Contig-U12125-1
Contig ID Contig-U12125-1
Contig update 2002.12.18
Contig sequence
>Contig-U12125-1 (Contig-U12125-1Q) /CSM_Contig/Contig-U12125-1Q.Seq.d
ATATTTTTAATTAAACAAAAATTAAATAAATATATATAAATACTATTTTT
TAAAATATAATCAAAATATTTTGATTATTTCTATGAATGAAAAATAGAGA
AGAAAAACAACAACAACAAATGTCTTTAATGAAAGAATGGGATGAACCAT
CGACAACAACAACAACAACAACAACAGATCAATCAAATCAACCATATAAA
TATATTGAAGCAAAATGTAATTTAAATAAAGAAACAGAGAAATCAATTGG
ACATCCAGTTAGTAAATTTGCAAAGATAGTAATTGTTTTATTGGCAATAT
CATTACCAACGATTTCATTTGTATTGGCAGCAAGAGTTAAAGGAAGATTA
ACATTACCATTTTATATATTTGGATTACCATCATGGTTGATATTGGTACC
AATTTTAATATATTTCTATAGGAAGAAGGGATTCTCCCCATTTATAAGAT
CAAAAGGTATCACTGCATTAATGGCAGTATCATTTTCATTCTATTCACTT
TACAACATACTTTTTTCAATGTACATTTTAAGACCATTCTTTGTGGTGGA
TCAAGAGAACAATGCTGTCAGTGGGTATAGATACCGAGGCATTATGTGGC
TACCATTGCTCATATTGATTTATTTACACTCAACTGTTTACATTCAACAT
TTAGTATTATCAAAATGTAAAATGCGTCCAAAACTTTATTTATATTTAGT
GTCGTATCCATCATCGGTATTCTTCACAACAATGATACTATCGATACCAT
TCTATTTG----------TGTGAGAGTACCGTTAAATTAAATCCAGATTT
AGTACTATTAACTGGTGATTTCTTTACATCCGAATCATTCAATCCAGAGA
ATACCTTGGAGATAGCATTGGCACCATTAAAGAAACTACCACATGNAAAG
GTTTTCGCTTGTGTTGGAAATCATGATTTAAAGGAAGGTTGTATGGAAAT
TNTAGAGANAGCTTTAAANNCGATTCAATGTCCACTTTTAATTGATCAAA
GTGTTTTGGTTGAAACTCGTATTGGCAAAATTCAAATCACTGGTTTTGAC
TATAGAAATAAAGCAAGACAACAACATATCCATGAGGTTTGTTCTGCTTA
TCCACCCATCCAAGGTATACCAAGAATTGCATTACTTCATGATCCTGGTT
CTTTTAAATTCATTCCAACCGATTATGGTTGTATCACTTTCTCTGGTCAT
ACTCATGGTGGTCAAATTGGTATTCGTTCAGATTTACTCTCATTAACAAT
GGTTGGTATCACTGGTATTCCAGATTATTCACTTTGGAGAAATGGTAATA
ATTATCTTTATGTTCATACTGGTCAAGGTTGTAGAAGTATGTTAGGTACT
ATGGTATTAAGAGTTGGTGTACCTGCTGAAGATAGTTTACTTCAAGTTTA
TTTTGAAAGTTAATTAAAAAAAAATAATAATAATAATAAATTAATCGATA
TTTTTTATATGGGTGACATATAAATTAAAAATTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 1519
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1717761
End point 1716282
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 5
Link to clone list U12125
List of clone(s)

est1=VFH329F,1,446
est2=SLA658F,63,759
est3=VHD312Z,760,1446
est4=SLA658Z,985,1521
est5=VFH329Z,1004,1366
Translated Amino Acid sequence
ifn*tkik*iyintif*niikif*lfl*MKNREEKQQQQMSLMKEWDEPSTTTTTTTTDQ
SNQPYKYIEAKCNLNKETEKSIGHPVSKFAKIVIVLLAISLPTISFVLAARVKGRLTLPF
YIFGLPSWLILVPILIYFYRKKGFSPFIRSKGITALMAVSFSFYSLYNILFSMYILRPFF
VVDQENNAVSGYRYRGIMWLPLLILIYLHSTVYIQHLVLSKCKMRPKLYLYLVSYPSSVF
FTTMILSIPFYL---

---CESTVKLNPDLVLLTGDFFTSESFNPENTLEIALAPLKKLPHXKVFACVGNHDLKEG
CMEIXEXALXXIQCPLLIDQSVLVETRIGKIQITGFDYRNKARQQHIHEVCSAYPPIQGI
PRIALLHDPGSFKFIPTDYGCITFSGHTHGGQIGIRSDLLSLTMVGITGIPDYSLWRNGN
NYLYVHTGQGCRSMLGTMVLRVGVPAEDSLLQVYFES*lkknnnnnklidifymgdi*ik
n*kkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iflikqklnkyi*ilffki*skyfdyfye*kiekknnnnkcl**kngmnhrqqqqqqqqi
nqinhinilkqnvi*ikkqrnqldiqlvnlqr**lfywqyhyqrfhlywqqelked*hyh
fiyldyhhg*ywyqf*yisigrrdsphl*dqkvslh*wqyhfhsihfttyffqctf*dhs
lwwikrtmlsvgidtealcgyhcsy*fiytqlftfni*yyqnvkcvqnfiyi*crihhry
ssqq*yyryhsi---

