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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12079-1
Contig ID Contig-U12079-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Contig-U12079-1Q.Seq.d
GAATTTAGTAATTTTAATAAATAAATGATAAATAGATCGAATTAAATTGA
TCTTATTTATAAAGTTGAAGATGGTCTAACATCTGGTAAATTTAAAAAGT
AACCATTTACAGATGGTTTAGCAGTATTTGTAGCACGAATATTGTAAATG
TATGTCCAATATACATCTGGAATCTTTATACCAACTCTATCGAAACTTTC
CCAACTTCCACCAGTATTCATAAAATTGACGAGTTTTAAAAATAAATGAG
TACCATCAAAGTAGTATTGTTTGCCATTACCTTGTTTAACTGCAAGTGCA
GATGTTGTCTTTGTAATAGTGTATGTATATTGATTAGAATAATCATACTC
ACTTGTAATTGTAAAAGTTGTACCAGTTGGATATGGTATAGCTAAAAAAA
TATATTCACCAAATGCAATTTGAGCTGTCCATATCCTTAAATAATTTGGT
GTACCAATTGTGAAATAAGCATACCAACCCATATTTGAAACACCAGTAAT
ACCAGGATTTCTAGTTAATAATGTTTTTCTTTCATCATTTATACCACTAC
CAAATAAACTAATTGAACCAATGTATGAATCTGGGTCTTGTTCAAGTTCA
CGTTCCATAAAACCTGGTACCCAAAATTCAATATTAGCAAGACCTTTAGT
ACCTTTAGTACAAACATAACAATTCCAATCTGAATTGAATGAACAAGTAT
TATCGAATTGCCAAAATTTCTCATGAGATCCAATTAGGGTTGGAACATTT
TTACCTGTTAAACTACCATCCCAATCGATGAAATTAAAGAATCTACTACT
ACCAGTACTATTGACAGGAATATTATGACCGATGAATTGTGAGGTAGCAG
TGTTTTGAATTGTGATATTCTTTGATACTGATATACCTTGTGGAAGGAAT
TCTGAACTATGTGTCATACTAATGATGACTCTATTATCTTCTTCATTGGA
TGATGCATTTTGATACTTTATAAAATTTCTAAAGATGATATTACTAATGA
TGGTCTGAACGTAAGTATCATAAAATTGGAAACCTTGTCTAGTGTATTCG
ACACTTGCTGATAAGATATTACCCGAGTGACCATTGACGATTGCATTTGA
TAACCATGCTTCACCAAATAATGAAGCAGGTCTTCTAGAGTCATGACTCT
CCAAATTGACTGCCTCAGTTCTTTCACCCCACATTGATAAACCTCTAT--
--------NNNNNNNNNNGAAGAAATTGTATTATCACTTGATAATGCTTG
ACCCAATTTAAAATTAAAAGAGAATACATAATTTACGTTGGCTCTTAATG
CTGGTGATGGTATCTTTGAAATTAACCAATTACTATCTGGTGAATAGGTT
TCATTAAAATTAATAGAAAATGAATTTGCAATACCATTTGGTCCATCTGA
AATACTTTTTTCATTGAACTTATATCTTGATCTAAATCTTAAATTGCTTT
TATCAAAATTAAAATCTAATATTGGTGTTACACTTGAAAATGATGGTGAA
CTTGGTGAACTTGATGATGCCATTGTTGGTCTCCATGTTGATGTTGTTGG
ACATGAATCTGTTGGTGTAGTTGTTGGTGTAGTTGTTGGTGTAGTTGTTG
GAGTTATTGTTGGTGTCGTTGTTGGTGTTGTTGTTGGTGTAGTTGTTGGT
GTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGAGT
AGTTGTTGGAGTAGTTGTTGGAGTAGTTGTTGGTGTAGTTGTTGGTGTGG
TTGTTGGAGTGGTTGTTGGAGTGGTTGTTGGAGTAGTACCAGTGATTGTG
ACTCCATTAGCATTGATAANTAATTTAGAAGAAGTACNTTCATTACNACT
ACCAGTAGTATTTAAACCATCCACTTTAATATCACAAGCTTCATCGATTT
TTAAACTATTACTATAAATATNCTAATAAACC
Gap gap included
Contig length 1922
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 4
Link to clone list U12079
List of clone(s) 

est1=VHJ522Z,1,740
est2=VHI534Z,77,742
est3=SHF261F,587,1199
est4=SHF261Z,1200,1914
Translated Amino Acid sequence 
efsnfnk*minrsn*idliykvedgltsgkfkk*pftdglavfvaril*myvqytsgifi
ptlsklsqlppvfikltsfknk*vpsk*yclplpcltasadvvfvivyvy*le*syslvi
vkvvpvgygiakkiyspnai*avhilk*fgvpivk*ayqpifetpvipgflvnnvflssf
iplpnkliepmyesgscsssrsikpgtqnsilarplvplvqt*qfqselneqvlsncqnf
s*dpirvgtflpvklpsqsmklknlllpvlltgil*pmncevavf*iviffdtdipcgrn
selcvilmmtllssslddaf*yfikflkmillmmv*t*vs*nwkpclvystladkilpe*
pltiafdnhaspnneaglles*LSKLTASVLSPHIDKPL---

