Contig-U12082-1 |
Contig ID |
Contig-U12082-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
763 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
3373572 |
End point |
3372827 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U12082 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12082-1 (Contig-U12082-1Q) /CSM_Contig/Contig-U12082-1Q.Seq.d (773 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ406551) Dictyostelium discoideum cDNA clone:dds35l14, 3' ... 387 0.0 4 (AC180212) Strongylocentrotus purpuratus clone R3-3006C12, W... 62 3e-05 1 (AC180145) Strongylocentrotus purpuratus clone R3-4004A12, W... 62 3e-05 1 (AC168658) Strongylocentrotus purpuratus clone R3-3017A12, W... 62 3e-05 1 (CR931998) Zebrafish DNA sequence from clone DKEY-261G23 in ... 58 5e-04 1 (CR932357) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 58 5e-04 1 (CB258938) 07-E010796-014-001-M01-T7R MPIZ-ADIS-014 Arabidop... 44 0.001 2 (DR375292) 105793 CERES-148 Arabidopsis thaliana cDNA clone ... 44 0.001 2 (BU006021) QGG9L18.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ... 46 0.002 2 (FC833010) CBHI4825.fwd CBHI Metridium senile tentacle Metri... 54 0.002 2 (FF577306) TTEEQ42THB Tetrahymena thermophila conjugation cD... 54 0.002 2 (AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 44 0.002 2 (FD947780) RS2GQ82TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 42 0.002 3 (AC124235) Mus musculus chromosome 13, clone RP23-273G24, co... 56 0.002 1 (EF514213) Solanum tuberosum strain P6/210 contig r1, comple... 56 0.002 1 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 56 0.002 1 (AC131578) Mus musculus chromosome 13 clone RP23-37L15 map 1... 56 0.002 1 (AC112359) Rattus norvegicus clone CH230-242K10, WORKING DRA... 56 0.002 1 (AC181039) Strongylocentrotus purpuratus clone R3-3029B14, W... 56 0.002 1 (EB246766) PEG003-C-229632-501 Normalized Pedal-Pleural Gang... 56 0.002 1 (EB241260) PEG003-C-217803-501 Normalized Pedal-Pleural Gang... 56 0.002 1 (EB240796) PEG003-C-217226-501 Normalized Pedal-Pleural Gang... 56 0.002 1 (EB236863) PEG003-C-222153-501 Normalized Pedal-Pleural Gang... 56 0.002 1 (EB231416) PEG003-C-201969-501 Normalized Pedal-Pleural Gang... 56 0.002 1 (EB224910) PEG002-C-106771-501 Normalized Pedal-Pleural Gang... 56 0.002 1 (FD570768) RS2FI43TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 42 0.002 3 (FD943660) RS2GQ82JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ... 42 0.003 3 (FE712015) FCMI-PM-245 WSSV infected Penaeus monodon cDNA li... 40 0.003 2 (AM058550) Brassica oleracea var. alboglabra EST, clone AAF... 42 0.004 2 (AV783607) Arabidopsis thaliana cDNA clone:RAFL05-11-G17, 3'... 42 0.005 2 (AV554530) Arabidopsis thaliana cDNA clone:RZ93h11R, 5' end. 42 0.005 2 (AL491824) T. brucei sheared genomic DNA clone 320b05, rever... 34 0.005 3 (AM385867) Brassica oleracea var. alboglabra EST, clone AAF... 42 0.005 2 (AM389229) Brassica oleracea var. alboglabra EST, clone AAF... 42 0.005 2 (BT006569) Arabidopsis thaliana At1g47970 gene, complete cds. 42 0.005 2 (EH414508) OL137R Brassica oleracea var. alboglabra leaf cDN... 42 0.005 2 (AM390759) Brassica oleracea var. alboglabra EST, clone AAF... 42 0.006 2 (ES937547) 46RDOAG_UP_051_A09_01FEB2006_079 Brassica olerace... 42 0.006 2 (BX818414) Arabidopsis thaliana Full-length cDNA Complete se... 42 0.006 2 (AF386997) Arabidopsis thaliana Unknown protein (T2J15.12) m... 42 0.007 2 (BT000731) Arabidopsis thaliana clone RAFL08-11-G02 (R11308)... 