NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12066-1
Contig ID Contig-U12066-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Contig-U12066-1Q.Seq.d
TTTATTAATTCATCTTACTATTCTAAATCTTCTCTTATATTTGATGTAAT
TGATACACAAGTTTCATTTAATATGACTGAGAATTGGGTTTATAATGGAA
TGCTCCAAGCAATCTTAAATGGAAATGAAGTTTTTGAATACGGAAATATT
GAAATTGTTCCAATTTTAAATGTTTTCACGGTTCCAAATAATAACTTGGG
AACATCATACCCATTCGAAGCCACGATTGGAGGGTACCATTTTGATGCAT
CTTTAGTTGGTGCTGATATTCTAATGGATGGAAATAATATTACCAATTGT
AATGTAACATCGAGAGCAAATGATTTTCCAATTGGATATAGATGTTTAAT
ACCTCCAGGGGTTGGAAGCTTTAATATAACTGTAAAAGTTGCAAGTAAAA
TTTCAAAATTCATTAACTAAATGGTACAACCCCCCAAGATCGACAAGTAT
CGGATCCTGTATTTTCATTTTCTAATAGTTCAACGACAATTAGAGGAAAT
GATTTCCAAAGTGGTGCATCTGATAAAACAATTGTAACATTTGATGGTGT
TGAAGCAGAAGTTATTTCTTCATCATACGATTCAATAGTTGTTAAACATG
ACAATTCNNNNNNNNN----------CTATTTCAACGGTACATTTGAAAA
TGATTCAGTTCAAGTAGAATTAGATGTAACTTATTATAAAGATGAAGAAA
ATATTGATTTTGCAGGCGACTCAATTTTAATACCATCAAATTCAATGAAA
TATATAATTTTAATTTCAAATTGGAATTTTACATCATCAACAAATAATCT
ACAAGTAATTTATGATTCTCAAACAACAGCATACTATGATGATGGTTGTG
ATATTATTCAATCAAATAGTAGTTCAAATGTAAATGAAGGATCAAAAATT
TCAGAATCAGTTACATGGTTCCAAGTAGTATCTGGTAATTCTGCAATGGA
TGCAAAGTTTTCACGTAGAATGTTTGTTGATGAAAAAGTAAGAATGGCAA
GTGTTTCAATATTAGACCCAACTGATCCATTATATAGCTTAACAAATCGA
TCTGATACATTCAATAAATTAATTGCAATCACAACTCCATACTTTAAATC
AAATGTTAAATTAGATCCATCATTTAGTTCATTAATTCAACCATCAACAT
CAACATCAGAATGTGATGAAAATAAATGGAAAATCCCAGTAATCGCTGTT
TTGTGTTCAGTTGGAGGTGCCACTATAATTGGAATTTCCGCTGCAATGAT
TTACAAATCATAAAGAAATAAACAAATAGTTTTAAAACTCTCTTCAAAAT
TAAAAAATTTTAAATAATAAAATAAAATAAATAATAATTAAAAACGT
Gap gap included
Contig length 1337
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4867936
End point 4869262
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U12066
List of clone(s) 

est1=SHD485F,1,607
est2=SHD485Z,608,1329
est3=SHC415Z,609,1325
Translated Amino Acid sequence 
y*fillf*ifsyi*cn*ytsfi*yd*elgl*wnapsnlkwk*sf*irky*ncsnfkcfhg
sk**lgniipirshdwrvpf*cifswc*ysngwk*yyql*cniesk*fsnwi*mfntsrg
wkl*yncksck*nfkih*LNGTTPQDRQVSDPVFSFSNSSTTIRGNDFQSGASDKTIVTF
DGVEAEVISSSYDSIVVKHDNSXX---

