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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12110-1
Contig ID Contig-U12110-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Contig-U12110-1Q.Seq.d
ATGAAAAAAATGATGATGAAAAAAATGATGATGATGATGNGGGGGGTTTT
TCAAAANAANAATTTTTAANNCAANGTAAAANTTTANCTTTNCCAAANCA
AAANNCAAANAAAANNCCCCCNCCCCCAAANATNGNNNNNNNNN------
----AAGTATTTGTACATTTAAATCGTCAACAAGAAGCAAGTCAATATCT
TCGTTATGCATTACGTAATATCCATTTTGAAAATGGTTTATTCTCTCATC
AATTAAAATTCCTTACTGTGGCAGTTGCTTTCAATGATAAAAATTATTAT
TTAGCTTATAAACATGTTAAATATGTTTGTTCAAAGAAACCATATAGTAA
TAGAGTTTGGAATCTTTTTAATAAAATCATTGTAAATTATGGTAATAGAT
CAACAGTACAAAATAGATTTTTAACAAAAATTAATGAAAAATATTCAGAT
AGTATACCAGTTTTAATTATGTTGGGAAATCAAAATAAACAAACTGATAA
TGCAAGAGGTGCATTGTTTGAATATATTAAAGCCTATAGATTATGTCCAG
ATGATCCTTTGATTAATTTATTGATTTCAGTTTTAATTCTCTCACAAGTT
ATGGGTAGAAAACAAGCAAATAGACATCGTATAGCAATTACATCATACTC
ATTCTTATATAAATATTATAATCTTAGAGGTAAATCTCAAGAATCTTTAT
ATAATCTTGGTAGAGGTTATCATCAATTAGGTATATACAATATGGCAATT
AATTATTATGATATGGTTTTAAATTATGAAGATGAAATCGATGAAGAAAC
TGGTGAAATCAATAAAAATGATTCTTTGAAATGTGAAGCAGCTTTTAATC
TTTCTTTAATCTATAAATCAAAAGGTAATACTAGTCTTGCTAATGAAATC
TTAAAAAAATATATTGTTGTGTAAATAATTTCAAAAAATAAATAAACAAA
AAATAAATAATNAATAAATAAATAA
Gap gap included
Contig length 965
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 681549
End point 682505
Strand (PLUS/MINUS) PLUS
Number of clones 18
Number of EST 19
Link to clone list U12110
List of clone(s) 

est1=SHK488F,1,135
est2=AHD835Z,136,845
est3=AHL559Z,158,829
est4=SHA146Z,158,844
est5=SHJ626Z,163,829
est6=CHM173Z,165,842
est7=AHB585Z,167,843
est8=AHO281Z,214,844
est9=SHK488Z,222,843
est10=SHL765Z,222,844
est11=AHC741Z,225,882
est12=AHF721Z,225,831
est13=VHI696Z,226,884
est14=SHF414Z,247,837
est15=AHQ827Z,291,829
est16=AHA307Z,333,875
est17=SHK481Z,342,590
est18=AHJ351Z,355,958
est19=AHG405Z,475,830
Translated Amino Acid sequence 
EKNDDEKNDDDDXGGFSKXXFLXQXKXLXXPXQXXXKXPPPPXXXXX---

---VFVHLNRQQEASQYLRYALRNIHFENGLFSHQLKFLTVAVAFNDKNYYLAYKHVKYV
CSKKPYSNRVWNLFNKIIVNYGNRSTVQNRFLTKINEKYSDSIPVLIMLGNQNKQTDNAR
GALFEYIKAYRLCPDDPLINLLISVLILSQVMGRKQANRHRIAITSYSFLYKYYNLRGKS
QESLYNLGRGYHQLGIYNMAINYYDMVLNYEDEIDEETGEINKNDSLKCEAAFNLSLIYK
SKGNTSLANEILKKYIVV*iisknk*tknk*xink*
Translated Amino Acid sequence (All Frames) 
Frame A:
mkkmmmkkmmmmmxgvfqxxnf*xxvkxxlxqxkxqxkxpxpqxxxxx---

---kylyi*ivnkkqvnifvmhyvisilkmvyslin*nsllwqllsmikiii*linmlnm
fvqrnhiviefgifliksl*imvidqqykidf*qklmkniqivyqf*lcweikinklimq
evhclnilkpidyvqmil*liy*fqf*fshklwvenkqidiv*qlhhthsyiniiilevn
lknlyiilveviin*vytiwqliimiwf*imkmksmkklvksikmil*nvkqllifl*si
nqkvilvllmks*knillck*fqkinkqkinnx*in

Frame B:
*kk***kk****xggffkxxifxxx*xfxfxkxkxkxxxpxpkxxxx---

---sictfksstrsksisslcit*ypf*kwfilssikipycgscfq**kllfsl*tc*ic
lfketi***slesf**nhcklw**instk*ifnkn**kifr*ytsfnyvgksk*tn**ck
rciv*iy*sl*imsr*sfd*fidfsfnsltsyg*ktsk*tsysnyiilili*il*s*r*i
srifi*sw*rlssiryiqygn*ll*ygfkl*r*nr*rnw*nq*k*ffem*ssf*sffnl*
ikr*y*sc**nlkkiyccvnnfkk*inkk*ixnk*i

Frame C:
EKNDDEKNDDDDXGGFSKXXFLXQXKXLXXPXQXXXKXPPPPXXXXX---

---VFVHLNRQQEASQYLRYALRNIHFENGLFSHQLKFLTVAVAFNDKNYYLAYKHVKYV
CSKKPYSNRVWNLFNKIIVNYGNRSTVQNRFLTKINEKYSDSIPVLIMLGNQNKQTDNAR
GALFEYIKAYRLCPDDPLINLLISVLILSQVMGRKQANRHRIAITSYSFLYKYYNLRGKS
QESLYNLGRGYHQLGIYNMAINYYDMVLNYEDEIDEETGEINKNDSLKCEAAFNLSLIYK
SKGNTSLANEILKKYIVV*iisknk*tknk*xink*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12110-1 (Contig-U12110-1Q)
/CSM_Contig/Contig-U12110-1Q.Seq.d
         (975 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Conti...  1479  0.0
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U04774-1 (Contig-U04774-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U13432-1 (Contig-U13432-1Q) /CSM_Contig/Conti...    36  0.069
Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Conti...    36  0.069
Contig-U11084-1 (Contig-U11084-1Q) /CSM_Contig/Conti...    36  0.069
Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Conti...    36  0.069
Contig-U02829-1 (Contig-U02829-1Q) /CSM_Contig/Conti...    36  0.069
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    36  0.069
Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Conti...    34  0.27

>Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Contig-U12110-1Q.Seq.d
          Length = 975

 Score = 1479 bits (746), Expect = 0.0
 Identities = 746/746 (100%)
 Strand = Plus / Plus

                                                                       
Query: 155 aagtatttgtacatttaaatcgtcaacaagaagcaagtcaatatcttcgttatgcattac 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 aagtatttgtacatttaaatcgtcaacaagaagcaagtcaatatcttcgttatgcattac 214

                                                                       
Query: 215 gtaatatccattttgaaaatggtttattctctcatcaattaaaattccttactgtggcag 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtaatatccattttgaaaatggtttattctctcatcaattaaaattccttactgtggcag 274

                                                                       
Query: 275 ttgctttcaatgataaaaattattatttagcttataaacatgttaaatatgtttgttcaa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttgctttcaatgataaaaattattatttagcttataaacatgttaaatatgtttgttcaa 334

                                                                       
Query: 335 agaaaccatatagtaatagagtttggaatctttttaataaaatcattgtaaattatggta 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agaaaccatatagtaatagagtttggaatctttttaataaaatcattgtaaattatggta 394

