Contig-U12059-1
Contig ID Contig-U12059-1
Contig update 2002.12.18
Contig sequence
>Contig-U12059-1 (Contig-U12059-1Q) /CSM_Contig/Contig-U12059-1Q.Seq.d
ATTTTTTTTTGTAAAATTTATTTATTCACTTTTTTTTTTAATTTTCTTTT
AAAAANGATAAATATAAATATATTTTAAAAAAAAAAATTATTATAATAAT
AAAAATAATAATTTTTTTTAATAATTNATTNAATTTTNTTTTAAAAANGA
TAAATATAAATTNCAAAGATGAAATNGGAAATCATTCGGATTNAATTNGT
ATTTNAANNNNNNNNN----------TTTTATTTTAATTATAAAATCTGT
AACTGCTTTTTTTTTTTAGTTTAATTTATATATATAAAAAAAAAAAAAAA
AAAAAATATATAAAAATATTTGGTACTACTTTTTGTAAATTTGTAACTAC
AATAAAAAATAAAAGCACACTTCAGTTTAAAATAAAAAATAAAAAAATAA
AAAAAATAAAAAAACAAATTTAAAATTTTATATGTATTTATTTAACATTT
GAAATTTGCTTTTATATTGTTAAAAAACTTATTTGCAAGACTCCAAATAA
ATTTTTTTTTTTAAATATTTTTTACTAAAGATAAATATTATTTGTTTTTT
TTTTTTTTTATTTTAAAATGGATAATAATTATAATAAATATTGTTCTGGA
CAATTAAGATTAATTTCAGATTTTGATAAAATTCAAGAAATATTTGAAAT
TGTTTTAAAAAATCATGTTAGTAATCAAGGTACCCAGGATAATAATAATA
TAAGAATTTTAGATATTGGTTGTTCACATGGTAAAAATTCAATAATTGTT
TTAAAACCATTAATTGAACAAATTAGAAATAAATGGAAGCCAAATGAAAA
AGTAATTGAAATATTTCATTCAGATTTATCTGTAAATGATTTTTCAAAAT
TATTTAATGAAGTTTATCATTTAAATTCATATTCTAATAAAATCAATAAT
ATTTTTACATATGGTATTGGTAATGGATATGAAAATCAATTAGTACCAGA
TAATTCAATTGATTTTATATTTTCATTTACAACTTTACATTGGGTACCAT
TTTTTAAATAAATATAAATCATTTGAAGGTTCGTTATATAATATTGCATT
TTCAGATCGTTTACCAGGTTTAGAAAATTATTATAAAGAAAGATTATTAA
ATGTATTGAATAATCGTTATAATGAATTAAAAGTCGGTGGTATTTTTTCA
TGTAATATTTTGATTGAAGAAGATCAAGGTAGTGAAAATGAACAAAAAAG
TAAATCAAGTTATTATTGTATGGTAAATGTTAAAGAAATTCTTAGAGAAA
TGAGTTATGAATCAATTTTATCAAGAGAAGAAGTCGAAAATATGATTGTT
CCATTCGTACATTTAACTAGAAATGAAGTATCAATATGCAATTGATAAAT
CAACTAATAATACAGGTCTAAAATTAATTTATGAAAATAGAATAACATCT
AATTGGGCTGATAGTTCTCGAGATGATGAATCTTTTGTTGGCTCACTTAT
TGCATTTATTGGTAATTTCATTAAAAATGCTATTAATGGTGATAAGAATA
GAGTTGATTCAATATTCAATGATTTTGAACAACGTCTTCATTTAAAATAT
AAATTAAATCCAAACGATTTCCAATTTCATGTTTGTAATTTATATTTATC
ATTTTTAAAAGAAAATTAAATAAACTTTATATAAAAAAAAATAAAAAAAT
AAAAAAATAAAAAAAAAAAATAAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 1679
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 18
Number of EST 25
Link to clone list U12059
List of clone(s)

est1=SHC790F,1,207
est2=SSF122F,208,679
est3=SHC790Z,340,1041
est4=SFK696E,368,1541
est5=SFH463F,372,556
est6=CFJ837E,388,1605
est7=CFD551F,417,928
est8=SFE414F,418,899
est9=SFI688F,424,1000
est10=CFB595E,425,1593
est11=SFB256E,436,1607
est12=CFC755F,444,675
est13=SFJ457F,449,1061
est14=CFF568E,463,1596
est15=SFG255F,466,921
est16=SLI827F,526,772
est17=CHB264Z,820,1564
est18=CFC755Z,854,1591
est19=SSH192F,904,1238
est20=SFE414Z,918,1595
est21=SFI688Z,974,1606
est22=SSF122Z,1001,1619
est23=SFG255Z,1054,1651
est24=SSI668F,1174,1616
est25=SSH192Z,1498,1671
Translated Amino Acid sequence
ffl*nlfihfff*FSFKXDKYKYILKKKIIIIIKIIIFFNNXXNFXLKXININXKDEXGN
HSDXIXIXXXX---

