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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12086-1
Contig ID Contig-U12086-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Contig-U12086-1Q.Seq.d
ATAATACAACAACATCAAATAATACAGATTCAACAATGTTATCACCATCA
AAAGATGATAATAATAATAAAATTAAATCACCAAGAGGATCAAAGAAAAA
AGAAAAAGCAAATGTAGTTATTGATTCAACAGATGAAGAAAGAGAGTTGA
AAAAAGCAGAGAAGAAACAAAAACGTCAATCTAAAAAAGAACAAAAAGAA
AGAGAACAAAAAGAAAAGGAGGAATCTAAACATATAGATATTAGTGGTGA
TGATAATGGCGGTGGTGGTGAGGGAGAGGAGGATGAGGAGGAGGATGATG
ATGGAAATCACAATTTCATTTCAACACCACCATTATTAGATCCAAATACT
GATAGGGAAGAAATTGATAGAGAAAAGAAGAAAAGAGAAGAAGTTGAGGA
TACTGAAATTCAAAATACTCCACAAGAGAAACTCAATCATTATAAGAAAA
TATTTGGACAAATCATTCAACTTTTAATGAAAAAGGATACACATGGTTTC
TTTTATTCACCAGTGACTGAGCAAATTGCACCAAATTATTTTAAATACAT
TAGAGNNNNNNNNN----------NNNNNNNNNNCNAGTGCTTCTGAAGT
TTCAATTGATAGTGATCAATTTAAACAAGTTGGTGAAATTTTAGAGAGTA
AAGGTGTNGATATTGAATTTTTAAATTCATTAATAGTTTCAACTCCACCA
TTACAAACTAATGAAAATATTACTTCACCTTCATTAAATAATCAACAACA
ACCACAACAACAGCAACAACAACAACAACAAGATGTAAATAATAATAACA
ACACTAATACTAATCAAACTCAACAATCATCACCACAATTACAGCCAATG
CAAATTGAAACAACTACAACAACAAATAATAATACTACAACAACAAGTTT
AACAACATCACCAGTAACACCAAATACATTATTACTTCAAGAACATCAAG
AACAATTTATTCAAACTTTTAATCAAATTTTAAGAGAAAATTATGAAGAG
TTATTTAGATTACAAGTTTCACAATATCATAGAAATGGTTTCCCAAGAGC
TTCAGAGGATGAATTCCAAAAAATTTCAACCGTTACTGAAAATATTAAAG
CCATCGGATTA
Gap gap included
Contig length 1101
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5710254
End point 5711336
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U12086
List of clone(s) 

est1=SHG392F,1,555
est2=SHG392Z,556,1083
Translated Amino Acid sequence 
NTTTSNNTDSTMLSPSKDDNNNKIKSPRGSKKKEKANVVIDSTDEERELKKAEKKQKRQS
KKEQKEREQKEKEESKHIDISGDDNGGGGEGEEDEEEDDDGNHNFISTPPLLDPNTDREE
IDREKKKREEVEDTEIQNTPQEKLNHYKKIFGQIIQLLMKKDTHGFFYSPVTEQIAPNYF
KYIRXXX---

---XXXXSASEVSIDSDQFKQVGEILESKGVDIEFLNSLIVSTPPLQTNENITSPSLNNQ
QQPQQQQQQQQQDVNNNNNTNTNQTQQSSPQLQPMQIETTTTTNNNTTTTSLTTSPVTPN
TLLLQEHQEQFIQTFNQILRENYEELFRLQVSQYHRNGFPRASEDEFQKISTVTENIKAI
GL
Translated Amino Acid sequence (All Frames) 
Frame A:
iiqqhqiiqiqqcyhhqkmiiiiklnhqedqrkkkkqm*lliqqmkkes*kkqrrnknvn
lkknkkkenkkkrrnlni*ilvvmimavvvrerrmrrrmmmeitisfqhhhy*iqiligk
kliekrrkekklrilkfkilhkrnsiiirkyldksfnf**krihmvsfihq*lsklhqii
lntlexxx---

---XXXXSASEVSIDSDQFKQVGEILESKGVDIEFLNSLIVSTPPLQTNENITSPSLNNQ
QQPQQQQQQQQQDVNNNNNTNTNQTQQSSPQLQPMQIETTTTTNNNTTTTSLTTSPVTPN
TLLLQEHQEQFIQTFNQILRENYEELFRLQVSQYHRNGFPRASEDEFQKISTVTENIKAI
GL