---XXXKKLYYHLIMLDPI*n*krihnlrwllmlvmvslkltnyylvnrfh*n**kmnlq
yhlvhlkyffh*tyili*ilncfyqn*nlilvlhlkmmvnlvnlmmpllvsmlmlldmnl
lv*llv*llv*llelllvsllvlllv*llv*lle*lle*lle*lle*lle*lle*llv*l
lvwllewllewlle*yq*l*lh*h**xi*kkyxhyxyq*ylnhpl*yhklhrflnyyyky
xnk
Translated Amino Acid sequence (All Frames) 
Frame A:
efsnfnk*minrsn*idliykvedgltsgkfkk*pftdglavfvaril*myvqytsgifi
ptlsklsqlppvfikltsfknk*vpsk*yclplpcltasadvvfvivyvy*le*syslvi
vkvvpvgygiakkiyspnai*avhilk*fgvpivk*ayqpifetpvipgflvnnvflssf
iplpnkliepmyesgscsssrsikpgtqnsilarplvplvqt*qfqselneqvlsncqnf
s*dpirvgtflpvklpsqsmklknlllpvlltgil*pmncevavf*iviffdtdipcgrn
selcvilmmtllssslddaf*yfikflkmillmmv*t*vs*nwkpclvystladkilpe*
pltiafdnhaspnneaglles*LSKLTASVLSPHIDKPL---

---xxxxrnciit**cltqfkikreyiiyvgs*cw*wyl*n*pitiw*igfikinrk*ic
ntiwsi*ntffielis*sks*iafikiki*ywcyt*k*w*tw*t**chcwspc*ccwt*i
cwcscwcscwcscwsycwcrcwcccwcscwcscwsscwsscwsscwsscwsscwsscwcs
cwcgcwsgcwsgcwsstsdcdsisidx*frrstfitttssi*tihfnitsfidf*titin
xlin

Frame B:
nlvilink**idriklilfiklkmv*hlvnlksnhlqmv*qyl*heyckcmsnihlesly
qlyrnfpnfhqys*n*rvlkineyhqssivchylv*lqvqmlsl**cmyid*nnhthl*l
*klyqldmv*lkkyihqmqfelsislnnlvyql*nkhtnpylkhq*yqdf*limfffhhl
yhyqin*lnqcmnlglvqvhvp*nlvpkiqy*qdl*yl*ykhnnsnln*mnkyyriakis
heiqlglehfyllnyhpnr*n*riyyyqyy*qeyydr*ivr*qcfel*ysliliylvegi
lnyvsy***lyyllhwmmhfdtl*nf*r*yy**wserkyhkignlv*cirhlliryypsd
h*rlhlitmlhqimkqvf*shdspn*lpqffhptlinly---

---xxxeeivlsldna*pnlklkent*ftlalnagdgifeinqllsge*vslklienefa
ipfgpseilfslnlyldlnlklllsklksnigvtlendgelgelddaivglhvdvvghes
vgvvvgvvvgvvvgvivgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvvvgvv
vgvvvgvvvgvvvgvvpvivtplalixnleevxslxlpvvfkpstlisqassifklll*i
x**t

Frame C:
i**f**indk*ieln*syl*s*rwsniw*i*kvtiyrwfssicstnivnvcpiyiwnlyt
nsietfptstsihkidef*k*mstikvvlfaitlfnckcrcclcnsvciliriiiltcnc
ksctswiwys*kniftkcnlscpyp*iiwctnceisipthi*ntsntriss**cfsfiiy
tttk*tn*tnv*iwvlfkftfhktwypkfnisktfstfstnitipi*ie*tsiielpkfl
mrsn*gwniftc*ttipideikestttstidrnimtdel*gssvlncdil*y*ytlwkef
*tmchtnddsiiffig*cililykiskdditndglnvsiikletlssvfdtc**ditrvt
iddci**pcftk**srssrvmtlqidclssftph**ts---

