Contig-U12059-1 |
Contig ID |
Contig-U12059-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1679 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
18 |
Number of EST |
25 |
Link to clone list |
U12059 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12059-1 (Contig-U12059-1Q) /CSM_Contig/Contig-U12059-1Q.Seq.d (1689 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ372429) Dictyostelium discoideum cDNA clone:ddc12g17, 3' ... 648 0.0 3 (BJ377472) Dictyostelium discoideum cDNA clone:ddc24o16, 3' ... 396 0.0 4 (BJ375878) Dictyostelium discoideum cDNA clone:ddc20j10, 3' ... 396 0.0 4 (BJ374136) Dictyostelium discoideum cDNA clone:ddc6n13, 3' e... 396 0.0 5 (BJ359051) Dictyostelium discoideum cDNA clone:ddc12g17, 5' ... 662 0.0 3 (BJ401347) Dictyostelium discoideum cDNA clone:dds22o24, 3' ... 396 0.0 5 (BJ400537) Dictyostelium discoideum cDNA clone:dds13m14, 3' ... 494 0.0 2 (BJ400189) Dictyostelium discoideum cDNA clone:dds9l04, 3' e... 396 0.0 5 (BJ399029) Dictyostelium discoideum cDNA clone:dds3o14, 3' e... 396 0.0 4 (C92939) Dictyostelium discoideum slug cDNA, clone SSF122. 436 0.0 3 (BJ373774) Dictyostelium discoideum cDNA clone:ddc4m23, 3' e... 396 0.0 5 (BJ402992) Dictyostelium discoideum cDNA clone:dds18o22, 3' ... 692 0.0 3 (BJ387610) Dictyostelium discoideum cDNA clone:dds3o14, 5' e... 779 0.0 2 (BJ360199) Dictyostelium discoideum cDNA clone:ddc4m23, 5' e... 779 0.0 1 (BJ389492) Dictyostelium discoideum cDNA clone:dds18o22, 5' ... 765 0.0 1 (BJ360916) Dictyostelium discoideum cDNA clone:ddc8e13, 5' e... 686 0.0 1 (BJ388357) Dictyostelium discoideum cDNA clone:dds9l04, 5' e... 630 e-176 1 (BJ404837) Dictyostelium discoideum cDNA clone:dds29d23, 3' ... 400 e-175 5 (BJ362123) Dictyostelium discoideum cDNA clone:ddc20j10, 5' ... 624 e-174 1 (BJ391396) Dictyostelium discoideum cDNA clone:dds13m14, 5' ... 589 e-163 1 (BJ390582) Dictyostelium discoideum cDNA clone:dds22o24, 5' ... 579 e-160 1 (AU073436) Dictyostelium discoideum slug cDNA, clone SSH192. 460 e-125 1 (AU073899) Dictyostelium discoideum slug cDNA, clone SSI668. 208 2e-89 2 (BJ360550) Dictyostelium discoideum cDNA clone:ddc6n13, 5' e... 240 1e-58 1 (AU038042) Dictyostelium discoideum slug cDNA, clone SSH192. 196 2e-45 1 (BJ393013) Dictyostelium discoideum cDNA clone:dds29d23, 5' ... 121 1e-39 3 (AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 42 2e-12 16 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 42 1e-10 19 (AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 40 5e-10 17 (EU024653) Polistes sp. MD1 mitochondrion, partial genome. 38 6e-10 9 (AU072802) Dictyostelium discoideum slug cDNA, clone SSF122. 60 2e-09 2 (CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 36 2e-09 20 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 38 5e-09 18 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 9e-09 17 (AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 48 9e-09 16 (AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 38 9e-09 18 (AL035476) Plasmodium falciparum MAL4P3. 40 1e-08 15 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 2e-08 17 (CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 38 2e-08 14 (AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 38 3e-08 15 (AL844509) Plasmodium falciparum chromosome 13. 42 4e-08 13 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 4e-08 19 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 5e-08 20 (DD010735) Diagnosis of known genetic Parameters within the ... 40 6e-08 12 (AL844506) Plasmodium falciparum chromosome 7. 44 7e-08 15 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 7e-08 17 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 1e-07 19 (AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 1e-07 18 (AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 3e-07 17 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 3e-07 18 (AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 3e-07 12 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 3e-07 15 (AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 3e-07 18 (AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 3e-07 19 (AL031745) Plasmodium falciparum DNA from MAL1P2. 38 3e-07 15 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 46 4e-07 18 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 4e-07 16 (AL034557) Plasmodium falciparum MAL4P1. 36 4e-07 16 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 38 4e-07 18 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 4e-07 14 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 6e-07 16 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 6e-07 17 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 7e-07 14 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 8e-07 13 (AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 8e-07 19 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 46 1e-06 14 (CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 38 2e-06 20 (AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 38 2e-06 16 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 2e-06 13 (Z98551) Plasmodium falciparum MAL3P6. 38 2e-06 14 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 2e-06 16 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 3e-06 15 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 3e-06 21 (AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 38 3e-06 14 (AC117073) Dictyostelium discoideum chromosome 2 map 6045872... 42 3e-06 9 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 3e-06 16 (AF310896) Dictyostelium discoideum RacJ (racJ) gene, comple... 32 3e-06 8 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 3e-06 16 (AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 36 4e-06 17 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 46 5e-06 11 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 40 5e-06 20 (CS468877) Sequence 68 from Patent EP1748080. 38 5e-06 18 (CS419354) Sequence 68 from Patent WO2006094836. 38 5e-06 18 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 40 6e-06 15 (AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 36 6e-06 16 (AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 38 7e-06 14 (AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 7e-06 16 (AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 36 8e-06 18 (AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 38 8e-06 13 (AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 9e-06 17 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 9e-06 18 (AL034558) Plasmodium falciparum MAL3P2. 38 1e-05 15 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 1e-05 14 (CS468878) Sequence 69 from Patent EP1748080. 38 2e-05 18 (CS419355) Sequence 69 from Patent WO2006094836. 38 2e-05 18 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 2e-05 15 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 36 2e-05 15 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 38 2e-05 16 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 38 2e-05 14 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 38 2e-05 15
>(BJ372429) Dictyostelium discoideum cDNA clone:ddc12g17, 3' end, single read. Length = 673
Score = 648 bits (327), Expect(3) = 0.0 Identities = 327/327 (100%) Strand = Plus / Minus
Query: 1001 tttttaaataaatataaatcatttgaaggttcgttatataatattgcattttcagatcgt 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 tttttaaataaatataaatcatttgaaggttcgttatataatattgcattttcagatcgt 555
Query: 1061 ttaccaggtttagaaaattattataaagaaagattattaaatgtattgaataatcgttat 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 ttaccaggtttagaaaattattataaagaaagattattaaatgtattgaataatcgttat 495
Query: 1121 aatgaattaaaagtcggtggtattttttcatgtaatattttgattgaagaagatcaaggt 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 aatgaattaaaagtcggtggtattttttcatgtaatattttgattgaagaagatcaaggt 435
Query: 1181 agtgaaaatgaacaaaaaagtaaatcaagttattattgtatggtaaatgttaaagaaatt 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 agtgaaaatgaacaaaaaagtaaatcaagttattattgtatggtaaatgttaaagaaatt 375
Query: 1241 cttagagaaatgagttatgaatcaattttatcaagagaagaagtcgaaaatatgattgtt 1300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 cttagagaaatgagttatgaatcaattttatcaagagaagaagtcgaaaatatgattgtt 315
Query: 1301 ccattcgtacatttaactagaaatgaa 1327 ||||||||||||||||||||||||||| Sbjct: 314 ccattcgtacatttaactagaaatgaa 288
Score = 406 bits (205), Expect(3) = 0.0 Identities = 259/277 (93%) Strand = Plus / Minus
Query: 1329 tatcaatatgcaattgataaatcaactaataatacaggtctaaaattaatttatgaaaat 1388 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 287 tatcaatatgcaattgataaatcaactaataatactggtctaaaattaatttatgaaaat 228
Query: 1389 agaataacatctaattgggctgatagttctcgagatgatgaatcttttgttggctcactt 1448 | |||||| ||||||||||||||| | || ||||||| |||| ||| |||| |||||| Sbjct: 227 aaaataactactaattgggctgatactcatcaagatgataaatcatttattggttcactt 168
Query: 1449 attgcatttattggtaatttcattaaaaatgctattaatggtgataagaatagagttgat 1508 ||| || ||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 167 atttcaattattggacattctattaaaaatgctattaatggtgataagaatagagttgat 108
Query: 1509 tcaatattcaatgattttgaacaacgtcttcatttaaaatataaattaaatccaaacgat 1568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107 tcaatattcaatgattttgaacaacgtcttcatttaaaatataaattaaatccaaacgat 48
Query: 1569 ttccaatttcatgtttgtaatttatatttatcatttt 1605 ||||||||||||||||||||||||||||||||||||| Sbjct: 47 ttccaatttcatgtttgtaatttatatttatcatttt 11
Score = 127 bits (64), Expect(3) = 0.0 Identities = 64/64 (100%) Strand = Plus / Minus
Query: 941 tagtaccagataattcaattgattttatattttcatttacaactttacattgggtaccat 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 tagtaccagataattcaattgattttatattttcatttacaactttacattgggtaccat 614
Query: 1001 tttt 1004 |||| Sbjct: 613 tttt 610
Score = 60.0 bits (30), Expect = 3e-04 Identities = 47/54 (87%) Strand = Plus / Plus
Query: 144 aaaangataaatataaattncaaagatgaaatnggaaatcattcggattnaatt 197 |||| |||||||||||||| |||| ||||||| ||||||| || ||||| |||| Sbjct: 11 aaaatgataaatataaattacaaacatgaaattggaaatcgtttggatttaatt 64
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,120,027,631 Number of extensions: 159603387 Number of successful extensions: 15931637 Number of sequences better than 10.0: 2812 Length of query: 1689 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1665 Effective length of database: 97,308,875,965 Effective search space: 162019278481725 Effective search space used: 162019278481725 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
3 |
SH (FL, L) |
1 |
SF (FL, S) |
7 |
CH (FL, L) |
1 |
CF (FL, S) |
5 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |