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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12119-1
Contig ID Contig-U12119-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12119-1 (Contig-U12119-1Q) /CSM_Contig/Contig-U12119-1Q.Seq.d
AAAAGATTATTAAATGAAAAAGAGAAAAAAGATAAAGAAATAGAAGGTCT
GATCAACAACAACATCAACAACAACAAAATATTGATCAACCAAAAGAAGG
TGAAGAAAATAAAGAAGTAGTTGGTGAAAATGGTGAAAATGGTGAAAATA
TTGTTGAACAACCAGAAATTCAAACATNTGAACTTTTANATGCAATTTCT
AAAGATCTTGGTGGGTTGGAGAGCGAATTATCAAAGAAAAGAGAAAGTTT
AAAAGAAAAAGAAAATGAAATTGAAAAGATTGATAAAATGCTTAAATCTG
ATTTAGGAGTTAATAATGTTTTCATTCCATTGTATAGTAAATGTTTTGAT
TTGGCTACTAAAGAGTACACTTACAGTGTTTGTCCATATGAAAAAGCATC
ACAAGGTCATACTAGTTTAGGTAAATTCGAATCATTTGGTGATAATGGTA
AAATGATGTTATTTGAAAATGGTCAACAATGTTGGGGTGGTCCAAAACGT
TCACTTAAAGTCCTTATGGAATGTGGTCAAGATAATGAATTATATGATGT
ACAAGAACCTGGTAAATGTGAATATACTATTAAATTTAAAACTCCAGTTT
TATGTAGTGAAGAACATTTAAAAATTTTAAGATTAGAAGGTGATCATTCT
TTATAAAAAAAAAATAAAATAAAAAAAAAA----------NNNNNNNNNN
ANAAAAANATAANAANATTTTNAATTTATTTTTAAAAAAANTTTAATTTA
NTTTATTTTANTTTATTAANAAAAANATNTTGGGGGGNTGGAGAGNGNAT
TTTCAAANAAAANANAAAGTTTTAAAGNAAAANAAAATGNAATTGAAAAN
ATTGATNAAANGNTTAAATTTGATTTAGGAGTTNATAANGNTTT
Gap gap included
Contig length 884
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 18775
End point 18006
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U12119
List of clone(s) 

est1=VFL540Z,1,663
est2=VSD144F,44,610
est3=VSE239Z,101,665
est4=SHL533F,128,680
est5=SHL533Z,681,875
Translated Amino Acid sequence 
kiik*krekr*rnrrsdqqqhqqqqnidqpkegeenkevvgengengeniveqpeiqtxe
llxaiskdlggleselskkreslkekeneiekidkmlksdlgvnnvfiplyskcfdlatk
eytysvcpyekasqghtslgkfesfgdngkmmlfengqqcwggpkrslkvlmecgqdnel
ydvqepgkceytikfktpvlcseehlkilrlegdhsl*KKNKIKKK---

---XXXXKXXXIXNLFLKKX*fxlfxfixkxxlggwrxxfqxkxkvlkxxkmxlkxlxkx
lnli*exixx
Translated Amino Acid sequence (All Frames) 
Frame A:
krllnekekkdkeieglinnninnnkilinqkkvkkikk*lvkmvkmvkillnnqkfkhx
nfxmqflkilvgwranyqrkekv*kkkkmklkrlikclnli*elimfsfhcivnvliwll
kstltvfvhmkkhhkvilv*vnsnhlvimvk*cylkmvnnvgvvqnvhlkslwnvvkimn
ymmyknlvnvnillnlklqfyvvkni*kf*d*kviilykkkik*kk---

---xxxxkxixxfxiyf*kxfnlxyfxllxkxxwgxgexifkxxxkf*xkxkxn*kx*xx
x*i*frsx*xf

Frame B:
kdy*mkkrkkikk*kv*stttstttky*stkrr*rk*rssw*kw*kw*kyc*ttrnsnx*
tfxcnf*rswwvgeriikekrkfkrkrk*n*kd**na*i*frs**cfhsiv**mf*fgy*
rvhlqclsi*ksitrsy*fr*iriiw**w*ndvi*kwstmlgwsktft*spygmwsr**i
i*ctrtw*m*iyy*i*nssfm**rtfknfkirr*sffikkk*nkkk---

