Contig-U12073-1
Contig ID Contig-U12073-1
Contig update 2002.12.18
Contig sequence
>Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Contig-U12073-1Q.Seq.d
CTGTTGGCCTACTGGNAATTGAAACAATTGTTTCAGCAAATATTATAAGT
ATTAATATAAAAATAAAACAATAAAAAAACAATTATTTATTTTTATAAAA
AAAAAANNNNNNNNN----------ATAGAAAAGCAGATGGTCGTACACT
TCTTCAAGATTTTAGATCAAAAACAATCATTTATCTAGATAATAACTATG
TAAAGGATGAATTGTTATATCCAGCCTCTGAGTATATTAGATCAAAAGAA
TTTTTAAATGCTGCCTATCATCATGGTATTCATGTTTTAATGGTTGGTAA
AAATTTCTCAATCGAGAATGAAATCTTCCCAATTAATACATTTGAAAGAG
CAACTTTGGTTTATTATAAACAACATAAACAATTATTATACGCTTTAAAA
CATAGAATTCCTTCTGGCACTGGTTGTGGTCAAATTATACCACCACATAT
GGCTGTTGATGATAATGGTGATCTATCATTAAATCTATTAGTTGATAAAA
AGAATGAATATTTCATTGTAATCTTTAGACAATTAACCCTACTTTCAATC
TTTAAAAAATCAAATTCACTCTACCCAATTAAAACAATTCATTTAGATAG
TTTTAATTTAACTTGTTTAACTCAACCACATTCTGAAACTAATGAAATCA
TTACAATTAATTTAGAATTTCAACATTTAGGTTTTAAAATTAATTTTTCA
CCATCAAAAGATAAAAAACTTAAAAAAAATTCAATTTCAAAAATTCAACA
ATTTTTTGAAATTTTACAACAAATTAAAACTTTATCACCAATTAATAATA
ATAATAATAATAATAATATAAATATAAATGAAAATAATAATAATAATAAT
TTAAATGGTNTANATGTTTCAGGTGGTGGTGAAAGANNCAGTGTCGGTCC
ANTTTCANCAGACTATTGAAGA

Gap gap included
Contig length 912
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2118980
End point 2119867
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U12073
List of clone(s)

est1=SHE801F,1,106
est2=AHI635Z,107,681
est3=AHR414Z,211,901
est4=SHE801Z,293,904
est5=CHH638Z,627,768
Translated Amino Acid sequence
cwptgn*nncfskyyky*YKNKTIKKQLFIFIKKKXXX---

---RKADGRTLLQDFRSKTIIYLDNNYVKDELLYPASEYIRSKEFLNAAYHHGIHVLMVG
KNFSIENEIFPINTFERATLVYYKQHKQLLYALKHRIPSGTGCGQIIPPHMAVDDNGDLS
LNLLVDKKNEYFIVIFRQLTLLSIFKKSNSLYPIKTIHLDSFNLTCLTQPHSETNEIITI
NLEFQHLGFKINFSPSKDKKLKKNSISKIQQFFEILQQIKTLSPINNNNNNNNININENN
NNNNLNGXXVSGGGERXSVGPXSXDY*r


Translated Amino Acid sequence (All Frames)
Frame A:
llaywxlkqlfqqil*vli*k*nnkktiiyfykkkxxx---

---iekqmvvhffkildqkqsfi*iitm*rmncyiqplsildqknf*mlpiimvfmf*wl
vkisqsrmkssqlihlkeqlwfiinninnyytl*niefllalvvvklyhhiwllmimviy
h*iy*likrmnisl*sldn*pyfqslknqihstqlkqfi*ivli*lv*lnhilklmkslq
li*nfni*vlklifhhqkiknlkkiqfqkfnnflkfynklklyhqliiiiiiii*i*mki
iiiii*mvxmfqvvvkxxvsvxfxqtie