---YFNGTFENDSVQVELDVTYYKDEENIDFAGDSILIPSNSMKYIILISNWNFTSSTNN
LQVIYDSQTTAYYDDGCDIIQSNSSSNVNEGSKISESVTWFQVVSGNSAMDAKFSRRMFV
DEKVRMASVSILDPTDPLYSLTNRSDTFNKLIAITTPYFKSNVKLDPSFSSLIQPSTSTS
ECDENKWKIPVIAVLCSVGGATIIGISAAMIYKS*rnkqivlklssklknfk**nkinnn
*kr
Translated Amino Acid sequence (All Frames) 
Frame A:
finssyysksslifdvidtqvsfnmtenwvyngmlqailngnevfeygnieivpilnvft
vpnnnlgtsypfeatiggyhfdaslvgadilmdgnnitncnvtsrandfpigyrclippg
vgsfnitvkvaskiskfin*mvqppkidkyrilyfhflivqrqleemiskvvhlikql*h
lmvlkqklflhhtiq*llnmtixxx---

---lfqryi*k*fsssrircnll*r*rky*fcrrlnfntikfneiynfnfklefyiink*
stsnl*fsnnsil**wl*yysik**fkck*riknfrisymvpssiw*fcngckvft*nvc
**kskngkcfnirpn*sii*lnksi*yiq*incnhnsil*ikc*irsii*finstinini
rm**k*menpsnrcfvfswrchynwnfrcndlqiikk*tnsfktlfkikkf*iik*nk**
lkt

Frame B:
llihltilnlllylm*lihkfhli*lrigfimecskqs*memkflnteilklfqf*mfsr
fqiitwehhthskprlegtilmhl*lvlif*wmeiilpivm*hreqmifqldidv*ylqg
leali*l*klqvkfqnsltkwynpprstsigscifif**fndn*rk*fpkwci**nncni
*wc*srsyffiirfnsc*t*qfxxx---

---YFNGTFENDSVQVELDVTYYKDEENIDFAGDSILIPSNSMKYIILISNWNFTSSTNN
LQVIYDSQTTAYYDDGCDIIQSNSSSNVNEGSKISESVTWFQVVSGNSAMDAKFSRRMFV
DEKVRMASVSILDPTDPLYSLTNRSDTFNKLIAITTPYFKSNVKLDPSFSSLIQPSTSTS
ECDENKWKIPVIAVLCSVGGATIIGISAAMIYKS*rnkqivlklssklknfk**nkinnn
*kr

Frame C:
y*fillf*ifsyi*cn*ytsfi*yd*elgl*wnapsnlkwk*sf*irky*ncsnfkcfhg
sk**lgniipirshdwrvpf*cifswc*ysngwk*yyql*cniesk*fsnwi*mfntsrg
wkl*yncksck*nfkih*LNGTTPQDRQVSDPVFSFSNSSTTIRGNDFQSGASDKTIVTF
DGVEAEVISSSYDSIVVKHDNSXX---

---istvhlkmiqfk*n*m*liikmkkililqatqf*yhqiq*ni*f*fqigilhhqqii
yk*fmilkqqhtmmmvvilfnqivvqm*mkdqkfqnqlhgsk*ylvilqwmqsfhvecll
mkk*ewqvfqy*tqlihyia*qidlihsin*lqsqlhtlnqmln*ihhlvh*fnhqhqhq
nvmkingksq*slfcvqlevpl*lefplq*ftnhkeink*f*nslqn*kilnnkik*iii
kn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12066-1 (Contig-U12066-1Q)
/CSM_Contig/Contig-U12066-1Q.Seq.d
         (1347 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Conti...  1326  0.0
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11193-1 (Contig-U11193-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U06322-1 (Contig-U06322-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14515-1 (Contig-U14515-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14343-1 (Contig-U14343-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14064-1 (Contig-U14064-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U11686-1 (Contig-U11686-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U11216-1 (Contig-U11216-1Q) /CSM_Contig/Conti...    36  0.095

>Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Contig-U12066-1Q.Seq.d
          Length = 1347

 Score = 1326 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Plus

                                                                        
Query: 627  ctatttcaacggtacatttgaaaatgattcagttcaagtagaattagatgtaacttatta 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  ctatttcaacggtacatttgaaaatgattcagttcaagtagaattagatgtaacttatta 686

                                                                        
Query: 687  taaagatgaagaaaatattgattttgcaggcgactcaattttaataccatcaaattcaat 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  taaagatgaagaaaatattgattttgcaggcgactcaattttaataccatcaaattcaat 746

                                                                        
Query: 747  gaaatatataattttaatttcaaattggaattttacatcatcaacaaataatctacaagt 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  gaaatatataattttaatttcaaattggaattttacatcatcaacaaataatctacaagt 806

                                                                        
Query: 807  aatttatgattctcaaacaacagcatactatgatgatggttgtgatattattcaatcaaa 866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  aatttatgattctcaaacaacagcatactatgatgatggttgtgatattattcaatcaaa 866

                                                                        
Query: 867  tagtagttcaaatgtaaatgaaggatcaaaaatttcagaatcagttacatggttccaagt 926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  tagtagttcaaatgtaaatgaaggatcaaaaatttcagaatcagttacatggttccaagt 926

                                                                        
Query: 927  agtatctggtaattctgcaatggatgcaaagttttcacgtagaatgtttgttgatgaaaa 986
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  agtatctggtaattctgcaatggatgcaaagttttcacgtagaatgtttgttgatgaaaa 986

                                                                        
Query: 987  agtaagaatggcaagtgtttcaatattagacccaactgatccattatatagcttaacaaa 1046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  agtaagaatggcaagtgtttcaatattagacccaactgatccattatatagcttaacaaa 1046

                                                                        
Query: 1047 tcgatctgatacattcaataaattaattgcaatcacaactccatactttaaatcaaatgt 1106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 tcgatctgatacattcaataaattaattgcaatcacaactccatactttaaatcaaatgt 1106

                                                                        
Query: 1107 taaattagatccatcatttagttcattaattcaaccatcaacatcaacatcagaatgtga 1166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 taaattagatccatcatttagttcattaattcaaccatcaacatcaacatcagaatgtga 1166

                                                                        
Query: 1167 tgaaaataaatggaaaatcccagtaatcgctgttttgtgttcagttggaggtgccactat 1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 tgaaaataaatggaaaatcccagtaatcgctgttttgtgttcagttggaggtgccactat 1226

                                                                        
Query: 1227 aattggaatttccgctgcaatgatttacaaatcataaagaaataaacaaatagttttaaa 1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 aattggaatttccgctgcaatgatttacaaatcataaagaaataaacaaatagttttaaa 1286

                     
Query: 1287 actctcttc 1295
            |||||||||
Sbjct: 1287 actctcttc 1295


 Score = 1203 bits (607), Expect = 0.0
 Identities = 607/607 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattaattcatcttactattctaaatcttctcttatatttgatgtaattgatacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttattaattcatcttactattctaaatcttctcttatatttgatgtaattgatacacaa 60

                                                                       
Query: 61  gtttcatttaatatgactgagaattgggtttataatggaatgctccaagcaatcttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtttcatttaatatgactgagaattgggtttataatggaatgctccaagcaatcttaaat 120

                                                                       
Query: 121 ggaaatgaagtttttgaatacggaaatattgaaattgttccaattttaaatgttttcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaaatgaagtttttgaatacggaaatattgaaattgttccaattttaaatgttttcacg 180

                                                                       
Query: 181 gttccaaataataacttgggaacatcatacccattcgaagccacgattggagggtaccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttccaaataataacttgggaacatcatacccattcgaagccacgattggagggtaccat 240

                                                                       
Query: 241 tttgatgcatctttagttggtgctgatattctaatggatggaaataatattaccaattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttgatgcatctttagttggtgctgatattctaatggatggaaataatattaccaattgt 300

                                                                       
Query: 301 aatgtaacatcgagagcaaatgattttccaattggatatagatgtttaatacctccaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgtaacatcgagagcaaatgattttccaattggatatagatgtttaatacctccaggg 360

                                                                       
Query: 361 gttggaagctttaatataactgtaaaagttgcaagtaaaatttcaaaattcattaactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttggaagctttaatataactgtaaaagttgcaagtaaaatttcaaaattcattaactaa 420

                                                                       
Query: 421 atggtacaaccccccaagatcgacaagtatcggatcctgtattttcattttctaatagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atggtacaaccccccaagatcgacaagtatcggatcctgtattttcattttctaatagtt 480

                                                                       
Query: 481 caacgacaattagaggaaatgatttccaaagtggtgcatctgataaaacaattgtaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caacgacaattagaggaaatgatttccaaagtggtgcatctgataaaacaattgtaacat 540

                                                                       
Query: 541 ttgatggtgttgaagcagaagttatttcttcatcatacgattcaatagttgttaaacatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgatggtgttgaagcagaagttatttcttcatcatacgattcaatagttgttaaacatg 600

                  
Query: 601 acaattc 607
           |||||||
Sbjct: 601 acaattc 607


>Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Contig-U11414-1Q.Seq.d
          Length = 1931

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 533  tgtaacatttgatggtgttg 552
            ||||||||||||||||||||
Sbjct: 1415 tgtaacatttgatggtgttg 1396


>Contig-U11193-1 (Contig-U11193-1Q) /CSM_Contig/Contig-U11193-1Q.Seq.d
          Length = 1395

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 686 ataaagatgaagaaaatatt 705
           ||||||||||||||||||||
Sbjct: 431 ataaagatgaagaaaatatt 450


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,971
Number of Sequences: 6905
Number of extensions: 21971
Number of successful extensions: 2667
Number of sequences better than 10.0: 315
length of query: 1347
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1331
effective length of database: 5,564,391
effective search space: 7406204421
effective search space used: 7406204421
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA 
Query= Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Contig-U12066-1Q.Seq.d
         (1347 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ405188) Dictyostelium discoideum cDNA clone:dds30j22, 3' ...  1245   0.0    1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...  1237   0.0    1
(BJ404329) Dictyostelium discoideum cDNA clone:dds28n04, 3' ...  1235   0.0    1
(BJ393307) Dictyostelium discoideum cDNA clone:dds30j22, 5' ...  1203   0.0    1
(AC022430) Homo sapiens chromosome 5 clone CTD-2581L3, compl...    44   6e-04  5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   0.054  12
(AC007394) Homo sapiens BAC clone RP11-489G12 from 2, comple...    52   0.056  1
(AL645686) Mouse DNA sequence from clone RP23-330D1 on chrom...    50   0.22   1
(AE006904) Sulfolobus solfataricus P2 section 263 of 272 of ...    50   0.22   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.22   17
(AC121671) Rattus norvegicus clone CH230-103L20, *** SEQUENC...    38   0.47   2
(AC110958) Rattus norvegicus clone CH230-190M22, *** SEQUENC...    38   0.47   2
(AC206123) Saccoglossus kowalevskii clone CUGI_SK_BA 001B14,...    40   0.70   7
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.79   19
(AL672240) Mouse DNA sequence from clone RP23-27I16 on chrom...    48   0.87   1
(AC022317) Homo sapiens BAC clone RP11-104A24 from 4, comple...    48   0.87   1
(AC123707) Mus musculus clone RP23-362I8, WORKING DRAFT SEQU...    48   0.87   1
(AC163487) Mus musculus chromosome 1 clone RP23-209D19 map 1...    48   0.87   1
(EI709929) IGBR11J10TF BAC library from the recurrent gliobl...    48   0.87   1
(DU793666) APKH5124.b2 HF770_12-21-03 uncultured marine micr...    48   0.87   1
(EK571148) 1095521078611 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.0    2
(CU329691) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.1    5
(CQ870327) Sequence 748 from Patent WO2004074320.                  40   1.1    5
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   1.5    11
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   1.6    10
(AC091823) Homo sapiens chromosome 5 clone CTC-417G23, compl...    40   1.8    5
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   1.8    23
(EJ585614) 1092961014587 Global-Ocean-Sampling_GS-29-01-01-1...    44   2.1    2
(BH161356) ENTTN34TR Entamoeba histolytica Sheared DNA Entam...    32   2.9    3
(CZ172306) MIAA-12O15c.b1 Meloidogyne incognita BAC end sequ...    38   3.0    2
(CU469304) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.2    7
(AC073313) Homo sapiens chromosome 7 clone RP11-110B16, WORK...    36   3.4    6
(CR385074) Zebrafish DNA sequence from clone CH211-258K6 in ...    46   3.4    1
(AC123819) Mus musculus BAC clone RP23-460M11 from chromosom...    46   3.4    1
(AC122839) Mus musculus BAC clone RP23-193K9 from 8, complet...    46   3.4    1
(AC206363) Pan troglodytes chromosome X clone CH251-30B20 ma...    46   3.4    1
(CQ588914) Sequence 16672 from Patent WO0171042.                   46   3.4    1
(AR515194) Sequence 20154 from patent US 6703491.                  46   3.4    1
(AR499912) Sequence 4872 from patent US 6703491.                   46   3.4    1
(DQ133094) Phtiridium fraterna cytochrome oxidase subunit II...    46   3.4    1
(BT023512) Drosophila melanogaster LD05845 full insert cDNA.       46   3.4    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    46   3.4    1
(AC008194) Drosophila melanogaster clone BACR49A05, complete...    46   3.4    1
(AL441923) Human DNA sequence from clone RP11-104D21 on chro...    46   3.4    1
(AC027779) Homo sapiens chromosome 11, clone RP11-98J9, comp...    46   3.4    1
(AC098673) Rattus norvegicus clone CH230-35I14, *** SEQUENCI...    46   3.4    1
(CU862001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.4    1
(AC026996) Homo sapiens chromosome 11 clone RP11-588H14 map ...    46   3.4    1
(AC018220) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   3.4    1
(AZ524140) 227PbG04 Pb MBN #21 Plasmodium berghei genomic 3'...    46   3.4    1
(AZ092824) RPCI-23-460M11.TJ RPCI-23 Mus musculus genomic cl...    46   3.4    1
(AZ066307) RPCI-23-419E18.TJ RPCI-23 Mus musculus genomic cl...    46   3.4    1
(EK557359) 1095518004140 Global-Ocean-Sampling_GS-32-01-01-1...    46   3.4    1
(AQ246357) HS_2061_B2_C01_T7 CIT Approved Human Genomic Sper...    46   3.4    1
(AM627931) Entamoeba dispar GSS, clone dispar25g12.p1k.            46   3.4    1
(EJ223133) 1092351297795 Global-Ocean-Sampling_GS-27-01-01-1...    46   3.4    1
(CU002123) Equus caballus GSS, BAC clone CH241-67P8, SP6 end...    46   3.4    1
(CT208698) Sus scrofa genomic clone CH242-80J14, genomic sur...    46   3.4    1
(AG906083) Oryza sativa Indica Group genomic DNA, BAC end se...    46   3.4    1
(EC263777) 523911 MN08 Drosophila melanogaster cDNA clone 29...    46   3.4    1
(CO154592) EN04428.5prime Exelixis FlyTag MN08 BlueScript Dr...    46   3.4    1
(BI639459) SD22037.3prime SD Drosophila melanogaster Schneid...    46   3.4    1
(BI355244) GM30079.5prime GM Drosophila melanogaster ovary p...    46   3.4    1
(BB973208) Plasmodium berghei strain ANKA cDNA clone:OK00297...    46   3.4    1
(FC813112) Sr_pASP6_013b13_SP6 S. ratti mixed stage pAMP Str...    46   3.4    1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    46   3.4    1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    46   3.4    1
(CP000728) Clostridium botulinum F str. Langeland, complete ...    46   3.4    1
(CP000727) Clostridium botulinum A str. Hall, complete genome.     46   3.4    1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    46   3.4    1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    46   3.4    1
(AC170318) Bos taurus clone CH240-261G4, WORKING DRAFT SEQUE...    36   3.6    7
(AY232267) Dictyostelium discoideum putative protein Roco5 (...    38   3.7    3
(AC110915) Mus musculus clone RP24-405F22, WORKING DRAFT SEQ...    36   3.8    6
(EJ172500) 1092344088267 Global-Ocean-Sampling_GS-27-01-01-1...    36   4.4    2
(DU346804) 1098313114951 CHORI-243 Ovis aries genomic clone ...    34   5.0    3
(AE015927) Clostridium tetani E88, complete genome.                34   5.2    2
(DR713869) Le_lv0_08h12_SP6 Little Skate Liver, Normalized L...    36   5.5    3
(AC123693) Mus musculus chromosome 3, clone RP23-326F23, com...    38   5.5    8
(AC016631) Homo sapiens chromosome 5 clone RP11-100G13, WORK...    44   6.0    5
(AC163491) Mus musculus chromosome 7, clone RP24-176N8, comp...    34   6.0    7
(DR713761) Le_lv0_07g04_SP6 Little Skate Liver, Normalized L...    36   6.3    3
(AL161589) Arabidopsis thaliana DNA chromosome 4, contig fra...    32   6.3    2
(Z99708) Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 c...    32   6.3    2
(CU062659) M.truncatula DNA sequence from clone MTH2-14C23 o...    34   6.4    7
(AC005169) Arabidopsis thaliana chromosome 2 clone F6F22 map...    32   6.7    9
(AC163218) Mus musculus chromosome 7, clone RP24-102H24, com...    32   7.4    8
(AL645787) Zebrafish DNA sequence from clone BUSM1-39L02 Con...    34   8.1    5
(FK922183) EST_lsal_evj_937143 lsalevj mixed_tissue_mixed_st...    36   8.3    3
(AM656445) Entamoeba moshkovskii FIC GSS, clone mosh039e11.q1k.    42   8.6    2
(CC052328) SALK_016303.35.80.x Arabidopsis thaliana TDNA ins...    32   8.8    2
(CC052324) SALK_016274.52.85.x Arabidopsis thaliana TDNA ins...    32   8.8    2
(FK922184) EST_lsal_evj_953271 lsalevj mixed_tissue_mixed_st...    36   9.1    3
(AK139065) Mus musculus 7 days neonate cerebellum cDNA, RIKE...    42   9.5    2
(AK042629) Mus musculus 7 days neonate cerebellum cDNA, RIKE...    42   9.5    2
(EY943587) RS3DI33JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    42   9.5    2

>(BJ405188) Dictyostelium discoideum cDNA clone:dds30j22, 3' end,
            single read.
          Length = 722

 Score = 1245 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Minus


Query: 627  ctatttcaacggtacatttgaaaatgattcagttcaagtagaattagatgtaacttatta 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  ctatttcaacggtacatttgaaaatgattcagttcaagtagaattagatgtaacttatta 663


Query: 687  taaagatgaagaaaatattgattttgcaggcgactcaattttaataccatcaaattcaat 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  taaagatgaagaaaatattgattttgcaggcgactcaattttaataccatcaaattcaat 603


Query: 747  gaaatatataattttaatttcaaattggaattttacatcatcaacaaataatctacaagt 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  gaaatatataattttaatttcaaattggaattttacatcatcaacaaataatctacaagt 543


Query: 807  aatttatgattctcaaacaacagcatactatgatgatggttgtgatattattcaatcaaa 866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aatttatgattctcaaacaacagcatactatgatgatggttgtgatattattcaatcaaa 483


Query: 867  tagtagttcaaatgtaaatgaaggatcaaaaatttcagaatcagttacatggttccaagt 926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  tagtagttcaaatgtaaatgaaggatcaaaaatttcagaatcagttacatggttccaagt 423


Query: 927  agtatctggtaattctgcaatggatgcaaagttttcacgtagaatgtttgttgatgaaaa 986
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  agtatctggtaattctgcaatggatgcaaagttttcacgtagaatgtttgttgatgaaaa 363


Query: 987  agtaagaatggcaagtgtttcaatattagacccaactgatccattatatagcttaacaaa 1046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  agtaagaatggcaagtgtttcaatattagacccaactgatccattatatagcttaacaaa 303


Query: 1047 tcgatctgatacattcaataaattaattgcaatcacaactccatactttaaatcaaatgt 1106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  tcgatctgatacattcaataaattaattgcaatcacaactccatactttaaatcaaatgt 243


Query: 1107 taaattagatccatcatttagttcattaattcaaccatcaacatcaacatcagaatgtga 1166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  taaattagatccatcatttagttcattaattcaaccatcaacatcaacatcagaatgtga 183


Query: 1167 tgaaaataaatggaaaatcccagtaatcgctgttttgtgttcagttggaggtgccactat 1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  tgaaaataaatggaaaatcccagtaatcgctgttttgtgttcagttggaggtgccactat 123


Query: 1227 aattggaatttccgctgcaatgatttac 1254
            ||||||||||||||||||||||||||||
Sbjct: 122  aattggaatttccgctgcaatgatttac 95

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,583,551,539
Number of extensions: 96025900
Number of successful extensions: 8310900
Number of sequences better than 10.0: 99
Length of query: 1347
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1323
Effective length of database: 97,308,875,965
Effective search space: 128739642901695
Effective search space used: 128739642901695
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12066-1 (Contig-U12066-1Q) /CSM_Contig/Contig-U12066-1Q.Seq.d
         (1347 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...    76   3e-12
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...    73   2e-11
AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosom...    72   6e-11
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    70   2e-10
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    69   5e-10
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...    65   4e-09
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...    64   1e-08
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...    62   5e-08
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...    62   5e-08
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    62   5e-08
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    62   6e-08
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...    61   8e-08
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    60   1e-07
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...    59   4e-07
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    59   4e-07
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    58   9e-07
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    58   9e-07
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...    56   3e-06
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    55   4e-06
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...    55   6e-06
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    39   0.33
CP001399_493(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ...    38   0.96
CP000498_214(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    37   1.3
AE016823_3137(AE016823|pid:none) Leptospira interrogans serovar ...    36   2.8
AE010300_4043(AE010300|pid:none) Leptospira interrogans serovar ...    36   2.8
CP000115_3025(CP000115|pid:none) Nitrobacter winogradskyi Nb-255...    36   3.6
AE017308_91(AE017308|pid:none) Mycoplasma mobile 163K complete g...    36   3.6
AB073932_1(AB073932|pid:none) Aspergillus oryzae chsA mRNA for c...    35   6.2
CP000124_1175(CP000124|pid:none) Burkholderia pseudomallei 1710b...    35   8.1
CP000570_1023(CP000570|pid:none) Burkholderia pseudomallei 668 c...    35   8.1
CP000010_596(CP000010|pid:none) Burkholderia mallei ATCC 23344 c...    35   8.1
CP001408_1018(CP001408|pid:none) Burkholderia pseudomallei MSHR3...    35   8.1

>AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosome 2
            map 4915084-5005461 strain AX4, complete sequence.
          Length = 1406

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 49/173 (28%), Positives = 90/173 (52%)
 Frame = +1

Query: 640  TFENDSVQVELDVTYYKDEENIDFAGDSILIPSNSMKYIILISNWNFTSSTNNLQVIYDS 819
            T  N++  V   + ++     I FA +++ +  +++KY I IS +NF  + NNLQ+I  +
Sbjct: 1181 TINNNNTNVTATLEWFNKSTTIQFANENLEMNPSTIKYSIEISQYNFKQNLNNLQLIMFA 1240

Query: 820  QTTAYYDDGCDIIQSNSSSNVNEGSKISESVTWFQVVSGNSAMDAKFSRRMFVDEKVRMA 999
               A  D   DI  S    N + G    ++  + ++   N ++  +F +R  +D+KV
Sbjct: 1241 SFDA-SDPPKDICSSKQFGNTSTG----DNSNYIKIQIDNHSLYGRFIKRAIIDDKVYSI 1295

Query: 1000 SVSILDPTDPLYSLTNRSDTFNKLIAITTPYFKSNVKLDPSFSSLIQPSTSTS 1158
               +LD +  L S++N S +    I IT P++K+ V +DP FS L+  ++ +S
Sbjct: 1296 ENQLLDSS--LNSISN-SSSVQSYIGITIPFYKNYVVVDPDFSVLVDSNSVSS 1345

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,975,279,658
Number of extensions: 39862370
Number of successful extensions: 101239
Number of sequences better than 10.0: 32
Number of HSP's gapped: 101172
Number of HSP's successfully gapped: 32
Length of query: 449
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 317
Effective length of database: 623,955,076
Effective search space: 197793759092
Effective search space used: 197793759092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.72  gvh: 0.51  alm: 0.26  top: 0.67  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U12066-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0