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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01876-1
Contig ID Contig-U01876-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U01876-1 (Contig-U01876-1Q) /CSM_Contig/Contig-U01876-1Q.Seq.d
GAGTATTGTTTTCTGGTATTAATATATAAATATTAATTAAAATTAGAGTA
ATAATGCCAGTTTCAAAAAAACAAAAGGTAGATACAACAGTTACTGTAAC
AACTAAAAAACAAGTTGAAAGTACTGAAAAACCACATAAACAATCAAAAG
AATCTNAAGAATTAAAAGCTACAACAACCCCAACTACAACCACACCAACA
ACAACAACTACTAAAAAACAAACAACAACCAAAGAATCAGTATCAAAACA
ACCAATTATTAAATCACCAAATAGTTCAAAGGTTCATCATTGTTCATTCT
CAAGTTGGTTACCAAAACCAATTACATCTATTAGTTATAATCAAGAAAAT
AATTTAATTGCAGTATCACGTCAAGAATCACCACTTGAAATTTGGATTAA
AAATGATCAAGAATTAATTTTACTTAAAACATTAGGAGGATCAAAATTTG
ATTTACCAATTATTTCAGTAATATGGTTAAATAAAACAATATTATTATCA
ACATTTGAAAATAAATTTGTAATTTGGGATATTTCAAGTTATTCAATTAT
ACAAGAATTAAATTCAATTGGTACTGTAAGAGGTGTATCATTTAATAGAT
TATTAAATTTATTAGCAGTTTGTACACATGATTCAAATGTACGTTTATAT
AATTTCAAAAAAGATGATAATGAAATTGAATATCAATCTTCATTCCCATC
AGTTTCAGATTCAAAAATTAATACTATTCAATGGGCATTAGATCAAAAAA
CTATCTTGGTTGGTTGTCAAAATCAATTGGTTGTTTTTAAAGTTGATTCT
TTACGTTCATCTTTAACTATTACAACTGATAATATAGTTTCATTAAATTC
ATTAAATGATAATACAGTTGCTTGTGGTTTTACAAATGGTTTTATTTCAA
TTATTGATATTAAATTTGGTAGTATTATTCAAGATTTTAGAAATCTTCAT
GCTCCAGTTAGATCAATTCAAGTTAATAAAAAAGGTGATCAATTCTTTGC
ATCTGGTGATGAAGCAACCATTGTATCATATAATAAATCAAGTGGAAATA
ATAAATGGGCATTCAGTGGTCAACATAAAAGAGATAGTCATGATATTAAA
TGTTTAGAAATTACAAATACTCATTTAATCTCTGGTGGTAATAGTACTCA
AATGATCTTTTATGATTTATCTAATTTCTCAAGTTTATCAAATTCAAATG
----------CCAAATAACTCTAATGAATTACTCATTTGGACTCAAAATG
AACAATTTAAAGTAAATAAAGATTTATCAAATGAACAACAATTAACAAAA
GCTGGTTCTTCATTCACTGAAGTTATTTTTGCCTCTCAATCTGGTAATCA
AGGTGATCTCGTTTTATTAGATTTATCTTTTATTGATAAAGTATTACCAA
AACTTCCAGAAGCTATTAAATTAAAGAAATTTGGTGGTTGTAATTAATTA
ATTTAAAAAAAAAAAAAAGTTTAAAAAAAAAAAATAAAAATAAAAAAAAA
AATGATTAAAAATAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1520
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2906813
End point 2908334
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01876
List of clone(s) 

est1=SSJ461F,1,634
est2=VFF822F,560,1201
est3=SSJ461Z,1202,1522
Translated Amino Acid sequence 
vlfsgini*ILIKIRVIMPVSKKQKVDTTVTVTTKKQVESTEKPHKQSKESXELKATTTP
TTTTPTTTTTKKQTTTKESVSKQPIIKSPNSSKVHHCSFSSWLPKPITSISYNQENNLIA
VSRQESPLEIWIKNDQELILLKTLGGSKFDLPIISVIWLNKTILLSTFENKFVIWDISSY
SIIQELNSIGTVRGVSFNRLLNLLAVCTHDSNVRLYNFKKDDNEIEYQSSFPSVSDSKIN
TIQWALDQKTILVGCQNQLVVFKVDSLRSSLTITTDNIVSLNSLNDNTVACGFTNGFISI
IDIKFGSIIQDFRNLHAPVRSIQVNKKGDQFFASGDEATIVSYNKSSGNNKWAFSGQHKR
DSHDIKCLEITNTHLISGGNSTQMIFYDLSNFSSLSNSN---

---PNNSNELLIWTQNEQFKVNKDLSNEQQLTKAGSSFTEVIFASQSGNQGDLVLLDLSF
IDKVLPKLPEAIKLKKFGGCN*li*kkkkv*kkkikikkkmiknkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
eycflvliyky*lkle**cqfqknkr*iqqll*qlknklkvlknhinnqknlkn*klqqp
qlqphqqqqllknkqqpknqyqnnqllnhqivqrfiivhsqvgyqnqlhllviikkii*l
qyhvknhhlkfglkmikn*fylkh*edqnliyqlfq*yg*ikqyyyqhlkinl*fgifqv
iqlykn*iqlvl*evyhlidy*iy*qfvhmiqmyvyiiskkmimklninlhshqfqiqkl
ilfngh*ikklswlvvkinwlflklilyvhl*llqlii*fh*ih*miiqllvvlqmvlfq
llilnlvvlfkileifmlqldqfklikkvinslhlvmkqplyhiinqveiinghsvvnik
eivmilnv*klqili*slvvivlk*sfmiylisqvyqiqm---

---PNNSNELLIWTQNEQFKVNKDLSNEQQLTKAGSSFTEVIFASQSGNQGDLVLLDLSF
IDKVLPKLPEAIKLKKFGGCN*li*kkkkv*kkkikikkkmiknkkkkk

Frame B:
sivfwy*yinin*n*snnasfkktkgrynsycnn*kts*ky*ktt*tikrixriksynnp
nynhtnnnny*ktnnnqrisikttny*itk*fkgsslfilklvtktnyiy*l*srk*fnc
sitsritt*nld*k*srinft*nirriki*ftnyfsnmvk*nniiini*k*icnlgyfkl
fnytrikfnwyckrcii**iikfisslyt*fkctfi*fqkr***n*isifipisfrfkn*
yysmgirsknylgwlsksigcf*s*fftfifnyyn**ysfikfik**ysclwfykwfyfn
y*y*iw*yysrf*ksscss*inss**kr*silciw**snhcii**ikwk**mgiqwst*k
r*s*y*mfrnykysfnlww**ysndll*fi*flkfikfk---

---qitlmnysfglkmnnlk*ikiyqmnnn*qklvlhslklflplnlvikvisfy*iyll
likyyqnfqklln*rnlvvvin*fkkkkkfkkkk*k*kkk*lkikkkkk

Frame C:
vlfsgini*ILIKIRVIMPVSKKQKVDTTVTVTTKKQVESTEKPHKQSKESXELKATTTP
TTTTPTTTTTKKQTTTKESVSKQPIIKSPNSSKVHHCSFSSWLPKPITSISYNQENNLIA
VSRQESPLEIWIKNDQELILLKTLGGSKFDLPIISVIWLNKTILLSTFENKFVIWDISSY
SIIQELNSIGTVRGVSFNRLLNLLAVCTHDSNVRLYNFKKDDNEIEYQSSFPSVSDSKIN
TIQWALDQKTILVGCQNQLVVFKVDSLRSSLTITTDNIVSLNSLNDNTVACGFTNGFISI
IDIKFGSIIQDFRNLHAPVRSIQVNKKGDQFFASGDEATIVSYNKSSGNNKWAFSGQHKR
DSHDIKCLEITNTHLISGGNSTQMIFYDLSNFSSLSNSN---

---k*l**ithldsk*ti*sk*rfik*ttinkswffih*syfclsiw*sr*srfirfify
**sitktsrsy*ikeiwwl*linlkkkkslkkknknkkknd*k*kkkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01876-1 (Contig-U01876-1Q)
/CSM_Contig/Contig-U01876-1Q.Seq.d
         (1530 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01876-1 (Contig-U01876-1Q) /CSM_Contig/Conti...  2317  0.0
Contig-U13008-1 (Contig-U13008-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13531-1 (Contig-U13531-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U11170-1 (Contig-U11170-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U10316-1 (Contig-U10316-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U01624-1 (Contig-U01624-1Q) /CSM_Contig/Conti...    38  0.027
Contig-U14735-1 (Contig-U14735-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U13493-1 (Contig-U13493-1Q) /CSM_Contig/Conti...    36  0.11

>Contig-U01876-1 (Contig-U01876-1Q) /CSM_Contig/Contig-U01876-1Q.Seq.d
          Length = 1530

 Score = 2317 bits (1169), Expect = 0.0
 Identities = 1199/1199 (100%)
 Strand = Plus / Plus

                                                                        
Query: 256  ttattaaatcaccaaatagttcaaaggttcatcattgttcattctcaagttggttaccaa 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256  ttattaaatcaccaaatagttcaaaggttcatcattgttcattctcaagttggttaccaa 315

                                                                        
Query: 316  aaccaattacatctattagttataatcaagaaaataatttaattgcagtatcacgtcaag 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316  aaccaattacatctattagttataatcaagaaaataatttaattgcagtatcacgtcaag 375

                                                                        
Query: 376  aatcaccacttgaaatttggattaaaaatgatcaagaattaattttacttaaaacattag 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376  aatcaccacttgaaatttggattaaaaatgatcaagaattaattttacttaaaacattag 435

                                                                        
Query: 436  gaggatcaaaatttgatttaccaattatttcagtaatatggttaaataaaacaatattat 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  gaggatcaaaatttgatttaccaattatttcagtaatatggttaaataaaacaatattat 495

                                                                        
Query: 496  tatcaacatttgaaaataaatttgtaatttgggatatttcaagttattcaattatacaag 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  tatcaacatttgaaaataaatttgtaatttgggatatttcaagttattcaattatacaag 555

                                                                        
Query: 556  aattaaattcaattggtactgtaagaggtgtatcatttaatagattattaaatttattag 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  aattaaattcaattggtactgtaagaggtgtatcatttaatagattattaaatttattag 615

                                                                        
Query: 616  cagtttgtacacatgattcaaatgtacgtttatataatttcaaaaaagatgataatgaaa 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  cagtttgtacacatgattcaaatgtacgtttatataatttcaaaaaagatgataatgaaa 675

                                                                        
Query: 676  ttgaatatcaatcttcattcccatcagtttcagattcaaaaattaatactattcaatggg 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  ttgaatatcaatcttcattcccatcagtttcagattcaaaaattaatactattcaatggg 735

                                                                        
Query: 736  cattagatcaaaaaactatcttggttggttgtcaaaatcaattggttgtttttaaagttg 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  cattagatcaaaaaactatcttggttggttgtcaaaatcaattggttgtttttaaagttg 795

                                                                        
Query: 796  attctttacgttcatctttaactattacaactgataatatagtttcattaaattcattaa 855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  attctttacgttcatctttaactattacaactgataatatagtttcattaaattcattaa 855

                                                                        
Query: 856  atgataatacagttgcttgtggttttacaaatggttttatttcaattattgatattaaat 915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  atgataatacagttgcttgtggttttacaaatggttttatttcaattattgatattaaat 915

                                                                        
Query: 916  ttggtagtattattcaagattttagaaatcttcatgctccagttagatcaattcaagtta 975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ttggtagtattattcaagattttagaaatcttcatgctccagttagatcaattcaagtta 975

                                                                        
Query: 976  ataaaaaaggtgatcaattctttgcatctggtgatgaagcaaccattgtatcatataata 1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ataaaaaaggtgatcaattctttgcatctggtgatgaagcaaccattgtatcatataata 1035

                                                                        
Query: 1036 aatcaagtggaaataataaatgggcattcagtggtcaacataaaagagatagtcatgata 1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aatcaagtggaaataataaatgggcattcagtggtcaacataaaagagatagtcatgata 1095

                                                                        
Query: 1096 ttaaatgtttagaaattacaaatactcatttaatctctggtggtaatagtactcaaatga 1155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ttaaatgtttagaaattacaaatactcatttaatctctggtggtaatagtactcaaatga 1155

                                                                        
Query: 1156 tcttttatgatttatctaatttctcaagtttatcaaattcaaatgnnnnnnnnnnccaaa 1215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 tcttttatgatttatctaatttctcaagtttatcaaattcaaatgnnnnnnnnnnccaaa 1215

                                                                        
Query: 1216 taactctaatgaattactcatttggactcaaaatgaacaatttaaagtaaataaagattt 1275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 taactctaatgaattactcatttggactcaaaatgaacaatttaaagtaaataaagattt 1275

                                                                        
Query: 1276 atcaaatgaacaacaattaacaaaagctggttcttcattcactgaagttatttttgcctc 1335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 atcaaatgaacaacaattaacaaaagctggttcttcattcactgaagttatttttgcctc 1335

                                                                        
Query: 1336 tcaatctggtaatcaaggtgatctcgttttattagatttatcttttattgataaagtatt 1395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 tcaatctggtaatcaaggtgatctcgttttattagatttatcttttattgataaagtatt 1395

                                                                       
Query: 1396 accaaaacttccagaagctattaaattaaagaaatttggtggttgtaattaattaattt 1454
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 accaaaacttccagaagctattaaattaaagaaatttggtggttgtaattaattaattt 1454


 Score =  289 bits (146), Expect = 4e-78
 Identities = 163/170 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtattgttttctggtattaatatataaatattaattaaaattagagtaataatgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gagtattgttttctggtattaatatataaatattaattaaaattagagtaataatgccag 60

                                                                       
Query: 61  tttcnnnnnnncaaaaggtagatacaacagttactgtaacaactaaaaaacaagttgaaa 120
           ||||       |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttcaaaaaaacaaaaggtagatacaacagttactgtaacaactaaaaaacaagttgaaa 120

                                                             
Query: 121 gtactgaaaaaccacataaacaatcaaaagaatctnaagaattaaaagct 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtactgaaaaaccacataaacaatcaaaagaatctnaagaattaaaagct 170


>Contig-U13008-1 (Contig-U13008-1Q) /CSM_Contig/Contig-U13008-1Q.Seq.d
          Length = 1059

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 898 caattattgatattaaatttg 918
           |||||||||||||||||||||
Sbjct: 900 caattattgatattaaatttg 880


>Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Contig-U11054-1Q.Seq.d
          Length = 2106

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 22  atatataaatattaattaaaatta 45
           ||||||||||| ||||||||||||
Sbjct: 96  atatataaataataattaaaatta 119