Frame B:
cwptgn*nncfskyyky*YKNKTIKKQLFIFIKKKXXX---

---*ksrwsytssrf*iknnhlsr**lckg*ivissl*vy*ikrifkcclsswyscfngw
*kflnre*nlpn*yi*ksnfgll*tt*tiiirfkt*nsfwhwlwsnytttygc***w*si
iksis**ke*ifhcnl*tinptfnl*kikftlpn*nnsfr*f*fnlfnsttf*n**nhyn
*fristfrf*n*fftikr*kt*kkfnfknstif*nfttn*nfitn********ykyk*k*
****fkwxxcfrww*kxqcrsxfxrllk

Frame C:
vgllxietivsaniisinikikq*knnylfl*kkxxx---

---RKADGRTLLQDFRSKTIIYLDNNYVKDELLYPASEYIRSKEFLNAAYHHGIHVLMVG
KNFSIENEIFPINTFERATLVYYKQHKQLLYALKHRIPSGTGCGQIIPPHMAVDDNGDLS
LNLLVDKKNEYFIVIFRQLTLLSIFKKSNSLYPIKTIHLDSFNLTCLTQPHSETNEIITI
NLEFQHLGFKINFSPSKDKKLKKNSISKIQQFFEILQQIKTLSPINNNNNNNNININENN
NNNNLNGXXVSGGGERXSVGPXSXDY*r

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12073-1 (Contig-U12073-1Q)
/CSM_Contig/Contig-U12073-1Q.Seq.d
(922 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Conti... 1164 0.0
Contig-U14413-1 (Contig-U14413-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U13139-1 (Contig-U13139-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U09371-1 (Contig-U09371-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U09092-1 (Contig-U09092-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U05502-1 (Contig-U05502-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U14863-1 (Contig-U14863-1Q) /CSM_Contig/Conti... 36 0.065
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti... 36 0.065
Contig-U09059-1 (Contig-U09059-1Q) /CSM_Contig/Conti... 36 0.065
Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Conti... 36 0.065

>Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Contig-U12073-1Q.Seq.d
Length = 922

Score = 1164 bits (587), Expect = 0.0
Identities = 587/587 (100%)
Strand = Plus / Plus


Query: 126 atagaaaagcagatggtcgtacacttcttcaagattttagatcaaaaacaatcatttatc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 atagaaaagcagatggtcgtacacttcttcaagattttagatcaaaaacaatcatttatc 185


Query: 186 tagataataactatgtaaaggatgaattgttatatccagcctctgagtatattagatcaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tagataataactatgtaaaggatgaattgttatatccagcctctgagtatattagatcaa 245


Query: 246 aagaatttttaaatgctgcctatcatcatggtattcatgttttaatggttggtaaaaatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagaatttttaaatgctgcctatcatcatggtattcatgttttaatggttggtaaaaatt 305


Query: 306 tctcaatcgagaatgaaatcttcccaattaatacatttgaaagagcaactttggtttatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctcaatcgagaatgaaatcttcccaattaatacatttgaaagagcaactttggtttatt 365


Query: 366 ataaacaacataaacaattattatacgctttaaaacatagaattccttctggcactggtt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ataaacaacataaacaattattatacgctttaaaacatagaattccttctggcactggtt 425


Query: 426 gtggtcaaattataccaccacatatggctgttgatgataatggtgatctatcattaaatc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtggtcaaattataccaccacatatggctgttgatgataatggtgatctatcattaaatc 485


Query: 486 tattagttgataaaaagaatgaatatttcattgtaatctttagacaattaaccctacttt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tattagttgataaaaagaatgaatatttcattgtaatctttagacaattaaccctacttt 545


Query: 546 caatctttaaaaaatcaaattcactctacccaattaaaacaattcatttagatagtttta 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caatctttaaaaaatcaaattcactctacccaattaaaacaattcatttagatagtttta 605


Query: 606 atttaacttgtttaactcaaccacattctgaaactaatgaaatcattacaattaatttag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atttaacttgtttaactcaaccacattctgaaactaatgaaatcattacaattaatttag 665


Query: 666 aatttcaacatttaggttttaaaattaatttttcaccatcaaaagat 712
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aatttcaacatttaggttttaaaattaatttttcaccatcaaaagat 712


Score = 125 bits (63), Expect = 9e-29
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 730 ttcaatttcaaaaattcaacaattttttgaaattttacaacaaattaaaactttatcacc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttcaatttcaaaaattcaacaattttttgaaattttacaacaaattaaaactttatcacc 789


Query: 790 aat 792
|||
Sbjct: 790 aat 792


Score = 107 bits (54), Expect = 2e-23
Identities = 72/72 (100%)
Strand = Plus / Plus


Query: 851 ttaaatggtntanatgtttcaggtggtggtgaaaganncagtgtcggtccantttcanca 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ttaaatggtntanatgtttcaggtggtggtgaaaganncagtgtcggtccantttcanca 910


Query: 911 gactattgaaga 922
||||||||||||
Sbjct: 911 gactattgaaga 922


Score = 105 bits (53), Expect = 8e-23
Identities = 56/56 (100%)
Strand = Plus / Plus


Query: 1 ctgttggcctactggnaattgaaacaattgtttcagcaaatattataagtattaat 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgttggcctactggnaattgaaacaattgtttcagcaaatattataagtattaat 56


Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 80 caattatttatttttat 96
|||||||||||||||||
Sbjct: 80 caattatttatttttat 96


Score = 32.2 bits (16), Expect = 1.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 20 tgaaacaattgtttca 35
||||||||||||||||
Sbjct: 35 tgaaacaattgtttca 20


>Contig-U14413-1 (Contig-U14413-1Q) /CSM_Contig/Contig-U14413-1Q.Seq.d
Length = 286

Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 645 aaatcattacaattaattt 663
|||||||||||||||||||
Sbjct: 38 aaatcattacaattaattt 56


>Contig-U13139-1 (Contig-U13139-1Q) /CSM_Contig/Contig-U13139-1Q.Seq.d
Length = 374

Score = 38.2 bits (19), Expect = 0.016
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 752 ttttttgaaattttacaacaaat 774
|||||| ||||||||||||||||
Sbjct: 44 ttttttaaaattttacaacaaat 22


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,017
Number of Sequences: 6905
Number of extensions: 20017
Number of successful extensions: 2797
Number of sequences better than 10.0: 657
length of query: 922
length of database: 5,674,871
effective HSP length: 16
effective length of query: 906
effective length of database: 5,564,391
effective search space: 5041338246
effective search space used: 5041338246
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Contig-U12073-1Q.Seq.d
(922 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 1150 0.0 1
(BJ352901) Dictyostelium discoideum cDNA clone:dda48e10, 3' ... 1140 0.0 1
(BJ357921) Dictyostelium discoideum cDNA clone:dda65l04, 3' ... 944 0.0 1
(BJ405786) Dictyostelium discoideum cDNA clone:dds33b02, 3' ... 781 0.0 2
(BJ380207) Dictyostelium discoideum cDNA clone:ddc37k10, 3' ... 113 1e-20 1
(BJ393888) Dictyostelium discoideum cDNA clone:dds33b02, 5' ... 68 6e-07 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 6e-05 20
(EJ091955) 1095460200961 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.59 1
(AC115740) Mus musculus chromosome 3, clone RP23-476G18, com... 34 1.0 7
(AC175833) Pan troglodytes BAC clone CH251-679G1 from chromo... 40 1.5 7
(BV615196) S217P62216FC10.T0 Noemie Pan troglodytes troglody... 42 1.7 2
(AL762209) Arabidopsis thaliana T-DNA flanking sequence GK-0... 36 1.7 2
(BX649289) Zebrafish DNA sequence from clone DKEY-231H5 in l... 46 2.3 1
(CT010456) Mouse DNA sequence from clone RP23-96D14 on chrom... 46 2.3 1
(AM433710) Vitis vinifera contig VV78X205934.12, whole genom... 46 2.3 1
(AC083856) Mus musculus strain C57BL6/J chromosome 12 clone ... 46 2.3 1
(ER530227) 1093015742857 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.3 1
(EJ718179) 1092959435973 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1
(EJ696462) 1092956019857 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1
(FE660311) UAHAUST_01A_R_G09 UaHaust_ARS Uromyces appendicul... 46 2.3 1
(FE660262) UAHAUST_01A_F_G09 UaHaust_ARS Uromyces appendicul... 46 2.3 1
(FC760809) CBBN12295.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 46 2.3 1
(CP000439) Francisella tularensis subsp. novicida U112, comp... 46 2.3 1
(Z33362) M.capricolum DNA for CONTIG MCAAZ. 40 2.8 2
(AC179010) Strongylocentrotus purpuratus clone R3-32H16, WOR... 38 2.8 5
(CU633954) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.7 4
(AL031629) Caenorhabditis elegans YAC Y106G6D. 34 4.0 3
(CU467507) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.4 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 5.0 8
(CU851793) A BAC library has been constructed from PN40024 g... 38 5.0 2
(AC025759) Homo sapiens chromosome 5 clone CTD-2367B21, comp... 36 5.4 4
(AC023460) Homo sapiens chromosome 7 clone RP11-799J23 map 7... 40 5.5 8
(EJ250827) 1095344031360 Global-Ocean-Sampling_GS-27-01-01-1... 34 5.9 2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 6.0 8
(AX346432) Sequence 1503 from Patent WO0200928. 38 6.1 4
(CR793161) GR0AAA10AA02RM1 INRA BAC Bos taurus genomic clone... 34 6.3 2
(AC176297) Strongylocentrotus purpuratus clone R3-3005P21, W... 34 7.3 6
(EK354386) 1095468426869 Global-Ocean-Sampling_GS-31-01-01-1... 40 8.2 2
(AX345314) Sequence 385 from Patent WO0200928. 38 8.3 3
(BJ387872) Dictyostelium discoideum cDNA clone:dds5f18, 5' e... 36 8.6 2
(G05928) human STS WI-9345, sequence tagged site. 44 9.2 1
(BV606220) S215P60094FC4.T0 Clara Pan troglodytes troglodyte... 44 9.2 1
(AL683799) Mouse DNA sequence from clone RP23-167D4 on chrom... 44 9.2 1
(AC200594) Rhesus Macaque BAC CH250-15P19 () complete seque... 44 9.2 1
(CT485797) Medicago truncatula chromosome 5 clone mth4-11a3,... 44 9.2 1
(DJ056673) METHODS AND KITS FOR INVESTIGATING CANCER. 44 9.2 1
(DD095833) THERAPEUTIC POLYPEPTIDES, NUCLEIC ACIDS ENCODING ... 44 9.2 1
(CS119578) Sequence 1625 from Patent WO2005054508. 44 9.2 1
(CS118576) Sequence 623 from Patent WO2005054508. 44 9.2 1
(CS118575) Sequence 622 from Patent WO2005054508. 44 9.2 1
(CS080957) Sequence 160 from Patent WO2005040414. 44 9.2 1
(CS072022) Sequence 42 from Patent WO2001049309. 44 9.2 1
(CS063176) Sequence 160 from Patent EP1522594. 44 9.2 1
(CQ728501) Sequence 14435 from Patent WO02068579. 44 9.2 1
(BD344934) Composition. 44 9.2 1
(AX930362) Sequence 1 from Patent WO03087369. 44 9.2 1
(AX188190) Sequence 3885 from Patent WO0142467. 44 9.2 1
(X75308) H.sapiens mRNA for collagenase 3. 44 9.2 1
(AY741163) Homo sapiens matrix metalloproteinase 13 (collage... 44 9.2 1
(AP002751) Homo sapiens genomic DNA, chromosome 11q, clone:R... 44 9.2 1
(AP002370) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 9.2 1
(AP000789) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 9.2 1
(AL357274) Human DNA sequence from clone RP11-685P13 on chro... 44 9.2 1
(AL078634) Human DNA sequence from clone RP5-1049G11 on chro... 44 9.2 1
(AF091886) Homo sapiens Usher syndrome type IIa protein gene... 44 9.2 1
(AC138024) Homo sapiens chromosome 1 clone RP5-1099E6, compl... 44 9.2 1
(AC119429) Homo sapiens chromosome 1 clone RP4-723P6, comple... 44 9.2 1
(AC104837) Homo sapiens chromosome 1 clone RP4-641G12, compl... 44 9.2 1
(AC099674) Homo sapiens chromosome 1 clone RP11-143H12, comp... 44 9.2 1
(AC130852) Rattus norvegicus clone CH230-109N20, WORKING DRA... 44 9.2 1
(AC109991) Rattus norvegicus clone CH230-19B16, *** SEQUENCI... 44 9.2 1
(AC095346) Rattus norvegicus clone CH230-69B5, WORKING DRAFT... 44 9.2 1
(CU856657) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.2 1
(CU469367) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.2 1
(CU467683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.2 1
(AP001018) Homo sapiens genomic DNA, chromosome 11q22 clone:... 44 9.2 1
(AP000875) Homo sapiens genomic DNA, chromosome 11q22 clone:... 44 9.2 1
(AC021209) Homo sapiens chromosome 1 clone RP11-271N19, WORK... 44 9.2 1
(AC018708) Homo sapiens chromosome 11 clone RP11-118L16, WOR... 44 9.2 1
(EJ977188) 1093022127312 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ966867) 1093022050128 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ950938) 1093018944890 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ950772) 1093018943738 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(EJ915920) 1093018560386 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1
(AQ177538) HS_2201_A2_H01_MF CIT Approved Human Genomic Sper... 44 9.2 1
(AQ078091) CIT-HSP-2366K20.TF CIT-HSP Homo sapiens genomic c... 44 9.2 1
(AQ031720) HS_2225_B2_C12_MF CIT Approved Human Genomic Sper... 44 9.2 1
(ED977021) OA_CBa0177K06.r OA_CBa Oryza australiensis genomi... 44 9.2 1
(DX504604) 527_13_14219269_5489_43926_007 Limanthese alba me... 44 9.2 1
(CW554706) OA_ABa0074J07.f OA_ABa Oryza australiensis genomi... 44 9.2 1
(CE651586) tigr-gss-dog-17000367906293 Dog Library Canis lup... 44 9.2 1
(CE377343) tigr-gss-dog-17000362242013 Dog Library Canis lup... 44 9.2 1
(BZ101475) CH230-147C1.TJB CHORI-230 Segment 1 Rattus norveg... 44 9.2 1
(AG353037) Mus musculus molossinus DNA, clone:MSMg01-150K14.... 44 9.2 1
(EB649729) GmUSCLM01pTriplEx204g19f1 Gillichthys liver & mus... 44 9.2 1
(EB647762) GmUSCLM01pTriplEx204h21f1 Gillichthys liver & mus... 44 9.2 1
(CJ461956) Macaca fascicularis mRNA, clone: QmoA-14976, 5' e... 44 9.2 1
(AI956832) ul79d04.x1 Sugano mouse kidney mkia Mus musculus ... 44 9.2 1
(CD000038) AGENCOURT_13631572 NIH_MGC_186 Homo sapiens cDNA ... 44 9.2 1
(CA448955) UI-H-EI1-azg-o-12-0-UI.s1 NCI_CGAP_EI1 Homo sapie... 44 9.2 1

