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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12032-1
Contig ID Contig-U12032-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Contig-U12032-1Q.Seq.d
AATTAATAAATTAATAAATTAATAAATTAATAAATTAATAAATTAATAAA
TTAATAAATTAATAAATTAATAAATATATAAATAAATAAATAAATAAATA
AATAAATAAATAATATATTTGTTTTAATTAATAATAATTTTTTTATATAA
ATACTTCAAAAAAATAAAATAAAATAAAAGTTCGAATGGAGTCTAAAAAA
AACTCTTATTATAAAAACGTGATGGATAAAATATATGCTAAAGAAAAGGA
TGTGCTTTCTATAAACAAAGATTTTCAAGAGAATAACTTGACAAGAATAT
CTCTTATATTGAATTATAAAGATTTTTTACCTTAAATTTGATGAGAGCCT
CCATGGTTATTCATTTGGATATGTAACTAACCTTTTTGGTTTAAAACTCT
ACTCGCCATTTACTGAAACTGTCCGCTTTGATGATACTGAAAAATATATG
AAGACAATTCTTGGTGTTCCCAGTAATGAGGCTCTCCCACAACTTTGTAG
CGATCAACATCAAGATTTTGAAGAAAAAGATCCACAAATAGAAATACTAC
CATCTCCACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACTTACACCACCTCCATCACCTCCATTACTTCCAA
TACCTCAACCACCAGCACAAAATGAAGAACAACAACTTACACAACCTCCA
TCAATTCCACCACCTCAACAAAAACAAATAAAAATACAAAAATCTGATAG
AGGTACTCAAGTTAAGTCAATAACTAATCCTGTAAATAGTTTATCAAAAT
ATATTAATAATAGTTCTTTGGATTATTCGATAAAAAAAAACTATACCTTG
GAGGAAATTTACGAAAATAACAAAAACTATATGGATAAAACCAATAATTT
TTTACACTTTTTATTTACATTTATTGATAAAACTACAATCAAAGACTTGG
AACATTTTGAAAAGGAAATAAGTAGAGTTCATAATATCGAAAAATTAATC
AACGAACAAAATGTTAAAGGTGAAACTCCACTTCACTCATTAATTCTTTA
TAATTC----------CTTCAAGTTAAAGTTTCAGCCGATGAACAATTGG
ATACTCATTTCACATTGATTGAAACTGTTCCAAGGGATAGATTCTATGAA
CTATCCAATCAACAACCAATGAAATCAAAATTCACAAAAGAACAACTTGC
TCAAAGAATTAAAGGTGAGGCTGTTAGTGATCCAAGACATGGTCATGTTT
TCTTGTATCTTGATAAAACGTTTACATTGCCACGTTATGACGCTCAATTT
TCAAACTATCGTGATATCATCTCAAATCTAAATTTAGTTAGAACCGTTTT
AATCAATGAAGACTATCTCACTGGCGCTCCAGATGAAATTTCAAATCAAA
AGAAAACTATTTTCATAGATTCACCAGGTTTCGAGCCAAAAACTGAACAT
GACCCAGAGAAATTGTTGGGTAGTATTCGTGTGGTTCAATTCTTTCAGTC
CACTAGTGATCTAACTTTGTTTATGATGAAAGCAAAGGAATTGGCATTGG
TTTCATCTCAGATTCAAATCGTTGAACTTTGTGTACTCTATAAGACCTAT
GGTGCTGATGTTGTCGATCATATGGTAACTCAAATGTTTAATAAAAAGGG
TGAATCAAAATCATTCTTTTCCCTCTTTGAAATGGTTAAAGGTTTGGTAG
AACAAATTCGTTTGAAAAATATTCCAAAAACCCAAGAATCAAATGGTACC
TCTGTTTGGGATGGTATCAAGTTTGTTATGACTCAAATCGATACTATAAA
CTCAAATTTGAAAGAACAATACTTTGAATTGGGTCGTTTATTGGGTAAAG
GTTTAATGTTTTTAGATCCACCAACCTATAGACAATGTAAAGCCATAGCC
TTACCAATCGATAGAGAATTTAGTTCCCCTCAAGAACGTAGCCAAAAGTG
TGGTGATCTTGATGAATTGTTACATTATATATATAATCTTAATCGTGGTA
GTACCTATAATTCTCGTTTAGAATGTGCAATCGAAGAAATGACCACTGAT
CTCTTAAATAATATTCAAAGATCTTGGACAAATTACCTCTTTAATAGTGA
TTATAATTTAGTTTTACAATTAAAAGAAAGATCAAAAAATAGAGTTAGTG
GTCCTTCTCATATGCATAGTAATTCTTTAAGGAGATAATAATAAATTATA
AATAATAAATTATAAATAATAAATAATAAATAATAATAATAAATAATATT
ATATTTAAAAAATAAAATTTTAAAAATAGATAAAAAAAA
Gap gap included
Contig length 2329
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 342353
End point 344120
Strand (PLUS/MINUS) PLUS
Number of clones 39
Number of EST 40
Link to clone list U12032
List of clone(s) 

est1=AHI732Z,-21,613
est2=SHA380F,48,658
est3=SHL802F,207,698
est4=SHH113F,232,752
est5=AHJ123F,261,738
est6=SHF302F,538,678
est7=SHJ372F,547,684
est8=AHP187F,570,820
est9=AHQ882F,583,1063
est10=SHA865F,588,765
est11=AHA256F,595,1062
est12=AHH468F,596,1106
est13=SHB758F,599,1104
est14=AHA484F,600,1061
est15=CHM283F,614,1066
est16=CHP203Z,1107,1652
est17=CHQ580Z,1530,2188
est18=SHA865Z,1541,2276
est19=CHF896Z,1553,2196
est20=AHD189Z,1558,2180
est21=CHF436Z,1559,2317
est22=AHD879Z,1560,2272
est23=AHH781Z,1562,2285
est24=CHL104Z,1574,2321
est25=CHR271Z,1594,2269
est26=AHJ317Z,1595,2183
est27=AHN422Z,1595,2285
est28=CHI372Z,1595,2323
est29=SHA279Z,1595,2183
est30=CHL668Z,1596,2245
est31=CHQ481Z,1597,2322
est32=CHH452Z,1598,2332
est33=CHN550Z,1599,2281
est34=AHG215Z,1640,2270
est35=AHA101Z,1643,2320
est36=VHO454Z,1653,2293
est37=CHK739Z,1721,2277
est38=CHK782Z,1727,2240
est39=VHD501Z,2036,2192
est40=VHD889Z,2123,2225
Translated Amino Acid sequence 
n**inklin**inklin**inklini*ink*ink*innifvlinnnffi*ilqknkik*k
fewslkktliikt*wikymlkkrmcfl*tkifkrit*qeylly*IIKIFYLKFDESLHGY
SFGYVTNLFGLKLYSPFTETVRFDDTEKYMKTILGVPSNEALPQLCSDQHQDFEEKDPQI
EILPSPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLTPPPSPPLLPIPQPPAQ
NEEQQLTQPPSIPPPQQKQIKIQKSDRGTQVKSITNPVNSLSKYINNSSLDYSIKKNYTL
EEIYENNKNYMDKTNNFLHFLFTFIDKTTIKDLEHFEKEISRVHNIEKLINEQNVKGETP
LHSLILYN---

---LQVKVSADEQLDTHFTLIETVPRDRFYELSNQQPMKSKFTKEQLAQRIKGEAVSDPR
HGHVFLYLDKTFTLPRYDAQFSNYRDIISNLNLVRTVLINEDYLTGAPDEISNQKKTIFI
DSPGFEPKTEHDPEKLLGSIRVVQFFQSTSDLTLFMMKAKELALVSSQIQIVELCVLYKT
YGADVVDHMVTQMFNKKGESKSFFSLFEMVKGLVEQIRLKNIPKTQESNGTSVWDGIKFV
MTQIDTINSNLKEQYFELGRLLGKGLMFLDPPTYRQCKAIALPIDREFSSPQERSQKCGD
LDELLHYIYNLNRGSTYNSRLECAIEEMTTDLLNNIQRSWTNYLFNSDYNLVLQLKERSK
NRVSGPSHMHSNSLRR***iinnkl*iinnk****iilylknkilkidkk
Translated Amino Acid sequence (All Frames) 
Frame A:
n**inklin**inklin**inklini*ink*ink*innifvlinnnffi*ilqknkik*k
fewslkktliikt*wikymlkkrmcfl*tkifkrit*qeylly*IIKIFYLKFDESLHGY
SFGYVTNLFGLKLYSPFTETVRFDDTEKYMKTILGVPSNEALPQLCSDQHQDFEEKDPQI
EILPSPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLTPPPSPPLLPIPQPPAQ
NEEQQLTQPPSIPPPQQKQIKIQKSDRGTQVKSITNPVNSLSKYINNSSLDYSIKKNYTL
EEIYENNKNYMDKTNNFLHFLFTFIDKTTIKDLEHFEKEISRVHNIEKLINEQNVKGETP
LHSLILYN---

---LQVKVSADEQLDTHFTLIETVPRDRFYELSNQQPMKSKFTKEQLAQRIKGEAVSDPR
HGHVFLYLDKTFTLPRYDAQFSNYRDIISNLNLVRTVLINEDYLTGAPDEISNQKKTIFI
DSPGFEPKTEHDPEKLLGSIRVVQFFQSTSDLTLFMMKAKELALVSSQIQIVELCVLYKT
YGADVVDHMVTQMFNKKGESKSFFSLFEMVKGLVEQIRLKNIPKTQESNGTSVWDGIKFV
MTQIDTINSNLKEQYFELGRLLGKGLMFLDPPTYRQCKAIALPIDREFSSPQERSQKCGD
LDELLHYIYNLNRGSTYNSRLECAIEEMTTDLLNNIQRSWTNYLFNSDYNLVLQLKERSK
NRVSGPSHMHSNSLRR***iinnkl*iinnk****iilylknkilkidkk

Frame B:
inklin**inklin**inklin**iyk*ink*ink*iiylf*liiiflykyfkkik*nks
sngv*kklll*krdg*nic*rkgcafykqrfsre*ldknisyiel*rfftlnlmrasmvi
hldm*ltflv*nstrhllklsalmilkni*rqflvfpvmrlshnfvainikilkkkihk*
kyyhlhnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnlhhlhhlhyfqylnhqhk
mknnnlhnlhqfhhlnknk*kyknlievlklsq*lil*ivyqniliivlwiir*kktipw
rkftkitktiwikpiifytfylhlliklqsktwnilkrk*vefiiskn*stnkmlkvklh
fth*ffii---

---fklkfqpmnnwilish*lklfqgidsmnypinnq*nqnsqknnllkelkvrllviqd
mvmfscilikrlhchvmtlnfqtivissqi*i*lepf*smktislalqmkfqikrklfs*
ihqvssqklnmtqrncwvvfvwfnsfsplvi*lcl**kqrnwhwfhlrfkslnfvysirp
mvlmlsiiw*lkclikrvnqnhsfpslkwlkvw*nkfv*kifqkpknqmvplfgmvssll
*lksil*tqi*knntlnwvvywvkv*cf*ihqpidnvkp*pyqsienlvplknvaksvvi
lmncyiiyiilivvvpiilv*nvqskk*plis*iifkdlgqitsliviii*fyn*kkdqk
ielvvllicivil*gdnnkl*iinyk**iinnnnk*yyi*kikf*k*ikk

Frame C:
lin**inklin**inklin**inkyink*ink*ink*yicfn***ffyintskk*nkikv
rmeskknsyyknvmdkiyakekdvlsinkdfqennltrislilnykdflp*i**eppwlf
iwicn*pfwfktllaiy*ncpl**y*kiyednswcsq**gspttl*rstsrf*rkrstnr
nttistttttttttttttttttttttttttttttttttttttyttsitsitsntsttstk
*rtttyttsinsttstktnkntki**ryss*vnn*sck*fikiy***ffglfdkkklylg
gnlrk*qklyg*nq*fftlfiyiy**nynqrlgtf*kgnk*ss*yrkinqrtkc*r*nst
slinsl*f---

---ss*sfsr*tigysfhid*ncskg*il*tiqsttneikihkrttcskn*r*gc**skt
wscflvs**nvyiatl*rsifkls*yhlkskfs*nrfnq*rlshwrsr*nfkskenyfhr
ftrfrakn*t*preivg*yscgsilsvh**snfvydeskgigigfisdsnr*tlctl*dl
wc*ccrsygnsnv**kg*ikiilfpl*ng*rfgrtnsfekysknprikwylclgwyqvcy
dsnryyklkfertil*igsfig*rfnvfrstnl*tm*shsltnr*ri*fpsrt*pkvw*s
**ivtlyi*s*sw*yl*fsfrmcnrrndh*slk*yskildklpl***l*fsftikrkikk
*s*wsfsya**ffkeiiinyk**iinnk**iiiinniifkk*nfknr*kk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12032-1 (Contig-U12032-1Q)
/CSM_Contig/Contig-U12032-1Q.Seq.d
         (2339 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Conti...  2746  0.0
Contig-U11407-1 (Contig-U11407-1Q) /CSM_Contig/Conti...    40  0.011
Contig-U11288-1 (Contig-U11288-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U14355-1 (Contig-U14355-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U12272-1 (Contig-U12272-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U11244-1 (Contig-U11244-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U04646-1 (Contig-U04646-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U03180-1 (Contig-U03180-1Q) /CSM_Contig/Conti...    36  0.17

>Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Contig-U12032-1Q.Seq.d
          Length = 2339

 Score = 2746 bits (1385), Expect = 0.0
 Identities = 1433/1442 (99%)
 Strand = Plus / Plus

                                                                        
Query: 793  tctgatagaggtactcaagttaagtcaataactaatcctgtaaatagtttatcaaaatat 852
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  tctgatagaggtactcaagttaagtcaataactaatcctgtaaatagtttatcaaaatat 852

                                                                        
Query: 853  attaataatagttctttggattattcgatnnnnnnnnnctataccttggaggaaatttac 912
            |||||||||||||||||||||||||||||         ||||||||||||||||||||||
Sbjct: 853  attaataatagttctttggattattcgataaaaaaaaactataccttggaggaaatttac 912

                                                                        
Query: 913  gaaaataacaaaaactatatggataaaaccaataattttttacactttttatttacattt 972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  gaaaataacaaaaactatatggataaaaccaataattttttacactttttatttacattt 972

                                                                        
Query: 973  attgataaaactacaatcaaagacttggaacattttgaaaaggaaataagtagagttcat 1032
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973  attgataaaactacaatcaaagacttggaacattttgaaaaggaaataagtagagttcat 1032

                                                                        
Query: 1033 aatatcgaaaaattaatcaacgaacaaaatgttaaaggtgaaactccacttcactcatta 1092
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 aatatcgaaaaattaatcaacgaacaaaatgttaaaggtgaaactccacttcactcatta 1092

                                                                        
Query: 1093 attctttataattcnnnnnnnnnncttcaagttaaagtttcagccgatgaacaattggat 1152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 attctttataattcnnnnnnnnnncttcaagttaaagtttcagccgatgaacaattggat 1152

                                                                        
Query: 1153 actcatttcacattgattgaaactgttccaagggatagattctatgaactatccaatcaa 1212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1153 actcatttcacattgattgaaactgttccaagggatagattctatgaactatccaatcaa 1212

                                                                        
Query: 1213 caaccaatgaaatcaaaattcacaaaagaacaacttgctcaaagaattaaaggtgaggct 1272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1213 caaccaatgaaatcaaaattcacaaaagaacaacttgctcaaagaattaaaggtgaggct 1272

                                                                        
Query: 1273 gttagtgatccaagacatggtcatgttttcttgtatcttgataaaacgtttacattgcca 1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1273 gttagtgatccaagacatggtcatgttttcttgtatcttgataaaacgtttacattgcca 1332

                                                                        
Query: 1333 cgttatgacgctcaattttcaaactatcgtgatatcatctcaaatctaaatttagttaga 1392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 cgttatgacgctcaattttcaaactatcgtgatatcatctcaaatctaaatttagttaga 1392

                                                                        
Query: 1393 accgttttaatcaatgaagactatctcactggcgctccagatgaaatttcaaatcaaaag 1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 accgttttaatcaatgaagactatctcactggcgctccagatgaaatttcaaatcaaaag 1452

                                                                        
Query: 1453 aaaactattttcatagattcaccaggtttcgagccaaaaactgaacatgacccagagaaa 1512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 aaaactattttcatagattcaccaggtttcgagccaaaaactgaacatgacccagagaaa 1512

                                                                        
Query: 1513 ttgttgggtagtattcgtgtggttcaattctttcagtccactagtgatctaactttgttt 1572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 ttgttgggtagtattcgtgtggttcaattctttcagtccactagtgatctaactttgttt 1572

                                                                        
Query: 1573 atgatgaaagcaaaggaattggcattggtttcatctcagattcaaatcgttgaactttgt 1632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 atgatgaaagcaaaggaattggcattggtttcatctcagattcaaatcgttgaactttgt 1632

                                                                        
Query: 1633 gtactctataagacctatggtgctgatgttgtcgatcatatggtaactcaaatgtttaat 1692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1633 gtactctataagacctatggtgctgatgttgtcgatcatatggtaactcaaatgtttaat 1692

                                                                        
Query: 1693 aaaaagggtgaatcaaaatcattcttttccctctttgaaatggttaaaggtttggtagaa 1752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 aaaaagggtgaatcaaaatcattcttttccctctttgaaatggttaaaggtttggtagaa 1752

                                                                        
Query: 1753 caaattcgtttgaaaaatattccaaaaacccaagaatcaaatggtacctctgtttgggat 1812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 caaattcgtttgaaaaatattccaaaaacccaagaatcaaatggtacctctgtttgggat 1812

                                                                        
Query: 1813 ggtatcaagtttgttatgactcaaatcgatactataaactcaaatttgaaagaacaatac 1872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 ggtatcaagtttgttatgactcaaatcgatactataaactcaaatttgaaagaacaatac 1872

                                                                        
Query: 1873 tttgaattgggtcgtttattgggtaaaggtttaatgtttttagatccaccaacctataga 1932
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 tttgaattgggtcgtttattgggtaaaggtttaatgtttttagatccaccaacctataga 1932

                                                                        
Query: 1933 caatgtaaagccatagccttaccaatcgatagagaatttagttcccctcaagaacgtagc 1992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 caatgtaaagccatagccttaccaatcgatagagaatttagttcccctcaagaacgtagc 1992

                                                                        
Query: 1993 caaaagtgtggtgatcttgatgaattgttacattatatatataatcttaatcgtggtagt 2052
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 caaaagtgtggtgatcttgatgaattgttacattatatatataatcttaatcgtggtagt 2052

                                                                        
Query: 2053 acctataattctcgtttagaatgtgcaatcgaagaaatgaccactgatctcttaaataat 2112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 acctataattctcgtttagaatgtgcaatcgaagaaatgaccactgatctcttaaataat 2112

                                                                        
Query: 2113 attcaaagatcttggacaaattacctctttaatagtgattataatttagttttacaatta 2172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 attcaaagatcttggacaaattacctctttaatagtgattataatttagttttacaatta 2172

                                                                        
Query: 2173 aaagaaagatcaaaaaatagagttagtggtccttctcatatgcatagtaattctttaagg 2232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 aaagaaagatcaaaaaatagagttagtggtccttctcatatgcatagtaattctttaagg 2232

              
Query: 2233 ag 2234
            ||
Sbjct: 2233 ag 2234


 Score =  704 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 203 ctcttattataaaaacgtgatggataaaatatatgctaaagaaaaggatgtgctttctat 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctcttattataaaaacgtgatggataaaatatatgctaaagaaaaggatgtgctttctat 262

                                                                       
Query: 263 aaacaaagattttcaagagaataacttgacaagaatatctcttatattgaattataaaga 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaacaaagattttcaagagaataacttgacaagaatatctcttatattgaattataaaga 322

                                                                       
Query: 323 ttttttaccttaaatttgatgagagcctccatggttattcatttggatatgtaactaacc 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttttttaccttaaatttgatgagagcctccatggttattcatttggatatgtaactaacc 382

                                                                       
Query: 383 tttttggtttaaaactctactcgccatttactgaaactgtccgctttgatgatactgaaa 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttttggtttaaaactctactcgccatttactgaaactgtccgctttgatgatactgaaa 442

                                                                       
Query: 443 aatatatgaagacaattcttggtgttcccagtaatgaggctctcccacaactttgtagcg 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatatatgaagacaattcttggtgttcccagtaatgaggctctcccacaactttgtagcg 502

                                                                  
Query: 503 atcaacatcaagattttgaagaaaaagatccacaaatagaaatactaccatctcc 557
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atcaacatcaagattttgaagaaaaagatccacaaatagaaatactaccatctcc 557


 Score =  198 bits (100), Expect = 2e-50
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 668 ttacaccacctccatcacctccattacttccaatacctcaaccaccagcacaaaatgaag 727
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttacaccacctccatcacctccattacttccaatacctcaaccaccagcacaaaatgaag 727

                                                   
Query: 728 aacaacaacttacacaacctccatcaattccaccacctca 767
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aacaacaacttacacaacctccatcaattccaccacctca 767


 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 728 aacaacaacttacacaacctccatca 753
           ||||||||||||||| ||||||||||
Sbjct: 659 aacaacaacttacaccacctccatca 684


>Contig-U11407-1 (Contig-U11407-1Q) /CSM_Contig/Contig-U11407-1Q.Seq.d
          Length = 2168

 Score = 40.1 bits (20), Expect = 0.011
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1002 acattttgaaaaggaaataa 1021
            ||||||||||||||||||||
Sbjct: 393  acattttgaaaaggaaataa 374


>Contig-U11288-1 (Contig-U11288-1Q) /CSM_Contig/Contig-U11288-1Q.Seq.d
          Length = 3111

 Score = 38.2 bits (19), Expect = 0.042
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1002 acattttgaaaaggaaata 1020
            |||||||||||||||||||
Sbjct: 1042 acattttgaaaaggaaata 1060


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,686
Number of Sequences: 6905
Number of extensions: 23686
Number of successful extensions: 2351
Number of sequences better than 10.0: 69
length of query: 2339
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2323
effective length of database: 5,564,391
effective search space: 12926080293
effective search space used: 12926080293
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.28
Homology vs DNA 
Query= Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Contig-U12032-1Q.Seq.d
         (2339 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ403553) Dictyostelium discoideum cDNA clone:dds25b18, 3' ...  1348   0.0    1
(BJ347179) Dictyostelium discoideum cDNA clone:dda26h10, 3' ...  1318   0.0    1
(BJ352437) Dictyostelium discoideum cDNA clone:dda46b21, 3' ...  1314   0.0    1
(BJ378630) Dictyostelium discoideum cDNA clone:ddc32h10, 3' ...  1308   0.0    1
(BJ385726) Dictyostelium discoideum cDNA clone:ddc55o19, 3' ...  1306   0.0    1
(BJ350158) Dictyostelium discoideum cDNA clone:dda38n20, 3' ...  1292   0.0    1
(BJ379160) Dictyostelium discoideum cDNA clone:ddc33p24, 3' ...  1273   0.0    1
(BJ385950) Dictyostelium discoideum cDNA clone:ddc56m18, 3' ...  1251   0.0    1
(BJ380607) Dictyostelium discoideum cDNA clone:ddc38p17, 3' ...  1249   0.0    1
(BJ355459) Dictyostelium discoideum cDNA clone:dda57l06, 3' ...  1243   0.0    1
(BJ379969) Dictyostelium discoideum cDNA clone:ddc36h14, 3' ...  1237   0.0    1
(BJ349816) Dictyostelium discoideum cDNA clone:dda37a23, 3' ...  1235   0.0    1
(BJ382692) Dictyostelium discoideum cDNA clone:ddc45g18, 3' ...  1231   0.0    1
(BJ385376) Dictyostelium discoideum cDNA clone:ddc54b22, 3' ...  1207   0.0    1
(BJ384451) Dictyostelium discoideum cDNA clone:ddc49c13, 3' ...  1207   0.0    1
(BJ403371) Dictyostelium discoideum cDNA clone:dds24m20, 3' ...  1164   0.0    1
(BJ353103) Dictyostelium discoideum cDNA clone:dda49b05, 3' ...  1160   0.0    1
(BJ347726) Dictyostelium discoideum cDNA clone:dda31a01, 3' ...  1154   0.0    1
(BJ445501) Dictyostelium discoideum cDNA clone:ddv59l14, 3' ...  1128   0.0    1
(BJ358221) Dictyostelium discoideum cDNA clone:dda43m04, 3' ...  1128   0.0    1
(BJ383154) Dictyostelium discoideum cDNA clone:ddc52e02, 3' ...  1082   0.0    1
(BJ382238) Dictyostelium discoideum cDNA clone:ddc44g01, 3' ...   672   0.0    2
(BJ381950) Dictyostelium discoideum cDNA clone:ddc43n09, 3' ...   999   0.0    1
(BJ382065) Dictyostelium discoideum cDNA clone:ddc43d21, 3' ...   981   0.0    1
(BJ392405) Dictyostelium discoideum cDNA clone:dds27d15, 5' ...   426   0.0    3
(BJ334231) Dictyostelium discoideum cDNA clone:dda45h18, 5' ...   416   0.0    3
(BJ368452) Dictyostelium discoideum cDNA clone:ddc46e22, 5' ...   349   0.0    3
(BJ395232) Dictyostelium discoideum cDNA clone:dds38i03, 5' ...   430   0.0    3
(BJ397639) Dictyostelium discoideum cDNA clone:dds47d02, 5' ...   456   0.0    3
(BJ330524) Dictyostelium discoideum cDNA clone:dda31h22, 5' ...   333   0.0    3
(BJ335163) Dictyostelium discoideum cDNA clone:dda49m05, 5' ...   589   0.0    2
(BJ352945) Dictyostelium discoideum cDNA clone:dda48p07, 3' ...   456   0.0    2
(BJ391725) Dictyostelium discoideum cDNA clone:dds24p19, 5' ...   448   e-180  2
(BJ330480) Dictyostelium discoideum cDNA clone:dda31o14, 5' ...   335   e-179  3
(BJ339282) Dictyostelium discoideum cDNA clone:dda64d22, 5' ...   311   e-167  3
(BJ438618) Dictyostelium discoideum cDNA clone:ddv38a01, 3' ...   311   7e-80  1
(BJ338537) Dictyostelium discoideum cDNA clone:dda61m21, 5' ...   161   3e-45  2
(BJ438879) Dictyostelium discoideum cDNA clone:ddv38b24, 3' ...   172   4e-38  1
(AC026831) Homo sapiens clone RP11-73B8, WORKING DRAFT SEQUE...    38   0.013  10
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet...    42   0.044  22
(CR392029) Zebrafish DNA sequence from clone DKEY-188H10 in ...    40   0.053  5
(AC122334) Mus musculus BAC clone RP23-349H2 from chromosome...    52   0.098  1
(AC079164) Mus musculus strain C57BL6/J chromosome 12 clone ...    52   0.098  1
(AP004128) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.46   6
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ...    42   0.50   23
(CG067536) PUJAR20TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    40   0.76   2
(BX248505) Zebrafish DNA sequence from clone CH211-87L2 in l...    38   0.81   2
(CT027833) Zebrafish DNA sequence from clone ZFOS-207B3 in l...    38   0.91   2
(U80450) Caenorhabditis elegans cosmid M01E11, complete sequ...    38   1.1    4
(DJ386720) Diagnosis of Diseases Associated with Metastasis.       44   1.3    2
(AX281516) Sequence 180 from Patent WO0177376.                     44   1.3    2
(EF420157) Tanapox virus isolate TPV-RoC, complete genome.         36   1.3    9
(EF420156) Tanapox virus isolate TPV-Kenya, complete genome.       36   1.3    9
(AC176072) Strongylocentrotus purpuratus clone R3-3024C18, W...    40   1.5    6
(Z93375) Caenorhabditis elegans Cosmid C38C6.                      48   1.5    1
(AC152460) Atelerix albiventris clone LB4-35D1, WORKING DRAF...    48   1.5    1
(AC184744) Felis catus clone RP86-330K3, WORKING DRAFT SEQUE...    48   1.5    1
(AC183857) Atelerix albiventris clone LB4-514B20, WORKING DR...    48   1.5    1
(AC175007) Atelerix albiventris clone LB4-206A16, WORKING DR...    48   1.5    1
(AC173922) Atelerix albiventris clone LB4-228M2, WORKING DRA...    48   1.5    1
(AC173921) Atelerix albiventris clone LB4-217O18, WORKING DR...    48   1.5    1
(AC171755) Atelerix albiventris clone LB4-201L15, WORKING DR...    48   1.5    1
(ER319451) 1092344166316 Global-Ocean-Sampling_GS-34-01-01-1...    48   1.5    1
(EK421937) 1095515516810 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.5    1
(DE422140) Bombyx mori genomic DNA, Fosmid clone:GBMFno3_a17...    48   1.5    1
(AV815736) Arabidopsis thaliana cDNA clone:RAFL09-87-M05, 3'...    48   1.5    1
(BJ394157) Dictyostelium discoideum cDNA clone:dds34d01, 5' ...    38   2.0    2
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    38   2.1    20
(AX347089) Sequence 2160 from Patent WO0200928.                    44   2.6    2
(EJ039539) 1095454085235 Global-Ocean-Sampling_GS-26-01-01-1...    44   3.0    2
(EK312886) 1095462403229 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.2    2
(ER437134) 1092963800991 Global-Ocean-Sampling_GS-35-01-01-1...    40   3.2    2
(EK315895) 1095462412829 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.4    2
(BS000062) Pan troglodytes chromosome 22 clone:PTB-045C17, m...    36   3.5    9
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   3.5    16
(AC189540) Brassica rapa subsp. pekinensis clone KBrH003N18,...    34   4.0    8
(BX649487) Zebrafish DNA sequence from clone DKEY-148C4 in l...    40   4.4    7
(AC079841) Homo sapiens 3 BAC RP11-10G15 (Roswell Park Cance...    36   4.8    10
(ED518404) KBrB104E04F KBrB, Brassica rapa BamHI BAC library...    34   5.0    3
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   5.1    15
(AL929108) Zebrafish DNA sequence from clone CH211-239J9 in ...    46   6.0    1
(AL645603) Mouse DNA sequence from clone RP23-299L18 on chro...    46   6.0    1
(AC168073) Mus musculus BAC clone RP23-60N8 from chromosome ...    46   6.0    1
(AC129293) Mus musculus BAC clone RP24-535M14 from chromosom...    46   6.0    1
(AC127353) Mus musculus BAC clone RP23-81P21 from chromosome...    46   6.0    1
(AC124383) Mus musculus BAC clone RP24-411E14 from chromosom...    46   6.0    1
(AC007550) Mus musculus strain 129S6/SvEvTac chromosome 11a2...    46   6.0    1
(AL353698) Human DNA sequence from clone RP13-188A5 on chrom...    46   6.0    1
(AC124319) Homo sapiens chromosome 17, clone CTD-2047H16, co...    46   6.0    1
(AC160556) Mus musculus chromosome 1 clone RP23-436C5 map 1,...    46   6.0    1
(AC134688) Homo sapiens chromosome 17 clone RP11-1387N21 map...    46   6.0    1
(AC127508) Homo sapiens chromosome 17 clone RP13-994H5 map 1...    46   6.0    1
(AC126541) Homo sapiens chromosome 17 clone RP13-182B6 map 1...    46   6.0    1
(AC119765) Rattus norvegicus clone CH230-271G22, WORKING DRA...    46   6.0    1
(AC098429) Rattus norvegicus clone CH230-2I15, *** SEQUENCIN...    46   6.0    1
(CU915401) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   6.0    1
(AC026683) Mus musculus chromosome 7 clone RP23-309E15, WORK...    46   6.0    1
(AC221757) Bos taurus clone CH240-386F2, WORKING DRAFT SEQUE...    46   6.0    1
(AC219840) Bos taurus clone CH240-320J21, WORKING DRAFT SEQU...    46   6.0    1
(AC172998) Bos taurus clone CH240-439M23, WORKING DRAFT SEQU...    46   6.0    1

>(BJ403553) Dictyostelium discoideum cDNA clone:dds25b18, 3' end,
            single read.
          Length = 736

 Score = 1348 bits (680), Expect = 0.0
 Identities = 683/684 (99%)
 Strand = Plus / Minus


Query: 1551 cactagtgatctaactttgtttatgatgaaagcaaaggaattggcattggtttcatctca 1610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  cactagtgatctaactttgtttatgatgaaagcaaaggaattggcattggtttcatctca 677


Query: 1611 gattcaaatcgttgaactttgtgtactctataagacctatggtgctgatgttgtcgatca 1670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  gattcaaatcgttgaactttgtgtactctataagacctatggtgctgatgttgtcgatca 617


Query: 1671 tatggtaactcaaatgtttaataaaaagggtgaatcaaaatcattcttttccctctttga 1730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  tatggtaactcaaatgtttaataaaaagggtgaatcaaaatcattcttttccctctttga 557


Query: 1731 aatggttaaaggtttggtagaacaaattcgtttgaaaaatattccaaaaacccaagaatc 1790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  aatggttaaaggtttggtagaacaaattcgtttgaaaaatattccaaaaacccaagaatc 497


Query: 1791 aaatggtacctctgtttgggatggtatcaagtttgttatgactcaaatcgatactataaa 1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  aaatggtacctctgtttgggatggtatcaagtttgttatgactcaaatcgatactataaa 437


Query: 1851 ctcaaatttgaaagaacaatactttgaattgggtcgtttattgggtaaaggtttaatgtt 1910
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  ctcaaatttgaaagcacaatactttgaattgggtcgtttattgggtaaaggtttaatgtt 377


Query: 1911 tttagatccaccaacctatagacaatgtaaagccatagccttaccaatcgatagagaatt 1970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376  tttagatccaccaacctatagacaatgtaaagccatagccttaccaatcgatagagaatt 317


Query: 1971 tagttcccctcaagaacgtagccaaaagtgtggtgatcttgatgaattgttacattatat 2030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316  tagttcccctcaagaacgtagccaaaagtgtggtgatcttgatgaattgttacattatat 257


Query: 2031 atataatcttaatcgtggtagtacctataattctcgtttagaatgtgcaatcgaagaaat 2090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256  atataatcttaatcgtggtagtacctataattctcgtttagaatgtgcaatcgaagaaat 197


Query: 2091 gaccactgatctcttaaataatattcaaagatcttggacaaattacctctttaatagtga 2150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196  gaccactgatctcttaaataatattcaaagatcttggacaaattacctctttaatagtga 137


Query: 2151 ttataatttagttttacaattaaaagaaagatcaaaaaatagagttagtggtccttctca 2210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136  ttataatttagttttacaattaaaagaaagatcaaaaaatagagttagtggtccttctca 77


Query: 2211 tatgcatagtaattctttaaggag 2234
            ||||||||||||||||||||||||
Sbjct: 76   tatgcatagtaattctttaaggag 53