---CESTVKLNPDLVLLTGDFFTSESFNPENTLEIALAPLKKLPHXKVFACVGNHDLKEG
CMEIXEXALXXIQCPLLIDQSVLVETRIGKIQITGFDYRNKARQQHIHEVCSAYPPIQGI
PRIALLHDPGSFKFIPTDYGCITFSGHTHGGQIGIRSDLLSLTMVGITGIPDYSLWRNGN
NYLYVHTGQGCRSMLGTMVLRVGVPAEDSLLQVYFES*lkknnnnnklidifymgdi*ik
n*kkkkkkkkkkkkkk

Frame B:
yf*lnkn*iniykyyflkynqniliismnek*rrkttttnvfnermg*tidnnnnnnnrs
iksti*iy*skm*fk*rnreinwtss**ickdsncfigniitndficigsks*rkiniti
lyiwitimvdigtnfnifl*eegilpiykikryhcingsiifilftlqhtffnvhfktil
cggsreqccqwv*iprhyvatiahidlftlnclhstfsiikm*nasktlfifsvvsiigi
lhnndtidtilf---

---vrvpln*iqi*yy*lvislhpnhsiqripwr*hwhh*rnyhmxrfslvleimi*rkv
vwkx*rxl*xrfnvhf*likvfwlklvlakfkslvltieikqdnnismrfvllihpskvy
qelhyfmilvllnsfqpimvvslslvilmvvklvfvqiysh*qwlvslvfqiihfgemvi
iifmfilvkvvevc*vlwy*elvyllkivyfkfilkvn*kkiiiiin*siffiwvtyklk
ikkkkkkkkkkkkkkk

Frame C:
ifn*tkik*iyintif*niikif*lfl*MKNREEKQQQQMSLMKEWDEPSTTTTTTTTDQ
SNQPYKYIEAKCNLNKETEKSIGHPVSKFAKIVIVLLAISLPTISFVLAARVKGRLTLPF
YIFGLPSWLILVPILIYFYRKKGFSPFIRSKGITALMAVSFSFYSLYNILFSMYILRPFF
VVDQENNAVSGYRYRGIMWLPLLILIYLHSTVYIQHLVLSKCKMRPKLYLYLVSYPSSVF
FTTMILSIPFYL---

---*eyr*iksrfstinw*flyiriiqsreylgdsigtiketttxkgfrlcwks*fkgrl
ygnxrxsfkxdsmstfn*skcfg*nsywqnsnhwf*l*k*sktttyp*glfclsthpryt
kncits*swff*ihsnrlwlyhflwsyswwsnwysfrftlinngwyhwysrlftlekw**
lslcsywsrl*kyvryygikswctc*r*ftsslf*klikkk*****inryflyg*hin*k
lkkkkkkkkkkkkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12125-1 (Contig-U12125-1Q)
/CSM_Contig/Contig-U12125-1Q.Seq.d
(1529 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12125-1 (Contig-U12125-1Q) /CSM_Contig/Conti... 2367 0.0
Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13858-1 (Contig-U13858-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U12684-1 (Contig-U12684-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U10762-1 (Contig-U10762-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U13855-1 (Contig-U13855-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U12392-1 (Contig-U12392-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti... 38 0.027

>Contig-U12125-1 (Contig-U12125-1Q) /CSM_Contig/Contig-U12125-1Q.Seq.d
Length = 1529

Score = 2367 bits (1194), Expect = 0.0
Identities = 1239/1239 (100%)
Strand = Plus / Plus


Query: 177 gatcaatcaaatcaaccatataaatatattgaagcaaaatgtaatttaaataaagaaaca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gatcaatcaaatcaaccatataaatatattgaagcaaaatgtaatttaaataaagaaaca 236


Query: 237 gagaaatcaattggacatccagttagtaaatttgcaaagatagtaattgttttattggca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gagaaatcaattggacatccagttagtaaatttgcaaagatagtaattgttttattggca 296


Query: 297 atatcattaccaacgatttcatttgtattggcagcaagagttaaaggaagattaacatta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atatcattaccaacgatttcatttgtattggcagcaagagttaaaggaagattaacatta 356


Query: 357 ccattttatatatttggattaccatcatggttgatattggtaccaattttaatatatttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccattttatatatttggattaccatcatggttgatattggtaccaattttaatatatttc 416


Query: 417 tataggaagaagggattctccccatttataagatcaaaaggtatcactgcattaatggca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tataggaagaagggattctccccatttataagatcaaaaggtatcactgcattaatggca 476


Query: 477 gtatcattttcattctattcactttacaacatacttttttcaatgtacattttaagacca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtatcattttcattctattcactttacaacatacttttttcaatgtacattttaagacca 536


Query: 537 ttctttgtggtggatcaagagaacaatgctgtcagtgggtatagataccgaggcattatg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttctttgtggtggatcaagagaacaatgctgtcagtgggtatagataccgaggcattatg 596


