| Contig-U12121-1 |
| Contig ID |
Contig-U12121-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1331 |
| Chromosome number (1..6, M) |
- |
| Chromosome length |
- |
| Start point |
- |
| End point |
- |
| Strand (PLUS/MINUS) |
- |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U12121 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.29 |
| Homology vs DNA |
Query= Contig-U12121-1 (Contig-U12121-1Q) /CSM_Contig/Contig-U12121-1Q.Seq.d
(1341 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ397836) Dictyostelium discoideum cDNA clone:dds47g23, 5' ... 1130 0.0 1
(BJ409044) Dictyostelium discoideum cDNA clone:dds47g23, 3' ... 1023 0.0 2
(AC114123) Rattus norvegicus clone CH230-30G21, WORKING DRAF... 42 0.014 7
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 0.021 7
(BX927404) Zebrafish DNA sequence from clone DKEY-18F7 in li... 40 0.056 5
(AC215430) Solanum lycopersicum chromosome 2 clone C02HBa023... 52 0.056 1
(AC215357) Solanum lycopersicum chromosome 2 clone C02HBa001... 52 0.056 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.064 15
(AC225830) Pan troglodytes chromosome 7 clone CH251-61K15, W... 34 0.13 7
(AL035476) Plasmodium falciparum MAL4P3. 48 0.22 11
(X56461) Murine Hox2.2 mRNA for a homeobox protein. 50 0.22 1
(L36070) Mus musculus homeobox protein (Hoxb-5) gene, 5' end. 50 0.22 1
(J03782) Mouse homeobox (Hox-2.2) containing protein gene, c... 50 0.22 1
(BC016893) Mus musculus homeo box B6, mRNA (cDNA clone MGC:1... 50 0.22 1
(AL645478) Mouse DNA sequence from clone RP23-85A17 on chrom... 50 0.22 1
(AC011194) Mus musculus chromosome 11, clone RP23-196F5, com... 50 0.22 1
(AC010443) Homo sapiens chromosome 5 clone CTD-2231H16, comp... 50 0.22 1
(AC121401) Rattus norvegicus clone CH230-286C16, WORKING DRA... 50 0.22 1
(AC096218) Rattus norvegicus clone CH230-23P7, *** SEQUENCIN... 50 0.22 1
(AC022233) Mus musculus clone RP23-386O17, *** SEQUENCING IN... 50 0.22 1
(AK011622) Mus musculus 10 days embryo whole body cDNA, RIKE... 50 0.22 1
(ER398438) 1095349020641 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.22 1
(AG191037) Pan troglodytes DNA, clone: RP43-066M24.TJ. 50 0.22 1
(AV114176) Mus musculus 10-day embryo cDNA, partial sequence... 50 0.22 1
(AV023717) Mus musculus 18-day embryo cDNA, partial sequence... 50 0.22 1
(AV022894) Mus musculus 18-day embryo cDNA, partial sequence... 50 0.22 1
(CX587997) TTE00028892 Amplicon Express - Conjugative Form T... 50 0.22 1
(CN544073) UI-R-EP0-cnx-m-21-0-UI.s1 UI-R-EP0 Rattus norvegi... 50 0.22 1
(CK472161) AGENCOURT_17619593 NIH_MGC_236 Rattus norvegicus ... 50 0.22 1
(CB773224) AMGNNUC:HRNP2-00001-C10-A hrnp2 (10657) Rattus no... 50 0.22 1
(BQ199582) UI-R-EB0-clc-l-12-0-UI.s1 UI-R-EB0 Rattus norvegi... 50 0.22 1
(BQ175999) UI-M-DJ2-bwf-e-08-0-UI.s1 NIH_BMAP_DJ2 Mus muscul... 50 0.22 1
(AI385768) mg85a04.x1 Soares mouse embryo NbME13.5 14.5 Mus ... 50 0.22 1
(AA998408) UI-R-C0-ia-d-06-0-UI.s1 UI-R-C0 Rattus norvegicus... 50 0.22 1
(BI303863) UI-R-DS0-cjd-o-08-0-UI.s1 UI-R-DS0 Rattus norvegi... 50 0.22 1
(BF557982) UI-R-C0-ia-d-06-0-UI.r1 UI-R-C0 Rattus norvegicus... 50 0.22 1
(BF398170) UI-R-BS2-ben-c-03-0-UI.s1 UI-R-BS2 Rattus norvegi... 50 0.22 1
(BE948571) UI-M-BH3-awa-c-05-0-UI.s4 NIH_BMAP_M_S4 Mus muscu... 50 0.22 1
(BB450907) Mus musculus 12 days embryo spinal ganglion cDNA,... 50 0.22 1
(BB440792) Mus musculus 9 days embryo cDNA, RIKEN full-lengt... 50 0.22 1
(FF576291) TTEE180THB Tetrahymena thermophila conjugation cD... 50 0.22 1
(FF564925) TT1BF26TV Tetrahymena thermophila SB210 cDNA libr... 50 0.22 1
(FC043088) CATU38550.fwd CATU Aureococcus anophagefferens Si... 50 0.22 1
(FC019010) CATU20810.fwd CATU Aureococcus anophagefferens Si... 50 0.22 1
(EV826489) TT1DJ95TH Tetrahymena thermophila SB210 cDNA libr... 50 0.22 1
(BJ401228) Dictyostelium discoideum cDNA clone:dds22f15, 3' ... 34 0.26 3
(DQ020602) Gonometa postica haplotype h10_145_2 AT-rich regi... 42 0.31 2
(DQ020601) Gonometa postica haplotype h9_127_3 AT-rich regio... 42 0.31 2
(DQ020597) Gonometa postica haplotype h5_P4_1 AT-rich region... 42 0.31 2
(DQ020600) Gonometa postica haplotype h8_147_2 AT-rich regio... 42 0.31 2
(DQ020596) Gonometa postica haplotype h4_RE57 AT-rich region... 42 0.31 2
(DQ020609) Gonometa postica haplotype h17_75_1 AT-rich regio... 42 0.32 2
(DQ020607) Gonometa postica haplotype h15_P203 AT-rich regio... 42 0.32 2
(DQ020606) Gonometa postica haplotype h14_128_3 AT-rich regi... 42 0.32 2
(DQ020605) Gonometa postica haplotype h13_PW11 AT-rich regio... 42 0.32 2
(DQ020599) Gonometa postica haplotype h7_149_4 AT-rich regio... 42 0.32 2
(DQ020598) Gonometa postica haplotype h6_141_1 AT-rich regio... 42 0.32 2
(DQ020594) Gonometa postica haplotype h2_121_7 AT-rich regio... 42 0.32 2
(DQ020610) Gonometa postica haplotype h18_WS1_2 AT-rich regi... 42 0.32 2
(DQ020608) Gonometa postica haplotype h16_PF38 AT-rich regio... 42 0.32 2
(DQ020603) Gonometa postica haplotype h11_148_6 AT-rich regi... 42 0.32 2
(DQ020595) Gonometa postica haplotype h3_54_2 AT-rich region... 42 0.32 2
(DQ020611) Gonometa postica haplotype h19_100_3 AT-rich regi... 42 0.32 2
(DQ020604) Gonometa postica haplotype h12_25_4 AT-rich regio... 42 0.32 2
(DQ020593) Gonometa postica haplotype h1_154_2 AT-rich regio... 42 0.32 2
(AC087326) Trypanosoma brucei chromosome 4 clone RPCI93-30O2... 42 0.35 2
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ... 34 0.40 12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 38 0.40 9
(EI289469) GM_WBc0010I09.r GM_WBc Glycine max genomic clone ... 34 0.42 3
(BD452554) Diagnosis of Diseases Associated with tumor suppr... 34 0.47 6
(AX348543) Sequence 1 from Patent WO0202807. 34 0.47 6
(AX344154) Sequence 1 from Patent WO0200926. 34 0.47 6
(AX251033) Sequence 1 from Patent WO0168912. 34 0.47 6
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 0.62 14
(AE001375) Plasmodium falciparum 3D7 chromosome 2 section 12... 40 0.84 4
(CT827816) Pig DNA sequence from clone CH242-102G18 on chrom... 48 0.87 1
(AC129959) Bos taurus, clone RP42-518P7, complete sequence. 48 0.87 1
(AC129971) Felis catus clone RP86-250M1, *** SEQUENCING IN P... 48 0.87 1
(AC129965) Sus scrofa clone RP44-36D8, *** SEQUENCING IN PRO... 48 0.87 1
(AC129955) Bos taurus clone RP42-225J6, *** SEQUENCING IN PR... 48 0.87 1
(CU862050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.87 1
(CU856160) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.87 1
(CU633244) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.87 1
(AC230543) Bos taurus clone CH240-505J6, WORKING DRAFT SEQUE... 48 0.87 1
(AC219905) Bos taurus clone CH240-318N13, WORKING DRAFT SEQU... 48 0.87 1
(CT432438) Sus scrofa genomic clone CH242-507O23, genomic su... 48 0.87 1