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,354,788,723
Number of extensions: 141364212
Number of successful extensions: 11990794
Number of sequences better than 10.0: 125
Length of query: 2339
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2315
Effective length of database: 97,308,875,965
Effective search space: 225270047858975
Effective search space used: 225270047858975
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Contig-U12032-1Q.Seq.d
         (2339 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54EM1) RecName: Full=Probable serine/threonine-protein kinase ...   353   e-118
(Q54EG9) RecName: Full=Probable serine/threonine-protein kinase ...   239   3e-77
AL031745_67(AL031745|pid:none) Plasmodium falciparum DNA from MA...    40   0.50
AL844509_364(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.65
CP000923_1678(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    39   0.85
AL844506_48(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    38   1.9
AE014188_151(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.5
AE017226_2667(AE017226|pid:none) Treponema denticola ATCC 35405,...    37   3.2
AL844505_247(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    37   3.2
CP001087_567(CP001087|pid:none) Desulfobacterium autotrophicum H...    37   3.2
AE014185_122(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    37   4.2
BA000016_1716(BA000016|pid:none) Clostridium perfringens str. 13...    36   5.5
AE014187_702(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.5
CP000246_1928(CP000246|pid:none) Clostridium perfringens ATCC 13...    36   5.5
AL929358_25(AL929358|pid:none) Plasmodium falciparum strain 3D7,...    36   5.5
AL844507_231(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    36   7.2
AL844505_76(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    36   7.2
CP000813_2231(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    36   7.2
AB090333_4(AB090333|pid:none) Clostridium sordellii genes for co...    36   7.2
AL844509_246(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   7.2
CP000361_784(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    36   7.2
AM999887_1219(AM999887|pid:none) Wolbachia endosymbiont of Culex...    36   7.2
EF028068_1(EF028068|pid:none) Felis catus centrosomal protein ce...    36   7.2
EF426473_1(EF426473|pid:none) Paulownia witches'-broom phytoplas...    35   9.4
CP001078_2691(CP001078|pid:none) Clostridium botulinum E3 str. A...    35   9.4

>(Q54EM1) RecName: Full=Probable serine/threonine-protein kinase
            DDB_G0291664;          EC=2.7.11.1;
          Length = 959

 Score =  353 bits (905), Expect(2) = e-118
 Identities = 188/266 (70%), Positives = 190/266 (71%)
 Frame = +1

Query: 340  DESLHGYSFGYVTNLFGLKLYSPFTETVRFDDTEKYMKTILGVPSNEALPQLCSDQHQDF 519
            DESLHGYSFGYVTNLFGLKLYSPFTETVRFDDTEKYMKTILGVPSNEALPQLCSDQHQ+F
Sbjct: 52   DESLHGYSFGYVTNLFGLKLYSPFTETVRFDDTEKYMKTILGVPSNEALPQLCSDQHQNF 111

Query: 520  EEKDPQIEILPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 699
            EEKDPQIEILPSP
Sbjct: 112  EEKDPQIEILPSPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLTPPPSPPLLP 171

Query: 700  XXXXXAQNEEQQLTXXXXXXXXXXXXXXXXXXDRGTQVKSITNPVNSLSKYINNSSLDYS 879
                 AQNEEQQLT                  DRGTQVKSITNPVNSLSKYINNSSLDYS
Sbjct: 172  IPQPPAQNEEQQLTQPPSIPPPQQKQIKIQKSDRGTQVKSITNPVNSLSKYINNSSLDYS 231

Query: 880  IKKNYTLEEIYENNKNYMDKTNNFLHFLFTFIDKTTIKDLEHFEKEISRVHNIEKLINEQ 1059
            IKKNYTLEEIYENNKNYMDKTNNFLHFLFTFIDKTTIKDLEHFEKEISRVHNIEKLINEQ
Sbjct: 232  IKKNYTLEEIYENNKNYMDKTNNFLHFLFTFIDKTTIKDLEHFEKEISRVHNIEKLINEQ 291

Query: 1060 NVKGETPLHSLILYNSXXXLQVKVSA 1137
            NVKGETPLHSLILYNS   L+  V A
Sbjct: 292  NVKGETPLHSLILYNSESCLKKLVIA 317

 Score = 97.1 bits (240), Expect(2) = e-118
 Identities = 47/47 (100%), Positives = 47/47 (100%)
 Frame = +3

Query: 186 MESKKNSYYKNVMDKIYAKEKDVLSINKDFQENNLTRISLILNYKDF 326
           MESKKNSYYKNVMDKIYAKEKDVLSINKDFQENNLTRISLILNYKDF
Sbjct: 1   MESKKNSYYKNVMDKIYAKEKDVLSINKDFQENNLTRISLILNYKDF 47

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,857,698,942
Number of extensions: 55332505
Number of successful extensions: 181701
Number of sequences better than 10.0: 25
Number of HSP's gapped: 181403
Number of HSP's successfully gapped: 29
Length of query: 779
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 642
Effective length of database: 607,772,281
Effective search space: 390189804402
Effective search space used: 390189804402
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.85  gvh: 0.51  alm: 0.35  top: 0.37  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for Contig-U12032-1 is cyt
VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 14
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 8
SF (FL, S) 0
CH (FL, L) 14
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0