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,285
Number of Sequences: 6905
Number of extensions: 33285
Number of successful extensions: 3916
Number of sequences better than 10.0: 468
length of query: 1530
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1514
effective length of database: 5,564,391
effective search space: 8424487974
effective search space used: 8424487974
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.10
Homology vs DNA 
Query= Contig-U01876-1 (Contig-U01876-1Q) /CSM_Contig/Contig-U01876-1Q.Seq.d
         (1530 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ410341) Dictyostelium discoideum cDNA clone:ddv12l06, 5' ...  1269   0.0    1
(C91077) Dictyostelium discoideum slug cDNA, clone SSJ461.        484   e-132  1
(AU074078) Dictyostelium discoideum slug cDNA, clone SSJ461.      190   1e-75  2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   5e-05  19
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   1e-04  18
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   3e-04  20
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   3e-04  20
(CP000728) Clostridium botulinum F str. Langeland, complete ...    42   6e-04  21
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   8e-04  22
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.001  18
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   0.002  13
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.002  20
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    42   0.003  13
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.005  18
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   0.006  19
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part...    32   0.006  7
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   0.006  20
(AC125390) Medicago truncatula clone mth2-17c11, complete se...    36   0.007  9
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    34   0.008  20
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       36   0.011  20
(CR749167) Zebrafish DNA sequence from clone DKEY-23A17 in l...    38   0.012  9
(AC187466) Medicago truncatula chromosome 2 BAC clone mth2-6...    36   0.015  9
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   0.018  16
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    32   0.020  15
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   0.021  15
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.023  16
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.024  14
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.031  20
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    38   0.031  20
(AM462692) Vitis vinifera contig VV78X127706.5, whole genome...    44   0.039  3
(AE017245) Mycoplasma synoviae 53, complete genome.                34   0.045  18
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    36   0.050  20
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.052  17
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.061  18
(AL844507) Plasmodium falciparum chromosome 8.                     38   0.064  17
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.067  14
(BX548174) Prochlorococcus marinus MED4 complete genome.           36   0.068  22
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.074  13
(BM357918) GA__Ea0002D07r Gossypium arboreum 7-10 dpa fiber ...    40   0.078  3
(BX908731) Zebrafish DNA sequence from clone DKEY-19F23 in l...    50   0.083  7
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.088  9
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    30   0.094  13
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.10   13
(EU168190) Heterosigma akashiwo strain NIES 293 chloroplast,...    36   0.12   12
(AM180355) Clostridium difficile 630 complete genome.              32   0.12   20
(AY232272) Dictyostelium discoideum putative protein Roco10 ...    36   0.12   6
(EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,...    36   0.13   12
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.13   19
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   0.13   13
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   0.14   16
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    44   0.16   11
(AF116775) Pedinomonas minor mitochondrion, complete genome.       30   0.19   7
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.19   15
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.20   16
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    46   0.21   16
(CT559233) A BAC library has been constructed from cultivar ...    40   0.22   3
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    46   0.22   12
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   0.24   21
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.26   1
(AP003233) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.26   1
(AP002909) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.26   1
(CU463812) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.26   1
(EI910966) VUH2-34P2TR VUUBBa (VUH2) Vigna unguiculata genom...    50   0.26   1
(EI910901) VUH2-34P1TR VUUBBa (VUH2) Vigna unguiculata genom...    50   0.26   1
(EI910897) VUH2-34N15TR VUUBBa (VUH2) Vigna unguiculata geno...    50   0.26   1
(CW764641) OG_BBa0075O12.f OG_BBa Oryza glaberrima genomic c...    50   0.26   1
(CL754831) OR_BBa0122G02.r OR_BBa Oryza nivara genomic clone...    50   0.26   1
(CL733218) OR_BBa0066A01.f OR_BBa Oryza nivara genomic clone...    50   0.26   1
(BH663662) BOMOC54TF BO_2_3_KB Brassica oleracea genomic clo...    50   0.26   1
(DW283333) UI-S-HH0-adw-o-10-0-UI.s1 UI-S-HH0 Euprymna scolo...    50   0.26   1
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   0.28   15
(AC107802) Mus musculus clone RP23-31O22, WORKING DRAFT SEQU...    38   0.29   6
(AC151545) Callithrix jacchus clone CH259-458N12, WORKING DR...    38   0.30   10
(FH394010) CHO_OF4799xo12r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.37   2
(AL356252) Human DNA sequence from clone RP11-468L10 on chro...    36   0.38   6
(EK324753) 1095467003031 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.40   2
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ...    38   0.42   20
(AF396436) Tetrahymena thermophila strain SB210 mitochondrio...    36   0.45   9
(AY217738) Eimeria tenella apicoplast, complete genome.            32   0.45   8
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   0.48   20
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         32   0.51   22
(AJ426041) Chrysomya megacephala mitochondrial NADH2 gene, C...    36   0.54   6
(EL498657) PFLAB1-M_F3_-P4A_D10_08.AB1 Blood stage Plasmodiu...    34   0.58   3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.60   13
(AE015450) Mycoplasma gallisepticum strain R complete genome.      34   0.60   22
(AM487064) Vitis vinifera, whole genome shotgun sequence, co...    36   0.61   8
(EA679207) Sequence 58086 from patent US 7365185.                  34   0.64   4
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   0.66   20
(AM443874) Vitis vinifera contig VV78X089951.4, whole genome...    44   0.69   2
(CP000049) Borrelia turicatae 91E135, complete genome.             36   0.74   19
(AC202591) Medicago truncatula clone mth2-53n12, WORKING DRA...    36   0.78   8
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    30   0.78   11
(AM481431) Vitis vinifera contig VV78X083295.17, whole genom...    44   0.87   4
(AC079981) Homo sapiens chromosome 16 clone RP11-215O6, WORK...    40   0.87   7
(Z98547) Plasmodium falciparum MAL3P3.                             40   0.92   7
(CP000395) Borrelia afzelii PKo, complete genome.                  32   0.93   21
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    32   0.96   14
(AM488188) Vitis vinifera contig VV78X107806.6, whole genome...    44   0.98   2
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    32   0.99   9
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    36   1.0    22
(CU571179) Zebrafish DNA sequence from clone DKEY-261L11 in ...    48   1.0    1
(AY318871) Canarypox virus strain ATCC VR-111, complete genome.    48   1.0    1
(AC146077) Pan troglodytes BAC clone RP43-45A15 from chromos...    48   1.0    1
(AC146240) Pan troglodytes chromosome UNK clone RP43-27L15, ...    48   1.0    1
(DQ280174) Muntiacus muntjak vaginalis chromosome 3+X clone ...    48   1.0    1
(AC094171) Rattus norvegicus clone CH230-2M12, WORKING DRAFT...    48   1.0    1
(AC093140) Pan troglodytes clone RP43-27L15, WORKING DRAFT S...    48   1.0    1
(AC220075) Heliconius erato clone BBAM-33L14, WORKING DRAFT ...    48   1.0    1
(AC170949) Bos taurus clone CH240-263J2, WORKING DRAFT SEQUE...    48   1.0    1
(AC163432) Bos taurus clone CH240-123E13, WORKING DRAFT SEQU...    48   1.0    1
(EK304367) 1095462375741 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.0    1
(EJ161992) 1092344051541 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.0    1
(DX488422) Cpl30213 Papaya Genomic DNA BAC Library Carica pa...    48   1.0    1
(DE604684) Bombyx mori genomic DNA, Fosmid clone:GBMFno266_k...    48   1.0    1
(DE398010) Bombyx mori genomic DNA, BAC clone:19G6B.               48   1.0    1
(EG962623) AU_Ich_018C_C09 Whole organism normalized cDNA li...    48   1.0    1
(AJ928175) Theileria annulata EST, clone tam029b03_p1k.            48   1.0    1
(BJ411628) Dictyostelium discoideum cDNA clone:ddv5m05, 5' e...    48   1.0    1
(BJ388476) Dictyostelium discoideum cDNA clone:dds9a23, 5' e...    48   1.0    1
(BJ324666) Dictyostelium discoideum cDNA clone:dda7l12, 5' e...    48   1.0    1
(FK125371) XABT165056.b1 Gateway compatible cien cDNA librar...    48   1.0    1
(BX649600) Zebrafish DNA sequence from clone CH211-222M18 in...    38   1.0    9
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    30   1.1    12
(EJ403917) 1093012074895 Global-Ocean-Sampling_GS-28-01-01-1...    40   1.1    2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    36   1.1    17
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    34   1.1    13
(CU633466) M.truncatula DNA sequence from clone MTH2-41H13 o...    38   1.1    8
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    40   1.1    10
(AC179437) Strongylocentrotus purpuratus clone R3-63A4, WORK...    40   1.2    4
(EI491527) PV_GBa0107N14.f PV_GBa Phaseolus vulgaris genomic...    42   1.2    2
(CU633648) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    5
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       34   1.3    13
(U87145) Toxoplasma gondii chloroplast, complete genome.           34   1.3    6
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    36   1.3    10
(BM399953) 5009-0-63-F08.t.1 Chilcoat/Turkewitz cDNA (large ...    38   1.3    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    32   1.4    12
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    30   1.5    11
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    36   1.6    6
(AX345201) Sequence 272 from Patent WO0200928.                     40   1.6    5
(AC025226) Homo sapiens BAC clone RP11-57J19 from Y, complet...    40   1.6    7
(AC105612) Rattus norvegicus chromosome 18 clone CH230-226O1...    36   1.6    6
(EJ853028) 1093017900880 Global-Ocean-Sampling_GS-30-02-01-1...    40   1.7    2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    34   1.7    10
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    42   1.7    20
(EK416754) 1095515470087 Global-Ocean-Sampling_GS-31-01-01-1...    38   1.7    2
(AP005362) Homo sapiens genomic DNA, chromosome 8q23, clone:...    36   1.8    7
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   1.8    23
(AJ414696) Sulfolobus virus SIRV-1 complete viral genome.          34   1.8    7
(AC199644) Pan troglodytes BAC clone CH251-388J16 from chrom...    40   1.9    6
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    34   1.9    22
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   2.0    2
(AB090329) Clostridium septicum genes for hyaluronidase, col...    38   2.0    2
(Z95559) Caenorhabditis elegans YAC Y41E3.                         38   2.1    9
(AC176770) Strongylocentrotus purpuratus clone R3-3104C19, W...    38   2.1    7
(BX927206) Zebrafish DNA sequence from clone CH211-71K14 in ...    34   2.1    2
(AC126794) Medicago truncatula chromosome 4 clone mth2-24j7,...    38   2.1    8
(U37541) Drosophila melanogaster mitochondrion, complete gen...    36   2.1    5
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    32   2.2    14
(DQ832717) Phytophthora sojae mitochondrion, complete genome.      40   2.3    7
(AC202828) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    36   2.3    6
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...    32   2.3    6
(DQ158857) Bigelowiella natans nucleomorph chromosome 2, com...    32   2.4    11
(AC146587) Medicago truncatula clone mth2-144j8, complete se...    38   2.4    7
(FP102219) Medicago truncatula chromosome 5 clone mte1-46g2,...    38   2.5    8
(AC169177) Medicago truncatula chromosome 7 clone mth2-1p4, ...    38   2.5    5
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   2.5    9
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    30   2.5    21
(AC187294) Glycine max clone gmw1-105h23, complete sequence.       36   2.5    8
(AE017263) Mesoplasma florum L1 complete genome.                   36   2.5    22
(AM473926) Vitis vinifera contig VV78X057844.2, whole genome...    40   2.6    2
(AC189540) Brassica rapa subsp. pekinensis clone KBrH003N18,...    40   2.6    6
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    34   2.6    14
(CR318643) Zebrafish DNA sequence from clone CH211-283F13 in...    44   2.7    4
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    38   2.7    10
(AC067981) Homo sapiens chromosome 18, clone RP11-805E19, co...    32   2.8    9
(AM445909) Vitis vinifera contig VV78X275254.2, whole genome...    38   2.8    4
(AC226374) Homo sapiens BAC clone RP11-521G19 from chromosom...    40   2.8    8
(CU981939) Brassica napus GSS, clone JBnB125N04, end read, p...    36   2.9    2
(ER615709) 1093017113819 Global-Ocean-Sampling_GS-36-01-01-2...    36   3.0    3
(CU638714) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   3.0    6
(AX392735) Sequence 25 from Patent WO0212526.                      32   3.1    8
(AR707082) Sequence 25 from patent US 6933145.                     32   3.1    8
(AC201283) Strongylocentrotus purpuratus clone R3-16E21, WOR...    34   3.2    7
(AC120327) Rattus norvegicus clone CH230-61A15, *** SEQUENCI...    36   3.2    8
(AC145474) Rattus norvegicus chromosome 1 clone RP32-113N8 m...    38   3.3    5
(AC128279) Rattus norvegicus clone CH230-354I9, *** SEQUENCI...    44   3.3    9
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    32   3.4    15
(FI296659) AdH1146-CPY2-E1TR AdH1 Arachis duranensis genomic...    44   3.5    2
(AM453246) Vitis vinifera contig VV78X043337.44, whole genom...    44   3.6    3
(AM485288) Vitis vinifera contig VV78X039910.7, whole genome...    40   3.7    5
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    32   3.7    11
(AM632904) Entamoeba dispar GSS, clone dispar95g02.q1k.            36   3.7    3
(AM471086) Vitis vinifera contig VV78X024905.29, whole genom...    44   3.8    2
(AX458544) Sequence 90 from Patent WO0246454.                      34   3.8    6
(AC179972) Strongylocentrotus purpuratus clone R3-20B21, WOR...    34   4.0    6
(BX950181) Zebrafish DNA sequence from clone DKEY-28O19 in l...    46   4.0    1
(AB096696) Numida meleagris hsp70 mRNA for heat shock protei...    46   4.0    1
(AM466917) Vitis vinifera contig VV78X008901.25, whole genom...    46   4.0    1
(AM441805) Vitis vinifera contig VV78X189584.9, whole genome...    46   4.0    1
(AM437426) Vitis vinifera contig VV78X162091.11, whole genom...    46   4.0    1
(AM428918) Vitis vinifera contig VV78X033784.9, whole genome...    46   4.0    1
(AC126008) Medicago truncatula chromosome 6 clone mth2-13e5,...    46   4.0    1
(CQ575693) Sequence 3451 from Patent WO0171042.                    46   4.0    1
(CU856076) H.melpomene DNA sequence from clone AEHM-7E22.          46   4.0    1
(AF425303) Cryptolithodes sitchensis 12S ribosomal RNA gene,...    46   4.0    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    46   4.0    1
(AC150553) Drosophila melanogaster clone BACR09H20, complete...    46   4.0    1
(AC150552) Drosophila melanogaster clone BACR12I17, complete...    46   4.0    1
(AC009254) Drosophila melanogaster, chromosome 2L, region 40...    46   4.0    1
(AC123511) Homo sapiens 3 BAC RP11-637F14 (Roswell Park Canc...    46   4.0    1
(AC109592) Homo sapiens BAC clone RP11-750O22 from 4, comple...    46   4.0    1
(AC105763) Homo sapiens BAC clone RP11-698H21 from 4, comple...    46   4.0    1
(AC159520) Bos taurus clone CH240-76J19, WORKING DRAFT SEQUE...    46   4.0    1
(AC150731) Papio anubis clone RP41-152E23, WORKING DRAFT SEQ...    46   4.0    1
(CU927953) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.0    1
(CU633536) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.0    1
(AC224980) Bos taurus clone CH240-470P1, WORKING DRAFT SEQUE...    46   4.0    1
(AC222461) Bos taurus clone CH240-418O15, WORKING DRAFT SEQU...    46   4.0    1
(AC218789) Bos taurus clone CH240-293K19, WORKING DRAFT SEQU...    46   4.0    1
(AC211816) Chlorocebus aethiops clone CH252-143P19, WORKING ...    46   4.0    1
(AC196340) Nomascus leucogenys leucogenys clone CH271-136I12...    46   4.0    1
(AC174979) Bos taurus clone CH240-119N21, WORKING DRAFT SEQU...    46   4.0    1
(AC173372) Strongylocentrotus purpuratus clone R3-1040C10, W...    46   4.0    1
(AC169355) Bos taurus clone CH240-199D12, WORKING DRAFT SEQU...    46   4.0    1
(AC024147) Homo sapiens chromosome 3 clone RP11-199N2, WORKI...    46   4.0    1
(AC021378) Homo sapiens clone RP11-26G6, WORKING DRAFT SEQUE...    46   4.0    1
(AC017996) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   4.0    1
(AC010933) Homo sapiens chromosome 3 clone RP11-203M24 map 3...    46   4.0    1
(DQ443242) Bombyx mori ubiquitin related modifier mRNA, comp...    46   4.0    1
(BH558366) BOGLJ13TR BOGL Brassica oleracea genomic clone BO...    46   4.0    1
(BH547462) BOHNT77TR BOHN Brassica oleracea genomic clone BO...    46   4.0    1
(FI197024) CccaBa028-B19TR CccABa Cajanus cajan genomic clon...    46   4.0    1
(ER367411) 1093022075532 Global-Ocean-Sampling_GS-34-01-01-1...    46   4.0    1
(EJ440825) 1093015304106 Global-Ocean-Sampling_GS-28-01-01-1...    46   4.0    1
(EJ378150) 1092963750889 Global-Ocean-Sampling_GS-28-01-01-1...    46   4.0    1
(EI946461) akm3bd47r Km3-3010m-Ionian Sea marine metagenome ...    46   4.0    1
(EI509531) MUGQ_CH252P520M19T7_GL508_068 CHORI-252 Vervet Mo...    46   4.0    1
(DE356636) Bombyx mori genomic DNA, BAC clone:BET_082_P21.         46   4.0    1
(DE344622) Bombyx mori genomic DNA, BAC clone:BET_046_J19.         46   4.0    1
(DE288739) Bombyx mori genomic DNA, BAC clone:BES_017_N01.         46   4.0    1
(CZ685661) OA_BBa0172E06.r OA_BBa Oryza alta genomic clone O...    46   4.0    1
(CZ523913) GMW2-39M13a.b2 GMW2 Glycine max genomic, genomic ...    46   4.0    1
(CT558620) A BAC library has been constructed from cultivar ...    46   4.0    1
(CT546161) A BAC library has been constructed from cultivar ...    46   4.0    1
(AG931349) Drosophila melanogaster DNA, clone: DME1-016L13.R...    46   4.0    1
(DY230672) EST01407 BmP Bombyx mori cDNA clone Bmp006_006127...    46   4.0    1
(CK534944) rswgb0_003183.y1 swg Bombyx mori cDNA, mRNA seque...    46   4.0    1
(CK529945) rswga0_001142.y1 swg Bombyx mori cDNA, mRNA seque...    46   4.0    1
(CK521791) rswea0_006646.y1 swe Bombyx mori cDNA, mRNA seque...    46   4.0    1
(CK500903) rswbb0_012094.y1 swb Bombyx mori cDNA, mRNA seque...    46   4.0    1
(CK497086) rswbb0_006281.y1 swb Bombyx mori cDNA, mRNA seque...    46   4.0    1
(AJ928338) Theileria annulata EST, clone tam025b04_q1k.            46   4.0    1
(AJ927863) Theileria annulata EST, clone tam027g06_q1k.            46   4.0    1
(BY935728) Bombyx mori cDNA, clone:E_FL_prW-_06F24_F_0, 5' e...    46   4.0    1
(BB992329) Bombyx mori cDNA, clone:E_ET_MSV3_28A03_R_0, 3' e...    46   4.0    1
(FK193175) XABT206656.b1 Gateway compatible cien cDNA librar...    46   4.0    1
(FK180575) XABT198863.b1 Gateway compatible cien cDNA librar...    46   4.0    1
(AW958730) EST370800 MAGE resequences, MAGE Homo sapiens cDN...    46   4.0    1
(CP000382) Clostridium novyi NT, complete genome.                  46   4.0    1
(AC193804) Heliconius erato clone BBAM-38A20, WORKING DRAFT ...    38   4.1    10
(AM629271) Entamoeba dispar GSS, clone dispar34h06.p1k.            34   4.2    3
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    36   4.3    19
(FB676005) Sequence 8 from Patent WO2007118704.                    40   4.3    2
(CU640487) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    38   4.4    6
(AX392736) Sequence 26 from Patent WO0212526.                      40   4.5    7
(AR707083) Sequence 26 from patent US 6933145.                     40   4.5    7
(DJ060392) Method and nucleic acids for the improved treatme...    30   4.6    6
(DD214671) PROGNOSTIC MARKERS FOR PREDICTION OF TREATMENT RE...    30   4.6    6
(DD214488) PROGNOSTIC MARKERS FOR PREDICTION OF TREATMENT RE...    30   4.6    6
(CS248999) Sequence 91 from Patent WO2005121360.                   30   4.6    6
(CS138395) Sequence 91 from Patent EP1561821.                      30   4.6    6
(CS124739) Sequence 425 from Patent WO2005059172.                  30   4.6    6
(GM043452) Sequence 91 from Patent WO2006133866.                   30   4.6    6
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    34   4.6    20
(AC091931) Homo sapiens chromosome 5 clone RP11-313L6, compl...    36   4.7    8
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   4.7    19
(AB064566) Lilium henryi chloroplast DNA, trnT-trnL intergen...    36   4.7    2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    30   4.7    13
(FP102772) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   4.8    5
(DU334579) 1098312086452 CHORI-243 Ovis aries genomic clone ...    44   4.8    2
(AC136305) Homo sapiens chromosome 8, clone RP11-104K22, com...    36   4.8    6
(EK311632) 1095462399285 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.9    2
(AC188914) Aotus nancymaae clone CH258-466D13, WORKING DRAFT...    44   5.0    3
(EJ129129) 1092343407280 Global-Ocean-Sampling_GS-27-01-01-1...    30   5.0    4
(ER529588) 1093015738598 Global-Ocean-Sampling_GS-35-01-01-1...    38   5.0    2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    34   5.1    9
(AP009905) Lotus japonicus genomic DNA, clone: LjT09C09, TM2...    34   5.1    6
(AC209044) Populus trichocarpa clone POP057-J01, complete se...    34   5.1    9
(CZ537865) SRAA-aad16a12.g1 Strongyloides ratti whole genome...    44   5.1    2
(AL034559) Plasmodium falciparum MAL3P7.                           36   5.2    9
(EJ380468) 1092963760286 Global-Ocean-Sampling_GS-28-01-01-1...    34   5.2    3
(AX346975) Sequence 2046 from Patent WO0200928.                    34   5.3    7
(CU571168) Zebrafish DNA sequence from clone CH73-34B5 in li...    42   5.4    5
(AM285301) Spiroplasma citri GII3-3X chromosome, contig Cont...    30   5.4    7
(AE002130) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    30   5.5    6
(AX345863) Sequence 934 from Patent WO0200928.                     36   5.6    5
(AE015927) Clostridium tetani E88, complete genome.                36   5.6    20
(CP001205) Borrelia burgdorferi ZS7, complete genome.              32   5.7    21
(CV672744) RET7SJ_05B12.T7 Schistosoma japonicum reverse cDN...    36   5.8    2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    34   5.8    19
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    30   5.9    14
(AP007176) Aspergillus oryzae RIB40 mitochondrial DNA, compl...    38   5.9    6
(DQ866050) Simosyrphus grandicornis mitochondrion, complete ...    32   6.0    7
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    34   6.1    20
(AL441988) Human DNA sequence from clone RP11-348I14 on chro...    40   6.1    6
(AC232695) Medicago truncatula chromosome 7 clone mth2-27c20...    34   6.1    7
(DU944051) 364123 Tomato EcoRI BAC Library Solanum lycopersi...    40   6.2    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   6.2    13
(CR381601) Zebrafish DNA sequence from clone DKEY-194G4 in l...    40   6.3    6
(CV911101) PE022D12 mycelium, carbon starvation Phytophthora...    32   6.5    3
(AC182505) Cavia porcellus clone CH234-340P5, WORKING DRAFT ...    34   6.6    9
(AX347157) Sequence 2228 from Patent WO0200928.                    36   6.8    3
(AF030694) Plasmodium falciparum strain Dd2 heat shock prote...    38   6.8    4
(AL133407) Human DNA sequence from clone RP3-395K14 on chrom...    38   6.9    8
(EF494740) Blastocystis sp. NandII mitochondrion, complete g...    34   7.0    5
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    34   7.1    8
(AY811274) Schistosoma japonicum SJCHGC08371 protein mRNA, p...    36   7.1    2
(AC146695) Pan troglodytes clone rp43-48d2, complete sequence.     32   7.4    2
(AC073130) Homo sapiens BAC clone RP11-667F14 from 7, comple...    34   7.4    8
(BF299196) 063PbD12 Pb cDNA #20, Charles Yowell and Jane Car...    32   7.5    3
(CU856406) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.6    6
(BB970608) Plasmodium berghei str. ANKA cDNA clone: OK000248...    32   7.8    3
(AC117505) Homo sapiens 12 BAC RP11-162D11 (Roswell Park Can...    42   8.1    2
(EU427346) Yemmalysus parallelus mitochondrion, complete gen...    32   8.5    2
(AY380826) Lymphocystis disease virus - isolate China, compl...    32   8.6    11
(AM485954) Vitis vinifera contig VV78X111922.9, whole genome...    36   8.7    3
(AY518670) Drosophila simulans isolate KY007 mitochondrion, ...    32   9.1    5
(AC109143) Mus musculus chromosome 1, clone RP23-105D15, com...    36   9.1    8
(DQ234870) Pomatostomus temporalis clone Pte24 microsatellit...    38   9.3    2
(BS000089) Pan troglodytes chromosome 22 clone:PTB-054B14, m...    36   9.3    6
(CU914571) Phaseolus vulgaris sequence from BAC clone pva1-3...    36   9.4    7
(CV951192) PVrpvb_4915 zoospores, purified Phytophthora infe...    36   9.6    3
(EF640401) Libellula saturata 12S ribosomal RNA gene, partia...    36   9.7    2
(CT737185) Zebrafish DNA sequence from clone DKEY-267L4 in l...    32   9.8    10
(CR936486) Zebrafish DNA sequence from clone DKEY-279C17 in ...    42   9.8    4
(AF264673) Mannia capensis putative maturase (matK) gene, pa...    28   9.8    4
(AM430763) Vitis vinifera contig VV78X210156.5, whole genome...    40   9.9    4
(AM466719) Vitis vinifera contig VV78X268763.1, whole genome...    44   10.0   2
(EK374789) 1095469433624 Global-Ocean-Sampling_GS-31-01-01-1...    32   10.0   2

>(BJ410341) Dictyostelium discoideum cDNA clone:ddv12l06, 5' end,
            single read.
          Length = 642

 Score = 1269 bits (640), Expect = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Plus


Query: 560  aaattcaattggtactgtaagaggtgtatcatttaatagattattaaatttattagcagt 619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aaattcaattggtactgtaagaggtgtatcatttaatagattattaaatttattagcagt 60


Query: 620  ttgtacacatgattcaaatgtacgtttatataatttcaaaaaagatgataatgaaattga 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttgtacacatgattcaaatgtacgtttatataatttcaaaaaagatgataatgaaattga 120


Query: 680  atatcaatcttcattcccatcagtttcagattcaaaaattaatactattcaatgggcatt 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  atatcaatcttcattcccatcagtttcagattcaaaaattaatactattcaatgggcatt 180


Query: 740  agatcaaaaaactatcttggttggttgtcaaaatcaattggttgtttttaaagttgattc 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  agatcaaaaaactatcttggttggttgtcaaaatcaattggttgtttttaaagttgattc 240


Query: 800  tttacgttcatctttaactattacaactgataatatagtttcattaaattcattaaatga 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tttacgttcatctttaactattacaactgataatatagtttcattaaattcattaaatga 300


Query: 860  taatacagttgcttgtggttttacaaatggttttatttcaattattgatattaaatttgg 919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  taatacagttgcttgtggttttacaaatggttttatttcaattattgatattaaatttgg 360


Query: 920  tagtattattcaagattttagaaatcttcatgctccagttagatcaattcaagttaataa 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tagtattattcaagattttagaaatcttcatgctccagttagatcaattcaagttaataa 420


Query: 980  aaaaggtgatcaattctttgcatctggtgatgaagcaaccattgtatcatataataaatc 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aaaaggtgatcaattctttgcatctggtgatgaagcaaccattgtatcatataataaatc 480


Query: 1040 aagtggaaataataaatgggcattcagtggtcaacataaaagagatagtcatgatattaa 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  aagtggaaataataaatgggcattcagtggtcaacataaaagagatagtcatgatattaa 540


Query: 1100 atgtttagaaattacaaatactcatttaatctctggtggtaatagtactcaaatgatctt 1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  atgtttagaaattacaaatactcatttaatctctggtggtaatagtactcaaatgatctt 600


Query: 1160 ttatgatttatctaatttctcaagtttatcaaattcaaat 1199
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ttatgatttatctaatttctcaagtttatcaaattcaaat 640

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 2,057,955,769
Number of extensions: 134086994
Number of successful extensions: 12213893
Number of sequences better than 10.0: 343
Length of query: 1530
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1506
Effective length of database: 99,340,224,878
Effective search space: 149606378666268
Effective search space used: 149606378666268
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01876-1 (Contig-U01876-1Q) /CSM_Contig/Contig-U01876-1Q.Seq.d
         (1530 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_2814(AE014296|pid:none) Drosophila melanogaster chromos...    67   1e-09
AY069620_1(AY069620|pid:none) Drosophila melanogaster LD39110 fu...    67   2e-09
(O60161) RecName: Full=U3 small nucleolar RNA-associated protein...    66   4e-09
AB075868_1(AB075868|pid:none) Homo sapiens mRNA for KIAA1988 pro...    63   3e-08
AK074795_1(AK074795|pid:none) Homo sapiens cDNA FLJ90314 fis, cl...    63   3e-08
AK027634_1(AK027634|pid:none) Homo sapiens cDNA FLJ14728 fis, cl...    62   6e-08
CR859497_1(CR859497|pid:none) Pongo abelii mRNA; cDNA DKFZp459B1...    61   1e-07
(Q8R2N2) RecName: Full=Cirhin; AltName: Full=Testis-expressed ge...    60   2e-07
AK173318_1(AK173318|pid:none) Mus musculus mRNA for mKIAA1988 pr...    60   2e-07
AK340181_1(AK340181|pid:none) Acyrthosiphon pisum ACYPI000798 mR...    55   7e-06
AK340344_1(AK340344|pid:none) Acyrthosiphon pisum ACYPI003750 mR...    55   9e-06
(Q16K15) RecName: Full=Eukaryotic translation initiation factor ...    54   2e-05
AY745983_1(AY745983|pid:none) Aedes aegypti putative translation...    53   3e-05
(Q54MT0) RecName: Full=Eukaryotic translation initiation factor ...    51   1e-04
AH2154(AH2154) WD-repeat protein [imported] - Nostoc sp. (strain...    48   0.001
(B4LUA5) RecName: Full=Eukaryotic translation initiation factor ...    47   0.001
(B4GSH1) RecName: Full=Eukaryotic translation initiation factor ...    46   0.003
(Q7PP77) RecName: Full=Eukaryotic translation initiation factor ...    46   0.003
BT044683_1(BT044683|pid:none) Salmo salar clone ssal-rgf-002-287...    46   0.003
AC1842(AC1842) WD-40 repeat protein [imported] - Nostoc sp. (str...    46   0.003
(B4Q354) RecName: Full=Eukaryotic translation initiation factor ...    45   0.005
(Q7ZV55) RecName: Full=Eukaryotic translation initiation factor ...    45   0.005
(B3N4C7) RecName: Full=Eukaryotic translation initiation factor ...    45   0.005
(B3MVL6) RecName: Full=Eukaryotic translation initiation factor ...    45   0.007
CP000584_388(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    45   0.009
(B4N0L0) RecName: Full=Eukaryotic translation initiation factor ...    45   0.009
(Q1HPW4) RecName: Full=Eukaryotic translation initiation factor ...    45   0.009
FN392319_286(FN392319|pid:none) Pichia pastoris GS115 chromosome...    44   0.012
CP001037_1914(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    44   0.012
(B4KGX9) RecName: Full=Eukaryotic translation initiation factor ...    44   0.012
CR382123_550(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    44   0.012
CR548612_248(CR548612|pid:none) Paramecium tetraurelia macronucl...    44   0.021
AK027445_1(AK027445|pid:none) Homo sapiens cDNA FLJ14539 fis, cl...    44   0.021
AY232199_1(AY232199|pid:none) Drosophila yakuba clone yak-ad_Tri...    44   0.021
CU633438_263(CU633438|pid:none) Podospora anserina genomic DNA c...    43   0.027
AY080667_1(AY080667|pid:none) Arabidopsis thaliana unknown prote...    43   0.027
(Q55DA2) RecName: Full=Protein CIAO1 homolog;                          43   0.035
(B4GT01) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      43   0.035
(A5DVY3) RecName: Full=Eukaryotic translation initiation factor ...    43   0.035
(B4MU54) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      43   0.035
(Q29KQ0) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      43   0.035
CP001037_6(CP001037|pid:none) Nostoc punctiforme PCC 73102, comp...    43   0.035
CP001037_1323(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    42   0.046
BT076031_1(BT076031|pid:none) Caligus rogercresseyi clone crog-e...    42   0.046
(Q66J51) RecName: Full=Eukaryotic translation initiation factor ...    42   0.046
(B5FZ19) RecName: Full=Eukaryotic translation initiation factor ...    42   0.046
S33263(S33263;S45729;A54593)transcription initiation factor IID-...    42   0.060
(Q9VKQ3) RecName: Full=Ribosome biogenesis protein WDR12 homolog...    42   0.060
(P49846) RecName: Full=Transcription initiation factor TFIID sub...    42   0.060
(Q5AI86) RecName: Full=Eukaryotic translation initiation factor ...    42   0.078
CR382125_948(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    41   0.10
(B3N534) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      41   0.10
(B4P116) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      41   0.10
BC077844_1(BC077844|pid:none) Xenopus laevis WD repeat domain 5,...    41   0.10
CR380959_376(CR380959|pid:none) Candida glabrata strain CBS138 c...    41   0.10
CP001142_537(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    41   0.10
(Q5M786) RecName: Full=WD repeat-containing protein 5;  &BC08100...    41   0.13
(B4Q9T6) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      41   0.13
AG1889(AG1889) WD-40 repeat protein [imported] - Nostoc sp. (str...    41   0.13
AJ011376_1(AJ011376|pid:none) Homo sapiens mRNA for hypothetical...    41   0.13
CR940353_128(CR940353|pid:none) Theileria annulata strain Ankara...    41   0.13
CP000119_130(CP000119|pid:none) Anabaena variabilis ATCC 29413 p...    41   0.13
CP000393_3433(CP000393|pid:none) Trichodesmium erythraeum IMS101...    41   0.13
(Q2KIG2) RecName: Full=WD repeat-containing protein 5;  &BC11265...    41   0.13
(B4HWV6) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      41   0.13
BT074955_1(BT074955|pid:none) Osmerus mordax clone omor-rgc-504-...    41   0.13
AK144091_1(AK144091|pid:none) Mus musculus RCB-0559 K-1 . F1 cDN...    41   0.13
BC052124_1(BC052124|pid:none) Danio rerio WD repeat domain 5, mR...    41   0.13
CP001037_139(CP001037|pid:none) Nostoc punctiforme PCC 73102, co...    41   0.13
(Q5M7T1) RecName: Full=Protein CIAO1; AltName: Full=WD repeat-co...    40   0.17
AI2493(AI2493) WD-repeat protein [imported] - Nostoc sp. (strain...    40   0.23
(B3MJV8) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      40   0.23
(B4LS78) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      40   0.23
CU928170_698(CU928170|pid:none) Kluyveromyces thermotolerans str...    40   0.23
CP000117_2617(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    40   0.23
CP001332_106(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    40   0.30
AK315568_1(AK315568|pid:none) Homo sapiens cDNA, FLJ96640, highl...    40   0.30
BC027399_1(BC027399|pid:none) Mus musculus cirrhosis, autosomal ...    40   0.30
(A6ZMK5) RecName: Full=Eukaryotic translation initiation factor ...    40   0.30
AK027419_1(AK027419|pid:none) Homo sapiens cDNA FLJ14513 fis, cl...    40   0.30
BC000167_1(BC000167|pid:none) Homo sapiens, clone IMAGE:2900671,...    40   0.30
(Q5IH81) RecName: Full=Eukaryotic translation initiation factor ...    39   0.39
AY070059_1(AY070059|pid:none) Arabidopsis thaliana unknown prote...    39   0.39
CP000839_311(CP000839|pid:none) Acaryochloris marina MBIC11017 p...    39   0.39
CP001037_1143(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    39   0.39
AE014188_183(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.39
CU928175_464(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    39   0.39
AY888456_1(AY888456|pid:none) Synthetic construct Homo sapiens c...    39   0.39
(B0BNA7) RecName: Full=Eukaryotic translation initiation factor ...    39   0.39
AF147262_8(AF147262|pid:none) Arabidopsis thaliana BAC F28D6.  &...    39   0.51
AK172208_1(AK172208|pid:none) Mus musculus activated spleen cDNA...    39   0.51
(Q5E966) RecName: Full=Eukaryotic translation initiation factor ...    39   0.51
CP001037_6067(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    39   0.51
BA000045_2244(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    39   0.51
(Q9QZD9) RecName: Full=Eukaryotic translation initiation factor ...    39   0.51
CP000117_1553(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    39   0.51
(Q6P2Y2) RecName: Full=WD repeat-containing protein 69;  &BC0642...    39   0.51
AD1842(AD1842) WD-40 repeat protein [imported] - Nostoc sp. (str...    39   0.66
BX248416_6(BX248416|pid:none) Zebrafish DNA sequence from clone ...    39   0.66
AK002314_1(AK002314|pid:none) Mus musculus adult male kidney cDN...    39   0.66
(Q99KN2) RecName: Full=Protein CIAO1; AltName: Full=WD repeat-co...    39   0.66
AJ851771_1(AJ851771|pid:none) Gallus gallus mRNA for hypothetica...    39   0.66
BX649315_6(BX649315|pid:none) Zebrafish DNA sequence from clone ...    39   0.66
AK036064_1(AK036064|pid:none) Mus musculus 16 days neonate cereb...    38   0.87
(Q17BB0) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      38   0.87
(B0W517) RecName: Full=Ribosome biogenesis protein WDR12 homolog;      38   0.87
CP001291_1144(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    38   0.87
CP000502_174(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    38   0.87
AK098821_1(AK098821|pid:none) Homo sapiens cDNA FLJ25955 fis, cl...    38   1.1
CP000393_2151(CP000393|pid:none) Trichodesmium erythraeum IMS101...    38   1.1
AE013599_962(AE013599|pid:none) Drosophila melanogaster chromoso...    38   1.1
(Q8N136) RecName: Full=WD repeat-containing protein 69;  &AC0730...    38   1.1
AK301861_1(AK301861|pid:none) Homo sapiens cDNA FLJ54195 complet...    38   1.1
BT079708_1(BT079708|pid:none) Esox lucius clone eluc-evq-516-111...    38   1.1
AM910993_425(AM910993|pid:none) Plasmodium knowlesi strain H chr...    38   1.1
AL844505_66(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    38   1.1
CU928173_341(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    38   1.1
(A3LX18) RecName: Full=Eukaryotic translation initiation factor ...    38   1.1
FJ532265_1(FJ532265|pid:none) Gorilla gorilla isolate PR00573 tr...    37   1.5
AL590449_21(AL590449|pid:none) chromosome X of strain GB-M1 of E...    37   1.5
CP001100_2468(CP001100|pid:none) Chloroherpeton thalassium ATCC ...    37   1.5
(Q5R7R2) RecName: Full=Eukaryotic translation initiation factor ...    37   1.5
(Q9BZK7) RecName: Full=F-box-like/WD repeat-containing protein T...    37   1.9
AF268195_1(AF268195|pid:none) Mus musculus strain BALB/c IRA1 mR...    37   1.9
AP007164_475(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    37   1.9
(Q8BHJ5) RecName: Full=F-box-like/WD repeat-containing protein T...    37   1.9
AK022956_1(AK022956|pid:none) Homo sapiens cDNA FLJ12894 fis, cl...    37   1.9
AP009552_1527(AP009552|pid:none) Microcystis aeruginosa NIES-843...    37   1.9
CP000117_4784(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    37   1.9
CP000828_4370(CP000828|pid:none) Acaryochloris marina MBIC11017,...    37   2.5
BT011244_1(BT011244|pid:none) Arabidopsis thaliana At5g50230 mRN...    37   2.5
AL929352_24(AL929352|pid:none) Plasmodium falciparum strain 3D7,...    37   2.5
AB024031_8(AB024031|pid:none) Arabidopsis thaliana genomic DNA, ...    37   2.5
AE1810(AE1810) WD-40 repeat protein [imported] - Nostoc sp. (str...    37   2.5
DQ158856_14(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    37   2.5
AJ719937_1(AJ719937|pid:none) Gallus gallus mRNA for hypothetica...    37   2.5
AK016201_1(AK016201|pid:none) Mus musculus adult male testis cDN...    36   3.3
DQ405265_1(DQ405265|pid:none) Brassica rapa clone 299 pectineste...    36   3.3
CR812943_6(CR812943|pid:none) Zebrafish DNA sequence from clone ...    36   3.3
CR382136_870(CR382136|pid:none) Debaryomyces hansenii chromosome...    36   3.3
AY811481_1(AY811481|pid:none) Schistosoma japonicum SJCHGC05548 ...    36   3.3
FN317177_1(FN317177|pid:none) Schistosoma japonicum isolate Anhu...    36   3.3
(Q6BYU4) RecName: Full=Protein HIR1;  &CR382133_279(CR382133|pid...    36   3.3
CP000806_3916(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    36   4.3
FN392319_1439(FN392319|pid:none) Pichia pastoris GS115 chromosom...    36   4.3
AM910992_223(AM910992|pid:none) Plasmodium knowlesi strain H chr...    36   4.3
BT074059_1(BT074059|pid:none) Oncorhynchus mykiss clone omyk-evo...    36   4.3
AL929389_1(AL929389|pid:none) Zebrafish DNA sequence from clone ...    36   4.3
CP000393_3289(CP000393|pid:none) Trichodesmium erythraeum IMS101...    36   4.3
AL929389_2(AL929389|pid:none) Zebrafish DNA sequence from clone ...    36   4.3
(Q7SZM9) RecName: Full=F-box-like/WD repeat-containing protein T...    35   5.6
BC056790_1(BC056790|pid:none) Danio rerio zgc:63617, mRNA (cDNA ...    35   5.6
CP000393_4067(CP000393|pid:none) Trichodesmium erythraeum IMS101...    35   5.6
AE014134_2770(AE014134|pid:none) Drosophila melanogaster chromos...    35   5.6
CR382127_605(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    35   5.6
BC160737_1(BC160737|pid:none) Xenopus laevis nuclear receptor co...    35   5.6
AL772282_6(AL772282|pid:none) Mouse DNA sequence from clone RP23...    35   5.6
CP001034_337(CP001034|pid:none) Natranaerobius thermophilus JW/N...    35   5.6
FN357299_49(FN357299|pid:none) Schistosoma mansoni genome sequen...    35   5.6
BC123966_1(BC123966|pid:none) Xenopus tropicalis transducin (bet...    35   5.6
CP000807_36(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear ...    35   5.6
AM910988_111(AM910988|pid:none) Plasmodium knowlesi strain H chr...    35   7.3
AM910996_357(AM910996|pid:none) Plasmodium knowlesi strain H chr...    35   7.3
CP000117_2804(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   7.3
CU928168_665(CU928168|pid:none) Kluyveromyces thermotolerans str...    35   7.3
CP000117_2100(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   7.3
BT080765_1(BT080765|pid:none) Caligus clemensi clone ccle-evs-50...    35   7.3
BT080432_1(BT080432|pid:none) Caligus clemensi clone ccle-evs-52...    35   7.3
CP000236_22(CP000236|pid:none) Ehrlichia chaffeensis str. Arkans...    35   7.3
AY062623_1(AY062623|pid:none) Arabidopsis thaliana SOF1 protein-...    35   7.3
AJ002197_1(AJ002197|pid:none) Plasmodium falciparum coronin gene...    35   9.6
DQ395124_1(DQ395124|pid:none) Pichia pastoris methanol expressio...    35   9.6
AE016817_79(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    35   9.6
CP001037_4818(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    35   9.6
(Q06440) RecName: Full=Coronin-like protein;  &AY693023_1(AY6930...    35   9.6
(Q9BQ87) RecName: Full=F-box-like/WD repeat-containing protein T...    35   9.6
FJ527023_1(FJ527023|pid:none) Macaca mulatta transducin (beta)-l...    35   9.6
AM427690_1(AM427690|pid:none) Vitis vinifera contig VV78X071618....    35   9.6
AC003673_9(AC003673|pid:none) Arabidopsis thaliana chromosome 2 ...    35   9.6
CP001291_2528(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    35   9.6
(Q7K0L4) RecName: Full=WD repeat-containing protein 26 homolog; ...    35   9.6
AE014188_487(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.6
AK298210_1(AK298210|pid:none) Homo sapiens cDNA FLJ60756 complet...    35   9.6

>AE014296_2814(AE014296|pid:none) Drosophila melanogaster chromosome
            3L, complete sequence.  &BT044216_1(BT044216|pid:none)
          Length = 696

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 60/299 (20%), Positives = 127/299 (42%), Gaps = 12/299 (4%)
 Frame = +3

Query: 279  KVHHCSFSSWLPKPITSISYNQENNLIAVSRQESPLEIWIKNDQELILLKTLGGSKFDLP 458
            +VH+  F +  P+ I S++Y++ +  +A+SR    +E+W  N +    L  +     D
Sbjct: 16   QVHNVRFYTIKPREIVSLAYSKSSKCLALSRATPVIELW--NLEHAPYLDRVIHLPTDSH 73

Query: 459  IISVIWLNKTILLSTFENKFVIWDISSYSIIQELNSIG-TVRGVSFNRLLNLLAVCTHDS 635
            + S+ W    +       K + WD+       E +  G  +  +  N     +A+ + +
Sbjct: 74   VESIAWAGNRLFSVDLSGKLIEWDVIKLKQRYEHSPTGNALWSIDVNPAETDIAIGSEEG 133

Query: 636  NVRLYNFKKDDNEIEYQSSFPSVSDSKINTIQWALDQKTILVGCQNQLVVFKV--DSLRS 809
            ++ + + + D  EI Y+S F +    ++  I++      ++ G +  + ++ V   +
Sbjct: 134  HINILSIEND--EITYKSLF-NKQKGRVLCIKFDKTGTKLVTGTEGFVRIWNVLKGTTLH 190

Query: 810  SLTITTDNIV--SLNSLNDNTVACGFTNXXXXXXXXXXXXXXQDFRNLHAPVRSIQVNKK 983
            ++T++  N++  SL  L+DNT+  G +                  R L   V ++ VN K
Sbjct: 191  TMTLSEKNVIVWSLQVLSDNTIIAGDSAGFVTVWDADNATQIDSTRVLDKNVFALAVNNK 250

Query: 984  GDQFFASGDEATIVSY-------NKSSGNNKWAFSGQHKRDSHDIKCLEITNTHLISGG 1139
             D+   SG +  ++          + S + +W    Q     H +K L + +  + SGG
Sbjct: 251  EDRLVCSGMQPPLIRIFSKTKIKREESTSERWIKFLQRDAHKHYVKSLLVIDDQIYSGG 309

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,718,132,261
Number of extensions: 27756279
Number of successful extensions: 71810
Number of sequences better than 10.0: 183
Number of HSP's gapped: 71608
Number of HSP's successfully gapped: 214
Length of query: 510
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 377
Effective length of database: 620,718,517
Effective search space: 234010880909
Effective search space used: 234010880909
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.70  gvh: 0.34  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01876-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0