                                                                       
Query: 395 atagatcaacagtacaaaatagatttttaacaaaaattaatgaaaaatattcagatagta 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atagatcaacagtacaaaatagatttttaacaaaaattaatgaaaaatattcagatagta 454

                                                                       
Query: 455 taccagttttaattatgttgggaaatcaaaataaacaaactgataatgcaagaggtgcat 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taccagttttaattatgttgggaaatcaaaataaacaaactgataatgcaagaggtgcat 514

                                                                       
Query: 515 tgtttgaatatattaaagcctatagattatgtccagatgatcctttgattaatttattga 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tgtttgaatatattaaagcctatagattatgtccagatgatcctttgattaatttattga 574

                                                                       
Query: 575 tttcagttttaattctctcacaagttatgggtagaaaacaagcaaatagacatcgtatag 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttcagttttaattctctcacaagttatgggtagaaaacaagcaaatagacatcgtatag 634

                                                                       
Query: 635 caattacatcatactcattcttatataaatattataatcttagaggtaaatctcaagaat 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caattacatcatactcattcttatataaatattataatcttagaggtaaatctcaagaat 694

                                                                       
Query: 695 ctttatataatcttggtagaggttatcatcaattaggtatatacaatatggcaattaatt 754
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctttatataatcttggtagaggttatcatcaattaggtatatacaatatggcaattaatt 754

                                                                       
Query: 755 attatgatatggttttaaattatgaagatgaaatcgatgaagaaactggtgaaatcaata 814
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 attatgatatggttttaaattatgaagatgaaatcgatgaagaaactggtgaaatcaata 814

                                                                       
Query: 815 aaaatgattctttgaaatgtgaagcagcttttaatctttctttaatctataaatcaaaag 874
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aaaatgattctttgaaatgtgaagcagcttttaatctttctttaatctataaatcaaaag 874

                                     
Query: 875 gtaatactagtcttgctaatgaaatc 900
           ||||||||||||||||||||||||||
Sbjct: 875 gtaatactagtcttgctaatgaaatc 900


 Score = 89.7 bits (45), Expect = 5e-18
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 41  ggggggtttttcaaaanaanaatttttaanncaangtaaaantttanctttnccaaanca 100
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ggggggtttttcaaaanaanaatttttaanncaangtaaaantttanctttnccaaanca 100

                                         
Query: 101 aaanncaaanaaaanncccccncccccaaa 130
           ||||||||||||||||||||||||||||||
Sbjct: 101 aaanncaaanaaaanncccccncccccaaa 130


>Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Contig-U12528-1Q.Seq.d
          Length = 1995

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 790 gatgaagaaactggtgaaa 808
           |||||||||||||||||||
Sbjct: 665 gatgaagaaactggtgaaa 683


>Contig-U04774-1 (Contig-U04774-1Q) /CSM_Contig/Contig-U04774-1Q.Seq.d
          Length = 1119

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 332 caaagaaaccatatagtaa 350
           |||||||||||||||||||
Sbjct: 837 caaagaaaccatatagtaa 855


