e-27
CR940347_289(CR940347|pid:none) Theileria annulata strain Ankara... 125 4e-27
AE017351_199(AE017351|pid:none) Cryptococcus neoformans var. neo... 125 4e-27
CR382125_177(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 124 7e-27
CU928171_378(CU928171|pid:none) Kluyveromyces thermotolerans str... 124 7e-27
CR380953_373(CR380953|pid:none) Candida glabrata strain CBS138 c... 124 1e-26
AL137080_15(AL137080|pid:none) Arabidopsis thaliana DNA chromoso... 113 1e-26
AK027631_1(AK027631|pid:none) Homo sapiens cDNA FLJ14725 fis, cl... 123 1e-26
(Q9UTN6) RecName: Full=Chromatin structure-remodeling complex su... 123 1e-26
CU633901_345(CU633901|pid:none) Podospora anserina genomic DNA c... 123 1e-26
AE016819_795(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 122 1e-26
AB254883_1(AB254883|pid:none) Eudromia elegans CHD mRNA for chro... 123 2e-26
T33152(T33152)hypothetical protein T04D1.4 - Caenorhabditis eleg... 123 2e-26
AK221299_1(AK221299|pid:none) Arabidopsis thaliana mRNA for pseu... 123 2e-26
FN357317_37(FN357317|pid:none) Schistosoma mansoni genome sequen... 123 2e-26
CP001358_1521(CP001358|pid:none) Desulfovibrio desulfuricans sub... 110 2e-26
AM270162_16(AM270162|pid:none) Aspergillus niger contig An08c007... 122 2e-26
BT067025_1(BT067025|pid:none) Zea mays full-length cDNA clone ZM... 122 2e-26
BC073289_1(BC073289|pid:none) Xenopus laevis MGC80667 protein, m... 107 2e-26
BX649606_44(BX649606|pid:none) Aspergillus fumigatus BAC pilot p... 122 3e-26
AE016817_302(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 122 3e-26
AL713629_19(AL713629|pid:none) Aspergillus fumigatus BAC AFA5C11. 122 3e-26
AM180252_168(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 110 3e-26
AF004397_1(AF004397|pid:none) Gallus gallus chromo-helicase-DNA-... 122 4e-26
A42091(A42091) transcription activator SNF2/SWI2 homolog brm - f... 116 4e-26
AE014296_2753(AE014296|pid:none) Drosophila melanogaster chromos... 116 4e-26
AF181824_1(AF181824|pid:none) Aegolius funereus chromosome W chr... 121 5e-26
(P32597) RecName: Full=Nuclear protein STH1/NPS1; EC=3.... 121 5e-26
CP000113_5215(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 108 5e-26
CP000527_1140(CP000527|pid:none) Desulfovibrio vulgaris subsp. v... 109 5e-26
CP001197_784(CP001197|pid:none) Desulfovibrio vulgaris str. 'Miy... 111 5e-26
AF230280_1(AF230280|pid:none) Caenorhabditis elegans SWI2/SNF2-l... 121 6e-26
AB018119_14(AB018119|pid:none) Arabidopsis thaliana genomic DNA,... 120 8e-26
AP003227_41(AP003227|pid:none) Oryza sativa Japonica Group genom... 120 8e-26
CP001326_123(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 120 8e-26
AF308445_1(AF308445|pid:none) Caenorhabditis elegans LET-418 (le... 120 1e-25
CP000891_1493(CP000891|pid:none) Shewanella baltica OS195, compl... 120 1e-25
AF059276_1(AF059276|pid:none) Struthio camelus chromo-helicase-D... 120 1e-25
FN357499_5(FN357499|pid:none) Schistosoma mansoni genome sequenc... 117 1e-25
CP000563_1452(CP000563|pid:none) Shewanella baltica OS155, compl... 120 1e-25
(Q9S775) RecName: Full=CHD3-type chromatin-remodeling factor PIC... 108 1e-25
B84645(B84645)hypothetical protein At2g25170 [imported] - Arabid... 108 1e-25
AP007169_330(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 119 2e-25
(Q22516) RecName: Full=Chromodomain-helicase-DNA-binding protein... 119 2e-25
CU928176_687(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 119 2e-25
U64598_15(U64598|pid:none) Caenorhabditis elegans cosmid C52B9, ... 119 2e-25