(BZ884110) CH240_241B22.TV CHORI-240 Bos taurus genomic clon... 48 0.87 1
(EE851701) 021030OSPA1029011HT OSPA Ovis aries cDNA, mRNA se... 48 0.87 1
(EE337837) LB02037.CR.1_A12 GC_BGC-20 Bos taurus cDNA clone ... 48 0.87 1
(DV827200) LB0206.CR_N04 GC_BGC-20 Bos taurus cDNA clone IMA... 48 0.87 1
(DV824378) LB02018.CR_C24 GC_BGC-20 Bos taurus cDNA clone IM... 48 0.87 1
(DN524972) 1268680 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 48 0.87 1
(DN133169) 996618 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence. 48 0.87 1
(DN130880) 1147475 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence. 48 0.87 1
(DN128267) 1142328 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence. 48 0.87 1
(CN166136) 997002 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence. 48 0.87 1
(CB533054) 757625 MARC 6BOV Bos taurus cDNA 3', mRNA sequence. 48 0.87 1
(CB222869) 1IL32H05 Bos taurus Ileum #1 library Bos taurus c... 48 0.87 1
(BX676130) Sus Scrofa library (scac) clone scac0036.o.05, 3p... 48 0.87 1
(BG385238) 306885 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence. 48 0.87 1
>(BJ397836) Dictyostelium discoideum cDNA clone:dds47g23, 5' end,
single read.
Length = 572
Score = 1130 bits (570), Expect = 0.0
Identities = 570/570 (100%)
Strand = Plus / Plus
Query: 1 ttaataatcaacaaatattaatattattaataatgattcagataatgaagagttattaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaataatcaacaaatattaatattattaataatgattcagataatgaagagttattaac 60
Query: 61 aacagttaatcattctaaaccaccaccaaatgaatctaaaagaggtgaattggtagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacagttaatcattctaaaccaccaccaaatgaatctaaaagaggtgaattggtagagag 120
Query: 121 tccagtttctaaacaacaatataaacactttattaaacaatttaaattaaaagaaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccagtttctaaacaacaatataaacactttattaaacaatttaaattaaaagaaaaaga 180
Query: 181 aggattagagattgcaatggaatttgcttttcaatcattaagtgttttaccagaaaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggattagagattgcaatggaatttgcttttcaatcattaagtgttttaccagaaaaagt 240
Query: 241 tcattggagagtttatttagaattggcagatttggctaaccgtcaaaataaccttaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcattggagagtttatttagaattggcagatttggctaaccgtcaaaataaccttaagtt 300
Query: 301 ggctcgtaaattctatagaaaggttacaagtactcaaccctatattagtcaaggttggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggctcgtaaattctatagaaaggttacaagtactcaaccctatattagtcaaggttggtt 360
Query: 361 agagtatgctaaaatggaggaagattatggtcgtcttgagaaatgtcaaaagatacttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agagtatgctaaaatggaggaagattatggtcgtcttgagaaatgtcaaaagatacttca 420
Query: 421 attgggtcttaaacattgtccattcaatgagagtttattgattaaaggtattcgtcatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attgggtcttaaacattgtccattcaatgagagtttattgattaaaggtattcgtcatga 480
Query: 481 agagaaaatggataatttagagggagcaagagcattactttctcaactacgtgatcaatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agagaaaatggataatttagagggagcaagagcattactttctcaactacgtgatcaatc 540
Query: 541 aatctataaaacttggagagctgtaatgga 570
||||||||||||||||||||||||||||||
Sbjct: 541 aatctataaaacttggagagctgtaatgga 570
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,630,481,727
Number of extensions: 103374635
Number of successful extensions: 11475773
Number of sequences better than 10.0: 207
Length of query: 1341
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1317
Effective length of database: 97,308,875,965