---xxxxkx*xxfxfifkkxlixfilxy*xkxxggxexxfsxkxxsfkxkxnxiexidxx
xkfdlgvxxx

Frame C:
kiik*krekr*rnrrsdqqqhqqqqnidqpkegeenkevvgengengeniveqpeiqtxe
llxaiskdlggleselskkreslkekeneiekidkmlksdlgvnnvfiplyskcfdlatk
eytysvcpyekasqghtslgkfesfgdngkmmlfengqqcwggpkrslkvlmecgqdnel
ydvqepgkceytikfktpvlcseehlkilrlegdhsl*KKNKIKKK---

---XXXXKXXXIXNLFLKKX*fxlfxfixkxxlggwrxxfqxkxkvlkxxkmxlkxlxkx
lnli*exixx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12119-1 (Contig-U12119-1Q)
/CSM_Contig/Contig-U12119-1Q.Seq.d
         (894 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12119-1 (Contig-U12119-1Q) /CSM_Contig/Conti...   726  0.0
Contig-U13990-1 (Contig-U13990-1Q) /CSM_Contig/Conti...   252  6e-67
Contig-U05575-1 (Contig-U05575-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13882-1 (Contig-U13882-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U13376-1 (Contig-U13376-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11677-1 (Contig-U11677-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U01359-1 (Contig-U01359-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U00987-1 (Contig-U00987-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U12542-1 (Contig-U12542-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U12119-1 (Contig-U12119-1Q) /CSM_Contig/Contig-U12119-1Q.Seq.d
          Length = 894

 Score =  726 bits (366), Expect = 0.0
 Identities = 366/366 (100%)
 Strand = Plus / Plus

                                                                       
Query: 289 tgcttaaatctgatttaggagttaataatgttttcattccattgtatagtaaatgttttg 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgcttaaatctgatttaggagttaataatgttttcattccattgtatagtaaatgttttg 348

                                                                       
Query: 349 atttggctactaaagagtacacttacagtgtttgtccatatgaaaaagcatcacaaggtc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atttggctactaaagagtacacttacagtgtttgtccatatgaaaaagcatcacaaggtc 408

                                                                       
Query: 409 atactagtttaggtaaattcgaatcatttggtgataatggtaaaatgatgttatttgaaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 atactagtttaggtaaattcgaatcatttggtgataatggtaaaatgatgttatttgaaa 468

                                                                       
Query: 469 atggtcaacaatgttggggtggtccaaaacgttcacttaaagtccttatggaatgtggtc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atggtcaacaatgttggggtggtccaaaacgttcacttaaagtccttatggaatgtggtc 528

                                                                       
Query: 529 aagataatgaattatatgatgtacaagaacctggtaaatgtgaatatactattaaattta 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aagataatgaattatatgatgtacaagaacctggtaaatgtgaatatactattaaattta 588

                                                                       
Query: 589 aaactccagttttatgtagtgaagaacatttaaaaattttaagattagaaggtgatcatt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaactccagttttatgtagtgaagaacatttaaaaattttaagattagaaggtgatcatt 648

                 
Query: 649 ctttat 654
           ||||||
Sbjct: 649 ctttat 654


 Score =  293 bits (148), Expect = 2e-79
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                       
Query: 78  aatattgatcaaccaaaagaaggtgaagaaaataaagaagtagttggtgaaaatggtgaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  aatattgatcaaccaaaagaaggtgaagaaaataaagaagtagttggtgaaaatggtgaa 137

                                                                       
Query: 138 aatggtgaaaatattgttgaacaaccagaaattcaaacatntgaacttttanatgcaatt 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aatggtgaaaatattgttgaacaaccagaaattcaaacatntgaacttttanatgcaatt 197

                                             
Query: 198 tctaaagatcttggtgggttggagagcgaattat 231
           ||||||||||||||||||||||||||||||||||
Sbjct: 198 tctaaagatcttggtgggttggagagcgaattat 231


 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 864 ttaaatttgatttaggagttnataa 888
           |||||||||||||||||||||||||
Sbjct: 864 ttaaatttgatttaggagttnataa 888


 Score = 36.2 bits (18), Expect = 0.063
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 864 ttaaatttgatttaggagttnataa 888
           |||||| ||||||||||||| ||||
Sbjct: 292 ttaaatctgatttaggagttaataa 316


 Score = 36.2 bits (18), Expect = 0.063
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 292 ttaaatctgatttaggagttaataa 316
           |||||| ||||||||||||| ||||
Sbjct: 864 ttaaatttgatttaggagttnataa 888


>Contig-U13990-1 (Contig-U13990-1Q) /CSM_Contig/Contig-U13990-1Q.Seq.d
          Length = 431

 Score =  252 bits (127), Expect = 6e-67
 Identities = 201/237 (84%)
 Strand = Plus / Plus

                                                                       
Query: 290 gcttaaatctgatttaggagttaataatgttttcattccattgtatagtaaatgttttga 349
           |||||||| ||||||||||||||| |||| ||||||||| ||| | |||||| | |||||
Sbjct: 187 gcttaaatntgatttaggagttaanaatgntttcattccnttgnanagtaaangntttga 246

                                                                       
Query: 350 tttggctactaaagagtacacttacagtgtttgtccatatgaaaaagcatcacaaggtca 409
           ||||| ||||||| || || | ||||| ||||| |||||||||||||| || ||||||||
Sbjct: 247 tttggntactaaanaggacncntacagngtttgnccatatgaaaaagcntcccaaggtca 306

                                                                       
Query: 410 tactagtttaggtaaattcgaatcatttggtgataatggtaaaatgatgttatttgaaaa 469
            ||||| ||||||||||||||||| |||||||| || || |||| |||||||||| ||||
Sbjct: 307 nactagnttaggtaaattcgaatcntttggtganaanggnaaaangatgttatttnaaaa 366

                                                                    
Query: 470 tggtcaacaatgttggggtggtccaaaacgttcacttaaagtccttatggaatgtgg 526
           ||| | |||| | ||||| || || |||||||| ||||||| || || |||||||||
Sbjct: 367 tggncnacaangntggggnggnccnaaacgttcncttaaagnccntanggaatgtgg 423


 Score =  168 bits (85), Expect = 7e-42
 Identities = 113/124 (91%)
 Strand = Plus / Plus

                                                                       
Query: 106 aaaataaagaagtagttggtgaaaatggtgaaaatggtgaaaatattgttgaacaaccag 165
           |||||||| |||||||||||||||||||| |||||||| |||| |||||| |||||||| 
Sbjct: 3   aaaataaanaagtagttggtgaaaatggtnaaaatggtnaaaanattgttnaacaaccan 62

                                                                       
Query: 166 aaattcaaacatntgaacttttanatgcaatttctaaagatcttggtgggttggagagcg 225
           |||||| |||||||||||||||||||||||||| |||| || ||||||||||||| ||||
Sbjct: 63  aaattcnaacatntgaacttttanatgcaatttntaaanatnttggtgggttgganagcg 122

               
Query: 226 aatt 229
           ||||
Sbjct: 123 aatt 126


 Score = 34.2 bits (17), Expect = 0.25
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 864 ttaaatttgatttaggagtt 883
           |||||| |||||||||||||
Sbjct: 189 ttaaatntgatttaggagtt 208


>Contig-U05575-1 (Contig-U05575-1Q) /CSM_Contig/Contig-U05575-1Q.Seq.d
          Length = 551

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 81  attgatcaaccaaaagaaggtgaagaa 107
           |||| ||||| ||||||||||||||||
Sbjct: 338 attgttcaacaaaaagaaggtgaagaa 364


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8893
Number of Sequences: 6905
Number of extensions: 8893
Number of successful extensions: 1044
Number of sequences better than 10.0: 104
length of query: 894
length of database: 5,674,871
effective HSP length: 16
effective length of query: 878
effective length of database: 5,564,391
effective search space: 4885535298
effective search space used: 4885535298
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12119-1 (Contig-U12119-1Q) /CSM_Contig/Contig-U12119-1Q.Seq.d
         (894 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262964) Dictyostelium discoideum vegetative cDNA clone:VS...   708   0.0    3
(BJ434619) Dictyostelium discoideum cDNA clone:ddv24o09, 3' ...   650   0.0    3
(BJ397691) Dictyostelium discoideum cDNA clone:dds47a09, 5' ...   708   0.0    2
(AU263546) Dictyostelium discoideum vegetative cDNA clone:VS...   620   0.0    2
(BJ346448) Dictyostelium discoideum cDNA clone:dda30o22, 3' ...   240   1e-82  2
(AC174755) Bos taurus clone CH240-89M2, WORKING DRAFT SEQUEN...    48   0.57   1
(BB358700) Mus musculus adult male corpus striatum cDNA, RIK...    46   2.3    1
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    32   3.9    2
(AL357315) Human DNA sequence from clone RP11-809N15 on chro...    34   4.4    2
(ER399220) 1095349036780 Global-Ocean-Sampling_GS-34-01-01-1...    32   5.8    2
(EL955352) human_009705 human eyeball cDNA Library Homo sapi...    34   6.0    2
(AM451344) Vitis vinifera contig VV78X089997.2, whole genome...    36   6.9    2
(CT025893) Zebrafish DNA sequence from clone CH211-112C20 in...    44   9.0    1
(CR376723) Zebrafish DNA sequence from clone DKEY-90N12 in l...    44   9.0    1
(AC125647) Rattus norvegicus  BAC CH230-231J3 () complete se...    44   9.0    1
(AC188305) Pongo abelii chromosome UNK clone CH276-24H12, co...    44   9.0    1
(CS769155) Sequence 37151 from Patent WO2005083127.                44   9.0    1
(CS741963) Sequence 9959 from Patent WO2005083127.                 44   9.0    1
(AL353689) Human DNA sequence from clone RP5-1087E8 on chrom...    44   9.0    1
(AC018976) Homo sapiens chromosome 10 clone RP11-384N23, com...    44   9.0    1
(AC162083) Bos taurus clone CH240-110E19, WORKING DRAFT SEQU...    44   9.0    1
(AC151214) Bos taurus clone CH240-316L22, WORKING DRAFT SEQU...    44   9.0    1
(AC151098) Bos taurus clone CH240-38I22, WORKING DRAFT SEQUE...    44   9.0    1
(AC142553) Rattus norvegicus strain Brown Norway clone CH230...    44   9.0    1
(AC123273) Rattus norvegicus clone CH230-307O10, *** SEQUENC...    44   9.0    1
(AC112048) Rattus norvegicus clone CH230-27O21, *** SEQUENCI...    44   9.0    1
(AC107414) Rattus norvegicus clone CH230-28F13, WORKING DRAF...    44   9.0    1
(AC220182) Bos taurus clone CH240-365G22, WORKING DRAFT SEQU...    44   9.0    1
(AC195085) Macaca mulatta clone CH250-320L3, WORKING DRAFT S...    44   9.0    1
(AC173520) Bos taurus clone CH240-116K21, WORKING DRAFT SEQU...    44   9.0    1
(EJ213271) 1092351010690 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.0    1
(CZ288154) cp56f06.r Candida parapsilosis Random Genomic Lib...    44   9.0    1
(CO119146) GR__Eb021O10.r GR__Eb Gossypium raimondii cDNA cl...    44   9.0    1
(CO119131) GR__Eb021O02.r GR__Eb Gossypium raimondii cDNA cl...    44   9.0    1
(AI729155) BNLGHi12816 Six-day Cotton fiber Gossypium hirsut...    44   9.0    1
(AI726775) BNLGHi6524 Six-day Cotton fiber Gossypium hirsutu...    44   9.0    1
(BF255660) HVSMEf0007H08f Hordeum vulgare seedling root EST ...    44   9.0    1
(BB359665) Mus musculus adult male corpus striatum cDNA, RIK...    44   9.0    1
(BB357242) Mus musculus adult male corpus striatum cDNA, RIK...    44   9.0    1