CR940347_357(CR940347|pid:none) Theileria annulata strain Ankara... 114 2e-25
(P43610) RecName: Full=Uncharacterized ATP-dependent helicase YF... 119 2e-25
AY333120_1(AY333120|pid:none) Arabidopsis arenosa Swi2/Snf2-rela... 119 2e-25
AE014134_63(AE014134|pid:none) Drosophila melanogaster chromosom... 119 3e-25
AE014134_62(AE014134|pid:none) Drosophila melanogaster chromosom... 119 3e-25
AF461813_1(AF461813|pid:none) Zea mays chromatin complex subunit... 119 3e-25
CP000444_2666(CP000444|pid:none) Shewanella sp. MR-7, complete g... 118 5e-25
AP008213_1862(AP008213|pid:none) Oryza sativa (japonica cultivar... 118 5e-25
CP000446_2609(CP000446|pid:none) Shewanella sp. MR-4, complete g... 118 5e-25
AE014299_1619(AE014299|pid:none) Shewanella oneidensis MR-1, com... 118 5e-25
AP005419_19(AP005419|pid:none) Oryza sativa Japonica Group genom... 118 5e-25
CU928165_133(CU928165|pid:none) Kluyveromyces thermotolerans str... 118 5e-25
CP001326_138(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 117 7e-25
CU633900_1017(CU633900|pid:none) Podospora anserina genomic DNA ... 117 7e-25
AB331397_1(AB331397|pid:none) Brassica rapa DDM1b gene for decre... 117 7e-25
AX528676_1(AX528676|pid:none) Sequence 9 from Patent WO0246443. 113 7e-25
AL117491_1(AL117491|pid:none) Homo sapiens mRNA; cDNA DKFZp434N2... 117 9e-25
AK153826_1(AK153826|pid:none) Mus musculus 2 days neonate thymus... 117 9e-25
CS300694_1(CS300694|pid:none) Sequence 202 from Patent EP1661986. 117 9e-25
AB007913_1(AB007913|pid:none) Homo sapiens mRNA for KIAA0444 pro... 117 9e-25
(Q14839) RecName: Full=Chromodomain-helicase-DNA-binding protein... 117 9e-25
BC046866_1(BC046866|pid:none) Xenopus laevis chromodomain helica... 117 9e-25
(Q6PDQ2) RecName: Full=Chromodomain-helicase-DNA-binding protein... 117 9e-25
AE017349_101(AE017349|pid:none) Cryptococcus neoformans var. neo... 117 9e-25
CP000681_1360(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 117 9e-25
AK220473_1(AK220473|pid:none) Mus musculus mRNA for mKIAA4075 pr... 117 9e-25
(Q8TDI0) RecName: Full=Chromodomain-helicase-DNA-binding protein... 117 9e-25
AP007171_293(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 117 1e-24
AB284258_1(AB284258|pid:none) Brassica rapa DDM1 gene for decrea... 117 1e-24
BC133719_1(BC133719|pid:none) Xenopus tropicalis chromodomain he... 117 1e-24
AM910986_40(AM910986|pid:none) Plasmodium knowlesi strain H chro... 111 1e-24
AP007161_494(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 116 2e-24
AM270168_148(AM270168|pid:none) Aspergillus niger contig An08c01... 116 2e-24
AC141111_16(AC141111|pid:none) Medicago truncatula clone mth2-20... 103 2e-24
AL110281_1(AL110281|pid:none) Homo sapiens mRNA; cDNA DKFZp434K2... 116 2e-24
AP003727_27(AP003727|pid:none) Oryza sativa Japonica Group genom... 116 2e-24
AB016874_14(AB016874|pid:none) Arabidopsis thaliana genomic DNA,... 116 2e-24
AE014296_3433(AE014296|pid:none) Drosophila melanogaster chromos... 115 3e-24
AY217131_1(AY217131|pid:none) Taeniopygia guttata chromo-helicas... 115 3e-24
AF119716_1(AF119716|pid:none) Drosophila melanogaster dMi-2 prot... 115 3e-24
(Q6EVK6) RecName: Full=ATP-dependent helicase BRM; Shor... 103 3e-24
AM920431_481(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 115 3e-24
AM910993_249(AM910993|pid:none) Plasmodium knowlesi strain H chr... 115 3e-24
AY643746_1(AY643746|pid:none) Rattus norvegicus SWI/SNF-related ... 108 4e-24
CR954217_197(CR954217|pid:none) Ostreococcus tauri strain OTTH05... 115 4e-24
AY062186_1(AY062186|pid:none) Oryza sativa chromatin-remodeling ... 106 5e-24
AP005919_4(AP005919|pid:none) Oryza sativa Japonica Group genomi... 106 5e-24
AP008212_463(AP008212|pid:none) Oryza sativa (japonica cultivar-... 106 5e-24
BC005038_1(BC005038|pid:none) Homo sapiens chromodomain helicase... 103 5e-24
U91543_1(U91543|pid:none) Homo sapiens zinc-finger helicase (hZF... 114 8e-24
CR382133_515(CR382133|pid:none) Debaryomyces hansenii strain CBS... 114 8e-24
AY903245_1(AY903245|pid:none) Rattus norvegicus strain WHD chrom... 114 8e-24
AL596125_1(AL596125|pid:none) Mouse DNA sequence from clone RP23... 114 8e-24
(Q12873) RecName: Full=Chromodomain-helicase-DNA-binding protein... 114 8e-24
AY903247_1(AY903247|pid:none) Rattus norvegicus strain SHRSP chr... 114 8e-24
BC156472_1(BC156472|pid:none) Synthetic construct Homo sapiens c... 114 8e-24
AF007780_1(AF007780|pid:none) Drosophila melanogaster CHD3 mRNA,... 114 8e-24
AL596125_2(AL596125|pid:none) Mouse DNA sequence from clone RP23... 114 8e-24
AL928727_1(AL928727|pid:none) Zebrafish DNA sequence from clone ... 108 8e-24
AL590430_1(AL590430|pid:none) Mouse DNA sequence from clone RP23... 114 1e-23
(B0R0I6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 114 1e-23
AL590430_2(AL590430|pid:none) Mouse DNA sequence from clone RP23... 114 1e-23
(Q9H6D4) RecName: Full=Chromodomain-helicase-DNA-binding protein... 114 1e-23
AL928674_21(AL928674|pid:none) Zebrafish DNA sequence from clone... 114 1e-23
BC150806_1(BC150806|pid:none) Mus musculus chromodomain helicase... 114 1e-23
CP001157_1745(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 114 1e-23
D14316_1(D14316|pid:none) Gallus gallus mRNA for delta-crystalli... 114 1e-23
AB037756_1(AB037756|pid:none) Homo sapiens mRNA for KIAA1335 pro... 114 1e-23
BC168549_1(BC168549|pid:none) Xenopus tropicalis cDNA clone MGC:... 113 1e-23
CP000388_2581(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 113 1e-23
CR954201_555(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 113 1e-23
(B5DE69) RecName: Full=Chromodomain-helicase-DNA-binding protein... 113 1e-23
CP000083_3297(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 113 1e-23
AB037837_1(AB037837|pid:none) Homo sapiens mRNA for KIAA1416 pro... 113 2e-23
(A2AJK6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 113 2e-23
CP000843_38(CP000843|pid:none) Acaryochloris marina MBIC11017 pl... 113 2e-23
CR954202_487(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 112 2e-23
(Q8TBR9) RecName: Full=Chromodomain-helicase-DNA-binding protein... 112 2e-23
FJ427399_1(FJ427399|pid:none) Triticum turgidum clone BAC 738D05... 112 2e-23
BC156439_1(BC156439|pid:none) Synthetic construct Homo sapiens c... 112 2e-23
AK066228_1(AK066228|pid:none) Oryza sativa Japonica Group cDNA c... 112 2e-23
AK296937_1(AK296937|pid:none) Homo sapiens cDNA FLJ59330 complet... 112 2e-23
(Q9JIX5) RecName: Full=Chromodomain-helicase-DNA-binding protein... 112 2e-23
(Q09XV5) RecName: Full=Chromodomain-helicase-DNA-binding protein... 112 2e-23
AB046784_1(AB046784|pid:none) Homo sapiens mRNA for KIAA1564 pro... 112 2e-23
BC168553_1(BC168553|pid:none) Xenopus tropicalis chromodomain he... 112 3e-23
CP000113_7101(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 105 3e-23
AY647157_1(AY647157|pid:none) Homo sapiens KISH2 (KISH2) mRNA, c... 112 4e-23
DQ333316_1(DQ333316|pid:none) Homo sapiens PRIC320 isoform 1 mRN... 112 4e-23
AK296955_1(AK296955|pid:none) Homo sapiens cDNA FLJ59295 partial... 112 4e-23
(Q3L8U1) RecName: Full=Chromodomain-helicase-DNA-binding protein... 112 4e-23
(Q03468) RecName: Full=DNA excision repair protein ERCC-6; ... 112 4e-23
EU730901_22(EU730901|pid:none) Brachypodium distachyon clone BAC... 112 4e-23
(Q8BYH8) RecName: Full=Chromodomain-helicase-DNA-binding protein... 112 4e-23
CP000148_986(CP000148|pid:none) Geobacter metallireducens GS-15,... 112 4e-23
AK303022_1(AK303022|pid:none) Homo sapiens cDNA FLJ57242 complet... 112 4e-23
CP000447_1290(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 112 4e-23
DQ059482_1(DQ059482|pid:none) Homo sapiens ciprofibrate bound pr... 112 4e-23
EU430758_1(EU430758|pid:none) Homo sapiens SMARCA4 isoform 4 mRN... 111 5e-23
EU430756_1(EU430756|pid:none) Homo sapiens SMARCA4 isoform 3 mRN... 111 5e-23
AF254822_1(AF254822|pid:none) Homo sapiens SMARCA4 isoform (SMAR... 111 5e-23
BC136644_1(BC136644|pid:none) Homo sapiens SWI/SNF related, matr... 111 5e-23
I53078(I53078) homeotic gene regulator - mouse (fragment) &S681... 111 5e-23
AK160825_1(AK160825|pid:none) Mus musculus 10 days embryo whole ... 111 5e-23
AK147047_1(AK147047|pid:none) Mus musculus 17 days embryo kidney... 111 5e-23
AK303352_1(AK303352|pid:none) Homo sapiens cDNA FLJ60382 complet... 111 5e-23
EU430757_1(EU430757|pid:none) Homo sapiens SMARCA4 isoform 2 mRN... 111 5e-23
BC060229_1(BC060229|pid:none) Mus musculus SWI/SNF related, matr... 111 5e-23
D26156_1(D26156|pid:none) Homo sapiens mRNA for transcriptional ... 111 5e-23
AK299761_1(AK299761|pid:none) Homo sapiens cDNA FLJ60344 complet... 111 5e-23
(P51532) RecName: Full=Probable global transcription activator S... 111 5e-23
BC153216_1(BC153216|pid:none) Bos taurus SWI/SNF related, matrix... 111 5e-23
AJ504723_1(AJ504723|pid:none) Rattus norvegicus partial mRNA for... 111 5e-23
AE001437_3384(AE001437|pid:none) Clostridium acetobutylicum ATCC... 111 5e-23
CT005264_212(CT005264|pid:none) Leishmania major strain Friedlin... 111 5e-23
BX294149_120(BX294149|pid:none) Rhodopirellula baltica SH 1 comp... 111 5e-23
AK166837_1(AK166837|pid:none) Mus musculus blastocyst blastocyst... 111 5e-23
AC006127_1(AC006127|pid:none) Homo sapiens chromosome 19, cosmid... 111 5e-23
CU928169_543(CU928169|pid:none) Kluyveromyces thermotolerans str... 109 6e-23
BX294133_5(BX294133|pid:none) Rhodopirellula baltica SH 1 comple... 111 6e-23
(Q9UR24) RecName: Full=DNA repair protein rhp26; AltName: Full=R... 111 6e-23
AM452412_1(AM452412|pid:none) Vitis vinifera contig VV78X221725.... 111 6e-23
FN392320_1272(FN392320|pid:none) Pichia pastoris GS115 chromosom... 108 8e-23
CP000302_2211(CP000302|pid:none) Shewanella denitrificans OS217,... 110 8e-23
AY205256_1(AY205256|pid:none) Danio rerio brahma protein-like pr... 110 8e-23
BA000008_847(BA000008|pid:none) Chlamydophila pneumoniae J138 ge... 110 8e-23
CP000089_3839(CP000089|pid:none) Dechloromonas aromatica RCB, co... 107 1e-22
EF540321_7(EF540321|pid:none) Triticum turgidum overlapping clon... 110 1e-22
CP000581_576(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 110 1e-22
AC141111_14(AC141111|pid:none) Medicago truncatula clone mth2-20... 110 1e-22
CP000949_1662(CP000949|pid:none) Pseudomonas putida W619, comple... 110 1e-22
AY485644_6(AY485644|pid:none) Triticum monococcum phosphatidylse... 110 1e-22
(P40352) RecName: Full=DNA repair and recombination protein RAD2... 110 1e-22
BC167234_1(BC167234|pid:none) Synthetic construct Mus musculus c... 110 1e-22
AF459085_1(AF459085|pid:none) Hordeum vulgare SNF2P (Snf2P) gene... 110 1e-22
AY485643_5(AY485643|pid:none) Hordeum vulgare subsp. vulgare BAC... 110 1e-22
AK048742_1(AK048742|pid:none) Mus musculus 0 day neonate cerebel... 98 1e-22
CP000498_551(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 110 1e-22
AM494962_161(AM494962|pid:none) Leishmania braziliensis chromoso... 110 1e-22
AP008210_1591(AP008210|pid:none) Oryza sativa (japonica cultivar... 110 1e-22
AE015928_3352(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 103 2e-22
CP000744_4665(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 107 2e-22
CR762493_3(CR762493|pid:none) Zebrafish DNA sequence from clone ... 109 2e-22
CR382132_1273(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 109 2e-22
CP000393_1293(CP000393|pid:none) Trichodesmium erythraeum IMS101... 101 2e-22
FN392320_672(FN392320|pid:none) Pichia pastoris GS115 chromosome... 109 2e-22
CR380954_234(CR380954|pid:none) Candida glabrata strain CBS138 c... 109 2e-22
S39059(S39059)protein BRG1 - human 109 2e-22
BC142881_1(BC142881|pid:none) Danio rerio SWI/SNF related, matri... 109 2e-22
CP000592_288(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 109 2e-22
AY699010_1(AY699010|pid:none) Arabidopsis thaliana SWI2/SNF2-lik... 109 2e-22
CP000804_3239(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 109 2e-22
AE015450_702(AE015450|pid:none) Mycoplasma gallisepticum strain ... 100 3e-22
CP000438_4328(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 108 3e-22
FN392320_474(FN392320|pid:none) Pichia pastoris GS115 chromosome... 108 3e-22
CR380955_66(CR380955|pid:none) Candida glabrata strain CBS138 ch... 108 3e-22
CR954247_39(CR954247|pid:none) Pseudoalteromonas haloplanktis st... 108 3e-22
BX908798_375(BX908798|pid:none) Parachlamydia-related symbiont U... 100 4e-22
X91638_1(X91638|pid:none) G.gallus mRNA for BRM protein. 108 4e-22
AE017354_716(AE017354|pid:none) Legionella pneumophila subsp. pn... 108 4e-22
BC151849_1(BC151849|pid:none) Synthetic construct Homo sapiens c... 108 4e-22
CR382125_983(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 108 5e-22
AK299683_1(AK299683|pid:none) Homo sapiens cDNA FLJ53181 partial... 108 5e-22
AK135871_1(AK135871|pid:none) Mus musculus in vitro fertilized e... 108 5e-22
AK296373_1(AK296373|pid:none) Homo sapiens cDNA FLJ61591 partial... 108 5e-22
BC142521_1(BC142521|pid:none) Bos taurus SWI/SNF related, matrix... 108 5e-22
D26155_1(D26155|pid:none) Homo sapiens mRNA for transcriptional ... 108 5e-22
BC075641_1(BC075641|pid:none) Mus musculus SWI/SNF related, matr... 108 5e-22
AL138755_5(AL138755|pid:none) Human DNA sequence from clone RP11... 108 5e-22
BC056199_1(BC056199|pid:none) Mus musculus SWI/SNF related, matr... 108 5e-22
AM746676_2993(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 105 7e-22
CP000227_4946(CP000227|pid:none) Bacillus cereus Q1, complete ge... 101 7e-22
CP001407_5159(CP001407|pid:none) Bacillus cereus 03BB102, comple... 100 7e-22
AE016879_5077(AE016879|pid:none) Bacillus anthracis str. Ames, c... 100 7e-22
CP001087_4635(CP001087|pid:none) Desulfobacterium autotrophicum ... 107 7e-22
AL590451_42(AL590451|pid:none) chromosome IX of strain GB-M1 of ... 107 9e-22
AE001273_725(AE001273|pid:none) Chlamydia trachomatis D/UW-3/CX,... 107 9e-22
CP000051_737(CP000051|pid:none) Chlamydia trachomatis A/HAR-13, ... 107 9e-22
CT005253_88(CT005253|pid:none) Leishmania major strain Friedlin,... 107 9e-22
AM270143_13(AM270143|pid:none) Aspergillus niger contig An07c026... 107 9e-22

>AP008215_745(AP008215|pid:none) Oryza sativa (japonica
cultivar-group) genomic DNA, chromosome 9.
Length = 811

Score = 192 bits (487), Expect = 3e-47
Identities = 124/385 (32%), Positives = 199/385 (51%), Gaps = 13/385 (3%)
Frame = +1

Query: 118 PSLSIVRYYGNXXXXXXXXXXXXXXXPGKDFNVILTTYNLLFANNDRGFLKRFDYSFLIL 297
PS++ + Y+G+ G DF +I+T+Y + A +D L + + ++I+
Sbjct: 354 PSMTGLIYHGDKAARAEIRRKFMPKTTGPDFPLIVTSYEM--AMSDAKHLAHYKWKYVIV 411

Query: 298 DEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFGSVKKDNY 477
DE +KNS + + ++ ++LLLTGTPLQNNL ELWSLLNF++P IF S ++
Sbjct: 412 DEGHRLKNSKCLLLRELKRLPMDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSHQEFES 471

Query: 478 LLNQLLEYNGDDCDSA--------ITRMKKILSPFILRRLKSTVSKELKPKIEHVEICKL 633
+ + ++ + + ++++ IL PF+LRR+K V L K E + +
Sbjct: 472 WFDFSAKGGEEEQEDSEEKRKVDVVSKLHAILRPFLLRRMKEDVEHMLPRKKEIIIYANM 531

Query: 634 PKFQDETYKNIIERSKSQWXXXXXXXXXXXXXXXXXXXT----IIN*****QX*KEXXXX 801
Q + +++E++ Q+ ++N +
Sbjct: 532 TDHQKQIQNHLVEQTFDQYLHEKSEIGLYPPVEKLLEQCGKFQLLN-----RLLSLLLAR 586

Query: 802 KSKVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSS-KETIPVFLLS 978
K KVLIFSQ T+VLDI+E L+ G R+DGS + ER+ I F+ ++ +F+LS
Sbjct: 587 KHKVLIFSQWTKVLDIIEYYLETKGLQVCRIDGSVKLEERRRQIAEFNDLNSSMNIFILS 646

Query: 979 TNSGGLGINLTCANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIH 1158
T +GGLGINLT A+ I YD +NPQ+D QA DR HR+GQ R V +Y+L ++V+ I
Sbjct: 647 TRAGGLGINLTSADTCILYDSDWNPQMDLQAMDRCHRIGQTRPVHVYRLATSHSVEGRII 706

Query: 1159 ESANQKKKLNDNVLEEGTFNNAETK 1233
+ A K +L V+ +G F K
Sbjct: 707 KKAFGKLRLEHVVIGKGQFEQDRAK 731

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,732,180,980
Number of extensions: 30891058
Number of successful extensions: 86984
Number of sequences better than 10.0: 1739
Number of HSP's gapped: 85232
Number of HSP's successfully gapped: 3375
Length of query: 430
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 299
Effective length of database: 627,191,635
Effective search space: 187530298865
Effective search space used: 187530298865
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.74 gvh: 0.36 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U12133-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0