Effective search space: 128155789645905
Effective search space used: 128155789645905
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 2 |
| Homology vs Protein |
Query= Contig-U12121-1 (Contig-U12121-1Q) /CSM_Contig/Contig-U12121-1Q.Seq.d
(1341 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC068923_2(AC068923|pid:none) Oryza sativa chromosome 10 BAC OSJ... 50 5e-11
AP008216_963(AP008216|pid:none) Oryza sativa (japonica cultivar-... 46 5e-11
AF071527_14(AF071527|pid:none) Arabidopsis thaliana BAC F9H3, fr... 50 2e-10
FN357570_3(FN357570|pid:none) Schistosoma mansoni genome sequenc... 45 6e-08
BC105318_1(BC105318|pid:none) Bos taurus PRP6 pre-mRNA processin... 47 1e-07
AF026031_1(AF026031|pid:none) Homo sapiens putative mitochondria... 47 2e-07
(O94906) RecName: Full=Pre-mRNA-processing factor 6; AltName: Fu... 47 2e-07
CQ834640_1(CQ834640|pid:none) Sequence 511 from Patent WO2004058... 45 2e-07
BC079686_1(BC079686|pid:none) Xenopus laevis MGC80263 protein, m... 45 2e-07
AK001554_1(AK001554|pid:none) Homo sapiens cDNA FLJ10692 fis, cl... 47 3e-07
AC114265_2(AC114265|pid:none) Dictyostelium discoideum chromosom... 49 6e-07
BC091611_1(BC091611|pid:none) Xenopus tropicalis MGC97740 protei... 44 6e-07
CR858352_1(CR858352|pid:none) Pongo abelii mRNA; cDNA DKFZp459N2... 44 7e-07
AE014296_3261(AE014296|pid:none) Drosophila melanogaster chromos... 47 7e-07
(Q54VF7) RecName: Full=Putative uncharacterized protein DDB_G028... 58 9e-07
(Q5K654) RecName: Full=Pre-mRNA-splicing factor CLF1; &AF443189... 50 9e-07
CR940347_430(CR940347|pid:none) Theileria annulata strain Ankara... 44 2e-06
BC066556_1(BC066556|pid:none) Danio rerio c20orf14 homolog (H. s... 51 1e-04
GN099344_1(GN099344|pid:none) Sequence 4125 from Patent WO200903... 45 1e-04
CP000600_295(CP000600|pid:none) Ostreococcus lucimarinus CCE9901... 50 2e-04
AP008207_927(AP008207|pid:none) Oryza sativa (japonica cultivar-... 50 2e-04
AM920437_805(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 44 2e-04
CU928173_120(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 50 2e-04
AM920431_494(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 41 5e-04
AM452165_1(AM452165|pid:none) Vitis vinifera contig VV78X185891.... 49 5e-04
(Q5BDX1) RecName: Full=Pre-mRNA-splicing factor clf1; 49 5e-04
CP001331_35(CP001331|pid:none) Micromonas sp. RCC299 chromosome ... 48 7e-04
CR380954_435(CR380954|pid:none) Candida glabrata strain CBS138 c... 48 7e-04
(Q4WT84) RecName: Full=Pre-mRNA-splicing factor clf1; 48 0.001
GN099348_1(GN099348|pid:none) Sequence 4129 from Patent WO200903... 48 0.001
CU640366_69(CU640366|pid:none) Podospora anserina genomic DNA ch... 47 0.002
BX294012_44(BX294012|pid:none) Neurospora crassa DNA linkage gro... 42 0.002
AK145461_1(AK145461|pid:none) Mus musculus 1 cell embryo 1 cell ... 47 0.002
AE014186_91(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 47 0.002
CP001291_2325(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 47 0.002
BC128779_1(BC128779|pid:none) Rattus norvegicus PRP6 pre-mRNA sp... 47 0.002
(Q12381) RecName: Full=Pre-mRNA-splicing factor prp1; &AL021838... 44 0.004
CP000393_407(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 44 0.010
(Q527H0) RecName: Full=Pre-mRNA-splicing factor CLF1; &EU826017... 44 0.013
(Q4PB37) RecName: Full=Pre-mRNA-splicing factor CLF1; 43 0.023