>(AU262964) Dictyostelium discoideum vegetative cDNA clone:VSE239,
           3' end single read.
          Length = 565

 Score =  708 bits (357), Expect(3) = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Plus


Query: 298 ctgatttaggagttaataatgttttcattccattgtatagtaaatgttttgatttggcta 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ctgatttaggagttaataatgttttcattccattgtatagtaaatgttttgatttggcta 257


Query: 358 ctaaagagtacacttacagtgtttgtccatatgaaaaagcatcacaaggtcatactagtt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctaaagagtacacttacagtgtttgtccatatgaaaaagcatcacaaggtcatactagtt 317


Query: 418 taggtaaattcgaatcatttggtgataatggtaaaatgatgttatttgaaaatggtcaac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taggtaaattcgaatcatttggtgataatggtaaaatgatgttatttgaaaatggtcaac 377


Query: 478 aatgttggggtggtccaaaacgttcacttaaagtccttatggaatgtggtcaagataatg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatgttggggtggtccaaaacgttcacttaaagtccttatggaatgtggtcaagataatg 437


Query: 538 aattatatgatgtacaagaacctggtaaatgtgaatatactattaaatttaaaactccag 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aattatatgatgtacaagaacctggtaaatgtgaatatactattaaatttaaaactccag 497


Query: 598 ttttatgtagtgaagaacatttaaaaattttaagattagaaggtgatcattctttat 654
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttttatgtagtgaagaacatttaaaaattttaagattagaaggtgatcattctttat 554

 Score = 95.6 bits (48), Expect(3) = 0.0
 Identities = 52/54 (96%)
 Strand = Plus / Plus


Query: 151 ttgttgaacaaccagaaattcaaacatntgaacttttanatgcaatttctaaag 204
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1   ttgttgaacaaccagaaattcaaacatctgaacttttagatgcaatttctaaag 54

 Score = 63.9 bits (32), Expect(3) = 0.0
 Identities = 32/32 (100%)
 Strand = Plus / Plus


Query: 201 aaagatcttggtgggttggagagcgaattatc 232
           ||||||||||||||||||||||||||||||||
Sbjct: 101 aaagatcttggtgggttggagagcgaattatc 132

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 537,918,967
Number of extensions: 33920291
Number of successful extensions: 2656421
Number of sequences better than 10.0: 39
Length of query: 894
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 870
Effective length of database: 97,308,875,965
Effective search space: 84658722089550
Effective search space used: 84658722089550
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12119-1 (Contig-U12119-1Q) /CSM_Contig/Contig-U12119-1Q.Seq.d
         (894 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT054410_1(BT054410|pid:none) Zea mays full-length cDNA clone ZM...   118   2e-25
BT054926_1(BT054926|pid:none) Zea mays full-length cDNA clone ZM...   118   3e-25
AK102926_1(AK102926|pid:none) Oryza sativa Japonica Group cDNA c...   117   7e-25
AB009049_9(AB009049|pid:none) Arabidopsis thaliana genomic DNA, ...   107   4e-22
AY086076_1(AY086076|pid:none) Arabidopsis thaliana clone 21044 m...   107   4e-22
T24944(T24944;T27735) hypothetical protein ZK1307.8 - Caenorhabd...   105   2e-21
BC046883_1(BC046883|pid:none) Danio rerio protein kinase C subst...    94   6e-18
BC074301_1(BC074301|pid:none) Xenopus laevis MGC84105 protein, m...    92   2e-17
BC078024_1(BC078024|pid:none) Xenopus laevis protein kinase C su...    92   2e-17
BC064160_1(BC064160|pid:none) Xenopus tropicalis protein kinase ...    92   3e-17
(Q28034) RecName: Full=Glucosidase 2 subunit beta; AltName: Full...    91   7e-17
BC154890_1(BC154890|pid:none) Xenopus tropicalis protein kinase ...    89   2e-16
BC161987_1(BC161987|pid:none) Rattus norvegicus protein kinase C...    88   3e-16
BT044709_1(BT044709|pid:none) Salmo salar clone ssal-rgf-501-232...    88   3e-16
BC015154_1(BC015154|pid:none) Homo sapiens, clone IMAGE:3883364,...    87   6e-16
AY815558_1(AY815558|pid:none) Schistosoma japonicum SJCHGC01925 ...    87   6e-16
FN319183_1(FN319183|pid:none) Schistosoma japonicum isolate Anhu...    87   6e-16
FN314565_1(FN314565|pid:none) Schistosoma japonicum isolate Anhu...    87   6e-16
AB385574_1(AB385574|pid:none) Synthetic construct DNA, clone: pF...    87   6e-16
AK296187_1(AK296187|pid:none) Homo sapiens cDNA FLJ59211 complet...    87   6e-16
BC013586_1(BC013586|pid:none) Homo sapiens protein kinase C subs...    87   6e-16
AK159705_1(AK159705|pid:none) Mus musculus osteoclast-like cell ...    86   1e-15
BC009816_1(BC009816|pid:none) Mus musculus protein kinase C subs...    86   1e-15
(O08795) RecName: Full=Glucosidase 2 subunit beta; AltName: Full...    86   1e-15
CP000500_403(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    80   1e-13
AC159437_13(AC159437|pid:none) Trypanosoma brucei chromosome 7 c...    80   1e-13
AE014134_2952(AE014134|pid:none) Drosophila melanogaster chromos...    77   1e-12
AM502244_97(AM502244|pid:none) Leishmania infantum chromosome 26.      72   2e-11
AY048226_1(AY048226|pid:none) Arabidopsis thaliana AT5g56360/MCD...    72   3e-11
AM920436_465(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    72   3e-11
AM270297_2(AM270297|pid:none) Aspergillus niger contig An13c0030...    71   6e-11
CR382137_737(CR382137|pid:none) Debaryomyces hansenii strain CBS...    70   1e-10
AP007151_80(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ...    70   1e-10
CP001142_190(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    69   2e-10
CU633456_4(CU633456|pid:none) Podospora anserina genomic DNA chr...    69   2e-10
CR382131_1097(CR382131|pid:none) Yarrowia lipolytica strain CLIB...    63   2e-08
AM494963_101(AM494963|pid:none) Leishmania braziliensis chromoso...    63   2e-08
FM992695_70(FM992695|pid:none) Candida dubliniensis CD36 chromos...    62   3e-08
BC080029_1(BC080029|pid:none) Xenopus laevis hypothetical protei...    61   4e-08
BC088539_1(BC088539|pid:none) Xenopus tropicalis N-acetylglucosa...    61   4e-08
FN392321_175(FN392321|pid:none) Pichia pastoris GS115 chromosome...    59   2e-07
BT078858_1(BT078858|pid:none) Esox lucius clone eluc-evq-502-382...    59   3e-07
DQ417124_1(DQ417124|pid:none) Ictalurus punctatus clone SBBA06 p...    58   4e-07
BC098716_1(BC098716|pid:none) Rattus norvegicus N-acetylglucosam...    58   5e-07
BC158818_1(BC158818|pid:none) Rattus norvegicus N-acetylglucosam...    58   5e-07
(Q6S5C2) RecName: Full=N-acetylglucosamine-1-phosphotransferase ...    57   6e-07
(Q58CS8) RecName: Full=N-acetylglucosamine-1-phosphotransferase ...    57   6e-07
BT073746_1(BT073746|pid:none) Oncorhynchus mykiss clone omyk-evo...    57   1e-06
BT050284_1(BT050284|pid:none) Salmo salar clone ssal-eve-521-166...    57   1e-06
BC071333_1(BC071333|pid:none) Danio rerio N-acetylglucosamine-1-...    56   1e-06
BC131525_1(BC131525|pid:none) Homo sapiens N-acetylglucosamine-1...    55   2e-06
(Q9UJJ9) RecName: Full=N-acetylglucosamine-1-phosphotransferase ...    55   2e-06
CU928169_419(CU928169|pid:none) Kluyveromyces thermotolerans str...    55   4e-06
AE006467_3(AE006467|pid:none) Homo sapiens 16p13.3 sequence sect...    55   4e-06
DQ214286_1(DQ214286|pid:none) Taeniopygia guttata clone 0058P005...    55   4e-06
FN357321_38(FN357321|pid:none) Schistosoma mansoni genome sequen...    54   5e-06
AE016820_547(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    54   7e-06
DQ214287_1(DQ214287|pid:none) Taeniopygia guttata clone 0063P003...    54   9e-06
DQ214285_1(DQ214285|pid:none) Taeniopygia guttata clone 0058P004...    54   9e-06
AK078230_1(AK078230|pid:none) Mus musculus adult male olfactory ...    53   1e-05
CR382126_568(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    50   1e-04
CR380951_196(CR380951|pid:none) Candida glabrata strain CBS138 c...    45   0.003
CP000592_300(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...    43   0.016
AF339157_1(AF339157|pid:none) Myotis lucifugus mannose-6-phospha...    39   0.23
CR954212_294(CR954212|pid:none) Ostreococcus tauri strain OTTH05...    38   0.40
BC171973_1(BC171973|pid:none) Mus musculus insulin-like growth f...    35   2.6
(Q07113) RecName: Full=Cation-independent mannose-6-phosphate re...    35   2.6
U59809_1(U59809|pid:none) Rattus norvegicus mannose 6-phosphate/...    35   2.6
AF117707_1(AF117707|pid:none) Lycopersicon esculentum putative c...    33   9.9
AY941668_1(AY941668|pid:none) Lycopersicon peruvianum putative c...    33   9.9
AY941679_1(AY941679|pid:none) Lycopersicon chilense putative cop...    33   9.9
AY941674_1(AY941674|pid:none) Lycopersicon chilense putative cop...    33   9.9
AY941686_1(AY941686|pid:none) Solanum habrochaites putative copp...    33   9.9
AY941669_1(AY941669|pid:none) Lycopersicon peruvianum putative c...    33   9.9

>BT054410_1(BT054410|pid:none) Zea mays full-length cDNA clone
           ZM_BFc0041A24 mRNA, complete cds.
          Length = 602

 Score =  118 bits (296), Expect = 2e-25
 Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
 Frame = +3

Query: 291 LKSDLGVNNVFIPLYSKCFDLATKEYTYSVCPYEKASQ--GH--TSLGKFESFGDNGKMM 458
           LK D G +  F   Y +CF+    +YTY VC Y+KASQ  GH  T+LG+++ F D+ ++M
Sbjct: 469 LKHDFGNDKEFYSFYDQCFETKEGKYTYKVCAYKKASQAEGHSSTNLGRWDKFEDSYRVM 528

Query: 459 LFENGQQCWGGPKRSLKVLMECGQDNELYDVQEPGKCEYTIKFKTPVLCSEEHLKILR 632
            F +G +CW GP RSLKV + CG  NEL DV EP +CEY     TP +C EE LK L+
Sbjct: 529 HFSSGDKCWNGPDRSLKVRLRCGLSNELNDVDEPSRCEYVAVLSTPAVCVEEKLKELQ 586

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 806,096,169
Number of extensions: 16571551
Number of successful extensions: 26545
Number of sequences better than 10.0: 74
Number of HSP's gapped: 26493
Number of HSP's successfully gapped: 74
Length of query: 298
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 170
Effective length of database: 636,901,312
Effective search space: 108273223040
Effective search space used: 108273223040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.66  gvh: 0.25  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U12119-1 is nuc
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0