---FYFNYKICNCFFFLV*fiyikkkkkkni*kylvllfvnl*lq*kikahfslk*kikk
*kk*knkfkilyvfi*hlkfafillknlfarlqinfff*ifftkdkyylfffffilkwii
iiinivldn*d*fqilikfkkylklf*kimlvikvpriiii*ef*ilvvhmvkiq*lf*n
h*lnkleingsqmkk*lkyfiqiyl*mifqnylmkfii*ihiliksiiflhmvlvmdmki
n*yqiiqlilyfhlqlyigyhflnkyksfegslyniafsdrlpglenyykerllnvlnnr
ynelkvggifscnilieedqgseneqkskssyycmvnvkeilremsyesilsreevenmi
vpfvhltrnevsicn**in**yrskinl*k*nni*lg**fsr**ifcwltyciyw*fh*k
cy*w**e*s*fniq*f*ttssfki*ikskrfpiscl*fifiifkrklnklyikknkkikk
*kkkikkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iffckiylftfffnfllkxininif*kkkll***k**ffliixxixf*kx*i*ixkmkxe
iirixxvfxxxx---

---FYFNYKICNCFFFLV*fiyikkkkkkni*kylvllfvnl*lq*kikahfslk*kikk
*kk*knkfkilyvfi*hlkfafillknlfarlqinfff*ifftkdkyylfffffilkwii
iiinivldn*d*fqilikfkkylklf*kimlvikvpriiii*ef*ilvvhmvkiq*lf*n
h*lnkleingsqmkk*lkyfiqiyl*mifqnylmkfii*ihiliksiiflhmvlvmdmki
n*yqiiqlilyfhlqlyigyhflnkyksfegslyniafsdrlpglenyykerllnvlnnr
ynelkvggifscnilieedqgseneqkskssyycmvnvkeilremsyesilsreevenmi
vpfvhltrnevsicn**in**yrskinl*k*nni*lg**fsr**ifcwltyciyw*fh*k
cy*w**e*s*fniq*f*ttssfki*ikskrfpiscl*fifiifkrklnklyikknkkikk
*kkkikkkkk

Frame B:
fffvkfiyslffliff*kx*i*iyfkkknyynnknnnff**xixfxfkxdkykxqr*nxk
sfgxnxyxxxx---

---filiiksvtafff*fnlyi*kkkkkkiykniwyyfl*icnynkk*khtsv*nkk*kn
kknkktnlkfymylfni*nlllyc*ktylqdsk*ifffkyfllkiniicfffflf*ng**
l**ilfwtikinfrf**nsrni*ncfkksc**srypg***yknfrywlftw*kfnncfkt
in*tn*k*meak*ksn*nisfrfick*ffkii**slsfkfif**nq*yfyiwyw*wi*ks
istr*fn*fyifiynftlgtif*ininhlkvryiilhfqivyqv*kiiikkdy*my*iiv
imn*ksvvffhvif*lkkikvvkmnkkvnqviivw*mlkkflek*vmnqfyqekkski*l
fhsyi*lemkyqyaidkstnntglkliyenritsnwadssrddesfvgsliafignfikn
aingdknrvdsifndfeqrlhlkyklnpndfqfhvcnlylsflken*infi*kkikk*kn
kkkk*kkkkk

Frame C:
ffl*nlfihfff*FSFKXDKYKYILKKKIIIIIKIIIFFNNXXNFXLKXININXKDEXGN
HSDXIXIXXXX---

---lf*l*nl*llfffsliyiykkkkkkkyikifgttfckfvttiknkstlqfkiknkki
kkikkqi*nficiyltfeicfyivkklicktpnkffflnify*r*ilfvffffyfkmdnn
ynkycsgqlrlisdfdkiqeifeivlknhvsnqgtqdnnnirildigcshgknsiivlkp
lieqirnkwkpnekvieifhsdlsvndfsklfnevyhlnsysnkinniftygigngyenq
lvpdnsidfifsfttlhwvpffk*i*ii*rfvi*ycifrsftrfrkll*rkiikcie*sl
**iksrwyffm*yfd*rrsr**k*tkk*iklllygkc*rns*rnel*infikrrsrkydc
sirtfn*k*sinmqlinqliiqv*n*fmkie*hliglivlemmnlllahllhllvislkm
llmvirieliqysmilnnvfi*nin*iqtisnfmfviyiyhf*kkik*tlykkk*knkki
kkknkkkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12059-1 (Contig-U12059-1Q)
/CSM_Contig/Contig-U12059-1Q.Seq.d
(1689 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12059-1 (Contig-U12059-1Q) /CSM_Contig/Conti... 2127 0.0
Contig-U09358-1 (Contig-U09358-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11819-1 (Contig-U11819-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U14860-1 (Contig-U14860-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12945-1 (Contig-U12945-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12361-1 (Contig-U12361-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12139-1 (Contig-U12139-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U12096-1 (Contig-U12096-1Q) /CSM_Contig/Conti... 38 0.030
Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Conti... 38 0.030

>Contig-U12059-1 (Contig-U12059-1Q) /CSM_Contig/Contig-U12059-1Q.Seq.d
Length = 1689

Score = 2127 bits (1073), Expect = 0.0
Identities = 1073/1073 (100%)
Strand = Plus / Plus


Query: 560 attttaaaatggataataattataataaatattgttctggacaattaagattaatttcag 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attttaaaatggataataattataataaatattgttctggacaattaagattaatttcag 619


Query: 620 attttgataaaattcaagaaatatttgaaattgttttaaaaaatcatgttagtaatcaag 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attttgataaaattcaagaaatatttgaaattgttttaaaaaatcatgttagtaatcaag 679


Query: 680 gtacccaggataataataatataagaattttagatattggttgttcacatggtaaaaatt 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtacccaggataataataatataagaattttagatattggttgttcacatggtaaaaatt 739


Query: 740 caataattgttttaaaaccattaattgaacaaattagaaataaatggaagccaaatgaaa 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caataattgttttaaaaccattaattgaacaaattagaaataaatggaagccaaatgaaa 799


Query: 800 aagtaattgaaatatttcattcagatttatctgtaaatgatttttcaaaattatttaatg 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagtaattgaaatatttcattcagatttatctgtaaatgatttttcaaaattatttaatg 859


Query: 860 aagtttatcatttaaattcatattctaataaaatcaataatatttttacatatggtattg 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aagtttatcatttaaattcatattctaataaaatcaataatatttttacatatggtattg 919


Query: 920 gtaatggatatgaaaatcaattagtaccagataattcaattgattttatattttcattta 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gtaatggatatgaaaatcaattagtaccagataattcaattgattttatattttcattta 979


Query: 980 caactttacattgggtaccattttttaaataaatataaatcatttgaaggttcgttatat 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 caactttacattgggtaccattttttaaataaatataaatcatttgaaggttcgttatat 1039


Query: 1040 aatattgcattttcagatcgtttaccaggtttagaaaattattataaagaaagattatta 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 aatattgcattttcagatcgtttaccaggtttagaaaattattataaagaaagattatta 1099


Query: 1100 aatgtattgaataatcgttataatgaattaaaagtcggtggtattttttcatgtaatatt 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 aatgtattgaataatcgttataatgaattaaaagtcggtggtattttttcatgtaatatt 1159


Query: 1160 ttgattgaagaagatcaaggtagtgaaaatgaacaaaaaagtaaatcaagttattattgt 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 ttgattgaagaagatcaaggtagtgaaaatgaacaaaaaagtaaatcaagttattattgt 1219


Query: 1220 atggtaaatgttaaagaaattcttagagaaatgagttatgaatcaattttatcaagagaa 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 atggtaaatgttaaagaaattcttagagaaatgagttatgaatcaattttatcaagagaa 1279


Query: 1280 gaagtcgaaaatatgattgttccattcgtacatttaactagaaatgaagtatcaatatgc 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 gaagtcgaaaatatgattgttccattcgtacatttaactagaaatgaagtatcaatatgc 1339


Query: 1340 aattgataaatcaactaataatacaggtctaaaattaatttatgaaaatagaataacatc 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 aattgataaatcaactaataatacaggtctaaaattaatttatgaaaatagaataacatc 1399


Query: 1400 taattgggctgatagttctcgagatgatgaatcttttgttggctcacttattgcatttat 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 taattgggctgatagttctcgagatgatgaatcttttgttggctcacttattgcatttat 1459


Query: 1460 tggtaatttcattaaaaatgctattaatggtgataagaatagagttgattcaatattcaa 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 tggtaatttcattaaaaatgctattaatggtgataagaatagagttgattcaatattcaa 1519


Query: 1520 tgattttgaacaacgtcttcatttaaaatataaattaaatccaaacgatttccaatttca 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 tgattttgaacaacgtcttcatttaaaatataaattaaatccaaacgatttccaatttca 1579


Query: 1580 tgtttgtaatttatatttatcatttttaaaagaaaattaaataaactttatat 1632
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 tgtttgtaatttatatttatcatttttaaaagaaaattaaataaactttatat 1632


Score = 93.7 bits (47), Expect = 6e-19
Identities = 62/62 (100%)
Strand = Plus / Plus


Query: 143 aaaaangataaatataaattncaaagatgaaatnggaaatcattcggattnaattngtat 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aaaaangataaatataaattncaaagatgaaatnggaaatcattcggattnaattngtat 202


Query: 203 tt 204
||
Sbjct: 203 tt 204


Score = 79.8 bits (40), Expect = 9e-15
Identities = 61/70 (87%)
Strand = Plus / Minus


Query: 1552 aattaaatccaaacgatttccaatttcatgtttgtaatttatatttatcatttttaaaag 1611
|||| ||||| || ||||||| ||||||| |||| |||||||||||||| |||||||||
Sbjct: 197 aattnaatccgaatgatttccnatttcatctttgnaatttatatttatcntttttaaaan 138


Query: 1612 aaaattaaat 1621
|||||| |||
Sbjct: 137 aaaattnaat 128


Score = 67.9 bits (34), Expect = 3e-11
Identities = 56/67 (83%)
Strand = Plus / Plus


Query: 478 cttatttgcaagactccaaataaannnnnnnnnnnaaatattttttactaaagataaata 537
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 478 cttatttgcaagactccaaataaatttttttttttaaatattttttactaaagataaata 537


Query: 538 ttatttg 544
|||||||
Sbjct: 538 ttatttg 544


Score = 61.9 bits (31), Expect = 2e-09
Identities = 48/55 (87%)
Strand = Plus / Minus


Query: 143 aaaaangataaatataaattncaaagatgaaatnggaaatcattcggattnaatt 197
||||| |||||||||||||| |||| ||||||| ||||||| || ||||| ||||
Sbjct: 1606 aaaaatgataaatataaattacaaacatgaaattggaaatcgtttggatttaatt 1552


Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 227 ttttattttaattataaaatctgtaactgc 256
||||||||||||||||||||||||||||||
Sbjct: 227 ttttattttaattataaaatctgtaactgc 256


Score = 60.0 bits (30), Expect = 8e-09
Identities = 32/33 (96%)
Strand = Plus / Minus


Query: 1588 atttatatttatcatttttaaaagaaaattaaa 1620
||||||||||||| |||||||||||||||||||
Sbjct: 69 atttatatttatcntttttaaaagaaaattaaa 37


Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 51 aaaaangataaatataaatatatttt 76
||||||||||||||||||||||||||
Sbjct: 51 aaaaangataaatataaatatatttt 76


Score = 32.2 bits (16), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 143 aaaaangataaatataaat 161
|||||||||||||||||||
Sbjct: 51 aaaaangataaatataaat 69


Score = 32.2 bits (16), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 51 aaaaangataaatataaat 69
|||||||||||||||||||
Sbjct: 143 aaaaangataaatataaat 161


Score = 32.2 bits (16), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 51 aaaaangataaatataaat 69
||||| |||||||||||||
Sbjct: 1606 aaaaatgataaatataaat 1588


>Contig-U09358-1 (Contig-U09358-1Q) /CSM_Contig/Contig-U09358-1Q.Seq.d
Length = 930

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 572 ataataattataataaatatt 592
|||||||||||||||||||||
Sbjct: 889 ataataattataataaatatt 909


>Contig-U11819-1 (Contig-U11819-1Q) /CSM_Contig/Contig-U11819-1Q.Seq.d
Length = 620

Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 572 ataataattataataaatat 591
||||||||||||||||||||
Sbjct: 89 ataataattataataaatat 108


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,537
Number of Sequences: 6905
Number of extensions: 49537
Number of successful extensions: 5932
Number of sequences better than 10.0: 780
length of query: 1689
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1673
effective length of database: 5,564,391
effective search space: 9309226143
effective search space used: 9309226143
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.29
Homology vs DNA
Query= Contig-U12059-1 (Contig-U12059-1Q) /CSM_Contig/Contig-U12059-1Q.Seq.d
(1689 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ372429) Dictyostelium discoideum cDNA clone:ddc12g17, 3' ... 648 0.0 3
(BJ377472) Dictyostelium discoideum cDNA clone:ddc24o16, 3' ... 396 0.0 4
(BJ375878) Dictyostelium discoideum cDNA clone:ddc20j10, 3' ... 396 0.0 4
(BJ374136) Dictyostelium discoideum cDNA clone:ddc6n13, 3' e... 396 0.0 5
(BJ359051) Dictyostelium discoideum cDNA clone:ddc12g17, 5' ... 662 0.0 3
(BJ401347) Dictyostelium discoideum cDNA clone:dds22o24, 3' ... 396 0.0 5
(BJ400537) Dictyostelium discoideum cDNA clone:dds13m14, 3' ... 494 0.0 2
(BJ400189) Dictyostelium discoideum cDNA clone:dds9l04, 3' e... 396 0.0 5
(BJ399029) Dictyostelium discoideum cDNA clone:dds3o14, 3' e... 396 0.0 4
(C92939) Dictyostelium discoideum slug cDNA, clone SSF122. 436 0.0 3
(BJ373774) Dictyostelium discoideum cDNA clone:ddc4m23, 3' e... 396 0.0 5
(BJ402992) Dictyostelium discoideum cDNA clone:dds18o22, 3' ... 692 0.0 3
(BJ387610) Dictyostelium discoideum cDNA clone:dds3o14, 5' e... 779 0.0 2
(BJ360199) Dictyostelium discoideum cDNA clone:ddc4m23, 5' e... 779 0.0 1
(BJ389492) Dictyostelium discoideum cDNA clone:dds18o22, 5' ... 765 0.0 1
(BJ360916) Dictyostelium discoideum cDNA clone:ddc8e13, 5' e... 686 0.0 1
(BJ388357) Dictyostelium discoideum cDNA clone:dds9l04, 5' e... 630 e-176 1
(BJ404837) Dictyostelium discoideum cDNA clone:dds29d23, 3' ... 400 e-175 5
(BJ362123) Dictyostelium discoideum cDNA clone:ddc20j10, 5' ... 624 e-174 1
(BJ391396) Dictyostelium discoideum cDNA clone:dds13m14, 5' ... 589 e-163 1
(BJ390582) Dictyostelium discoideum cDNA clone:dds22o24, 5' ... 579 e-160 1
(AU073436) Dictyostelium discoideum slug cDNA, clone SSH192. 460 e-125 1
(AU073899) Dictyostelium discoideum slug cDNA, clone SSI668. 208 2e-89 2
(BJ360550) Dictyostelium discoideum cDNA clone:ddc6n13, 5' e... 240 1e-58 1
(AU038042) Dictyostelium discoideum slug cDNA, clone SSH192. 196 2e-45 1
(BJ393013) Dictyostelium discoideum cDNA clone:dds29d23, 5' ... 121 1e-39 3
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 42 2e-12 16
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 42 1e-10 19
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 40 5e-10 17
(EU024653) Polistes sp. MD1 mitochondrion, partial genome. 38 6e-10 9
(AU072802) Dictyostelium discoideum slug cDNA, clone SSF122. 60 2e-09 2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 36 2e-09 20
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 38 5e-09 18
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 9e-09 17
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 48 9e-09 16
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 38 9e-09 18
(AL035476) Plasmodium falciparum MAL4P3. 40 1e-08 15
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 2e-08 17
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 38 2e-08 14
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 38 3e-08 15
(AL844509) Plasmodium falciparum chromosome 13. 42 4e-08 13
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 4e-08 19
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 5e-08 20
(DD010735) Diagnosis of known genetic Parameters within the ... 40 6e-08 12
(AL844506) Plasmodium falciparum chromosome 7. 44 7e-08 15
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 7e-08 17
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 1e-07 19
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 1e-07 18
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 3e-07 17
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 3e-07 18
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 40 3e-07 12
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 3e-07 15
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 3e-07 18
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 3e-07 19
(AL031745) Plasmodium falciparum DNA from MAL1P2. 38 3e-07 15
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 46 4e-07 18
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 38 4e-07 16
(AL034557) Plasmodium falciparum MAL4P1. 36 4e-07 16
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 38 4e-07 18
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 4e-07 14
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 6e-07 16
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 6e-07 17
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 7e-07 14
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 8e-07 13
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 8e-07 19
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 46 1e-06 14
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 38 2e-06 20
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 38 2e-06 16
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 2e-06 13
(Z98551) Plasmodium falciparum MAL3P6. 38 2e-06 14
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 2e-06 16
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 3e-06 15
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 3e-06 21
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 38 3e-06 14
(AC117073) Dictyostelium discoideum chromosome 2 map 6045872... 42 3e-06 9
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 3e-06 16
(AF310896) Dictyostelium discoideum RacJ (racJ) gene, comple... 32 3e-06 8
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 3e-06 16
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 36 4e-06 17
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 46 5e-06 11
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 40 5e-06 20
(CS468877) Sequence 68 from Patent EP1748080. 38 5e-06 18
(CS419354) Sequence 68 from Patent WO2006094836. 38 5e-06 18
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 40 6e-06 15
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 36 6e-06 16
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 38 7e-06 14
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 7e-06 16
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 36 8e-06 18
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 38 8e-06 13
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 9e-06 17
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 9e-06 18
(AL034558) Plasmodium falciparum MAL3P2. 38 1e-05 15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 1e-05 14
(CS468878) Sequence 69 from Patent EP1748080. 38 2e-05 18
(CS419355) Sequence 69 from Patent WO2006094836. 38 2e-05 18
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 2e-05 15
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 36 2e-05 15
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 38 2e-05 16
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 38 2e-05 14
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 38 2e-05 15