Query: 597 tggctaccattgctcatattgatttatttacactcaactgtttacattcaacatttagta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tggctaccattgctcatattgatttatttacactcaactgtttacattcaacatttagta 656


Query: 657 ttatcaaaatgtaaaatgcgtccaaaactttatttatatttagtgtcgtatccatcatcg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttatcaaaatgtaaaatgcgtccaaaactttatttatatttagtgtcgtatccatcatcg 716


Query: 717 gtattcttcacaacaatgatactatcgataccattctatttgnnnnnnnnnntgtgagag 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gtattcttcacaacaatgatactatcgataccattctatttgnnnnnnnnnntgtgagag 776


Query: 777 taccgttaaattaaatccagatttagtactattaactggtgatttctttacatccgaatc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 taccgttaaattaaatccagatttagtactattaactggtgatttctttacatccgaatc 836


Query: 837 attcaatccagagaataccttggagatagcattggcaccattaaagaaactaccacatgn 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 attcaatccagagaataccttggagatagcattggcaccattaaagaaactaccacatgn 896


Query: 897 aaaggttttcgcttgtgttggaaatcatgatttaaaggaaggttgtatggaaattntaga 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aaaggttttcgcttgtgttggaaatcatgatttaaaggaaggttgtatggaaattntaga 956


Query: 957 ganagctttaaanncgattcaatgtccacttttaattgatcaaagtgttttggttgaaac 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ganagctttaaanncgattcaatgtccacttttaattgatcaaagtgttttggttgaaac 1016


Query: 1017 tcgtattggcaaaattcaaatcactggttttgactatagaaataaagcaagacaacaaca 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tcgtattggcaaaattcaaatcactggttttgactatagaaataaagcaagacaacaaca 1076


Query: 1077 tatccatgaggtttgttctgcttatccacccatccaaggtataccaagaattgcattact 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 tatccatgaggtttgttctgcttatccacccatccaaggtataccaagaattgcattact 1136


Query: 1137 tcatgatcctggttcttttaaattcattccaaccgattatggttgtatcactttctctgg 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 tcatgatcctggttcttttaaattcattccaaccgattatggttgtatcactttctctgg 1196


Query: 1197 tcatactcatggtggtcaaattggtattcgttcagatttactctcattaacaatggttgg 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 tcatactcatggtggtcaaattggtattcgttcagatttactctcattaacaatggttgg 1256


Query: 1257 tatcactggtattccagattattcactttggagaaatggtaataattatctttatgttca 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 tatcactggtattccagattattcactttggagaaatggtaataattatctttatgttca 1316


Query: 1317 tactggtcaaggttgtagaagtatgttaggtactatggtattaagagttggtgtacctgc 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 tactggtcaaggttgtagaagtatgttaggtactatggtattaagagttggtgtacctgc 1376


Query: 1377 tgaagatagtttacttcaagtttattttgaaagttaatt 1415
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 tgaagatagtttacttcaagtttattttgaaagttaatt 1415


Score = 182 bits (92), Expect = 8e-46
Identities = 92/92 (100%)
Strand = Plus / Plus


Query: 61 tcaaaatattttgattatttctatgaatgaaaaatagagaagaaaaacaacaacaacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaaaatattttgattatttctatgaatgaaaaatagagaagaaaaacaacaacaacaaa 120


Query: 121 tgtctttaatgaaagaatgggatgaaccatcg 152
||||||||||||||||||||||||||||||||
Sbjct: 121 tgtctttaatgaaagaatgggatgaaccatcg 152


Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 61 tcaaaatattttgattat 78
||||||||||||||||||
Sbjct: 74 tcaaaatattttgattat 57


>Contig-U02486-1 (Contig-U02486-1Q) /CSM_Contig/Contig-U02486-1Q.Seq.d
Length = 609

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 100 aagaaaaacaacaacaacaaa 120
|||||||||||||||||||||
Sbjct: 578 aagaaaaacaacaacaacaaa 598


>Contig-U13858-1 (Contig-U13858-1Q) /CSM_Contig/Contig-U13858-1Q.Seq.d
Length = 650

Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 100 aagaaaaacaacaacaacaa 119
||||||||||||||||||||
Sbjct: 581 aagaaaaacaacaacaacaa 600


Score = 30.2 bits (15), Expect = 6.7
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 98 agaagaaaaacaacaacaa 116
||||||||||||| |||||
Sbjct: 549 agaagaaaaacaaaaacaa 567