AC144617_5(AC144617|pid:none) Medicago truncatula clone mth2-7m9... 43 0.023
AK226702_1(AK226702|pid:none) Arabidopsis thaliana mRNA for puta... 43 0.023
AP007154_646(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 43 0.023
AE016815_111(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 43 0.030
AE017226_1525(AE017226|pid:none) Treponema denticola ATCC 35405,... 43 0.030
FN357570_4(FN357570|pid:none) Schistosoma mansoni genome sequenc... 42 0.039
CP001291_1331(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 42 0.039
AM114763_1(AM114763|pid:none) Platynereis dumerilii mRNA for cro... 42 0.050
CU633867_95(CU633867|pid:none) Podospora anserina genomic DNA ch... 42 0.050
CP000599_92(CP000599|pid:none) Ostreococcus lucimarinus CCE9901 ... 42 0.066
(Q9HF03) RecName: Full=Pre-mRNA-splicing factor CLF1; AltName: F... 41 0.086
CP000503_3566(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 41 0.086
(Q5KNE9) RecName: Full=Pre-mRNA-splicing factor CLF1; &AE017341... 41 0.086
CP001326_225(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 41 0.11
CU928167_310(CU928167|pid:none) Kluyveromyces thermotolerans str... 41 0.11
AP009389_37(AP009389|pid:none) Pelotomaculum thermopropionicum S... 41 0.11
AM180355_1211(AM180355|pid:none) Clostridium difficile 630 compl... 40 0.15
BC044369_1(BC044369|pid:none) Danio rerio zgc:55327, mRNA (cDNA ... 40 0.25
AM440961_1(AM440961|pid:none) Vitis vinifera contig VV78X037392.... 40 0.25
AL132980_15(AL132980|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.33
CP001098_1178(CP001098|pid:none) Halothermothrix orenii H 168, c... 39 0.33
CP000582_132(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.43
AF111802_1(AF111802|pid:none) Homo sapiens MSTP021 (MST021) mRNA... 39 0.43
AK023728_1(AK023728|pid:none) Homo sapiens cDNA FLJ13666 fis, cl... 39 0.43
(Q9H8F8) RecName: Full=Crooked neck-like protein 1; AltName: Ful... 39 0.43
AF318302_1(AF318302|pid:none) Homo sapiens CGI-201 protein, shor... 39 0.43
AE017341_76(AE017341|pid:none) Cryptococcus neoformans var. neof... 39 0.43
CP000828_2756(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.43
CR940348_485(CR940348|pid:none) Theileria annulata strain Ankara... 39 0.56
AE014297_4434(AE014297|pid:none) Drosophila melanogaster chromos... 38 0.73
(Q7KRW8) RecName: Full=Pre-mRNA-processing factor 39; AltName: F... 38 0.73
AB016871_5(AB016871|pid:none) Arabidopsis thaliana genomic DNA, ... 38 0.73
AF262041_2(AF262041|pid:none) Arabidopsis thaliana BAC T32B20. 38 0.73
BC139124_1(BC139124|pid:none) Mus musculus zinc finger, C3H1-typ... 38 0.73
AK172969_1(AK172969|pid:none) Mus musculus mRNA for mKIAA0546 pr... 38 0.73
AE001363_674(AE001363|pid:none) Chlamydophila pneumoniae CWL029,... 38 0.73
BC061510_1(BC061510|pid:none) Mus musculus zinc finger, C3H1-typ... 38 0.73
FN357416_3(FN357416|pid:none) Schistosoma mansoni genome sequenc... 37 1.6
CR954205_56(CR954205|pid:none) Ostreococcus tauri strain OTTH059... 37 1.6
AK125035_1(AK125035|pid:none) Homo sapiens cDNA FLJ43045 fis, cl... 37 1.6
CP000825_6(CP000825|pid:none) Prochlorococcus marinus str. MIT 9... 37 1.6
CP000544_1502(CP000544|pid:none) Halorhodospira halophila SL1, c... 37 1.6
AB011118_1(AB011118|pid:none) Homo sapiens mRNA for KIAA0546 pro... 37 1.6
(O60293) RecName: Full=Zinc finger C3H1 domain-containing protei... 37 1.6
CU928176_28(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 37 1.6