>(BJ372429) Dictyostelium discoideum cDNA clone:ddc12g17, 3' end,
single read.
Length = 673

Score = 648 bits (327), Expect(3) = 0.0
Identities = 327/327 (100%)
Strand = Plus / Minus


Query: 1001 tttttaaataaatataaatcatttgaaggttcgttatataatattgcattttcagatcgt 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tttttaaataaatataaatcatttgaaggttcgttatataatattgcattttcagatcgt 555


Query: 1061 ttaccaggtttagaaaattattataaagaaagattattaaatgtattgaataatcgttat 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttaccaggtttagaaaattattataaagaaagattattaaatgtattgaataatcgttat 495


Query: 1121 aatgaattaaaagtcggtggtattttttcatgtaatattttgattgaagaagatcaaggt 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aatgaattaaaagtcggtggtattttttcatgtaatattttgattgaagaagatcaaggt 435


Query: 1181 agtgaaaatgaacaaaaaagtaaatcaagttattattgtatggtaaatgttaaagaaatt 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agtgaaaatgaacaaaaaagtaaatcaagttattattgtatggtaaatgttaaagaaatt 375


Query: 1241 cttagagaaatgagttatgaatcaattttatcaagagaagaagtcgaaaatatgattgtt 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cttagagaaatgagttatgaatcaattttatcaagagaagaagtcgaaaatatgattgtt 315


Query: 1301 ccattcgtacatttaactagaaatgaa 1327
|||||||||||||||||||||||||||
Sbjct: 314 ccattcgtacatttaactagaaatgaa 288

Score = 406 bits (205), Expect(3) = 0.0
Identities = 259/277 (93%)
Strand = Plus / Minus


Query: 1329 tatcaatatgcaattgataaatcaactaataatacaggtctaaaattaatttatgaaaat 1388
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 287 tatcaatatgcaattgataaatcaactaataatactggtctaaaattaatttatgaaaat 228


Query: 1389 agaataacatctaattgggctgatagttctcgagatgatgaatcttttgttggctcactt 1448
| |||||| ||||||||||||||| | || ||||||| |||| ||| |||| ||||||
Sbjct: 227 aaaataactactaattgggctgatactcatcaagatgataaatcatttattggttcactt 168


Query: 1449 attgcatttattggtaatttcattaaaaatgctattaatggtgataagaatagagttgat 1508
||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atttcaattattggacattctattaaaaatgctattaatggtgataagaatagagttgat 108


Query: 1509 tcaatattcaatgattttgaacaacgtcttcatttaaaatataaattaaatccaaacgat 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tcaatattcaatgattttgaacaacgtcttcatttaaaatataaattaaatccaaacgat 48


Query: 1569 ttccaatttcatgtttgtaatttatatttatcatttt 1605
|||||||||||||||||||||||||||||||||||||
Sbjct: 47 ttccaatttcatgtttgtaatttatatttatcatttt 11

Score = 127 bits (64), Expect(3) = 0.0
Identities = 64/64 (100%)
Strand = Plus / Minus


Query: 941 tagtaccagataattcaattgattttatattttcatttacaactttacattgggtaccat 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tagtaccagataattcaattgattttatattttcatttacaactttacattgggtaccat 614


Query: 1001 tttt 1004
||||
Sbjct: 613 tttt 610

Score = 60.0 bits (30), Expect = 3e-04
Identities = 47/54 (87%)
Strand = Plus / Plus


Query: 144 aaaangataaatataaattncaaagatgaaatnggaaatcattcggattnaatt 197
|||| |||||||||||||| |||| ||||||| ||||||| || ||||| ||||
Sbjct: 11 aaaatgataaatataaattacaaacatgaaattggaaatcgtttggatttaatt 64

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,120,027,631
Number of extensions: 159603387
Number of successful extensions: 15931637
Number of sequences better than 10.0: 2812
Length of query: 1689
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1665
Effective length of database: 97,308,875,965
Effective search space: 162019278481725
Effective search space used: 162019278481725
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U12059-1 (Contig-U12059-1Q) /CSM_Contig/Contig-U12059-1Q.Seq.d
(1689 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54EC5) RecName: Full=Uncharacterized protein DDB_G0291584; 65 8e-09
AM486144_2(AM486144|pid:none) Vitis vinifera contig VV78X127342.... 65 1e-08
(Q9FYZ9) RecName: Full=Benzoate carboxyl methyltransferase; ... 63 4e-08
AJ628349_1(AJ628349|pid:none) Nicotiana suaveolens mRNA for S-ad... 60 3e-07
AY362825_1(AY362825|pid:none) Coffea liberica var. dewevrei puta... 58 1e-06
AF494417_1(AF494417|pid:none) Coffea liberica clone 649.1 N-meth... 57 2e-06
AK228053_1(AK228053|pid:none) Arabidopsis thaliana mRNA for SAMT... 57 2e-06
AF494413_1(AF494413|pid:none) Coffea arabica clone 629.10 N-meth... 57 2e-06
AM461173_1(AM461173|pid:none) Vitis vinifera contig VV78X183906.... 57 2e-06
AK230364_1(AK230364|pid:none) Arabidopsis thaliana mRNA for S-ad... 56 3e-06
AY050969_1(AY050969|pid:none) Arabidopsis thaliana putative AtPP... 56 5e-06
AL391254_6(AL391254|pid:none) Arabidopsis thaliana DNA chromosom... 56 5e-06
AF494419_1(AF494419|pid:none) Coffea liberica clone 649.9 N-meth... 55 6e-06
CP000511_3701(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 55 8e-06
AL391254_5(AL391254|pid:none) Arabidopsis thaliana DNA chromosom... 55 8e-06
AF494415_1(AF494415|pid:none) Coffea canephora clone 640.3 N-met... 55 1e-05
AY166630_1(AY166630|pid:none) Pisum sativum putative S-adenosyl-... 55 1e-05
AM427079_5(AM427079|pid:none) Vitis vinifera contig VV78X211230.... 55 1e-05
AY918124_1(AY918124|pid:none) Coffea canephora clone CX10 N-meth... 54 1e-05
AB084126_1(AB084126|pid:none) Coffea arabica CaMXMT2 mRNA for 7-... 54 1e-05
AB084125_1(AB084125|pid:none) Coffea arabica CaDXMT1 mRNA for 3,... 54 1e-05
AB048794_1(AB048794|pid:none) Coffea arabica CaMXMT1 mRNA for 7-... 54 1e-05
AF494418_1(AF494418|pid:none) Coffea liberica clone 649.3 N-meth... 54 1e-05
AY918126_1(AY918126|pid:none) Coffea canephora clone CS2B putati... 54 1e-05
AB034700_1(AB034700|pid:none) Coffea arabica CTS1 mRNA for theob... 54 1e-05
AE016958_2010(AE016958|pid:none) Mycobacterium avium subsp. para... 54 2e-05
AY362826_1(AY362826|pid:none) Coffea canephora putative N-methyl... 54 2e-05
CP000479_2086(CP000479|pid:none) Mycobacterium avium 104, comple... 54 2e-05
AC012563_11(AC012563|pid:none) Arabidopsis thaliana chromosome 1... 53 3e-05
EU818945_1(EU818945|pid:none) Glycine max salicylic acid methyl ... 53 3e-05
EU033970_1(EU033970|pid:none) Ocimum basilicum cinnamate/p-couma... 53 3e-05
AY918127_1(AY918127|pid:none) Coffea canephora clone CS2A putati... 53 3e-05
EF472977_1(EF472977|pid:none) Schwenckia americana benzoic acid/... 53 4e-05
EU057974_1(EU057974|pid:none) Catharanthus roseus loganic acid m... 53 4e-05
AF133053_1(AF133053|pid:none) Clarkia breweri S-adenosyl-L-methi... 53 4e-05
EU033969_1(EU033969|pid:none) Ocimum basilicum cinnamate/p-couma... 53 4e-05
AB046595_1(AB046595|pid:none) Cucumis sativus ERAF16 mRNA for S-... 52 7e-05
DQ422955_1(DQ422955|pid:none) Coffea canephora 3,7-dimethylxanth... 52 9e-05
AB086414_1(AB086414|pid:none) Coffea arabica CCS1 mRNA for caffe... 52 9e-05
AC137669_10(AC137669|pid:none) Medicago truncatula clone mth2-27... 51 1e-04
AB362886_1(AB362886|pid:none) Camellia chrysantha CcCS2 mRNA for... 51 1e-04
EU106367_1(EU106367|pid:none) Chimonanthus praecox S-adenosyl-L-... 51 1e-04
AC125480_17(AC125480|pid:none) Medicago truncatula clone mth2-8c... 50 2e-04
AC151458_18(AC151458|pid:none) Medicago truncatula clone mth2-10... 50 2e-04