Frame B:
*ynnik*yrfnnvitikr*****n*itkrikekrkskcsy*fnr*rkrveksreetktsi
*krtkrkrtkrkggi*tyry*w***wrww*grgg*ggg**wksqfhfnttiirsky**gr
n**rkeekrrs*gy*nskystretqsl*eniwtnhstfnekgytwfllftsd*anctklf
*ih*xxx---

---xxxxvllkfqlivinlnklvkf*rvkvxilnf*ih**fqlhhyklmkillhlh*iin
nnhnnsnnnnnkm*iiittliliklnnhhhnysqcklkqlqqqiiilqqqv*qhhq*hqi
hyyfkniknnlfkllikf*ekimksyldykfhniiemvsqelqrmnskkfqpllkilkps
d

Frame C:
NTTTSNNTDSTMLSPSKDDNNNKIKSPRGSKKKEKANVVIDSTDEERELKKAEKKQKRQS
KKEQKEREQKEKEESKHIDISGDDNGGGGEGEEDEEEDDDGNHNFISTPPLLDPNTDREE
IDREKKKREEVEDTEIQNTPQEKLNHYKKIFGQIIQLLMKKDTHGFFYSPVTEQIAPNYF
KYIRXXX---

---xxxxcf*sfn***si*tsw*nfre*rcxy*ifkfinsfnstitn**kyyftfik*st
tttttatttttrck***qh*y*snstiittitanan*nnynnk**yynnkfnnitsntky
iitsrtsrtiysnf*snfkrkl*rvi*itsftis*kwfpksfrg*ipknfnry*ky*shr
i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12086-1 (Contig-U12086-1Q)
/CSM_Contig/Contig-U12086-1Q.Seq.d
         (1111 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Conti...   404  e-113
Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U03201-1 (Contig-U03201-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U14133-1 (Contig-U14133-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U06778-1 (Contig-U06778-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U03750-1 (Contig-U03750-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13409-1 (Contig-U13409-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13069-1 (Contig-U13069-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Contig-U12086-1Q.Seq.d
          Length = 1111

 Score =  404 bits (204), Expect = e-113
 Identities = 204/204 (100%)
 Strand = Plus / Plus

                                                                        
Query: 908  tcaccagtaacaccaaatacattattacttcaagaacatcaagaacaatttattcaaact 967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  tcaccagtaacaccaaatacattattacttcaagaacatcaagaacaatttattcaaact 967

                                                                        
Query: 968  tttaatcaaattttaagagaaaattatgaagagttatttagattacaagtttcacaatat 1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  tttaatcaaattttaagagaaaattatgaagagttatttagattacaagtttcacaatat 1027

                                                                        
Query: 1028 catagaaatggtttcccaagagcttcagaggatgaattccaaaaaatttcaaccgttact 1087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 catagaaatggtttcccaagagcttcagaggatgaattccaaaaaatttcaaccgttact 1087

                                    
Query: 1088 gaaaatattaaagccatcggatta 1111
            ||||||||||||||||||||||||
Sbjct: 1088 gaaaatattaaagccatcggatta 1111


 Score =  321 bits (162), Expect = 9e-88
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 394 ttgaggatactgaaattcaaaatactccacaagagaaactcaatcattataagaaaatat 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgaggatactgaaattcaaaatactccacaagagaaactcaatcattataagaaaatat 453

                                                                       
Query: 454 ttggacaaatcattcaacttttaatgaaaaaggatacacatggtttcttttattcaccag 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttggacaaatcattcaacttttaatgaaaaaggatacacatggtttcttttattcaccag 513

                                                     
Query: 514 tgactgagcaaattgcaccaaattattttaaatacattagag 555
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgactgagcaaattgcaccaaattattttaaatacattagag 555


 Score =  303 bits (153), Expect = 2e-82
 Identities = 156/156 (100%)
 Strand = Plus / Plus

                                                                       
Query: 587 agtgcttctgaagtttcaattgatagtgatcaatttaaacaagttggtgaaattttagag 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agtgcttctgaagtttcaattgatagtgatcaatttaaacaagttggtgaaattttagag 646

                                                                       
Query: 647 agtaaaggtgtngatattgaatttttaaattcattaatagtttcaactccaccattacaa 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 agtaaaggtgtngatattgaatttttaaattcattaatagtttcaactccaccattacaa 706

                                               
Query: 707 actaatgaaaatattacttcaccttcattaaataat 742
           ||||||||||||||||||||||||||||||||||||
Sbjct: 707 actaatgaaaatattacttcaccttcattaaataat 742


 Score =  180 bits (91), Expect = 2e-45
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ataatacaacaacatcaaataatacagattcaacaatgttatcaccatcaaaagatgata 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ataatacaacaacatcaaataatacagattcaacaatgttatcaccatcaaaagatgata 60

                                         
Query: 61 ataataataaaattaaatcaccaagaggatc 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 ataataataaaattaaatcaccaagaggatc 91


 Score =  153 bits (77), Expect = 5e-37
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                       
Query: 782 gatgtaaataataataacaacactaatactaatcaaactcaacaatcatcaccacaatta 841
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gatgtaaataataataacaacactaatactaatcaaactcaacaatcatcaccacaatta 841

                            
Query: 842 cagccaatgcaaattga 858
           |||||||||||||||||
Sbjct: 842 cagccaatgcaaattga 858


 Score =  101 bits (51), Expect = 2e-21
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                              
Query: 306 aatcacaatttcatttcaacaccaccattattagatccaaatactgatagg 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatcacaatttcatttcaacaccaccattattagatccaaatactgatagg 356


 Score = 99.6 bits (50), Expect = 6e-21
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 219 gaggaatctaaacatatagatattagtggtgatgataatggcggtggtgg 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaggaatctaaacatatagatattagtggtgatgataatggcggtggtgg 268


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 gcaaatgtagttattgattca 128
           |||||||||||||||||||||
Sbjct: 108 gcaaatgtagttattgattca 128


>Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Contig-U11534-1Q.Seq.d
          Length = 1418

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 50   aaaagatgataataataataaaa 72
            |||||||||||||||||||||||
Sbjct: 1239 aaaagatgataataataataaaa 1261


>Contig-U03201-1 (Contig-U03201-1Q) /CSM_Contig/Contig-U03201-1Q.Seq.d
          Length = 123

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 788 aataataataacaacactaatactaat 814
           ||||||||||||| |||||||||||||
Sbjct: 43  aataataataacaccactaatactaat 69


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,950
Number of Sequences: 6905
Number of extensions: 41950
Number of successful extensions: 11360
Number of sequences better than 10.0: 1025
length of query: 1111
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1095
effective length of database: 5,564,391
effective search space: 6093008145
effective search space used: 6093008145
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Contig-U12086-1Q.Seq.d
         (1111 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ406908) Dictyostelium discoideum cDNA clone:dds36h23, 3' ...   363   e-179  2
(BJ394885) Dictyostelium discoideum cDNA clone:dds36h23, 5' ...   319   e-156  5
(ER600188) 1093016240651 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.20   2
(ER287799) 1092343580978 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.72   1
(EK407281) 1095505083414 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.72   1
(EK341871) 1095467065470 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.72   1
(EK315656) 1095462412282 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.72   1
(EK307567) 1095462386069 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.72   1
(EK209487) 1095460093654 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.72   1
(EJ636549) 1092998602277 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.72   1
(EJ605058) 1092962000933 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.72   1
(EJ045436) 1095454115634 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.72   1
(DT492094) WS02549.C21_K09 PT-MB-N-A-15 Populus trichocarpa ...    48   0.72   1
(DT490698) WS02545.B21_L04 PT-MB-N-A-15 Populus trichocarpa ...    48   0.72   1
(DT486610) WS02531.B21_H11 PT-MB-N-A-15 Populus trichocarpa ...    48   0.72   1
(EJ116215) 1092343354485 Global-Ocean-Sampling_GS-27-01-01-1...    32   1.1    3
(AM487947) Vitis vinifera, whole genome shotgun sequence, co...    42   1.2    2
(AC116696) Mus musculus chromosome 3, clone RP24-425N23, com...    46   2.8    1
(AY116455) Eucalyptus globulus subsp. bicostata isolate EgRT...    46   2.8    1
(AC131363) Rattus norvegicus clone CH230-96E12, WORKING DRAF...    46   2.8    1
(AC214907) Pan troglodytes clone rp43-22d22, WORKING DRAFT S...    46   2.8    1
(ET309722) S0120B08_T7 CHORI-214 Salmo salar genomic clone S...    46   2.8    1
(CT398263) Sus scrofa genomic clone CH242-500H10, genomic su...    46   2.8    1
(BG535382) 602563043F1 NIH_MGC_77 Homo sapiens cDNA clone IM...    46   2.8    1
(BG427318) 602494396F1 NIH_MGC_75 Homo sapiens cDNA clone IM...    46   2.8    1
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...    32   3.2    4
(AC176443) Strongylocentrotus purpuratus clone R3-3066P7, WO...    44   4.1    6
(ES490316) BGBV-aad03b12.b1 Snail_EST_pSMART Biomphalaria gl...    40   4.4    2
(CP000936) Streptococcus pneumoniae Hungary19A-6, complete g...    34   4.4    2
(CP001033) Streptococcus pneumoniae CGSP14, complete genome.       34   4.5    2
(AE005672) Streptococcus pneumoniae TIGR4, complete genome.        34   4.5    2
(CP001015) Streptococcus pneumoniae G54, complete genome.          34   4.5    2
(CP000410) Streptococcus pneumoniae D39, complete genome.          34   4.5    2
(AC186677) Medicago truncatula chromosome 7 BAC clone mth2-4...    40   4.6    5
(CS272300) Sequence 4985 from Patent EP1630230.                    34   5.1    2
(AX571766) Sequence 4985 from Patent WO02077021.                   34   5.1    2
(AL449923) Streptococcus pneumoniae serotype 19F  *** SEQUEN...    34   5.2    2
(AC126266) Mus musculus BAC clone RP23-402N17 from chromosom...    34   5.3    2
(CU752740) A BAC library has been constructed from PN40024 g...    38   5.5    2
(AE008567) Streptococcus pneumoniae R6 section 183 of 184 of...    34   6.3    2
(EA030031) Sequence 16 from patent US 7141418.                     34   6.3    2
(DL072539) Streptococcus pneumoniae Polynucleotides and Sequ...    34   6.3    2
(CQ788925) Sequence 16 from Patent EP1400592.                      34   6.3    2
(BD003696) Polynucleotide of Streptococcus pneumoniae and se...    34   6.3    2
(AR218784) Sequence 16 from patent US 6420135.                     34   6.3    2
(AC012089) Homo sapiens 3 BAC RP11-758L3 (Roswell Park Cance...    42   6.5    3
(GC475066) Sequence 206 from patent US 7384775.                    34   6.7    2
(DD123113) NOVEL STREPTOCOCCUS PNEUMONIAE OPEN READING FRAME...    34   6.7    2
(AR586138) Sequence 257 from patent US 6800744.                    34   6.7    2
(CS814048) Sequence 957 from Patent WO2007106407.                  34   6.7    2
(GC513385) Sequence 1733 from patent US 7405291.                   34   6.7    2
(GC508649) Sequence 1733 from patent US 7404958.                   34   6.7    2
(GC496137) Sequence 1733 from patent US 7396532.                   34   6.7    2
(GC486267) Sequence 1733 from patent US 7390493.                   34   6.7    2
(GC483048) Sequence 1733 from patent US 7388090.                   34   6.7    2
(GC478095) Sequence 1733 from patent US 7385047.                   34   6.7    2
(EA779224) Sequence 1733 from patent US 7381816.                   34   6.7    2
(EA776561) Sequence 1733 from patent US 7381815.                   34   6.7    2
(EA773898) Sequence 1733 from patent US 7381814.                   34   6.7    2
(EA768274) Sequence 1733 from patent US 7378514.                   34   6.7    2
(EA763281) Sequence 1733 from patent US 7378258.                   34   6.7    2
(EA444906) Sequence 1733 from patent US 7338786.                   34   6.7    2
(EA438249) Sequence 1733 from patent US 7335494.                   34   6.7    2
(EA435586) Sequence 1733 from patent US 7335493.                   34   6.7    2
(EA422174) Sequence 1733 from patent US 7326544.                   34   6.7    2
(EA047161) Sequence 1733 from patent US 7153952.                   34   6.7    2
(EA042196) Sequence 1733 from patent US 7151171.                   34   6.7    2
(EA026242) Sequence 1733 from patent US 7135560.                   34   6.7    2
(EA018767) Sequence 1733 from patent US 7129340.                   34   6.7    2
(EA016104) Sequence 1733 from patent US 7129339.                   34   6.7    2
(EA003776) Sequence 1733 from patent US 7122368.                   34   6.7    2
(AR985030) Sequence 1733 from patent US 7115731.                   34   6.7    2
(AR932002) Sequence 1733 from patent US 7098023.                   34   6.7    2
(AR912032) Sequence 1733 from patent US 7081530.                   34   6.7    2
(AR905087) Sequence 1733 from patent US 7074914.                   34   6.7    2
(AR480829) Sequence 1733 from patent US 6699703.                   34   6.7    2
(CS272004) Sequence 4681 from Patent EP1630230.                    34   6.7    2
(AX571470) Sequence 4681 from Patent WO02077021.                   34   6.7    2
(AX676310) Sequence 24 from Patent WO02079241.                     34   6.8    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    36   7.0    6
(AC079613) Homo sapiens BAC clone RP11-325O22 from 2, comple...    40   7.5    3
(U97002) Caenorhabditis elegans cosmid K09H11, complete sequ...    44   9.0    3

>(BJ406908) Dictyostelium discoideum cDNA clone:dds36h23, 3' end,
            single read.
          Length = 528

 Score =  363 bits (183), Expect(2) = e-179
 Identities = 183/183 (100%)
 Strand = Plus / Minus


Query: 929  ttattacttcaagaacatcaagaacaatttattcaaacttttaatcaaattttaagagaa 988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184  ttattacttcaagaacatcaagaacaatttattcaaacttttaatcaaattttaagagaa 125


Query: 989  aattatgaagagttatttagattacaagtttcacaatatcatagaaatggtttcccaaga 1048
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124  aattatgaagagttatttagattacaagtttcacaatatcatagaaatggtttcccaaga 65


Query: 1049 gcttcagaggatgaattccaaaaaatttcaaccgttactgaaaatattaaagccatcgga 1108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64   gcttcagaggatgaattccaaaaaatttcaaccgttactgaaaatattaaagccatcgga 5


Query: 1109 tta 1111
            |||
Sbjct: 4    tta 2

 Score =  303 bits (153), Expect(2) = e-179
 Identities = 156/156 (100%)
 Strand = Plus / Minus


Query: 587 agtgcttctgaagtttcaattgatagtgatcaatttaaacaagttggtgaaattttagag 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agtgcttctgaagtttcaattgatagtgatcaatttaaacaagttggtgaaattttagag 467


Query: 647 agtaaaggtgtngatattgaatttttaaattcattaatagtttcaactccaccattacaa 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agtaaaggtgtngatattgaatttttaaattcattaatagtttcaactccaccattacaa 407


Query: 707 actaatgaaaatattacttcaccttcattaaataat 742
           ||||||||||||||||||||||||||||||||||||
Sbjct: 406 actaatgaaaatattacttcaccttcattaaataat 371

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 912,134,173
Number of extensions: 58876571
Number of successful extensions: 4850621
Number of sequences better than 10.0: 83
Length of query: 1111
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1087
Effective length of database: 97,308,875,965
Effective search space: 105774748173955
Effective search space used: 105774748173955
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Contig-U12086-1Q.Seq.d
         (1111 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6NVM8) RecName: Full=Bromodomain-containing protein 9;  &BC067...    41   0.086
(Q7ZUF2) RecName: Full=Bromodomain-containing protein 9;  &BC049...    40   0.19
AK024392_1(AK024392|pid:none) Homo sapiens cDNA FLJ14330 fis, cl...    38   0.73
BC041590_1(BC041590|pid:none) Homo sapiens bromodomain containin...    37   0.96
AK301987_1(AK301987|pid:none) Homo sapiens cDNA FLJ61450 complet...    37   0.96
AK299157_1(AK299157|pid:none) Homo sapiens cDNA FLJ58253 complet...    37   0.96
(Q9H8M2) RecName: Full=Bromodomain-containing protein 9; AltName...    37   0.96
BT045548_1(BT045548|pid:none) Salmo salar clone ssal-rgf-524-271...    35   3.6
AY256967_1(AY256967|pid:none) Xenopus laevis nuclear transcripto...    35   3.6

>(Q6NVM8) RecName: Full=Bromodomain-containing protein 9;
           &BC067977_1(BC067977|pid:none)
          Length = 596

 Score = 40.8 bits (94), Expect = 0.086
 Identities = 20/48 (41%), Positives = 30/48 (62%)
 Frame = +3

Query: 411 QNTPQEKLNHYKKIFGQIIQLLMKKDTHGFFYSPVTEQIAPNYFKYIR 554
           ++TP ++L  Y       ++ L +KD +GFF  PVT+QIAP YF  I+
Sbjct: 149 ESTPLQQLLEY------FLRQLQRKDPNGFFAFPVTDQIAPGYFMIIK 190

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 899,801,726
Number of extensions: 15915334
Number of successful extensions: 36190
Number of sequences better than 10.0: 9
Number of HSP's gapped: 36177
Number of HSP's successfully gapped: 9
Length of query: 370
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 240
Effective length of database: 630,428,194
Effective search space: 151302766560
Effective search space used: 151302766560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.12  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U12086-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0