(Q8K2Z2) RecName: Full=Pre-mRNA-processing factor 39; AltName: F... 37 2.1
CU928165_17(CU928165|pid:none) Kluyveromyces thermotolerans stra... 37 2.1
AE000666_69(AE000666|pid:none) Methanothermobacter thermautotrop... 37 2.1
AE016795_2765(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 37 2.1
AF016441_4(AF016441|pid:none) Caenorhabditis elegans cosmid M03F... 36 2.8
(Q6CJK2) RecName: Full=Pre-mRNA-splicing factor CLF1; &CR382126... 36 2.8
BT069569_1(BT069569|pid:none) Zea mays full-length cDNA clone ZM... 36 2.8
CU928171_525(CU928171|pid:none) Kluyveromyces thermotolerans str... 36 2.8
AC166146_12(AC166146|pid:none) Medicago truncatula clone mth2-17... 36 2.8
CP001034_2465(CP001034|pid:none) Natranaerobius thermophilus JW/... 36 3.6
CR522870_112(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 36 3.6
AM473521_1(AM473521|pid:none) Vitis vinifera contig VV78X003108.... 36 3.6
CP000383_1618(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 36 3.6
CP000099_2958(CP000099|pid:none) Methanosarcina barkeri str. Fus... 36 3.6
CP000099_3513(CP000099|pid:none) Methanosarcina barkeri str. Fus... 36 3.6
CP001099_1614(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 35 4.7
BX897699_410(BX897699|pid:none) Bartonella henselae strain Houst... 35 4.7
AY696178_1(AY696178|pid:none) Danio rerio O-GlcNAc transferase v... 35 6.2
AP009178_1564(AP009178|pid:none) Nitratiruptor sp. SB155-2 genom... 35 6.2
AY696180_1(AY696180|pid:none) Danio rerio O-GlcNAc transferase v... 35 6.2
AY696181_1(AY696181|pid:none) Danio rerio O-GlcNAc transferase v... 35 6.2
AY696179_1(AY696179|pid:none) Danio rerio O-GlcNAc transferase v... 35 6.2
CP001230_1906(CP001230|pid:none) Persephonella marina EX-H1, com... 35 6.2
CP000507_2290(CP000507|pid:none) Shewanella amazonensis SB2B, co... 35 6.2
AE008384_3110(AE008384|pid:none) Methanosarcina mazei strain Goe... 35 6.2
CP000745_130(CP000745|pid:none) Methanococcus maripaludis C7, co... 35 6.2
(Q1JPZ7) RecName: Full=Pre-mRNA-processing factor 39; AltName: F... 35 8.1
CR380957_263(CR380957|pid:none) Candida glabrata strain CBS138 c... 35 8.1
CP000903_1972(CP000903|pid:none) Bacillus weihenstephanensis KBA... 35 8.1
(Q4WXX4) RecName: Full=mRNA 3'-end-processing protein rna14; 35 8.1
BC125127_1(BC125127|pid:none) Homo sapiens PRP39 pre-mRNA proces... 35 8.1
AB026636_11(AB026636|pid:none) Arabidopsis thaliana genomic DNA,... 35 8.1
CR382126_182(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 35 8.1
AY093112_1(AY093112|pid:none) Arabidopsis thaliana unknown prote... 35 8.1
BC151372_1(BC151372|pid:none) Bos taurus similar to obscurin, cy... 35 8.1
AC135428_1(AC135428|pid:none) Oryza sativa (japonica cultivar-gr... 35 8.1
CP000127_1895(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 35 8.1
AK127277_1(AK127277|pid:none) Homo sapiens cDNA FLJ45344 fis, cl... 35 8.1
AE017198_935(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 35 8.1
(Q5VV63) RecName: Full=Attractin-like protein 1; Flags: Precurso... 35 8.1
AK028333_1(AK028333|pid:none) Mus musculus 12 days embryo embryo... 35 8.1
BC166723_1(BC166723|pid:none) Rattus norvegicus transmembrane an... 35 8.1
AB011106_1(AB011106|pid:none) Homo sapiens mRNA for KIAA0534 pro... 35 8.1
>AC068923_2(AC068923|pid:none) Oryza sativa chromosome 10 BAC
OSJNBa0017E08 genomic sequence, complete sequence.