AF494416_1(AF494416|pid:none) Coffea canephora clone 640.5 N-met... 50 3e-04
EF472975_1(EF472975|pid:none) Protoschwenkia mandonii benzoic ac... 50 3e-04
EU309728_1(EU309728|pid:none) Humulus lupulus carboxyl methyltra... 50 3e-04
AC008153_14(AC008153|pid:none) Arabidopsis thaliana chromosome 3... 50 3e-04
DQ422954_1(DQ422954|pid:none) Coffea canephora xanthosine methyl... 50 3e-04
AB009049_2(AB009049|pid:none) Arabidopsis thaliana genomic DNA, ... 49 4e-04
AB362883_1(AB362883|pid:none) Camellia granthamiana CgCS2 mRNA f... 49 4e-04
BT015738_1(BT015738|pid:none) Arabidopsis thaliana At5g56300 mRN... 49 4e-04
(Q9FKD0) RecName: Full=Putative S-adenosylmethionine-dependent m... 49 4e-04
AY741500_1(AY741500|pid:none) Solandra maxima SAMT (SAMT) mRNA, ... 49 6e-04
FJ869889_1(FJ869889|pid:none) Mikania micrantha salicylic acid c... 49 7e-04
AJ863118_1(AJ863118|pid:none) Hoya carnosa mRNA for S-adenosyl-L... 49 7e-04
AC024609_3(AC024609|pid:none) Arabidopsis thaliana chromosome I ... 49 7e-04
AY008434_1(AY008434|pid:none) Arabidopsis thaliana S-adenosyl-L-... 49 7e-04
AP005805_13(AP005805|pid:none) Oryza sativa Japonica Group genom... 49 7e-04
AP008212_962(AP008212|pid:none) Oryza sativa (japonica cultivar-... 49 7e-04
AP003254_12(AP003254|pid:none) Oryza sativa Japonica Group genom... 48 0.001
AB297451_1(AB297451|pid:none) Camellia japonica CjCS1 mRNA for t... 48 0.001
AB362884_1(AB362884|pid:none) Camellia kissii CkCS1 mRNA for the... 48 0.001
AY741488_1(AY741488|pid:none) Schizanthus pinnatus SAMT (SAMT) m... 47 0.002
AY741486_1(AY741486|pid:none) Exodeconus miersii SAMT (SAMT) mRN... 47 0.002
CP000552_409(CP000552|pid:none) Prochlorococcus marinus str. MIT... 47 0.002
AK220857_1(AK220857|pid:none) Arabidopsis thaliana mRNA for S-ad... 47 0.002
AY087665_1(AY087665|pid:none) Arabidopsis thaliana clone 37493 m... 47 0.002
AY741492_1(AY741492|pid:none) Ipomoea alba SAMT (SAMT) mRNA, par... 47 0.002
AB010071_20(AB010071|pid:none) Arabidopsis thaliana genomic DNA,... 47 0.002
CP000435_1411(CP000435|pid:none) Synechococcus sp. CC9311, compl... 47 0.003
AK108651_1(AK108651|pid:none) Oryza sativa Japonica Group cDNA c... 46 0.004
AY907710_1(AY907710|pid:none) Camellia sinensis caffeine synthas... 46 0.004
AY224596_1(AY224596|pid:none) Arabidopsis lyrata subsp. lyrata m... 46 0.004
AY741501_1(AY741501|pid:none) Nicandra physalodes SAMT (SAMT) mR... 46 0.004
EU146296_1(EU146296|pid:none) Oryza sativa (japonica cultivar-gr... 46 0.004
AB207817_1(AB207817|pid:none) Camellia ptilophylla PCS1 mRNA for... 46 0.005
AK228891_1(AK228891|pid:none) Arabidopsis thaliana mRNA for hypo... 46 0.005
(Q9SBK6) RecName: Full=Jasmonate O-methyltransferase; E... 46 0.005
(Q9FKC8) RecName: Full=Putative S-adenosylmethionine-dependent m... 45 0.006
AY741490_1(AY741490|pid:none) Brunfelsia americana SAMT (SAMT) m... 45 0.006
AY741491_1(AY741491|pid:none) Lycium ferocissimum SAMT (SAMT) mR... 45 0.006
EU818946_1(EU818946|pid:none) Glycine max salicylic acid methyl ... 45 0.006
AP004725_2(AP004725|pid:none) Oryza sativa Japonica Group genomi... 45 0.006
DQ366715_14(DQ366715|pid:none) Uncultured Prochlorococcus marinu... 45 0.008
AB049752_1(AB049752|pid:none) Atropa belladonna AbSAMT1 mRNA for... 45 0.008
CP000854_3311(CP000854|pid:none) Mycobacterium marinum M, comple... 45 0.008
EF472972_1(EF472972|pid:none) Datura wrightii salicylic acid/ben... 45 0.008
AY741482_1(AY741482|pid:none) Schwenckia americana SAMT (SAMT) m... 45 0.011
AC152969_12(AC152969|pid:none) Oryza sativa (japonica cultivar-g... 45 0.011
AC073405_11(AC073405|pid:none) Oryza sativa (japonica cultivar-g... 45 0.011
AY741489_1(AY741489|pid:none) Solanum dulcamara SAMT (SAMT) mRNA... 44 0.014
AB207816_1(AB207816|pid:none) Camellia irrawadiensis ICS2 mRNA f... 44 0.014
AP004862_13(AP004862|pid:none) Oryza sativa Japonica Group genom... 44 0.014
AP008212_745(AP008212|pid:none) Oryza sativa (japonica cultivar-... 44 0.014
EF526217_1(EF526217|pid:none) Camellia sinensis caffeine synthas... 44 0.014
AY233465_1(AY233465|pid:none) Petunia x hybrida S-adenosyl-L-met... 44 0.018
CR855038_14(CR855038|pid:none) Oryza sativa genomic DNA, chromos... 44 0.018