---XXXKKLYYHLIMLDPI*n*krihnlrwllmlvmvslkltnyylvnrfh*n**kmnlq
yhlvhlkyffh*tyili*ilncfyqn*nlilvlhlkmmvnlvnlmmpllvsmlmlldmnl
lv*llv*llv*llelllvsllvlllv*llv*lle*lle*lle*lle*lle*lle*llv*l
lvwllewllewlle*yq*l*lh*h**xi*kkyxhyxyq*ylnhpl*yhklhrflnyyyky
xnk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12079-1 (Contig-U12079-1Q)
/CSM_Contig/Contig-U12079-1Q.Seq.d
         (1932 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Conti...  2333  0.0
Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U12069-1 (Contig-U12069-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U09399-1 (Contig-U09399-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U12354-1 (Contig-U12354-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11471-1 (Contig-U11471-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U09228-1 (Contig-U09228-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U06229-1 (Contig-U06229-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Contig-U12079-1Q.Seq.d
          Length = 1932

 Score = 2333 bits (1177), Expect = 0.0
 Identities = 1191/1198 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    gaatttagtaattttaataaataaatgataaatagatcgaattaaattgatcttatttat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gaatttagtaattttaataaataaatgataaatagatcgaattaaattgatcttatttat 60

                                                                        
Query: 61   aaagttgaagatggtctaacatctggtaaatttaaaaagtaaccatttacagatggttta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aaagttgaagatggtctaacatctggtaaatttaaaaagtaaccatttacagatggttta 120

                                                                        
Query: 121  gcagtatttgtagcacgaatattgtaaatgtatgtccaatatacatctggaatctttata 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gcagtatttgtagcacgaatattgtaaatgtatgtccaatatacatctggaatctttata 180

                                                                        
Query: 181  ccaactctatcgaaactttcccaacttccaccagtattcataaaattgacgagttttaaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ccaactctatcgaaactttcccaacttccaccagtattcataaaattgacgagttttaaa 240

                                                                        
Query: 241  aataaatgagtaccatcaaagtagtattgtttgccattaccttgtttaactgcaagtgca 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aataaatgagtaccatcaaagtagtattgtttgccattaccttgtttaactgcaagtgca 300

                                                                        
Query: 301  gatgttgtctttgtaatagtgtatgtatattgattagaataatcatactcacttgtaatt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gatgttgtctttgtaatagtgtatgtatattgattagaataatcatactcacttgtaatt 360

                                                                        
Query: 361  gtaaaagttgtaccagttggatatggtatagctnnnnnnntatattcaccaaatgcaatt 420
            |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 361  gtaaaagttgtaccagttggatatggtatagctaaaaaaatatattcaccaaatgcaatt 420

                                                                        
Query: 421  tgagctgtccatatccttaaataatttggtgtaccaattgtgaaataagcataccaaccc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tgagctgtccatatccttaaataatttggtgtaccaattgtgaaataagcataccaaccc 480

                                                                        
Query: 481  atatttgaaacaccagtaataccaggatttctagttaataatgtttttctttcatcattt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atatttgaaacaccagtaataccaggatttctagttaataatgtttttctttcatcattt 540

                                                                        
Query: 541  ataccactaccaaataaactaattgaaccaatgtatgaatctgggtcttgttcaagttca 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ataccactaccaaataaactaattgaaccaatgtatgaatctgggtcttgttcaagttca 600

                                                                        
Query: 601  cgttccataaaacctggtacccaaaattcaatattagcaagacctttagtacctttagta 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  cgttccataaaacctggtacccaaaattcaatattagcaagacctttagtacctttagta 660

                                                                        
Query: 661  caaacataacaattccaatctgaattgaatgaacaagtattatcgaattgccaaaatttc 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  caaacataacaattccaatctgaattgaatgaacaagtattatcgaattgccaaaatttc 720

                                                                        
Query: 721  tcatgagatccaattagggttggaacatttttacctgttaaactaccatcccaatcgatg 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tcatgagatccaattagggttggaacatttttacctgttaaactaccatcccaatcgatg 780

                                                                        
Query: 781  aaattaaagaatctactactaccagtactattgacaggaatattatgaccgatgaattgt 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  aaattaaagaatctactactaccagtactattgacaggaatattatgaccgatgaattgt 840

                                                                        
Query: 841  gaggtagcagtgttttgaattgtgatattctttgatactgatataccttgtggaaggaat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gaggtagcagtgttttgaattgtgatattctttgatactgatataccttgtggaaggaat 900

                                                                        
Query: 901  tctgaactatgtgtcatactaatgatgactctattatcttcttcattggatgatgcattt 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tctgaactatgtgtcatactaatgatgactctattatcttcttcattggatgatgcattt 960