>(AC117075) Dictyostelium discoideum chromosome 2 map 5201047-5455781
strain AX4, complete sequence.
Length = 254733

Score = 1150 bits (580), Expect = 0.0
Identities = 580/580 (100%)
Strand = Plus / Plus


Query: 126 atagaaaagcagatggtcgtacacttcttcaagattttagatcaaaaacaatcatttatc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56203 atagaaaagcagatggtcgtacacttcttcaagattttagatcaaaaacaatcatttatc 56262


Query: 186 tagataataactatgtaaaggatgaattgttatatccagcctctgagtatattagatcaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56263 tagataataactatgtaaaggatgaattgttatatccagcctctgagtatattagatcaa 56322


Query: 246 aagaatttttaaatgctgcctatcatcatggtattcatgttttaatggttggtaaaaatt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56323 aagaatttttaaatgctgcctatcatcatggtattcatgttttaatggttggtaaaaatt 56382


Query: 306 tctcaatcgagaatgaaatcttcccaattaatacatttgaaagagcaactttggtttatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56383 tctcaatcgagaatgaaatcttcccaattaatacatttgaaagagcaactttggtttatt 56442


Query: 366 ataaacaacataaacaattattatacgctttaaaacatagaattccttctggcactggtt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56443 ataaacaacataaacaattattatacgctttaaaacatagaattccttctggcactggtt 56502


Query: 426 gtggtcaaattataccaccacatatggctgttgatgataatggtgatctatcattaaatc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56503 gtggtcaaattataccaccacatatggctgttgatgataatggtgatctatcattaaatc 56562


Query: 486 tattagttgataaaaagaatgaatatttcattgtaatctttagacaattaaccctacttt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56563 tattagttgataaaaagaatgaatatttcattgtaatctttagacaattaaccctacttt 56622


Query: 546 caatctttaaaaaatcaaattcactctacccaattaaaacaattcatttagatagtttta 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56623 caatctttaaaaaatcaaattcactctacccaattaaaacaattcatttagatagtttta 56682


Query: 606 atttaacttgtttaactcaaccacattctgaaactaatgaaatcattacaattaatttag 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56683 atttaacttgtttaactcaaccacattctgaaactaatgaaatcattacaattaatttag 56742


Query: 666 aatttcaacatttaggttttaaaattaatttttcaccatc 705
||||||||||||||||||||||||||||||||||||||||
Sbjct: 56743 aatttcaacatttaggttttaaaattaatttttcaccatc 56782

Score = 56.0 bits (28), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Plus


Query: 857 ggtntanatgtttcaggtggtggtgaaaganncagtgtcggtccantttca 907
||| || ||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 56934 ggtttaaatgtttcaggtggtggtgaaagaaaaagtgttggtccaatttca 56984

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 894,617,052
Number of extensions: 56635059
Number of successful extensions: 5060954
Number of sequences better than 10.0: 148
Length of query: 922
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 898
Effective length of database: 97,308,875,965
Effective search space: 87383370616570
Effective search space used: 87383370616570
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 2
Homology vs Protein
Query= Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Contig-U12073-1Q.Seq.d
(922 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AL844509_364(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 34 6.1
AY819709_1(AY819709|pid:none) Aedes aegypti glutathione S-transf... 34 8.0

>AL844509_364(AL844509|pid:none) Plasmodium falciparum 3D7
chromosome 13.
Length = 1021

Score = 34.3 bits (77), Expect = 6.1
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +2

Query: 152 LQDFRSKTIIYLDNNYVKDELLYPASEYI---RSKEFLNAAYHHGIHVLMVGKNFSIENE 322
L+D+ K I Y+ NN +K E YP +EYI + FL + V ++ + +++ E
Sbjct: 304 LKDYEDKLIPYIKNNQIKVEKKYPFNEYIYILQDSSFLMTILKNVNDVEIINQVYTLLRE 363

Query: 323 IFPINTFERATLV--YYK 370
P +TF L+ YY+
Sbjct: 364 --PNHTFLNNILILQYYR 379

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,020,155,562
Number of extensions: 18409345
Number of successful extensions: 38707
Number of sequences better than 10.0: 2
Number of HSP's gapped: 38691
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 179
Effective length of database: 636,901,312
Effective search space: 114005334848
Effective search space used: 114005334848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.70 gvh: 0.34 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.05
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: mitochondrial
24.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for Contig-U12073-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0