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,857
Number of Sequences: 6905
Number of extensions: 15857
Number of successful extensions: 1654
Number of sequences better than 10.0: 182
length of query: 975
length of database: 5,674,871
effective HSP length: 16
effective length of query: 959
effective length of database: 5,564,391
effective search space: 5336250969
effective search space used: 5336250969
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Contig-U12110-1Q.Seq.d
         (975 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ349989) Dictyostelium discoideum cDNA clone:dda38f10, 3' ...  1405   0.0    1
(BJ383054) Dictyostelium discoideum cDNA clone:ddc46a19, 3' ...  1344   0.0    1
(BJ348939) Dictyostelium discoideum cDNA clone:dda34i21, 3' ...  1332   0.0    1
(BJ403206) Dictyostelium discoideum cDNA clone:dds24k11, 3' ...  1326   0.0    1
(BJ407665) Dictyostelium discoideum cDNA clone:dds43c08, 3' ...  1322   0.0    1
(BJ349361) Dictyostelium discoideum cDNA clone:dda36b11, 3' ...  1294   0.0    1
(BJ442140) Dictyostelium discoideum cDNA clone:ddv48o24, 3' ...  1283   0.0    1
(BJ354721) Dictyostelium discoideum cDNA clone:dda54e15, 3' ...  1255   0.0    2
(BJ356248) Dictyostelium discoideum cDNA clone:dda59a22, 3' ...  1251   0.0    1
(BJ408948) Dictyostelium discoideum cDNA clone:dds47b17, 3' ...  1235   0.0    1
(BJ408180) Dictyostelium discoideum cDNA clone:dds44p22, 3' ...  1233   0.0    1
(BJ351126) Dictyostelium discoideum cDNA clone:dda42j05, 3' ...  1195   0.0    1
(BJ406102) Dictyostelium discoideum cDNA clone:dds34l04, 3' ...  1172   0.0    1
(BJ357665) Dictyostelium discoideum cDNA clone:dda64f08, 3' ...  1068   0.0    1
(BJ353271) Dictyostelium discoideum cDNA clone:dda49f13, 3' ...  1037   0.0    1
(BJ347786) Dictyostelium discoideum cDNA clone:dda31n01, 3' ...  1021   0.0    1
(BJ358210) Dictyostelium discoideum cDNA clone:dda43j02, 3' ...   680   0.0    1
(BJ408116) Dictyostelium discoideum cDNA clone:dds44b22, 3' ...   470   e-128  1
(BJ397079) Dictyostelium discoideum cDNA clone:dds44p22, 5' ...    78   7e-10  1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.007  10
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.014  16
(AR512578) Sequence 17538 from patent US 6703491.                  40   0.059  2
(AR497296) Sequence 2256 from patent US 6703491.                   40   0.059  2
(AY122172) Drosophila melanogaster LD29479 full insert cDNA.       40   0.12   2
(AC155168) Mus musculus BAC clone RP23-208M17 from chromosom...    42   0.14   3
(BV383312) S244P6224FC12.T0 AlaskaGrayWolf Canis lupus STS g...    50   0.16   1
(AC232134) Oryza minuta clone OM__Ba0190G07, complete sequence.    50   0.16   1
(AC225235) Oryza officinalis clone OO__Ba0021O07, *** SEQUEN...    50   0.16   1
(AE017226) Treponema denticola ATCC 35405, complete genome.        50   0.16   1
(AC025313) Homo sapiens clone RP11-152E15, WORKING DRAFT SEQ...    48   0.20   4
(CU459035) Medicago truncatula chromosome 5 clone mth2-57p20...    38   0.21   7
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   0.36   14
(CQ596486) Sequence 24244 from Patent WO0171042.                   40   0.44   2
(CQ596483) Sequence 24241 from Patent WO0171042.                   40   0.44   2
(CQ575963) Sequence 3721 from Patent WO0171042.                    40   0.44   2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.47   14
(AL390247) Human DNA sequence from clone RP11-778A10 on chro...    38   0.57   6
(AC027206) Homo sapiens chromosome 4 clone RP11-134C22 map 4...    38   0.58   6
(AC116325) Mus musculus BAC clone RP23-295K3 from 10, comple...    42   0.61   3
(AL807252) Mouse DNA sequence from clone RP23-456B18 on chro...    48   0.63   1
(AC108718) Homo sapiens 3 BAC RP11-246A10 (Roswell Park Canc...    48   0.63   1
(AC068646) Homo sapiens 3 BAC RP11-553C21 (Roswell Park Canc...    48   0.63   1
(AC130429) Homo sapiens chromosome 3 clone RP11-152E15, *** ...    48   0.63   1
(AC125934) Rattus norvegicus clone CH230-223K2, *** SEQUENCI...    48   0.63   1
(AC084435) Homo sapiens chromosome 3 clone RP11-91G3 map 3, ...    48   0.63   1
(AC022365) Homo sapiens chromosome 3 clone RP11-689I7, WORKI...    48   0.63   1
(AC009809) Homo sapiens chromosome 3 clone RP11-246A10 map 3...    48   0.63   1
(AQ491274) RPCI-11-246A10.TJ RPCI-11 Homo sapiens genomic cl...    48   0.63   1
(AQ384979) RPCI11-138L6.TJ RPCI-11 Homo sapiens genomic clon...    48   0.63   1
(DV613953) EST1216949 Glossina morsitans morsitans Fat body ...    48   0.63   1
(DV608779) EST1211775 Glossina morsitans morsitans Fat body ...    48   0.63   1
(AM512040) Paracentrotus lividus EST, clone MPMGp1171D2355Q,...    48   0.63   1
(BX549929) Glossina morsitans morsitans (Tseatse fly) EST fr...    48   0.63   1
(FE954145) Aaem01787 Antheraea assama 96 hours embryo cDNA l...    48   0.63   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    44   0.63   9
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    40   0.64   17
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    32   0.66   10
(AM477984) Vitis vinifera contig VV78X100436.13, whole genom...    40   0.66   3
(AC014564) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    40   0.70   2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.72   17
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    42   0.82   17
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    40   0.86   17
(AX392733) Sequence 23 from Patent WO0212526.                      40   1.0    7
(AR707080) Sequence 23 from patent US 6933145.                     40   1.0    7
(CP000727) Clostridium botulinum A str. Hall, complete genome.     40   1.1    17
(AL592442) Human DNA sequence *** SEQUENCING CANCELLED *** f...    38   1.1    6
(AC189387) Brassica rapa subsp. pekinensis clone KBrB052N08,...    42   1.3    5
(AC021918) Homo sapiens chromosome 18 clone RP11-138C24 map ...    34   1.3    2
(AP005208) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    34   1.3    2
(AC009309) Homo sapiens BAC clone RP11-301O19 from 2, comple...    32   1.3    2
(AP005403) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    34   1.3    2
(AC027515) Homo sapiens chromosome 18 clone RP11-183C12 map ...    34   1.3    2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    40   1.5    17
(CQ413547) Sequence 20618 from Patent WO0170979.                   32   1.6    2
(AX576072) Sequence 12 from Patent WO0162918.                      32   1.7    2
(DA589379) Homo sapiens cDNA clone HLUNG2011028, 5' end, mRN...    32   1.7    2
(DA379530) Homo sapiens cDNA clone BRTHA2012380, 5' end, mRN...    32   1.7    2
(BE160109) QV1-HT0412-020400-136-f10 HT0412 Homo sapiens cDN...    32   1.7    2
(CQ408557) Sequence 15628 from Patent WO0170979.                   32   1.8    2
(AV654821) Homo sapiens cDNA clone:GLCDZH03, 3'end, expresse...    32   1.8    2
(CQ402173) Sequence 9244 from Patent WO0170979.                    32   1.8    2
(CQ395844) Sequence 2915 from Patent WO0170979.                    32   1.8    2
(DY253344) PMAH-aaa24b06.b1 Lamprey_EST_Olfactory Petromyzon...    36   1.8    2
(DX555317) GH_MBb0049P17r GH_MBb Gossypium hirsutum genomic ...    40   2.2    3
(AL163533) Human DNA sequence from clone RP11-114G1 on chrom...    38   2.3    4
(EK291689) 1095462332534 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.3    2
(AC179422) Strongylocentrotus purpuratus clone R3-62K1, WORK...    44   2.3    7
(AC115968) Mus musculus chromosome 1, clone RP24-72P6, compl...    46   2.5    1
(AC098711) Mus musculus BAC clone RP23-1M11 from 13, complet...    46   2.5    1
(DQ415921) Cleome spinosa clone BAC Cs2, complete sequence.        46   2.5    1
(GC493614) Sequence 4 from patent US 7393922.                      46   2.5    1
(AC114813) Homo sapiens BAC clone RP11-1325I10 from 2, compl...    46   2.5    1
(AC148773) Mus musculus chromosome 10 clone RP24-317H9 map 1...    46   2.5    1
(AC118580) Oryctolagus cuniculus clone LB1-82E16, WORKING DR...    46   2.5    1
(AC114610) Mus musculus clone RP23-469O2, WORKING DRAFT SEQU...    46   2.5    1
(AC112323) Rattus norvegicus clone CH230-172G11, *** SEQUENC...    46   2.5    1
(AC112117) Rattus norvegicus clone CH230-163M8, *** SEQUENCI...    46   2.5    1
(AC111879) Rattus norvegicus clone CH230-25H21, WORKING DRAF...    46   2.5    1
(AC110930) Rattus norvegicus clone CH230-215F2, *** SEQUENCI...    46   2.5    1
(AC106062) Rattus norvegicus clone CH230-142J2, WORKING DRAF...    46   2.5    1