                                                                        
Query: 961  tgatactttataaaatttctaaagatgatattactaatgatggtctgaacgtaagtatca 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tgatactttataaaatttctaaagatgatattactaatgatggtctgaacgtaagtatca 1020

                                                                        
Query: 1021 taaaattggaaaccttgtctagtgtattcgacacttgctgataagatattacccgagtga 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 taaaattggaaaccttgtctagtgtattcgacacttgctgataagatattacccgagtga 1080

                                                                        
Query: 1081 ccattgacgattgcatttgataaccatgcttcaccaaataatgaagcaggtcttctagag 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ccattgacgattgcatttgataaccatgcttcaccaaataatgaagcaggtcttctagag 1140

                                                                      
Query: 1141 tcatgactctccaaattgactgcctcagttctttcaccccacattgataaacctctat 1198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcatgactctccaaattgactgcctcagttctttcaccccacattgataaacctctat 1198


 Score =  676 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1219 gaagaaattgtattatcacttgataatgcttgacccaatttaaaattaaaagagaataca 1278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 gaagaaattgtattatcacttgataatgcttgacccaatttaaaattaaaagagaataca 1278

                                                                        
Query: 1279 taatttacgttggctcttaatgctggtgatggtatctttgaaattaaccaattactatct 1338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 taatttacgttggctcttaatgctggtgatggtatctttgaaattaaccaattactatct 1338

                                                                        
Query: 1339 ggtgaataggtttcattaaaattaatagaaaatgaatttgcaataccatttggtccatct 1398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 ggtgaataggtttcattaaaattaatagaaaatgaatttgcaataccatttggtccatct 1398

                                                                        
Query: 1399 gaaatacttttttcattgaacttatatcttgatctaaatcttaaattgcttttatcaaaa 1458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 gaaatacttttttcattgaacttatatcttgatctaaatcttaaattgcttttatcaaaa 1458

                                                                        
Query: 1459 ttaaaatctaatattggtgttacacttgaaaatgatggtgaacttggtgaacttgatgat 1518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 ttaaaatctaatattggtgttacacttgaaaatgatggtgaacttggtgaacttgatgat 1518

                                                     
Query: 1519 gccattgttggtctccatgttgatgttgttggacatgaatc 1559
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 gccattgttggtctccatgttgatgttgttggacatgaatc 1559


 Score =  289 bits (146), Expect = 6e-78
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1775 ttgttggagtagtaccagtgattgtgactccattagcattgataantaatttagaagaag 1834
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 ttgttggagtagtaccagtgattgtgactccattagcattgataantaatttagaagaag 1834

                                                                        
Query: 1835 tacnttcattacnactaccagtagtatttaaaccatccactttaatatcacaagcttcat 1894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 tacnttcattacnactaccagtagtatttaaaccatccactttaatatcacaagcttcat 1894

                                                  
Query: 1895 cgatttttaaactattactataaatatnctaataaacc 1932
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1895 cgatttttaaactattactataaatatnctaataaacc 1932


>Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Contig-U11764-1Q.Seq.d
          Length = 1920

 Score = 40.1 bits (20), Expect = 0.009
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1490 atgatggtgaacttggtgaa 1509
            ||||||||||||||||||||
Sbjct: 1715 atgatggtgaacttggtgaa 1696


 Score = 34.2 bits (17), Expect = 0.54
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                     
Query: 1485 tgaaaatgatggtgaacttggtgaa 1509
            |||| ||||||| ||||||||||||
Sbjct: 1699 tgaatatgatggcgaacttggtgaa 1675


>Contig-U12722-1 (Contig-U12722-1Q) /CSM_Contig/Contig-U12722-1Q.Seq.d
          Length = 976

 Score = 38.2 bits (19), Expect = 0.035
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 794 tactactaccagtactatt 812
           |||||||||||||||||||
Sbjct: 125 tactactaccagtactatt 107