&GN099354_1(GN099354|pid:none)
Length = 1039
Score = 46.2 bits (108), Expect(2) = 5e-11
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 1/165 (0%)
Frame = +1
Query: 604 FLESVLLEMRANNYEAAIKEAKESLKIHSGAGRLWAALIQLNQLKGVKSQLNVFKKALQF 783
+L +V E+R N + A ++L+ +G LWAA I++ K++ + K
Sbjct: 871 WLAAVRAELRHGNKKEADALLAKALQECPTSGILWAAAIEMVPRPQRKAKSSDAIKRCDH 930
Query: 784 VPKSGEVWCEGARIALNNNELREARRFLEFAIQFTPQFGDSFIELLRLEIMEKGPNCDIS 963
P V A++ ++ ++ +AR +L A+ P GD + + E+ N D
Sbjct: 931 DP---HVIAAVAKLFWHDRKVDKARSWLNRAVTLAPDIGDFWALYYKFELQHG--NADTQ 985
Query: 964 K-LEQLCINADPNYGFMWLHCTVCVLDSSRQVLRNAKKLLLEMTQ 1095
K + Q C+ A+P +G W T V +S + KK +L + Q
Sbjct: 986 KDVLQRCVAAEPKHGERWQAITKAVENSHLSIEALLKKAVLALGQ 1030
Score = 45.8 bits (107), Expect(2) = 5e-11
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = +2
Query: 248 RVYLELADLANRQNNLKLARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQLG 427
RV+++ A + N+ RK + P + WL +ME+ G K +++ +
Sbjct: 767 RVWMKSAIVERELGNVDEERKLLEEGLKLFPSFFKLWLMLGQMEDRLGHGSKAKEVYENA 826
Query: 428 LKHCPFNESLLIKGIRHEEKMDNLEGARALLSQLRDQS 541
LKHCP L + EEK++ L +RA+L+ R ++
Sbjct: 827 LKHCPSCIPLWLSLANLEEKINGLSKSRAVLTMARKKN 864
Score = 49.7 bits (117), Expect = 2e-04
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 287 NNLKLARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQLGLKHCPFNESLLIK 466
+++K AR + VT T P GW+ A++EE G+L+ ++++Q G + CP NE + ++
Sbjct: 380 SDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKLQVARQLIQRGCEECPTNEDVWVE 439
Query: 467 GIR 475
R
Sbjct: 440 ACR 442
Score = 39.3 bits (90), Expect = 0.33
Identities = 24/94 (25%), Positives = 43/94 (45%)
Frame = +2
Query: 245 WRVYLELADLANRQNNLKLARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQL 424
++++L L + +R + A++ Y P WL A +EE L K + +L +
Sbjct: 800 FKLWLMLGQMEDRLGHGSKAKEVYENALKHCPSCIPLWLSLANLEEKINGLSKSRAVLTM 859
Query: 425 GLKHCPFNESLLIKGIRHEEKMDNLEGARALLSQ 526
K P L + +R E + N + A ALL++
Sbjct: 860 ARKKNPATPELWLAAVRAELRHGNKKEADALLAK 893
Score = 37.0 bits (84), Expect = 1.6
Identities = 31/123 (25%), Positives = 52/123 (42%)
Frame = +2
Query: 170 KEKEGLEIAMEFAFQSLSVLPEKVHWRVYLELADLANRQNNLKLARKFYRKVTSTQPYIS 349
K++ +E A +LSV K ++L+ A L + RK + P
Sbjct: 642 KKRGSIETARAIYAHALSVFVSKKS--IWLKAAQLEKSHGTKESLYNLLRKAVTYNPRAE 699
Query: 350 QGWLEYAKMEEDYGRLEKCQKILQLGLKHCPFNESLLIKGIRHEEKMDNLEGARALLSQL 529
WL AK + G + + ILQ P +E + + + E + + E AR LLS+
Sbjct: 700 VLWLMSAKEKWLAGDVPAARAILQEAYASLPNSEEIWLAAFKLEFENNEPERARILLSKA 759
Query: 530 RDQ 538
R++
Sbjct: 760 RER 762
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,918,923,158
Number of extensions: 38459377
Number of successful extensions: 85831
Number of sequences better than 10.0: 128
Number of HSP's gapped: 85673
Number of HSP's successfully gapped: 295
Length of query: 447
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 315
Effective length of database: 623,955,076
Effective search space: 196545848940
Effective search space used: 196545848940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
1 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |