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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12128-1
Contig ID Contig-U12128-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Contig-U12128-1Q.Seq.d
ACAAGTACTTGAAAGTGTAAATGATGTGATTTGACAATCAATGTTGAATT
ATAACTATAGGCAGATAATGCACCATTGATTGTCAAATCACAACAAGTAC
TTGAAAGTGTAAATGATGGATTCTACGTTTACACTCGTTCAAACGGAATT
TCATGGTACCCACAAGGTAATCCTGAACTATATCCAACATTGTATGCAGT
GGTTCTAAAATCTTTAATGGATGCAATAAATACAGCAGGTTGGTCAATAA
TGTCAAATATTTCAACTTGGAATGATTTCATTGATTTTCAAGTTAATGCT
CAATTGAGCCAATCAATTAAATCAAAAACACCAATTAATAAAGAATTGAT
TGGTTTAGCATCAGTTGGTCTTGGTTATTATTGGGCACCAAAAGATGAAG
AATTAAATGATCTATATTCATTTAATGCTTTAACTGCCAATATCACTGAT
AACTGTTCATTACTTTGTCAAACTTATTTCGCATTGGCTGCATTTATCCA
AGGTGAACCATCATCTTCACAATTCATTGGAGTGGTAGTAAATAACTTAA
AGAATAAAATTCATATTCAAGGTAGAACAGCCTATATTAGTGATGATTCA
AGAGTTGGTCAATCAAATTCAAATATCTTAGATTTAACAAATTATGCTTC
CATTTTATTCTCTTTAAGAAAAGATCCTGATACTCAACCAATTTTATCGA
AAATGATTAATTTCATTAGTGTCGATGGCCAACTATCTCAAGTAATATTG
TCACAACAACGTCCTTATATTTTTGGTATATCTTCACAACAAGAAGCATT
ATCATTAATTTCAATTACATTCTATGATAAATCAAATAAAAATCAATCAC
CAAATCTTAAGTTTAAAGCTTATCAAAATCCAATAACAAAATCATCACCA
CCTCCACCAATCTTATTAGCATATAATTTCACAACAAATACTAGTGCAGA
AAATGTTGAAAAACAAATCCCATACTCTTCTTTAATTAGCAATAAAACGG
TTTTTTTCAGTTCCATTGGTAATGGCCAAGTTTCAGTTGCAGTTGGTATT
GATTATACACCAGTTAATATTCCAAATAAACCAATTTACAATGGATTTTA
TGTTGAGAAAATCATTAAAGATATTAGTGGTGTTGGTGTTAGCAGCGATA
ATAATATAATATATANANATATATANANAAATAATAATAATA--------
--ACTCATATTACAACATCACCATTACCAATAGGTGGAGGTGGTAGTCAA
GTTGATAATGGAAATAAATTTTTTACAGATGGATGGCCACTTGGTGAACC
AACTTCAACACCTCAAATTAGTAACAATAACAATGGCATAGCTCAATCTG
GTGAGGTTTTCTTTTCACAATTTGTTTCAGCTCAACAACCTTCATCAATT
TCTGGTTCAAATAAAATACCGTCAGTTTCAAGTACAAGTAATAATTTAAA
TAATAATAATAACAACAATATTAATAATAGTAATTGTAGTAGTTTTTCAT
CAACATCATCAATATTACCACCATTAATAAATAGCTCTGGTATGATTCCA
CAAGCATCTTATCACTCTTCAAACTTTTTCGATCAATCACCATTATCACA
ATCATCGGCATTCAATGATTTTGGTCCACCAACCCCTTCAATGTATCATA
TGTCTTCAAGTAACCCTGGAACATTTTTAAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATCCTCGTGAATT
TTATCGTGGTCAAGAAGTAATGGTAATTTTATCAGTTACAGTTCCTGATT
TTATGAATGATGTTTTCATTGAAGATCCAGCAAGTGGTGGTATAGATCCA
ATTGATAATAACATTGATAATAGTGGTTCAGGTTCAAACCCAATACCTTA
TCAACGTCACTTAAAATTATCAAACTATCAAAATGATCTAATTAATAATG
ATCGTTTAATTTGGTTCTATCAACCATTTTCACATCGTGAAACTAGACGT
GATAAAGTTATTTACCAAGGTTCAAGTATTTCACCTGGTTCTTATCAAGT
TAGTTATAAATGTATTGTTACAAGTAAAGGTAGTTTCACTATGCCTCCAA
CAAAAGTATATTCTTCAACTCAACCTGAAGTATTTGGTACTTCAAATGGT
TTCACTTATACAGTTGTTTAAAAAATAATAATAATAATAAATAAACACTA
AAATTTTATAAATTAAATACTACAAAAAAAAAAAAAAA
Gap gap included
Contig length 2228
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 10
Number of EST 11
Link to clone list U12128
List of clone(s) 

est1=SLB220F,1,579
est2=AHK765Z,378,1155
est3=SFE675Z,400,1165
est4=AHM351Z,513,1193
est5=SSM617Z,1194,1901
est6=CHN831Z,1581,2176
est7=SHL856Z,1648,2190
est8=SHJ519Z,1649,2181
est9=SHG513Z,1665,2197
est10=SLB220Z,1702,2213
est11=SLC863Z,1732,2230
Translated Amino Acid sequence 
tst*kck*cdltinvel*l*ADNAPLIVKSQQVLESVNDGFYVYTRSNGISWYPQGNPEL
YPTLYAVVLKSLMDAINTAGWSIMSNISTWNDFIDFQVNAQLSQSIKSKTPINKELIGLA
SVGLGYYWAPKDEELNDLYSFNALTANITDNCSLLCQTYFALAAFIQGEPSSSQFIGVVV
NNLKNKIHIQGRTAYISDDSRVGQSNSNILDLTNYASILFSLRKDPDTQPILSKMINFIS
VDGQLSQVILSQQRPYIFGISSQQEALSLISITFYDKSNKNQSPNLKFKAYQNPITKSSP
PPPILLAYNFTTNTSAENVEKQIPYSSLISNKTVFFSSIGNGQVSVAVGIDYTPVNIPNK
PIYNGFYVEKIIKDISGVGVSSDNNIIYXXIXXNNNN---

---THITTSPLPIGGGGSQVDNGNKFFTDGWPLGEPTSTPQISNNNNGIAQSGEVFFSQF
VSAQQPSSISGSNKIPSVSSTSNNLNNNNNNNINNSNCSSFSSTSSILPPLINSSGMIPQ
ASYHSSNFFDQSPLSQSSAFNDFGPPTPSMYHMSSSNPGTFLNNNNNNNNNNNNNNNNNN
NNPREFYRGQEVMVILSVTVPDFMNDVFIEDPASGGIDPIDNNIDNSGSGSNPIPYQRHL
KLSNYQNDLINNDRLIWFYQPFSHRETRRDKVIYQGSSISPGSYQVSYKCIVTSKGSFTM
PPTKVYSSTQPEVFGTSNGFTYTVV*kiiiiinkh*nfin*ilqkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tst*kck*cdltinvel*l*ADNAPLIVKSQQVLESVNDGFYVYTRSNGISWYPQGNPEL
YPTLYAVVLKSLMDAINTAGWSIMSNISTWNDFIDFQVNAQLSQSIKSKTPINKELIGLA
SVGLGYYWAPKDEELNDLYSFNALTANITDNCSLLCQTYFALAAFIQGEPSSSQFIGVVV
NNLKNKIHIQGRTAYISDDSRVGQSNSNILDLTNYASILFSLRKDPDTQPILSKMINFIS
VDGQLSQVILSQQRPYIFGISSQQEALSLISITFYDKSNKNQSPNLKFKAYQNPITKSSP
PPPILLAYNFTTNTSAENVEKQIPYSSLISNKTVFFSSIGNGQVSVAVGIDYTPVNIPNK
PIYNGFYVEKIIKDISGVGVSSDNNIIYXXIXXNNNN---

---THITTSPLPIGGGGSQVDNGNKFFTDGWPLGEPTSTPQISNNNNGIAQSGEVFFSQF
VSAQQPSSISGSNKIPSVSSTSNNLNNNNNNNINNSNCSSFSSTSSILPPLINSSGMIPQ
ASYHSSNFFDQSPLSQSSAFNDFGPPTPSMYHMSSSNPGTFLNNNNNNNNNNNNNNNNNN
NNPREFYRGQEVMVILSVTVPDFMNDVFIEDPASGGIDPIDNNIDNSGSGSNPIPYQRHL
KLSNYQNDLINNDRLIWFYQPFSHRETRRDKVIYQGSSISPGSYQVSYKCIVTSKGSFTM
PPTKVYSSTQPEVFGTSNGFTYTVV*kiiiiinkh*nfin*ilqkkkk

Frame B:
qvlesvndvi*qsmlnynyrqimhh*lsnhnkylkv*mmdstftlvqtefhgthkvilny
iqhcmqwf*nl*wmq*iqqvgq*cqifqlgmislifklmln*anqlnqkhqlikn*lv*h
qlvlviighqkmkn*miyihlml*lpislitvhyfvklishwlhlskvnhhlhnslew**
it*rikfifkveqpilvmiqelvnqiqis*i*qimlpfysl*ekililnqfyrk*lislv
smanylk*ychnnvliflvylhnkkhyh*fqlhsminqikinhqilslklikiq*qnhhh
lhqsy*hiisqqilvqkmlknkshtll*laikrffsvplvmakfqlqlvliihqlifqin
qftmdfmlrkslkilvvlvlaaiii*yixiyxxiiii---

---lilqhhhyq*vevvvklimeinflqmdghlvnqlqhlklvtitma*lnlvrfsfhnl
fqlnnlhqflvqikyrqfqvqvii*iiiittiliivivvvfhqhhqyyhh**ialv*fhk
hlitlqtfsinhhyhnhrhsmilvhqplqciiclqvtlehf*iiiiiiiiiiiiiiiiii
iilvnfivvkk*w*fyqlqflil*mmfslkiqqvvv*iqliitliivvqvqtqylinvt*
nyqtikmi*limiv*fgsinhfhivkldviklftkvqvfhlvliklvinvllqvkvvslc
lqqkyilqlnlkylvlqmvsliqlfkk*****intkil*ikyykkkkk

Frame C:
kylkv*mm*fdnqc*iitigr*ctidcqittst*kck*wilrlhsfkrnfmvptr*s*ti
snivcsgskifngcnkysrlvnnvkyfnle*fh*fss*csiepin*ikntn**ridwfsi
swswlllgtkr*rik*sifi*cfncqyh**lfitlsnlfrigciypr*tiiftihwsgsk
*lke*nsysr*nsly***fkswsikfkylrfnklcfhfilfkkrs*ystnfiend*fh*c
rwptissnivtttslyfwyifttrsiiinfnyil**ik*ksitks*v*slsksnnkiitt
stnlisi*fhnky*crkc*ktnpilffn*q*ngffqfhw*wpsfscswy*lyts*ysk*t
nlqwilc*enh*ry*wcwc*qr**ynixxyixk***---

---syynititnrwrw*ss**wk*ifyrwmatw*tnfntsn**q*qwhssiw*gflftic
fssttfinfwfk*ntvsfkyk**fk****qqy****l**ffiniinittink*lwydsts
ilslfklfrsitiitiigiq*fwstnpfnvsyvfk*pwnifk******************
*ss*ilswsrsngnfisyss*fye*cfh*rsskwwyrsn***h***wfrfkpntlstslk
iiklsk*sn***sfnlvlstifts*n*t**sylprfkyftwflss*l*mycyk*r*fhya
snksiffnst*siwyfkwfhlysclknnnnnk*tlkfyklnttkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12128-1 (Contig-U12128-1Q)
/CSM_Contig/Contig-U12128-1Q.Seq.d
         (2238 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Conti...  2232  0.0
Contig-U02899-1 (Contig-U02899-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11781-1 (Contig-U11781-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U10415-1 (Contig-U10415-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U03714-1 (Contig-U03714-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U05332-1 (Contig-U05332-1Q) /CSM_Contig/Conti...    38  0.040
Contig-U04374-1 (Contig-U04374-1Q) /CSM_Contig/Conti...    38  0.040

>Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Contig-U12128-1Q.Seq.d
          Length = 2238

 Score = 2232 bits (1126), Expect = 0.0
 Identities = 1140/1147 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    acaagtacttgaaagtgtaaatgatgtgatttgacaatcaatgttgaattataactatag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    acaagtacttgaaagtgtaaatgatgtgatttgacaatcaatgttgaattataactatag 60

                                                                        
Query: 61   gcagataatgcaccattgattgtcaaatcacaacaagtacttgaaagtgtaaatgatgga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gcagataatgcaccattgattgtcaaatcacaacaagtacttgaaagtgtaaatgatgga 120

                                                                        
Query: 121  ttctacgtttacactcgttcaaacggaatttcatggtacccacaaggtaatcctgaacta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ttctacgtttacactcgttcaaacggaatttcatggtacccacaaggtaatcctgaacta 180

                                                                        
Query: 181  tatccaacattgtatgcagtggttctaaaatctttaatggatgcaataaatacagcaggt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  tatccaacattgtatgcagtggttctaaaatctttaatggatgcaataaatacagcaggt 240

                                                                        
Query: 241  tggtcaataatgtcaaatatttcaacttggaatgatttcattgattttcaagttaatgct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tggtcaataatgtcaaatatttcaacttggaatgatttcattgattttcaagttaatgct 300

                                                                        
Query: 301  caattgagccaatcaattaaatcaaaaacaccaattaataaagaattgattggtttagca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  caattgagccaatcaattaaatcaaaaacaccaattaataaagaattgattggtttagca 360

                                                                        
Query: 361  tcagttggtcttggttattattgggcaccaaaagatgaagaattaaatgatctatattca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tcagttggtcttggttattattgggcaccaaaagatgaagaattaaatgatctatattca 420

                                                                        
Query: 421  tttaatgctttaactgccaatatcactgataactgttcattactttgtcaaacttatttc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tttaatgctttaactgccaatatcactgataactgttcattactttgtcaaacttatttc 480

                                                                        
Query: 481  gcattggctgcatttatccaaggtgaaccatcatcttcacaattcattggagtggtagta 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gcattggctgcatttatccaaggtgaaccatcatcttcacaattcattggagtggtagta 540

                                                                        
Query: 541  aataacttaaagaataaaattcatattcaaggtagaacagcctatattagtgatgattca 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aataacttaaagaataaaattcatattcaaggtagaacagcctatattagtgatgattca 600

                                                                        
Query: 601  agagttggtcaatcaaattcaaatatcttagatttaacaaattatgcttccattttattc 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  agagttggtcaatcaaattcaaatatcttagatttaacaaattatgcttccattttattc 660

                                                                        
Query: 661  tctttaagaaaagatcctgatactcaaccaattttatcgaaaatgattaatttcattagt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tctttaagaaaagatcctgatactcaaccaattttatcgaaaatgattaatttcattagt 720

                                                                        
Query: 721  gtcgatggccaactatctcaagtaatattgtcacaacaacgtccttatatttttggtata 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  gtcgatggccaactatctcaagtaatattgtcacaacaacgtccttatatttttggtata 780

                                                                        
Query: 781  tcttcacaacaagaagcattatcattaatttcaattacattctatgataaatcaaataaa 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tcttcacaacaagaagcattatcattaatttcaattacattctatgataaatcaaataaa 840

                                                                        
Query: 841  aatcaatcaccaaatcttaagtttaaagcttatcaaaatccaataacaaaatcatcacca 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  aatcaatcaccaaatcttaagtttaaagcttatcaaaatccaataacaaaatcatcacca 900

                                                                        
Query: 901  cctccaccaatcttattagcatataatttcacaacaaatactagtgcagaaaatgttgaa 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cctccaccaatcttattagcatataatttcacaacaaatactagtgcagaaaatgttgaa 960

                                                                        
Query: 961  aaacaaatcccatactcttctttaattagcaataaaacggnnnnnnncagttccattggt 1020
            ||||||||||||||||||||||||||||||||||||||||       |||||||||||||
Sbjct: 961  aaacaaatcccatactcttctttaattagcaataaaacggtttttttcagttccattggt 1020

                                                                        
Query: 1021 aatggccaagtttcagttgcagttggtattgattatacaccagttaatattccaaataaa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aatggccaagtttcagttgcagttggtattgattatacaccagttaatattccaaataaa 1080

                                                                        
Query: 1081 ccaatttacaatggattttatgttgagaaaatcattaaagatattagtggtgttggtgtt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ccaatttacaatggattttatgttgagaaaatcattaaagatattagtggtgttggtgtt 1140

                   
Query: 1141 agcagcg 1147
            |||||||
Sbjct: 1141 agcagcg 1147


 Score =  846 bits (427), Expect = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1740 cctcgtgaattttatcgtggtcaagaagtaatggtaattttatcagttacagttcctgat 1799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 cctcgtgaattttatcgtggtcaagaagtaatggtaattttatcagttacagttcctgat 1799

                                                                        
Query: 1800 tttatgaatgatgttttcattgaagatccagcaagtggtggtatagatccaattgataat 1859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 tttatgaatgatgttttcattgaagatccagcaagtggtggtatagatccaattgataat 1859

                                                                        
Query: 1860 aacattgataatagtggttcaggttcaaacccaataccttatcaacgtcacttaaaatta 1919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 aacattgataatagtggttcaggttcaaacccaataccttatcaacgtcacttaaaatta 1919

                                                                        
Query: 1920 tcaaactatcaaaatgatctaattaataatgatcgtttaatttggttctatcaaccattt 1979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 tcaaactatcaaaatgatctaattaataatgatcgtttaatttggttctatcaaccattt 1979

                                                                        
Query: 1980 tcacatcgtgaaactagacgtgataaagttatttaccaaggttcaagtatttcacctggt 2039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 tcacatcgtgaaactagacgtgataaagttatttaccaaggttcaagtatttcacctggt 2039

                                                                        
Query: 2040 tcttatcaagttagttataaatgtattgttacaagtaaaggtagtttcactatgcctcca 2099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 tcttatcaagttagttataaatgtattgttacaagtaaaggtagtttcactatgcctcca 2099

                                                                        
Query: 2100 acaaaagtatattcttcaactcaacctgaagtatttggtacttcaaatggtttcacttat 2159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 acaaaagtatattcttcaactcaacctgaagtatttggtacttcaaatggtttcacttat 2159

                   
Query: 2160 acagttg 2166
            |||||||
Sbjct: 2160 acagttg 2166


 Score =  468 bits (236), Expect = e-131
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1203 actcatattacaacatcaccattaccaataggtggaggtggtagtcaagttgataatgga 1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 actcatattacaacatcaccattaccaataggtggaggtggtagtcaagttgataatgga 1262

                                                                        
Query: 1263 aataaattttttacagatggatggccacttggtgaaccaacttcaacacctcaaattagt 1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 aataaattttttacagatggatggccacttggtgaaccaacttcaacacctcaaattagt 1322

                                                                        
Query: 1323 aacaataacaatggcatagctcaatctggtgaggttttcttttcacaatttgtttcagct 1382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 aacaataacaatggcatagctcaatctggtgaggttttcttttcacaatttgtttcagct 1382

                                                                    
Query: 1383 caacaaccttcatcaatttctggttcaaataaaataccgtcagtttcaagtacaag 1438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 caacaaccttcatcaatttctggttcaaataaaataccgtcagtttcaagtacaag 1438


 Score =  393 bits (198), Expect = e-109
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1480 gtaattgtagtagtttttcatcaacatcatcaatattaccaccattaataaatagctctg 1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 gtaattgtagtagtttttcatcaacatcatcaatattaccaccattaataaatagctctg 1539

                                                                        
Query: 1540 gtatgattccacaagcatcttatcactcttcaaactttttcgatcaatcaccattatcac 1599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 gtatgattccacaagcatcttatcactcttcaaactttttcgatcaatcaccattatcac 1599

                                                                        
Query: 1600 aatcatcggcattcaatgattttggtccaccaaccccttcaatgtatcatatgtcttcaa 1659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 aatcatcggcattcaatgattttggtccaccaaccccttcaatgtatcatatgtcttcaa 1659

                              
Query: 1660 gtaaccctggaacatttt 1677
            ||||||||||||||||||
Sbjct: 1660 gtaaccctggaacatttt 1677


 Score = 40.1 bits (20), Expect = 0.010
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 65 ataatgcaccattgattgtcaaatcaca 92
          ||||| || |||||||||||||||||||
Sbjct: 52 ataattcaacattgattgtcaaatcaca 25


 Score = 40.1 bits (20), Expect = 0.010
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 25 tgtgatttgacaatcaatgttgaattat 52
          ||||||||||||||||||| || |||||
Sbjct: 92 tgtgatttgacaatcaatggtgcattat 65


>Contig-U02899-1 (Contig-U02899-1Q) /CSM_Contig/Contig-U02899-1Q.Seq.d
          Length = 751

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1496 ttcatcaacatcatcaatatta 1517
            ||||||||||||||||||||||
Sbjct: 447  ttcatcaacatcatcaatatta 426


>Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Contig-U11893-1Q.Seq.d
          Length = 1661

 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 633  tttaacaaattatgcttccat 653
            |||||||||||||||||||||
Sbjct: 1025 tttaacaaattatgcttccat 1045


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,152
Number of Sequences: 6905
Number of extensions: 30152
Number of successful extensions: 3800
Number of sequences better than 10.0: 437
length of query: 2238
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2222
effective length of database: 5,564,391
effective search space: 12364076802
effective search space used: 12364076802
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Contig-U12128-1Q.Seq.d
         (2238 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060718) Dictyostelium discoideum slug cDNA, clone SLB220.     1148   0.0    1
(BJ398058) Dictyostelium discoideum cDNA clone:dds10e20, 3' ...   841   0.0    4
(BJ354094) Dictyostelium discoideum cDNA clone:dda52b17, 3' ...   747   0.0    4
(BJ355038) Dictyostelium discoideum cDNA clone:dda55f13, 3' ...   626   0.0    5
(AU033603) Dictyostelium discoideum slug cDNA, clone SLB220.      850   0.0    1
(BJ409008) Dictyostelium discoideum cDNA clone:dds47p14, 3' ...   850   0.0    1
(BJ407591) Dictyostelium discoideum cDNA clone:dds43e05, 3' ...   850   0.0    1
(BJ406991) Dictyostelium discoideum cDNA clone:dds37i03, 3' ...   850   0.0    1
(AU034429) Dictyostelium discoideum slug cDNA, clone SLC863.      848   0.0    1
(C93316) Dictyostelium discoideum slug cDNA, clone SSM617.        468   0.0    2
(BJ384430) Dictyostelium discoideum cDNA clone:ddc49n08, 3' ...   394   0.0    4
(BJ353369) Dictyostelium discoideum cDNA clone:dda49n19, 3' ...   111   1e-19  1
(EK400816) 1095469540222 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.073  2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    32   0.32   20
(AL713865) Mouse DNA sequence from clone RP23-451D4 on chrom...    50   0.37   1
(AC127330) Mus musculus BAC clone RP23-126N22 from 6, comple...    50   0.37   1
(AC122042) Mus musculus BAC clone RP24-446B12 from chromosom...    50   0.37   1
(CU861914) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.37   1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.56   14
(AF465305) Dictyostelium discoideum ABC transporter ABCA.3 (...    30   1.4    7
(CU179637) M.truncatula DNA sequence from clone MTH2-5M18 on...    48   1.5    1
(AL391475) Human DNA sequence from clone RP11-33G16 on chrom...    48   1.5    1
(AL391381) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   1.5    1
(AC023574) Homo sapiens chromosome 9 clone RP11-486D12 map 9...    48   1.5    1
(AF474377) Dictyostelium discoideum Ras GTP exchange factor ...    34   2.2    4
(BV070505) S212P6100FE7.T0 CZECHII/Ei Mus musculus STS genom...    42   2.3    2
(CD475123) nad03-11ms2-c06 Nad03 Nuphar advena cDNA clone na...    32   3.6    3
(CR932108) Paramecium tetraurelia centrin-related protein gene.    34   4.1    5
(AY342160) Canine coronavirus strain BGF10 spike (S), non-st...    46   4.6    3
(AY160100) Dictyostelium discoideum nucleotide exchange fact...    34   5.2    4
(BV664681) S215P60315RG5.T0 Clara Pan troglodytes troglodyte...    46   5.8    1
(AL845517) Mouse DNA sequence from clone RP23-461M2 on chrom...    46   5.8    1
(AC098878) Mus musculus BAC clone RP23-2G23 from 4, complete...    46   5.8    1
(AC147975) Pan troglodytes BAC clone CH251-510J15 from chrom...    46   5.8    1
(AC146058) Pan troglodytes BAC clone RP43-92A10 from chromos...    46   5.8    1
(AJ864618) Orpinomyces sp. OUS1 partial ORF for hypothetical...    46   5.8    1
(I62854) Sequence 5 from patent US 5661006.                        46   5.8    1
(CS192906) Sequence 1150 from Patent WO2005103073.                 46   5.8    1
(A22886) CCV-C54 spike gene.                                       46   5.8    1
(AC011197) Homo sapiens chromosome 10 clone RP11-322C8, comp...    46   5.8    1
(CU468024) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.8    1
(CU467971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.8    1
(AC181368) Strongylocentrotus purpuratus clone R3-49D19, WOR...    46   5.8    1
(AC181356) Strongylocentrotus purpuratus clone R3-45M18, WOR...    46   5.8    1
(AC180801) Strongylocentrotus purpuratus clone R3-3071G15, W...    46   5.8    1
(AC180251) Strongylocentrotus purpuratus clone R3-3008H17, W...    46   5.8    1
(AC011770) Homo sapiens chromosome 8 clone RP11-147P10 map 8...    46   5.8    1
(EY790392) CR05-C3-700-119-F11-CT.F Mandarin fruit, developm...    46   5.8    1
(EY378052) CAXA17057.rev CAXA Helobdella robusta Subtracted ...    46   5.8    1
(AM285316) Spiroplasma citri GII3-3X chromosome, contig Cont...    46   5.8    1
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    46   5.8    1
(BJ381647) Dictyostelium discoideum cDNA clone:ddc42p01, 3' ...    38   8.8    2
(AY737555) Clostridium perfringens strain F5603 plasmid cpe ...    34   8.9    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   9.4    21
(ED549975) WCBE352TF WCBAC Trifolium repens genomic clone 27...    40   9.8    2
(ED367310) AUAC-aag13h10.b1 Ascaris suum whole genome shotgu...    34   9.9    3

>(AU060718) Dictyostelium discoideum slug cDNA, clone SLB220.
          Length = 579

 Score = 1148 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Plus


Query: 1   acaagtacttgaaagtgtaaatgatgtgatttgacaatcaatgttgaattataactatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaagtacttgaaagtgtaaatgatgtgatttgacaatcaatgttgaattataactatag 60


Query: 61  gcagataatgcaccattgattgtcaaatcacaacaagtacttgaaagtgtaaatgatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcagataatgcaccattgattgtcaaatcacaacaagtacttgaaagtgtaaatgatgga 120


Query: 121 ttctacgtttacactcgttcaaacggaatttcatggtacccacaaggtaatcctgaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctacgtttacactcgttcaaacggaatttcatggtacccacaaggtaatcctgaacta 180


Query: 181 tatccaacattgtatgcagtggttctaaaatctttaatggatgcaataaatacagcaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatccaacattgtatgcagtggttctaaaatctttaatggatgcaataaatacagcaggt 240


Query: 241 tggtcaataatgtcaaatatttcaacttggaatgatttcattgattttcaagttaatgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtcaataatgtcaaatatttcaacttggaatgatttcattgattttcaagttaatgct 300


Query: 301 caattgagccaatcaattaaatcaaaaacaccaattaataaagaattgattggtttagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caattgagccaatcaattaaatcaaaaacaccaattaataaagaattgattggtttagca 360


Query: 361 tcagttggtcttggttattattgggcaccaaaagatgaagaattaaatgatctatattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcagttggtcttggttattattgggcaccaaaagatgaagaattaaatgatctatattca 420


Query: 421 tttaatgctttaactgccaatatcactgataactgttcattactttgtcaaacttatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttaatgctttaactgccaatatcactgataactgttcattactttgtcaaacttatttc 480


Query: 481 gcattggctgcatttatccaaggtgaaccatcatcttcacaattcattggagtggtagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcattggctgcatttatccaaggtgaaccatcatcttcacaattcattggagtggtagta 540


Query: 541 aataacttaaagaataaaattcatattcaaggtagaaca 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aataacttaaagaataaaattcatattcaaggtagaaca 579

 Score = 40.1 bits (20), Expect(2) = 1e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus


Query: 65 ataatgcaccattgattgtcaaatcaca 92
          ||||| || |||||||||||||||||||
Sbjct: 52 ataattcaacattgattgtcaaatcaca 25

 Score = 40.1 bits (20), Expect(2) = 1e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus


Query: 25 tgtgatttgacaatcaatgttgaattat 52
          ||||||||||||||||||| || |||||
Sbjct: 92 tgtgatttgacaatcaatggtgcattat 65

 Score = 52.0 bits (26), Expect = 0.093
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 93  acaagtacttgaaagtgtaaatgatg 118
           ||||||||||||||||||||||||||
Sbjct: 1   acaagtacttgaaagtgtaaatgatg 26

 Score = 52.0 bits (26), Expect = 0.093
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 1   acaagtacttgaaagtgtaaatgatg 26
           ||||||||||||||||||||||||||
Sbjct: 93  acaagtacttgaaagtgtaaatgatg 118

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,282,044,322
Number of extensions: 131544694
Number of successful extensions: 10564093
Number of sequences better than 10.0: 57
Length of query: 2238
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2214
Effective length of database: 97,308,875,965
Effective search space: 215441851386510
Effective search space used: 215441851386510
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12128-1 (Contig-U12128-1Q) /CSM_Contig/Contig-U12128-1Q.Seq.d
         (2238 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000251_2029(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    52   1e-04
CP001357_909(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    51   2e-04
CP001131_1827(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    50   3e-04
CP000155_6724(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    47   0.004
CP000804_2538(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    46   0.005
CP000686_2795(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    46   0.007
AM746676_4416(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    45   0.009
CP000478_2205(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    45   0.015
CP000686_2127(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    41   0.21
CP000951_2530(CP000951|pid:none) Synechococcus sp. PCC 7002, com...    39   1.1
CP000777_2829(CP000777|pid:none) Leptospira biflexa serovar Pato...    37   2.4
AE016825_2560(AE016825|pid:none) Chromobacterium violaceum ATCC ...    37   2.4
AM746676_8035(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    37   4.0
CP001185_613(CP001185|pid:none) Thermosipho africanus TCF52B, co...    36   5.3
AE014187_589(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   6.9
AL844505_236(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    36   6.9
AM475602_1(AM475602|pid:none) Vitis vinifera contig VV78X103370....    36   6.9
AC105743_23(AC105743|pid:none) Oryza sativa chromosome 3 BAC OSJ...    36   6.9
AP008984_107(AP008984|pid:none) Cyprinid herpesvirus 3 DNA, comp...    35   9.0
AF334801_1(AF334801|pid:none) Mus musculus OL-protocadherin isof...    35   9.0
AB037821_1(AB037821|pid:none) Homo sapiens mRNA for KIAA1400 pro...    35   9.0
BC111560_1(BC111560|pid:none) Homo sapiens protocadherin 10, mRN...    35   9.0
BC065695_1(BC065695|pid:none) Mus musculus protocadherin 10, mRN...    35   9.0
AK314377_1(AK314377|pid:none) Homo sapiens cDNA, FLJ95150, Homo ...    35   9.0
AK158144_1(AK158144|pid:none) Mus musculus adult inner ear cDNA,...    35   9.0
DQ657948_93(DQ657948|pid:none) Koi herpesvirus strain KHV-U, com...    35   9.0

>CP000251_2029(CP000251|pid:none) Anaeromyxobacter dehalogenans 2CP-C,
            complete genome.
          Length = 1974

 Score = 51.6 bits (122), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 38/67 (56%)
 Frame = +3

Query: 1965 FYQPFSHRETRRDKVIYQGSSISPGSYQVSYKCIVTSKGSFTMPPTKVYSSTQPEVFGTS 2144
            F+ PF+H+E R D+++    S+ PG +  ++    T+ G+F + P +      PEVFG S
Sbjct: 1903 FWSPFNHQERRDDRLVLFADSLPPGLHVATFVARATTPGTFLLAPARAEEMYAPEVFGRS 1962

Query: 2145 NGFTYTV 2165
            +  T+ V
Sbjct: 1963 DAGTFEV 1969

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,986,781,193
Number of extensions: 53328640
Number of successful extensions: 143202
Number of sequences better than 10.0: 26
Number of HSP's gapped: 142040
Number of HSP's successfully gapped: 29
Length of query: 746
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 610
Effective length of database: 611,008,840
Effective search space: 372715392400
Effective search space used: 372715392400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.68  gvh: 0.49  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for Contig-U12128-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 3
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0