>(BJ349989) Dictyostelium discoideum cDNA clone:dda38f10, 3' end,
           single read.
          Length = 709

 Score = 1405 bits (709), Expect = 0.0
 Identities = 709/709 (100%)
 Strand = Plus / Minus


Query: 155 aagtatttgtacatttaaatcgtcaacaagaagcaagtcaatatcttcgttatgcattac 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aagtatttgtacatttaaatcgtcaacaagaagcaagtcaatatcttcgttatgcattac 650


Query: 215 gtaatatccattttgaaaatggtttattctctcatcaattaaaattccttactgtggcag 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtaatatccattttgaaaatggtttattctctcatcaattaaaattccttactgtggcag 590


Query: 275 ttgctttcaatgataaaaattattatttagcttataaacatgttaaatatgtttgttcaa 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttgctttcaatgataaaaattattatttagcttataaacatgttaaatatgtttgttcaa 530


Query: 335 agaaaccatatagtaatagagtttggaatctttttaataaaatcattgtaaattatggta 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agaaaccatatagtaatagagtttggaatctttttaataaaatcattgtaaattatggta 470


Query: 395 atagatcaacagtacaaaatagatttttaacaaaaattaatgaaaaatattcagatagta 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atagatcaacagtacaaaatagatttttaacaaaaattaatgaaaaatattcagatagta 410


Query: 455 taccagttttaattatgttgggaaatcaaaataaacaaactgataatgcaagaggtgcat 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taccagttttaattatgttgggaaatcaaaataaacaaactgataatgcaagaggtgcat 350


Query: 515 tgtttgaatatattaaagcctatagattatgtccagatgatcctttgattaatttattga 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgtttgaatatattaaagcctatagattatgtccagatgatcctttgattaatttattga 290


Query: 575 tttcagttttaattctctcacaagttatgggtagaaaacaagcaaatagacatcgtatag 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttcagttttaattctctcacaagttatgggtagaaaacaagcaaatagacatcgtatag 230


Query: 635 caattacatcatactcattcttatataaatattataatcttagaggtaaatctcaagaat 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 caattacatcatactcattcttatataaatattataatcttagaggtaaatctcaagaat 170


Query: 695 ctttatataatcttggtagaggttatcatcaattaggtatatacaatatggcaattaatt 754
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctttatataatcttggtagaggttatcatcaattaggtatatacaatatggcaattaatt 110


Query: 755 attatgatatggttttaaattatgaagatgaaatcgatgaagaaactggtgaaatcaata 814
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 attatgatatggttttaaattatgaagatgaaatcgatgaagaaactggtgaaatcaata 50


Query: 815 aaaatgattctttgaaatgtgaagcagcttttaatctttctttaatcta 863
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  aaaatgattctttgaaatgtgaagcagcttttaatctttctttaatcta 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,100,069,867
Number of extensions: 72578537
Number of successful extensions: 6488987
Number of sequences better than 10.0: 256
Length of query: 975
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 951
Effective length of database: 97,308,875,965
Effective search space: 92540741042715
Effective search space used: 92540741042715
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Contig-U12110-1Q.Seq.d
         (975 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ719639_1(AJ719639|pid:none) Gallus gallus mRNA for hypothetica...   126   1e-27
AL137453_1(AL137453|pid:none) Homo sapiens mRNA; cDNA DKFZp761E1...   124   5e-27
AK027050_1(AK027050|pid:none) Homo sapiens cDNA: FLJ23397 fis, c...   124   5e-27
BC043347_1(BC043347|pid:none) Homo sapiens general transcription...   124   5e-27
BC015995_1(BC015995|pid:none) Homo sapiens, Similar to general t...   124   5e-27
CR860319_1(CR860319|pid:none) Pongo abelii mRNA; cDNA DKFZp459C1...   123   1e-26
AC140034_14(AC140034|pid:none) Medicago truncatula clone mth2-17...   116   1e-24
AP008217_676(AP008217|pid:none) Oryza sativa (japonica cultivar-...   113   1e-23
AC138002_12(AC138002|pid:none) Oryza sativa (japonica cultivar-g...   113   1e-23
BT002323_1(BT002323|pid:none) Arabidopsis thaliana clone C105094...   111   4e-23
FM992690_267(FM992690|pid:none) Candida dubliniensis CD36 chromo...    78   5e-13
Z70783_10(Z70783|pid:none) Caenorhabditis elegans Cosmid ZK856, ...    77   9e-13
CR380947_149(CR380947|pid:none) Candida glabrata strain CBS138 c...    72   3e-11
AF229182_1(AF229182|pid:none) Kluyveromyces lactis transcription...    69   2e-10
AE013599_2555(AE013599|pid:none) Drosophila melanogaster chromos...    69   2e-10
CP000883_115(CP000883|pid:none) Hemiselmis andersenii chromosome...    69   3e-10
DQ115391_8(DQ115391|pid:none) Saccharomyces cerevisiae Ygr039wp ...    68   5e-10
AE016819_897(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    67   9e-10
CR382128_14(CR382128|pid:none) Yarrowia lipolytica strain CLIB12...    64   6e-09
FN392319_684(FN392319|pid:none) Pichia pastoris GS115 chromosome...    63   2e-08
CR954204_365(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    61   7e-08
CP000584_335(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    59   3e-07
AM920431_997(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    52   3e-05
FN357307_8(FN357307|pid:none) Schistosoma mansoni genome sequenc...    52   4e-05
CP001330_227(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    49   3e-04
AP007155_726(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    47   0.001
AM269960_1(AM269960|pid:none) Aspergillus niger contig An01c0130...    46   0.002
AC137988_20(AC137988|pid:none) Trypanosoma cruzi strain Brener c...    45   0.005
CP001038_92(CP001038|pid:none) Nostoc punctiforme PCC 73102 plas...    40   0.16
FN357313_50(FN357313|pid:none) Schistosoma mansoni genome sequen...    39   0.21
AL929603_374(AL929603|pid:none) Trypanosoma brucei chromosome 1,...    39   0.27
CP000393_2457(CP000393|pid:none) Trichodesmium erythraeum IMS101...    38   0.60
CP001038_91(CP001038|pid:none) Nostoc punctiforme PCC 73102 plas...    37   0.79
CP000849_777(CP000849|pid:none) Rickettsia bellii OSU 85-389, co...    37   0.79
CP001357_1899(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    37   1.3
CP001037_5817(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    36   1.8
AE010299_2184(AE010299|pid:none) Methanosarcina acetivorans str....    36   1.8
AM910993_391(AM910993|pid:none) Plasmodium knowlesi strain H chr...    36   2.3
AP009552_4663(AP009552|pid:none) Microcystis aeruginosa NIES-843...    36   2.3
FN358756_3(FN358756|pid:none) Schistosoma mansoni genome sequenc...    36   2.3
BX548174_162(BX548174|pid:none) Prochlorococcus marinus MED4 com...    35   3.0
CP001291_846(CP001291|pid:none) Cyanothece sp. PCC 7424, complet...    35   5.1
CP000851_3180(CP000851|pid:none) Shewanella pealeana ATCC 700345...    35   5.1
(O82422) RecName: Full=Probable UDP-N-acetylglucosamine--peptide...    35   5.1
(Q6YZI0) RecName: Full=Probable UDP-N-acetylglucosamine--peptide...    35   5.1
CU466930_787(CU466930|pid:none) Candidatus Cloacamonas acidamino...    35   5.1
(O82039) RecName: Full=Probable UDP-N-acetylglucosamine--peptide...    34   6.7
CT030148_58(CT030148|pid:none) Kuenenia stuttgartiensis genome f...    34   6.7
CP001130_1277(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c...    34   6.7
AM486621_1(AM486621|pid:none) Vitis vinifera contig VV78X034347....    34   6.7
CP000393_3824(CP000393|pid:none) Trichodesmium erythraeum IMS101...    34   8.7
CP000117_892(CP000117|pid:none) Anabaena variabilis ATCC 29413, ...    34   8.7
CP001037_1682(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    34   8.7
BA000028_2013(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    34   8.7

>AJ719639_1(AJ719639|pid:none) Gallus gallus mRNA for hypothetical
            protein, clone 4n14.
          Length = 910

 Score =  126 bits (317), Expect = 1e-27
 Identities = 74/244 (30%), Positives = 134/244 (54%), Gaps = 1/244 (0%)
 Frame = +1

Query: 169  LNRQQEASQYLRYALRNIHF-ENGLFSHQLKFLTVAVAFNDKNYYLAYKHVKYVCSKKPY 345
            L+R +EA   +  +L    F ++     +L++  ++ A  DKN+  AY +++ +  +
Sbjct: 663  LSRYKEAELLVDSSLEYYSFYDDRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVN 722

Query: 346  SNRVWNLFNKIIVNYGNRSTVQNRFLTKINEKYSDSIPVLIMLGNQNKQTDNARGALFEY 525
              ++WN+FN++ +   ++    +RF  ++  K  D+  + ++ G+    + + + AL +Y
Sbjct: 723  KPQLWNIFNQVTMQ--SQDVRHHRFCLRLMLKNPDNHALCVLNGHNAFVSGSFKHALGQY 780

Query: 526  IKAYRLCPDDPXXXXXXXXXXXXQVMGRKQANRHRIAITSYSFLYKYYNLRGKSQESLYN 705
            ++A+R  PD+P                +    RH + +  +SFL++Y +LRG  QE+ YN
Sbjct: 781  VQAFRANPDEPLYSLCIGLTFIHMASQKYVLKRHALLVQGFSFLHRYLDLRGPCQETFYN 840

Query: 706  LGRGYHQLGIYNMAINYYDMVLNYEDEIDEETGEINKNDSLKCEAAFNLSLIYKSKGNTS 885
            LGRG HQLG+ ++AI+YY  VL     +  E  E ++ D L+ + AFNLSLIY S GNT
Sbjct: 841  LGRGLHQLGLLHLAIHYYQKVLEL-PPLTLEGIETDQTD-LRRDTAFNLSLIYHSSGNTR 898

Query: 886  LANE 897
            +A +
Sbjct: 899  MAQK 902

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,132,082,400
Number of extensions: 22533300
Number of successful extensions: 41684
Number of sequences better than 10.0: 54
Number of HSP's gapped: 41552
Number of HSP's successfully gapped: 63
Length of query: 325
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 196
Effective length of database: 633,664,753
Effective search space: 124198291588
Effective search space used: 124198291588
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.31  top: 0.90  tms: 0.07  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U12110-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 10
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 6
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0