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,459
Number of Sequences: 6905
Number of extensions: 27459
Number of successful extensions: 2912
Number of sequences better than 10.0: 321
length of query: 1932
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1916
effective length of database: 5,564,391
effective search space: 10661373156
effective search space used: 10661373156
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Contig-U12079-1Q.Seq.d
         (1932 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ394307) Dictyostelium discoideum cDNA clone:dds34i16, 5' ...  1090   0.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   779   0.0    14
(BJ441920) Dictyostelium discoideum cDNA clone:ddv48c09, 3' ...   779   0.0    2
(BJ442521) Dictyostelium discoideum cDNA clone:ddv50k05, 3' ...   733   0.0    3
(BJ406237) Dictyostelium discoideum cDNA clone:dds34i16, 3' ...   626   0.0    2
(C24367) Dictyostelium discoideum gamete cDNA, clone FC-AR02.      64   2e-14  2
(BJ445831) Dictyostelium discoideum cDNA clone:ddv60d22, 3' ...    62   1e-10  3
(BJ444895) Dictyostelium discoideum cDNA clone:ddv57c24, 3' ...    62   6e-08  2
(BJ442632) Dictyostelium discoideum cDNA clone:ddv50b16, 3' ...    62   6e-08  2
(BJ441410) Dictyostelium discoideum cDNA clone:ddv46j15, 3' ...    52   9e-08  3
(BJ444060) Dictyostelium discoideum cDNA clone:ddv55h03, 3' ...    56   3e-06  2
(U39883) Schistosoma mansoni Y-box binding protein mRNA, com...    56   0.005  1
(AI976081) EST270675 Schistosoma mansoni female, Phil LoVerd...    56   0.005  1
(CD075643) MA3-0001U-M329-E06-U.G MA3-0001 Schistosoma manso...    56   0.005  1
(AI395315) MA002892.C8F Soares normalized S8W Schistosoma ma...    56   0.005  1
(AI019013) SMEST0653 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI019000) SMEST0640 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018998) SMEST0638 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018989) SMEST0629 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018985) SMEST0625 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018980) SMEST0620 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018976) SMEST0616 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018974) SMEST0614 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AI018968) SMEST0608 Schistosoma mansoni, adult worm, Gloria...    56   0.005  1
(AA999472) MCCE3344.M1F Schistosoma mansoni, cercariae Schis...    56   0.005  1
(AA999439) MCCE3296.M1F Schistosoma mansoni, cercariae Schis...    56   0.005  1
(AA999368) MCCE3208.M1F Schistosoma mansoni, cercariae Schis...    56   0.005  1
(T14376) SMEST0037 Schistosoma mansoni, adult worm, Gloria F...    56   0.005  1
(T14342) SMEST0003 Schistosoma mansoni, adult worm, Gloria F...    56   0.005  1
(BJ439958) Dictyostelium discoideum cDNA clone:ddv42n05, 3' ...    38   0.043  4
(BJ443486) Dictyostelium discoideum cDNA clone:ddv53f06, 3' ...    38   0.043  4
(BJ440168) Dictyostelium discoideum cDNA clone:ddv42i20, 3' ...    38   0.045  4
(BJ442452) Dictyostelium discoideum cDNA clone:ddv49m20, 3' ...    38   0.047  4
(AX344565) Sequence 16 from Patent WO0200932.                      36   0.29   14
(CN776823) taf26f11.x1 Hydra EST Darmstadt I Hydra magnipapi...    50   0.32   1
(CN770746) taf26f11.y1 Hydra EST Darmstadt I Hydra magnipapi...    50   0.32   1
(CN769238) taf30d03.x1 Hydra EST Darmstadt I Hydra magnipapi...    50   0.32   1
(CN627753) tae88b09.x1 Hydra EST Darmstadt I Hydra magnipapi...    50   0.32   1
(CN626068) tae54d12.y1 Hydra EST Darmstadt I Hydra magnipapi...    50   0.32   1
(CN560555) tag32e01.y1 Hydra EST -Kiel 2 Hydra magnipapillat...    50   0.32   1
(CN560379) tag32e01.x1 Hydra EST -Kiel 2 Hydra magnipapillat...    50   0.32   1
(CN559721) tag30f05.y1 Hydra EST -Kiel 2 Hydra magnipapillat...    50   0.32   1
(CN559567) tag30f05.x1 Hydra EST -Kiel 2 Hydra magnipapillat...    50   0.32   1
(CN559085) tad79e10.y1 Hydra EST Darmstadt I Hydra magnipapi...    50   0.32   1
(CD498097) CDA31-F07.x1d-t SHGC-CDA Gasterosteus aculeatus c...    50   0.32   1
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.59   18
(AM462588) Vitis vinifera contig VV78X212483.5, whole genome...    34   0.75   2
(AC173898) Bos taurus clone CH240-242H17, WORKING DRAFT SEQU...    38   1.0    7
(BJ383882) Dictyostelium discoideum cDNA clone:ddc47f13, 3' ...    38   1.1    3
(AL358072) Human DNA sequence from clone RP11-188D8 on chrom...    44   1.1    8
(BJ440867) Dictyostelium discoideum cDNA clone:ddv45a01, 3' ...    38   1.1    3
(AC144502) Medicago truncatula clone mth2-5p10, complete seq...    48   1.3    1
(AC093976) Rattus norvegicus clone CH230-59P13, WORKING DRAF...    48   1.3    1
(AC202475) Medicago truncatula clone mth2-154n19, WORKING DR...    48   1.3    1
(AC202319) Medicago truncatula clone mth2-151a7, WORKING DRA...    48   1.3    1
(AC184556) Strongylocentrotus purpuratus clone R3-7B10, WORK...    48   1.3    1
(AC180750) Strongylocentrotus purpuratus clone R3-3083F12, W...    48   1.3    1
(AC180204) Strongylocentrotus purpuratus clone R3-3E15, WORK...    48   1.3    1
(AC180118) Strongylocentrotus purpuratus clone R3-4007K2, WO...    48   1.3    1
(AC176513) Strongylocentrotus purpuratus clone R3-3073A17, W...    48   1.3    1
(CG960879) MBEEW21TFB mth2 Medicago truncatula genomic clone...    48   1.3    1
(DT233785) JGI_CAAT7812.rev CAAT Pimephales promelas brain 7...    48   1.3    1
(CN776975) taf28e11.x1 Hydra EST Darmstadt I Hydra magnipapi...    48   1.3    1
(R95610) SMNHADA017062SK SmAW Schistosoma mansoni cDNA 5', m...    48   1.3    1
(AB371031) Lasius flavus mitochondrial gene for 16S ribosoma...    36   1.4    2
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    36   1.5    6
(BH977879) ode14c10.g1 B.oleracea002 Brassica oleracea genom...    40   1.8    2
(AC157249) Dasypus novemcinctus clone VMRC5-110M7, WORKING D...    40   2.8    4
(DU103081) JBnY035P06R Brassica napus BAC library JBnY Brass...    32   3.4    2
(AX392736) Sequence 26 from Patent WO0212526.                      36   3.6    5
(AR707083) Sequence 26 from patent US 6933145.                     36   3.6    5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    40   3.7    9
(EV846877) FMMC845TF Tetrahymena thermophila SB210 cDNA libr...    44   3.8    2
(DN291334) PL030006B20G10 cDNA from sexually mature hermapho...    44   4.9    2
(CT583687) Zebrafish DNA sequence from clone CH211-256E16 in...    46   5.0    1
(BV582819) G591P620452RD8.T0 Clint Pan troglodytes verus STS...    46   5.0    1
(BV582232) G591P621640FA2.T0 Clint Pan troglodytes verus STS...    46   5.0    1
(AM430422) Vitis vinifera contig VV78X049969.4, whole genome...    46   5.0    1
(AM429926) Vitis vinifera contig VV78X162021.9, whole genome...    46   5.0    1
(AM427880) Vitis vinifera contig VV78X263770.4, whole genome...    46   5.0    1
(Z84468) Human DNA sequence from clone CTA-299D3 on chromoso...    46   5.0    1
(AC002507) Human Cosmid g5129z132 from 7q31.3, complete sequ...    46   5.0    1
(AC160275) Bos taurus clone CH240-81P19, WORKING DRAFT SEQUE...    46   5.0    1
(AC135764) Homo sapiens clone RP13-833C7, *** SEQUENCING IN ...    46   5.0    1
(AC132981) Rattus norvegicus clone CH230-267C24, WORKING DRA...    46   5.0    1
(AC090742) Homo sapiens chromosome 11 clone RP11-258D21 map ...    46   5.0    1
(AC069358) Homo sapiens clone RP11-21J20, WORKING DRAFT SEQU...    46   5.0    1
(AC222844) Bos taurus clone CH240-436P7, WORKING DRAFT SEQUE...    46   5.0    1
(AC217040) Pan troglodytes clone ptb-83f17, WORKING DRAFT SE...    46   5.0    1
(AC197516) Pan troglodytes chromosome 22 clone CH251-385H5, ...    46   5.0    1
(AC190575) Zea mays chromosome 10 clone CH201-27M7; ZMMBBc00...    46   5.0    1
(ET030479) MUGQ_CH252P330P11T7_CP620_034 CHORI-252 Vervet Mo...    46   5.0    1
(ER925044) MUGQ_CH252P284N19Sp6_CP417_068 CHORI-252 Vervet M...    46   5.0    1
(EK090104) 1092961208094 Global-Ocean-Sampling_GS-31-01-01-1...    46   5.0    1
(B18085) A-299D3.TP CIT978SK Homo sapiens genomic clone A-29...    46   5.0    1
(EE105626) SCB01165 Inflorescence with GA3 (VvS12) Vitis vin...    46   5.0    1
(EE104572) SBB07162 Inflorescence (VvS11) Vitis vinifera cDN...    46   5.0    1
(EE101413) S9B09244 Ripening Berries (VvS9) Vitis vinifera c...    46   5.0    1
(EE082527) S4B04870 Fruits 2-3 mm (VvS4) Vitis vinifera cDNA...    46   5.0    1
(EE080990) S2B25531 Buds (VvS2) Vitis vinifera cDNA clone S2...    46   5.0    1

>(BJ394307) Dictyostelium discoideum cDNA clone:dds34i16, 5' end,
            single read.
          Length = 613

 Score = 1090 bits (550), Expect(2) = 0.0
 Identities = 550/550 (100%)
 Strand = Plus / Plus


Query: 649  gtacctttagtacaaacataacaattccaatctgaattgaatgaacaagtattatcgaat 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64   gtacctttagtacaaacataacaattccaatctgaattgaatgaacaagtattatcgaat 123


Query: 709  tgccaaaatttctcatgagatccaattagggttggaacatttttacctgttaaactacca 768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124  tgccaaaatttctcatgagatccaattagggttggaacatttttacctgttaaactacca 183


Query: 769  tcccaatcgatgaaattaaagaatctactactaccagtactattgacaggaatattatga 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184  tcccaatcgatgaaattaaagaatctactactaccagtactattgacaggaatattatga 243


Query: 829  ccgatgaattgtgaggtagcagtgttttgaattgtgatattctttgatactgatatacct 888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244  ccgatgaattgtgaggtagcagtgttttgaattgtgatattctttgatactgatatacct 303


Query: 889  tgtggaaggaattctgaactatgtgtcatactaatgatgactctattatcttcttcattg 948
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304  tgtggaaggaattctgaactatgtgtcatactaatgatgactctattatcttcttcattg 363


Query: 949  gatgatgcattttgatactttataaaatttctaaagatgatattactaatgatggtctga 1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364  gatgatgcattttgatactttataaaatttctaaagatgatattactaatgatggtctga 423


Query: 1009 acgtaagtatcataaaattggaaaccttgtctagtgtattcgacacttgctgataagata 1068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  acgtaagtatcataaaattggaaaccttgtctagtgtattcgacacttgctgataagata 483


Query: 1069 ttacccgagtgaccattgacgattgcatttgataaccatgcttcaccaaataatgaagca 1128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  ttacccgagtgaccattgacgattgcatttgataaccatgcttcaccaaataatgaagca 543


Query: 1129 ggtcttctagagtcatgactctccaaattgactgcctcagttctttcaccccacattgat 1188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  ggtcttctagagtcatgactctccaaattgactgcctcagttctttcaccccacattgat 603


Query: 1189 aaacctctat 1198
            ||||||||||
Sbjct: 604  aaacctctat 613

 Score = 30.2 bits (15), Expect(2) = 0.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus


Query: 610 aaacctggtacccaaaatt 628
           |||||||||||||| ||||
Sbjct: 25  aaacctggtacccagaatt 43

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,949,782,380
Number of extensions: 123270033
Number of successful extensions: 9940534
Number of sequences better than 10.0: 175
Length of query: 1932
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1908
Effective length of database: 97,308,875,965
Effective search space: 185665335341220
Effective search space used: 185665335341220
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Contig-U12079-1Q.Seq.d
         (1932 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromos...   619   e-175
CP001576_63(CP001576|pid:none) Micromonas sp. RCC299 chromosome ...    50   4e-04
AB103331_1(AB103331|pid:none) Mus musculus mRNA for KIAA1199 pro...    42   0.062
(Q8BI06) RecName: Full=Protein KIAA1199 homolog; AltName: Full=P...    42   0.062
A71661(A71661) hypothetical protein RP563 - Rickettsia prowazeki...    39   0.89
AB033025_1(AB033025|pid:none) Homo sapiens mRNA for KIAA1199 pro...    38   1.2
AL359061_1(AL359061|pid:none) Homo sapiens mRNA full length inse...    38   1.2
AY007815_1(AY007815|pid:none) Mus musculus KIAA1199-related prot...    37   2.6
CP000300_1519(CP000300|pid:none) Methanococcoides burtonii DSM 6...    37   2.6
BC056981_1(BC056981|pid:none) Mus musculus RIKEN cDNA 9930013L23...    37   2.6
BX323451_1(BX323451|pid:none) Zebrafish DNA sequence from clone ...    37   2.6
CP000806_1532(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    37   3.4
AK028625_1(AK028625|pid:none) Mus musculus 10 days neonate skin ...    35   7.5
AM746676_6583(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    35   7.5
BC140773_1(BC140773|pid:none) Homo sapiens transmembrane protein...    35   9.8
(Q9UHN6) RecName: Full=Transmembrane protein 2;  &AB384202_1(AB3...    35   9.8

>AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromosome 2
            map 2567470-3108875 strain AX4, complete sequence.
          Length = 1096

 Score =  619 bits (1596), Expect = e-175
 Identities = 301/383 (78%), Positives = 324/383 (84%), Gaps = 5/383 (1%)
 Frame = -2

Query: 1193 GLSMWGERTEAVNLESHDSRRPASLFGEAWLSNAIVNGHSGNILSASVEYTRQGFQFYDT 1014
            G+  WGE  E V  ESHD+ RP SLFG  WL NA+VNG SGNIL+ + E TRQGF+FYD
Sbjct: 715  GVGYWGENIEIVGYESHDNTRPVSLFGNVWLHNALVNGQSGNILTKNSETTRQGFRFYDF 774

Query: 1013 YVQTIISNIIFRNFIKYQNASSNEEDNRVIISMTHSSEFLPQGISVSKNITIQNTATSQF 834
            YVQTIISN IFRNFI    A+  +EDN VI + T S  F PQ IS +KNIT QN   SQ
Sbjct: 775  YVQTIISNTIFRNFIHSTAATKRDEDNVVITATTFSDVFKPQFISATKNITFQNVPQSQI 834

Query: 833  IGHNIPVNSTGSSRFFNFIDWDGSLTGK-----NVPTLIGSHEKFWQFDNTCSFNSDWNC 669
            IGH    NS GSSR FNF+D DGS+T        +P ++GSH  +W+FD++C F+++WN
Sbjct: 835  IGHEDVANS-GSSRLFNFLDGDGSVTSSFTGKPGIPQIVGSHVSWWKFDDSCLFSTEWNV 893

Query: 668  YVCTKGTKGLANIEFWVPGFMERELEQDPDSYIGSISLFGSGINDERKTLLTRNPGITGV 489
            +VC KGTKGLANIEFWVPGFMERELEQDPDSYIGSISLFGSGINDERKTLLTRNPGITGV
Sbjct: 894  WVCNKGTKGLANIEFWVPGFMERELEQDPDSYIGSISLFGSGINDERKTLLTRNPGITGV 953

Query: 488  SNMGWYAYFTIGTPNYLRIWTAQIAFGEYIFLAIPYPTGTTFTITSEYDYSNQYTYTITK 309
            SNMGWYAYFTIGTPNYLRIWTAQIAFGEYIFLAIPYPTGTTFTITSEYDYSNQYTYTITK
Sbjct: 954  SNMGWYAYFTIGTPNYLRIWTAQIAFGEYIFLAIPYPTGTTFTITSEYDYSNQYTYTITK 1013

Query: 308  TTSALAVKQGNGKQYYFDGTHLFLKLVNFMNTGGSWESFDRVGIKIPDVYWTYIYNIRAT 129
            TTSALAVKQGNGKQYYFDGTHLFLKLVNFMNTGGSWESFDRVGIKIPDVYWTYIYNIRAT
Sbjct: 1014 TTSALAVKQGNGKQYYFDGTHLFLKLVNFMNTGGSWESFDRVGIKIPDVYWTYIYNIRAT 1073

Query: 128  NTAKPSVNGYFLNLPDVRPSSTL 60
            NTAKPSVNGYFLNLPDVRPSSTL
Sbjct: 1074 NTAKPSVNGYFLNLPDVRPSSTL 1096

 Score = 47.4 bits (111), Expect = 0.002
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = -2

Query: 1481 VTPILDFNFDKSNLRFRSRYKFNEKSISDGPNGIANSFSINFNETYSPDSNWLISKIPSP 1302
            + P  D  FDKSNL F + +  +  SIS   N + ++ S  F+  Y
Sbjct: 44   IQPSTDIKFDKSNLEFVAEWDVSANSIS---NVVGSTDSSEFSLNYG------------- 87

Query: 1301 ALRANVNYVFSFNFKLGQALSSDNTISS 1218
               ANV+Y FSF+FKLG+AL   N   S
Sbjct: 88   ---ANVDYTFSFDFKLGKALGEYNNYQS 112

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,620,977,503
Number of extensions: 54212956
Number of successful extensions: 121927
Number of sequences better than 10.0: 16
Number of HSP's gapped: 121734
Number of HSP's successfully gapped: 17
Length of query: 644
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 509
Effective length of database: 614,245,399
Effective search space: 312650908091
Effective search space used: 312650908091
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.27  alm: 0.55  top: 0.60  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U12079-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0