42 0.008 2 (CR847998) Zebrafish DNA sequence from clone DKEY-205L13 in ... 54 0.008 1 (BX936437) Zebrafish DNA sequence from clone DKEYP-96G2 in l... 54 0.008 1 (BX247887) Zebrafish DNA sequence from clone CH211-142L10. 54 0.008 1 (BX001038) Zebrafish DNA sequence from clone CH211-12M10 in ... 54 0.008 1 (AB180090) Nestor meridionalis DNA, microsatellite locus Nme... 54 0.008 1 (AC107711) Mus musculus chromosome 14, clone RP23-291I12, co... 54 0.008 1 (AM451088) Vitis vinifera, whole genome shotgun sequence, co... 54 0.008 1 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 54 0.008 1 (AC157976) Strongylocentrotus purpuratus clone R3-4002B10, W... 54 0.008 1 (AC146990) Lytechinus variegatus clone BLV-104N16, WORKING D... 54 0.008 1 (AC141967) Rattus norvegicus clone CH230-356E15, WORKING DRA... 54 0.008 1 (AC133378) Rattus norvegicus clone CH230-58K17, *** SEQUENCI... 54 0.008 1 (AC131204) Rattus norvegicus clone CH230-258P17, WORKING DRA... 54 0.008 1 (AC121435) Rattus norvegicus clone CH230-210I5, *** SEQUENCI... 54 0.008 1 (AC120294) Rattus norvegicus clone CH230-166P16, WORKING DRA... 54 0.008 1 (AC119054) Rattus norvegicus strain Brown Norway clone RP31-... 54 0.008 1 (AC109711) Rattus norvegicus clone CH230-29O9, *** SEQUENCIN... 54 0.008 1 (AC094927) Rattus norvegicus clone CH230-6B23, WORKING DRAFT... 54 0.008 1 (AC094661) Rattus norvegicus clone CH230-5C1, *** SEQUENCING... 54 0.008 1 (CU856137) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 54 0.008 1 (BX942830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 54 0.008 1 (AC201677) Strongylocentrotus purpuratus clone R3-1014A5, WO... 54 0.008 1 (AC201533) Strongylocentrotus purpuratus clone R3-3090N2, WO... 54 0.008 1 (AC184488) Strongylocentrotus purpuratus clone R3-1014L6, WO... 54 0.008 1 (AC184485) Strongylocentrotus purpuratus clone R3-1014E21, W... 54 0.008 1 (AC184294) Strongylocentrotus purpuratus clone R3-18E9, WORK... 54 0.008 1 (AC184253) Strongylocentrotus purpuratus clone R3-3060D8, WO... 54 0.008 1 (AC181399) Strongylocentrotus purpuratus clone R3-4K03, WORK... 54 0.008 1 (AC179897) Strongylocentrotus purpuratus clone R3-1003N16, W... 54 0.008 1 (AC179098) Strongylocentrotus purpuratus clone R3-4011B7, WO... 54 0.008 1 (AC178870) Strongylocentrotus purpuratus clone R3-27B10, WOR... 54 0.008 1 (AC177307) Strongylocentrotus purpuratus clone R3-46C10, WOR... 54 0.008 1 (AC168417) Strongylocentrotus purpuratus clone R3-4002B10, W... 54 0.008 1 (ET414666) S0205A18_SP6 CHORI-214 Salmo salar genomic clone ... 54 0.008 1 (ET252885) S0245E19_SP6 CHORI-214 Salmo salar genomic clone ... 54 0.008 1 (EK202564) 1095460062420 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.008 1 (DX986629) CHORI103-5K24.TJ CHORI103 Schistosoma mansoni gen... 54 0.008 1 (EL381359) CFFM18803.b1_F22.ab1 CFF(LMS) safflower Carthamus... 54 0.008 1 (CX585946) TTE00029031 Amplicon Express - Conjugative Form T... 54 0.008 1 (FF576363) TTEE335THB Tetrahymena thermophila conjugation cD... 54 0.008 1 (EY319156) CAWX675.rev CAWX Helobdella robusta Primary Early... 54 0.008 1 (EX279799) 1566875_5_F17_075 PY06 Carica papaya cDNA, mRNA s... 54 0.008 1 (EY361287) CAWZ7644.rev CAWZ Helobdella robusta Primary Late... 40 0.009 3 (AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 40 0.012 3 (AC169948) Bos taurus clone CH240-243B14, WORKING DRAFT SEQU... 52 0.018 2 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 36 0.020 2 (EE525810) 37RDBRH_UP_046_G04_10JUL2004_020 Brassica rapa 37... 