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,386
Number of Sequences: 6905
Number of extensions: 26386
Number of successful extensions: 6738
Number of sequences better than 10.0: 584
length of query: 1529
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1513
effective length of database: 5,564,391
effective search space: 8418923583
effective search space used: 8418923583
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12125-1 (Contig-U12125-1Q) /CSM_Contig/Contig-U12125-1Q.Seq.d
(1529 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060237) Dictyostelium discoideum slug cDNA, clone SLA658. 1152 0.0 1
(BJ438491) Dictyostelium discoideum cDNA clone:ddv37h03, 3' ... 634 0.0 3
(AU033355) Dictyostelium discoideum slug cDNA, clone SLA658. 837 0.0 1
(BJ431742) Dictyostelium discoideum cDNA clone:ddv15j07, 3' ... 581 0.0 3
(BJ413391) Dictyostelium discoideum cDNA clone:ddv15j07, 5' ... 535 e-147 1
(AC211259) Zea mays chromosome 4 clone CH201-371C2; ZMMBBc03... 50 0.25 1
(AC205712) Zea mays chromosome 9 clone CH201-99P1; ZMMBBc009... 50 0.25 1
(AC199579) Zea mays chromosome unknown clone CH201-462G9; ZM... 50 0.25 1
(AC197721) Zea mays chromosome 9 clone CH201-26M4; ZMMBBc002... 50 0.25 1
(AC185644) Zea mays chromosome 4 clone CH201-407N6; ZMMBBc04... 50 0.25 1
(CL239251) ZMMBBb0586K17f ZMMBBb (HindIII) Zea mays subsp. m... 50 0.25 1
(EL497371) PFLAB1-L-P5A1_A06_02.AB1 Blood stage Plasmodium f... 32 0.29 3
(EK006453) 1092955099690 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.51 3
(AM456622) Vitis vinifera contig VV78X102910.17, whole genom... 48 0.99 1
(AM447705) Vitis vinifera contig VV78X039175.7, whole genome... 48 0.99 1
(AC230039) Zea mays chromosome 9 clone CH201-139J1; ZMMBBc01... 48 0.99 1
(AC210778) Zea mays chromosome 9 clone CH201-172E7; ZMMBBc01... 48 0.99 1
(AC210265) Zea mays chromosome 9 clone CH201-25J1; ZMMBBc002... 48 0.99 1
(AC210231) Zea mays chromosome 9 clone ZMMBBb-631H1; ZMMBBb0... 48 0.99 1
(AC206277) Zea mays chromosome 10 clone ZMMBBb-589E19; ZMMBB... 48 0.99 1
(AC199411) Zea mays chromosome 10 clone CH201-192I6; ZMMBBc0... 48 0.99 1
(BH871838) hn37a07.g1 WGS-ZmaysF (JM107 adapted methyl filte... 48 0.99 1
(AC007654) Genomic sequence for Arabidopsis thaliana BAC T19... 44 1.8 3
(AC060798) Homo sapiens chromosome 17, clone RP11-615P24, co... 34 2.0 2
(AC005969) Homo sapiens chromosome 17, clone hRPK.215_P_18, ... 34 2.0 2
(AM476303) Vitis vinifera contig VV78X227921.13, whole genom... 36 2.3 2
(AM444346) Vitis vinifera contig VV78X052782.2, whole genome... 36 2.5 2
(AC216600) Populus trichocarpa clone POP074-D07, complete se... 34 3.3 7
(EI222273) OR__Ba0014N13.r OR__Ba Oryza rufipogon genomic cl... 38 3.7 3
(AL138974) Human chromosome 14 DNA sequence BAC C-2384A14 of... 46 3.9 1
(AL135878) Human chromosome 14 DNA sequence BAC R-148E17 of ... 46 3.9 1
(AC069255) Homo sapiens 3 BAC RP11-568N1 (Roswell Park Cance... 46 3.9 1
(AC005234) Homo sapiens BAC clone RP11-436H22 from 2, comple... 46 3.9 1
(AC069515) Homo sapiens chromosome 3 clone RP11-20F9, WORKIN... 46 3.9 1
(AC216213) Zea mays chromosome 3 clone CH201-549P12; ZMMBBc0... 46 3.9 1
(AC210605) Zea mays chromosome 2 clone CH201-342M1; ZMMBBc03... 46 3.9 1
(AC209928) Zea mays chromosome 3 clone CH201-392B23; ZMMBBc0... 46 3.9 1
(EJ057038) 1095456035903 Global-Ocean-Sampling_GS-26-01-01-1... 46 3.9 1
(CC284803) CH261-160E22_Sp6.1 CH261 Gallus gallus genomic cl... 46 3.9 1
(BZ811868) PUGAS60TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 3.9 1
(EY708160) CS00-C3-701-076-G02-CT.F Sweet orange fruit, deve... 46 3.9 1
(D49702) Pichia canadensis mitochondrial genes for tRNA-Pro,... 40 4.4 3
(EG758825) EST_ssal_sjb_7348 ssalsjb mixed_tissue Salmo sala... 42 4.4 2
(AC198365) Zea mays chromosome 5 clone CH201-31G14; ZMMBBc00... 42 4.8 4
(AC138070) Homo sapiens chromosome 3 clone RP11-263E3, compl... 40 5.5 3
(BX296561) Zebrafish DNA sequence from clone CH211-145F17 in... 38 8.6 6
(EK064413) 1092960107630 Global-Ocean-Sampling_GS-31-01-01-1... 32 9.4 3

>(AU060237) Dictyostelium discoideum slug cDNA, clone SLA658.
Length = 697

Score = 1152 bits (581), Expect = 0.0
Identities = 581/581 (100%)
Strand = Plus / Plus


Query: 177 gatcaatcaaatcaaccatataaatatattgaagcaaaatgtaatttaaataaagaaaca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gatcaatcaaatcaaccatataaatatattgaagcaaaatgtaatttaaataaagaaaca 174


Query: 237 gagaaatcaattggacatccagttagtaaatttgcaaagatagtaattgttttattggca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gagaaatcaattggacatccagttagtaaatttgcaaagatagtaattgttttattggca 234


Query: 297 atatcattaccaacgatttcatttgtattggcagcaagagttaaaggaagattaacatta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atatcattaccaacgatttcatttgtattggcagcaagagttaaaggaagattaacatta 294


Query: 357 ccattttatatatttggattaccatcatggttgatattggtaccaattttaatatatttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ccattttatatatttggattaccatcatggttgatattggtaccaattttaatatatttc 354


Query: 417 tataggaagaagggattctccccatttataagatcaaaaggtatcactgcattaatggca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tataggaagaagggattctccccatttataagatcaaaaggtatcactgcattaatggca 414


Query: 477 gtatcattttcattctattcactttacaacatacttttttcaatgtacattttaagacca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtatcattttcattctattcactttacaacatacttttttcaatgtacattttaagacca 474


Query: 537 ttctttgtggtggatcaagagaacaatgctgtcagtgggtatagataccgaggcattatg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttctttgtggtggatcaagagaacaatgctgtcagtgggtatagataccgaggcattatg 534


Query: 597 tggctaccattgctcatattgatttatttacactcaactgtttacattcaacatttagta 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tggctaccattgctcatattgatttatttacactcaactgtttacattcaacatttagta 594


Query: 657 ttatcaaaatgtaaaatgcgtccaaaactttatttatatttagtgtcgtatccatcatcg 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttatcaaaatgtaaaatgcgtccaaaactttatttatatttagtgtcgtatccatcatcg 654


Query: 717 gtattcttcacaacaatgatactatcgataccattctattt 757
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtattcttcacaacaatgatactatcgataccattctattt 695

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,444,502,853
Number of extensions: 86325766
Number of successful extensions: 7004617
Number of sequences better than 10.0: 47
Length of query: 1529
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1505
Effective length of database: 97,308,875,965
Effective search space: 146449858327325
Effective search space used: 146449858327325
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12125-1 (Contig-U12125-1Q) /CSM_Contig/Contig-U12125-1Q.Seq.d
(1529 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BX842655_273(BX842655|pid:none) Bdellovibrio bacteriovorus compl... 60 2e-07
(O35040) RecName: Full=Uncharacterized metallophosphoesterase yk... 57 1e-06
AE017125_446(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 54 1e-05
CP000117_2725(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 54 1e-05
CP000113_6801(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 54 1e-05
CP001351_259(CP001351|pid:none) Methylobacterium nodulans ORS 20... 54 2e-05
CP000155_1483(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 54 2e-05
AM778958_225(AM778958|pid:none) Microcystis aeruginosa PCC 7806 ... 53 3e-05
AC1838(AC1838) hypothetical protein all0251 [imported] - Nostoc ... 53 3e-05
AE017333_3132(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 53 3e-05
CP000117_2726(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 53 3e-05
CP000038_171(CP000038|pid:none) Shigella sonnei Ss046, complete ... 53 3e-05
CP001124_3674(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 53 3e-05
CP000036_147(CP000036|pid:none) Shigella boydii Sb227, complete ... 53 3e-05
AB1838(AB1838) hypothetical protein all0250 [imported] - Nostoc ... 52 4e-05
CP000903_2295(CP000903|pid:none) Bacillus weihenstephanensis KBA... 52 4e-05
AE009441_2266(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 52 4e-05
(P37049) RecName: Full=Phosphodiesterase yaeI; EC=3.1.4... 52 4e-05
CP001472_1012(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 52 8e-05
AP009510_723(AP009510|pid:none) Uncultured Termite group 1 bacte... 50 2e-04
CP000155_4663(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 50 2e-04
CP000113_6221(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 50 3e-04
CP001287_1117(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 49 4e-04
AP009552_4642(AP009552|pid:none) Microcystis aeruginosa NIES-843... 49 4e-04
BA000012_3009(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 49 4e-04
CT573071_1220(CT573071|pid:none) Kuenenia stuttgartiensis genome... 49 5e-04
CP000568_217(CP000568|pid:none) Clostridium thermocellum ATCC 27... 49 6e-04
AE005176_2188(AE005176|pid:none) Lactococcus lactis subsp. lacti... 49 6e-04
CP001336_1242(CP001336|pid:none) Desulfitobacterium hafniense DC... 49 6e-04
CP001186_2349(CP001186|pid:none) Bacillus cereus G9842, complete... 48 8e-04
AE016877_2327(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 48 8e-04
CP000227_2317(CP000227|pid:none) Bacillus cereus Q1, complete ge... 48 8e-04
CP000875_3572(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 48 0.001
AE017262_2118(AE017262|pid:none) Listeria monocytogenes str. 4b ... 48 0.001
AM180355_3696(AM180355|pid:none) Clostridium difficile 630 compl... 48 0.001
CP000853_407(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 48 0.001
CP001344_4754(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 48 0.001
AP008230_2246(AP008230|pid:none) Desulfitobacterium hafniense Y5... 47 0.001
AE010300_3163(AE010300|pid:none) Leptospira interrogans serovar ... 47 0.001
CP000930_360(CP000930|pid:none) Heliobacterium modesticaldum Ice... 47 0.001
CP000660_1575(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 47 0.001
CP001078_1885(CP001078|pid:none) Clostridium botulinum E3 str. A... 47 0.001
CP000628_2794(CP000628|pid:none) Agrobacterium radiobacter K84 c... 47 0.002
CP000806_2816(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 47 0.002
(Q9ZM43) RecName: Full=Uncharacterized metallophosphoesterase jh... 47 0.002
CP001037_150(CP001037|pid:none) Nostoc punctiforme PCC 73102, co... 47 0.002
AH1708(AH1708) probable phosphoesterase (EC 3.1.-.-) lin2211 [si... 47 0.002
CP000102_1422(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 47 0.002
CR543861_2707(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 46 0.003
CP001275_1146(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 46 0.003
CP000633_2640(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 46 0.003
AM406671_888(AM406671|pid:none) Lactococcus lactis subsp. cremor... 46 0.003
CP000246_361(CP000246|pid:none) Clostridium perfringens ATCC 131... 46 0.004
BA000045_3608(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 45 0.005
BA000043_1853(BA000043|pid:none) Geobacillus kaustophilus HTA426... 45 0.005
AP008955_2355(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 45 0.005
CP000875_1195(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 45 0.005
BA000043_1043(BA000043|pid:none) Geobacillus kaustophilus HTA426... 45 0.007
CP000113_399(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 45 0.007
CP001056_2076(CP001056|pid:none) Clostridium botulinum B str. Ek... 45 0.007
CP000113_3978(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 45 0.007
CP000140_3558(CP000140|pid:none) Parabacteroides distasonis ATCC... 45 0.009
EF531339_38(EF531339|pid:none) Candidatus Chloracidobacterium th... 45 0.009
AM746676_8092(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 44 0.012
BX571660_216(BX571660|pid:none) Wolinella succinogenes, complete... 44 0.012
CP000361_425(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 44 0.012
CP000514_3366(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 44 0.012
CP000909_1986(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 44 0.016
CP001364_2143(CP001364|pid:none) Chloroflexus sp. Y-400-fl, comp... 44 0.016
CP001074_3672(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 44 0.016
CP001071_1868(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 44 0.016
BX248354_286(BX248354|pid:none) Corynebacterium diphtheriae grav... 44 0.016
CP000471_2371(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 44 0.016
CP001280_1826(CP001280|pid:none) Methylocella silvestris BL2, co... 44 0.021
AE008691_1017(AE008691|pid:none) Thermoanaerobacter tengcongensi... 44 0.021
CP000113_4096(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 44 0.021
AM236080_3994(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 44 0.021
CP001191_3186(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 44 0.021
CP001217_398(CP001217|pid:none) Helicobacter pylori P12, complet... 44 0.021
CP000133_3435(CP000133|pid:none) Rhizobium etli CFN 42, complete... 44 0.021
AE005176_1600(AE005176|pid:none) Lactococcus lactis subsp. lacti... 43 0.027
BX950851_1887(BX950851|pid:none) Erwinia carotovora subsp. atros... 43 0.027
CP001001_2795(CP001001|pid:none) Methylobacterium radiotolerans ... 43 0.035
CP000568_1874(CP000568|pid:none) Clostridium thermocellum ATCC 2... 43 0.035
CU695239_429(CU695239|pid:none) Ralstonia solanacearum strain Mo... 43 0.035
CP000633_1245(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 43 0.035
CP000557_894(CP000557|pid:none) Geobacillus thermodenitrificans ... 43 0.035
CP001072_400(CP001072|pid:none) Helicobacter pylori Shi470, comp... 42 0.046
CP000922_1056(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 42 0.046
CP000615_1905(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 42 0.060
CP000379_661(CP000379|pid:none) Burkholderia cenocepacia AU 1054... 42 0.078
CP001510_2890(CP001510|pid:none) Methylobacterium extorquens AM1... 42 0.078
AM746676_7590(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.078
CP000776_1310(CP000776|pid:none) Campylobacter hominis ATCC BAA-... 41 0.10
AM746676_7683(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 41 0.10
AY281352_2(AY281352|pid:none) Uncultured Acidobacteria bacterium... 41 0.10
CP000148_2619(CP000148|pid:none) Geobacter metallireducens GS-15... 41 0.10
CP001026_1454(CP001026|pid:none) Burkholderia ambifaria MC40-6 c... 41 0.10
CP000025_906(CP000025|pid:none) Campylobacter jejuni RM1221, com... 41 0.10
CP001071_1257(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 41 0.13
CP000383_820(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 41 0.13
CP001349_5303(CP001349|pid:none) Methylobacterium nodulans ORS 2... 41 0.13
AM889285_2785(AM889285|pid:none) Gluconacetobacter diazotrophicu... 41 0.13
CP001229_1090(CP001229|pid:none) Sulfurihydrogenibium azorense A... 41 0.13
AE015925_161(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 41 0.13
CP000085_1502(CP000085|pid:none) Burkholderia thailandensis E264... 41 0.13
AE017194_3723(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 40 0.17
CP001186_3683(CP001186|pid:none) Bacillus cereus G9842, complete... 40 0.17
(Q58719) RecName: Full=DNA double-strand break repair protein mr... 40 0.17
CP001510_4852(CP001510|pid:none) Methylobacterium extorquens AM1... 40 0.17
CP001055_1450(CP001055|pid:none) Elusimicrobium minutum Pei191, ... 40 0.17
CP001022_245(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 40 0.17
AL591688_2757(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 40 0.17
CP000814_791(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 40 0.17
CP000152_1056(CP000152|pid:none) Burkholderia sp. 383 chromosome... 40 0.17
AM260522_1045(AM260522|pid:none) Helicobacter acinonychis str. S... 40 0.23
CP001186_1009(CP001186|pid:none) Bacillus cereus G9842, complete... 40 0.23
CP000908_2870(CP000908|pid:none) Methylobacterium extorquens PA1... 40 0.23
AE017355_3431(AE017355|pid:none) Bacillus thuringiensis serovar ... 40 0.30
CP001407_3644(CP001407|pid:none) Bacillus cereus 03BB102, comple... 40 0.30
CP000112_2408(CP000112|pid:none) Desulfovibrio desulfuricans G20... 40 0.30
CP001176_1044(CP001176|pid:none) Bacillus cereus B4264, complete... 40 0.30
AM746676_1832(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.30
CP001016_934(CP001016|pid:none) Beijerinckia indica subsp. indic... 40 0.30
CP000828_5059(CP000828|pid:none) Acaryochloris marina MBIC11017,... 40 0.30
(P16449) RecName: Full=KinB-signaling pathway activation protein... 40 0.30
CP000885_2064(CP000885|pid:none) Clostridium phytofermentans ISD... 40 0.30
CP000360_2161(CP000360|pid:none) Acidobacteria bacterium Ellin34... 39 0.39
AE016879_3534(AE016879|pid:none) Bacillus anthracis str. Ames, c... 39 0.39
CP000140_3559(CP000140|pid:none) Parabacteroides distasonis ATCC... 39 0.39
(O34870) RecName: Full=Uncharacterized metallophosphoesterase yk... 39 0.39
CP000767_624(CP000767|pid:none) Campylobacter curvus 525.92, com... 39 0.39
AP009044_366(AP009044|pid:none) Corynebacterium glutamicum R DNA... 39 0.39
CP000724_4386(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.39
AE008384_540(AE008384|pid:none) Methanosarcina mazei strain Goe1... 39 0.51
CP001189_1029(CP001189|pid:none) Gluconacetobacter diazotrophicu... 39 0.51
CP001176_3939(CP001176|pid:none) Bacillus cereus B4264, complete... 39 0.51
(O84467) RecName: Full=Uncharacterized metallophosphoesterase CT... 39 0.51
CP000721_1759(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 39 0.51
CP000792_532(CP000792|pid:none) Campylobacter concisus 13826, co... 39 0.66
CP000352_3206(CP000352|pid:none) Ralstonia metallidurans CH34, c... 39 0.66
CP000271_1145(CP000271|pid:none) Burkholderia xenovorans LB400 c... 39 0.66
AM398681_286(AM398681|pid:none) Flavobacterium psychrophilum JIP... 39 0.66
CP000903_3396(CP000903|pid:none) Bacillus weihenstephanensis KBA... 39 0.66
AE017194_1206(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 39 0.66
CP001186_4008(CP001186|pid:none) Bacillus cereus G9842, complete... 39 0.66
AP008955_1442(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 38 0.87
AE017194_4007(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 38 0.87
CP001283_1101(CP001283|pid:none) Bacillus cereus AH820, complete... 38 0.87
CP001407_1009(CP001407|pid:none) Bacillus cereus 03BB102, comple... 38 0.87
CP001053_794(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 38 0.87
CP001601_199(CP001601|pid:none) Corynebacterium aurimucosum ATCC... 38 0.87
AE017355_987(AE017355|pid:none) Bacillus thuringiensis serovar k... 38 1.1
AE016877_988(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 38 1.1
CP001349_710(CP001349|pid:none) Methylobacterium nodulans ORS 20... 38 1.1
CP000738_2606(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 38 1.1
AP006627_958(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, co... 38 1.1
(Q9PJT2) RecName: Full=Uncharacterized metallophosphoesterase TC... 38 1.1
CP001002_193(CP001002|pid:none) Methylobacterium radiotolerans J... 38 1.1
CP000113_863(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 38 1.1
CP000227_1074(CP000227|pid:none) Bacillus cereus Q1, complete ge... 37 1.5
AE016830_1143(AE016830|pid:none) Enterococcus faecalis V583, com... 37 1.5
BA000023_668(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 37 1.5
CP000721_1703(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 37 1.5
AE008384_3285(AE008384|pid:none) Methanosarcina mazei strain Goe... 37 1.5
CP000251_1140(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 37 1.9
CP000001_3447(CP000001|pid:none) Bacillus cereus E33L, complete ... 37 1.9
CP000487_1101(CP000487|pid:none) Campylobacter fetus subsp. fetu... 37 2.5
AL939121_196(AL939121|pid:none) Streptomyces coelicolor A3(2) co... 37 2.5
CP000885_1053(CP000885|pid:none) Clostridium phytofermentans ISD... 37 2.5
CP000140_2902(CP000140|pid:none) Parabacteroides distasonis ATCC... 37 2.5
CP001029_2993(CP001029|pid:none) Methylobacterium populi BJ001, ... 37 2.5
CP000011_1285(CP000011|pid:none) Burkholderia mallei ATCC 23344 ... 36 3.3
CU234118_1082(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 36 3.3
CP000922_1887(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 36 3.3
CP000571_1289(CP000571|pid:none) Burkholderia pseudomallei 668 c... 36 3.3
CP000125_2478(CP000125|pid:none) Burkholderia pseudomallei 1710b... 36 3.3
CP001177_3925(CP001177|pid:none) Bacillus cereus AH187, complete... 36 3.3
CP000573_1215(CP000573|pid:none) Burkholderia pseudomallei 1106a... 36 3.3
CR382131_958(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 36 3.3
BX294148_30(BX294148|pid:none) Rhodopirellula baltica SH 1 compl... 36 3.3
CP000557_2135(CP000557|pid:none) Geobacillus thermodenitrificans... 36 4.3
CP001189_2526(CP001189|pid:none) Gluconacetobacter diazotrophicu... 36 4.3
CP001389_2733(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 36 4.3
CP001147_630(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 35 5.6
CP000348_1337(CP000348|pid:none) Leptospira borgpetersenii serov... 35 5.6
CP000001_3711(CP000001|pid:none) Bacillus cereus E33L, complete ... 35 5.6
CP000108_1591(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 35 5.6
CP001358_1760(CP001358|pid:none) Desulfovibrio desulfuricans sub... 35 7.3
CP000058_2642(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 35 7.3
CP000817_820(CP000817|pid:none) Lysinibacillus sphaericus C3-41,... 35 7.3
AP008955_4763(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 35 7.3
AK034092_1(AK034092|pid:none) Mus musculus adult male diencephal... 35 7.3
AP006840_1410(AP006840|pid:none) Symbiobacterium thermophilum IA... 35 7.3
BA000022_2394(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 35 7.3
CP000485_3423(CP000485|pid:none) Bacillus thuringiensis str. Al ... 35 7.3
CP001277_174(CP001277|pid:none) Candidatus Hamiltonella defensa ... 35 7.3
(P39980) RecName: Full=Siderophore iron transporter 1; AltName: ... 35 7.3
AL844509_467(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.3
CT978603_192(CT978603|pid:none) Synechococcus sp. RCC307 genomic... 35 7.3
CP001230_1600(CP001230|pid:none) Persephonella marina EX-H1, com... 35 9.6
CP001131_4102(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 35 9.6
CP000569_977(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 35 9.6
CP001359_4124(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 35 9.6
AE016879_3869(AE016879|pid:none) Bacillus anthracis str. Ames, c... 35 9.6
AP009049_30(AP009049|pid:none) Clostridium kluyveri NBRC 12016 D... 35 9.6

>BX842655_273(BX842655|pid:none) Bdellovibrio bacteriovorus complete
genome, strain HD100; segment 10/11.
Length = 278

Score = 60.5 bits (145), Expect = 2e-07
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 2/208 (0%)
Frame = +1

Query: 793 PDLVLLTGDFFTSESFNPENTLEIALAPLKKLPHXK-VFACVGNHDLKEGCMEIXEXALX 969
PD+++ GDF S + LKKL V+A +GNHD G ++ + AL
Sbjct: 82 PDIIVFLGDFVAQRS---AEAFVKSAHQLKKLEAPLGVYAVLGNHDWWSGKTDVVQ-ALT 137

Query: 970 XIQCPLLIDQSVLVETRIGKIQITGF-DYRNKARQQHIHEVCSAYPPIQGIPRIALLHDP 1146
L+ +Q + ++ + ++++ G DY +H+ + +A+ + IP IA+ H+P
Sbjct: 138 TNNVQLIDNQHIDLKWKGAQLRLIGLGDYWE---DEHLWDYIAAHKASE-IPSIAITHNP 193

Query: 1147 GSFKFIPTDYGCITFSGHTHGGQIGIRSDLLSLTMVGITGIPDYSLWRNGNNYLYVHTGQ 1326
F IP+D + +GHTHGGQ+ + Y L ++L V +G
Sbjct: 194 DVFPRIPSDIS-LVLAGHTHGGQVNFPIINSPIVPSQFQDRYRYGLIHEDGHHLLVTSGT 252

Query: 1327 GCRSMLGTMVLRVGVPAEDSLLQVYFES 1410
G + +R VP E + +V F S
Sbjct: 253 G----NSILPVRFRVPPEVVIAEVAFTS 276

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,258,159,014
Number of extensions: 46083543
Number of successful extensions: 103408
Number of sequences better than 10.0: 206
Number of HSP's gapped: 103159
Number of HSP's successfully gapped: 207
Length of query: 509
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 376
Effective length of database: 620,718,517
Effective search space: 233390162392
Effective search space used: 233390162392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.69 gvh: 0.24 alm: 0.18 top: 0.63 tms: 0.33 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

40.0 %: plasma membrane
20.0 %: endoplasmic reticulum
12.0 %: vacuolar
12.0 %: nuclear
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for Contig-U12125-1 is pla

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0