AL606646_12(AL606646|pid:none) Oryza sativa genomic DNA, chromos... 44 0.018
AY741497_1(AY741497|pid:none) Nolana hybrid cultivar SAMT (SAMT)... 44 0.018
AB031280_1(AB031280|pid:none) Camellia sinensis TCS1 mRNA for ca... 44 0.023
AY741481_1(AY741481|pid:none) Cestrum elegans SAMT (SAMT) mRNA, ... 44 0.023
A86285(A86285) protein F9L1.6 [imported] - Arabidopsis thaliana ... 44 0.023
AK241207_1(AK241207|pid:none) Oryza sativa Japonica Group cDNA, ... 44 0.023
AL606646_5(AL606646|pid:none) Oryza sativa genomic DNA, chromoso... 43 0.040
AY524975_1(AY524975|pid:none) Oryza sativa (indica cultivar-grou... 43 0.040
AP005968_3(AP005968|pid:none) Oryza sativa Japonica Group genomi... 42 0.052
AC145365_14(AC145365|pid:none) Oryza sativa (japonica cultivar-g... 42 0.068
AP004583_9(AP004583|pid:none) Oryza sativa Japonica Group genomi... 42 0.068
AC013288_17(AC013288|pid:none) Arabidopsis thaliana chromosome 1... 42 0.089
EF472974_1(EF472974|pid:none) Protoschwenkia mandonii salicylic ... 41 0.15
AC145364_5(AC145364|pid:none) Oryza sativa (japonica cultivar-gr... 41 0.15
CP000325_1068(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 40 0.20
EF147000_1(EF147000|pid:none) Populus trichocarpa clone WS01225_... 40 0.20
EU966392_1(EU966392|pid:none) Zea mays clone 294102 unknown mRNA. 40 0.20
EU956261_1(EU956261|pid:none) Zea mays clone 1559821 benzoate ca... 40 0.26
AC145364_18(AC145364|pid:none) Oryza sativa (japonica cultivar-g... 40 0.34
AC145364_6(AC145364|pid:none) Oryza sativa (japonica cultivar-gr... 39 0.58
EF472973_1(EF472973|pid:none) Nicotiana suaveolens salicylic aci... 38 0.98
AC151458_4(AC151458|pid:none) Medicago truncatula clone mth2-105... 38 1.3
AY689437_32(AY689437|pid:none) Deerpox virus W-1170-84, complete... 37 1.7
AY689436_31(AY689436|pid:none) Deerpox virus W-848-83, complete ... 37 1.7
AL844505_76(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 37 2.2
BT085801_1(BT085801|pid:none) Zea mays full-length cDNA clone ZM... 37 2.2
BT035523_1(BT035523|pid:none) Zea mays full-length cDNA clone ZM... 37 2.2
AP005805_14(AP005805|pid:none) Oryza sativa Japonica Group genom... 36 3.7
CP000099_2780(CP000099|pid:none) Methanosarcina barkeri str. Fus... 36 4.9
AJ270202_1(AJ270202|pid:none) Entodinium caudatum partial mRNA f... 35 6.4
AL445565_79(AL445565|pid:none) Mycoplasma pulmonis (strain UAB C... 35 6.4
AE014186_446(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.4
EF677398_1(EF677398|pid:none) Picea sitchensis clone WS02768_C22... 35 8.3
BT041195_1(BT041195|pid:none) Zea mays full-length cDNA clone ZM... 35 8.3
AB231328_1(AB231328|pid:none) Plasmodium berghei lsp2 gene for l... 35 8.3
CP000040_21(CP000040|pid:none) Bacillus cereus E33L plasmid pE33... 35 8.3
AE014186_335(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 8.3
AK062130_1(AK062130|pid:none) Oryza sativa Japonica Group cDNA c... 35 8.3
AP005968_1(AP005968|pid:none) Oryza sativa Japonica Group genomi... 35 8.3

>(Q54EC5) RecName: Full=Uncharacterized protein DDB_G0291584;
Length = 39

Score = 65.1 bits (157), Expect = 8e-09
Identities = 32/38 (84%), Positives = 32/38 (84%)
Frame = -1

Query: 1602 MININYKHEIGNRLDLIYILNEDVVQNH*ILNQLYSYH 1489
MININYK EIGN DLI ILN DVVQNH ILNQLYSYH
Sbjct: 1 MININYKDEIGNHSDLICILNVDVVQNHLILNQLYSYH 38

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,579,139,361
Number of extensions: 26914889
Number of successful extensions: 76382
Number of sequences better than 10.0: 138
Number of HSP's gapped: 76267
Number of HSP's successfully gapped: 141
Length of query: 563
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 429
Effective length of database: 617,481,958
Effective search space: 264899759982
Effective search space used: 264899759982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.60 gvh: 0.35 alm: 0.30 top: 0.27 tms: 0.07 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 1.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U12059-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 3
SH (FL, L) 1
SF (FL, S) 7
CH (FL, L) 1
CF (FL, S) 5
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0