40 0.020 2 (AC122097) Rattus norvegicus clone CH230-108A24, WORKING DRA... 42 0.021 2 (AC133413) Rattus norvegicus clone CH230-275C14, WORKING DRA... 40 0.021 2 (AC181593) Strongylocentrotus purpuratus clone R3-1109E11, W... 40 0.021 2 (AC094347) Rattus norvegicus clone CH230-3K2, WORKING DRAFT ... 52 0.022 2 (BJ345808) Dictyostelium discoideum cDNA clone:dda28k20, 3' ... 42 0.024 2 (EY323003) CAWX8756.rev CAWX Helobdella robusta Primary Earl... 40 0.026 2 (EY352104) CAWZ18505.fwd CAWZ Helobdella robusta Primary Lat... 40 0.026 2 (AC174936) Strongylocentrotus purpuratus clone R3-4016H14, W... 44 0.029 4 (CR855265) Zebrafish DNA sequence from clone CH211-195E6 in ... 52 0.032 1 (BV211624) BARC14 Wheat var Chinese Spring Genomic DNA Triti... 52 0.032 1 (AC134577) Mus musculus BAC clone RP24-79G11 from chromosome... 52 0.032 1 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 52 0.032 1
>(BJ406551) Dictyostelium discoideum cDNA clone:dds35l14, 3' end, single read. Length = 644
Score = 387 bits (195), Expect(4) = 0.0 Identities = 198/198 (100%) Strand = Plus / Minus
Query: 131 caatcatttatagataaacaaaaacaaatcaataatgacaatagtaatgaggaatatgat 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 644 caatcatttatagataaacaaaaacaaatcaataatgacaatagtaatgaggaatatgat 585
Query: 191 gaaattggaggcacaatcgttgataatgcatcattaaattcaaaagttttatcaccatca 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 584 gaaattggaggcacaatcgttgataatgcatcattaaattcaaaagttttatcaccatca 525
Query: 251 ccaaagaaaattcaagatcntggtatagtatctgattctgatcatagtgatgacgacgat 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 524 ccaaagaaaattcaagatcntggtatagtatctgattctgatcatagtgatgacgacgat 465
Query: 311 gatgatgataataataat 328 |||||||||||||||||| Sbjct: 464 gatgatgataataataat 447
Score = 190 bits (96), Expect(4) = 0.0 Identities = 99/99 (100%) Strand = Plus / Minus
Query: 594 caccaataatgcctgtttcaacaccagtaattgaagcacgtcaagttattaaaaagcgtt 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caccaataatgcctgtttcaacaccagtaattgaagcacgtcaagttattaaaaagcgtt 122
Query: 654 cncttcttgatttctttagtaaagttgaaggtgttagaa 692 ||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cncttcttgatttctttagtaaagttgaaggtgttagaa 83
Score = 153 bits (77), Expect(4) = 0.0 Identities = 77/77 (100%) Strand = Plus / Minus
Query: 393 taggtgacaatgatctatatgataatgatatatatgataatgaagatcctgaggacgata 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 taggtgacaatgatctatatgataatgatatatatgataatgaagatcctgaggacgata 323
Query: 453 agatcgaaccaatattt 469 ||||||||||||||||| Sbjct: 322 agatcgaaccaatattt 306
Score = 109 bits (55), Expect(4) = 0.0 Identities = 55/55 (100%) Strand = Plus / Minus
Query: 719 attccaccacaatttgaagaggatagtgatgatgaatcctagaaactgaatctga 773 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 attccaccacaatttgaagaggatagtgatgatgaatcctagaaactgaatctga 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 518,117,387 Number of extensions: 38046991 Number of successful extensions: 4288764 Number of sequences better than 10.0: 4772 Length of query: 773 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 749 Effective length of database: 97,308,875,965 Effective search space: 72884348097785 Effective search space used: 72884348097785 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |