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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12014-1
Contig ID Contig-U12014-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Contig-U12014-1Q.Seq.d
TGCTCAACAAAAAGCTGCTGCTATTGCTGCTCAACAAGCATCTCAGCAAC
AAGCATCTCAACAACAACAACAACAATTACAACCACCACAACCAATTGGT
ATTCACCATCATCCACAACGTCATTTACCACCAGGTATGATGCCTCCTGG
AATGATGCCACCTGGAATGATGCCACCAGGTATGATGCCACCTGGAATGG
TACCACCACCACCATTTGGTATGATTCCACCTGGAATGGTACCACCACCA
CCACCAGGTTTAATGATACCAACTGCACCTCCAGGATTAATGATACCACC
AACACAACAACAACAATTACCTCCCCAAACAAATACATCCCCATCCTCAT
CCTCTTCAATTAAAGTTGAAGAACCTCAATCTAAAAAGTTAAAGATTGAT
GATGTATTAATTCCTGAATCAGTTTGGTTACAAAATAATCCAAACCCTGT
CAATTTAACAGTAGAAATGGCTGATAAAAGTAATATTTATCAAATTACAC
TTCAACCAACCGATAGTATATCTTTATTAAAAGAGAAAATTAAAGAACTT
AATGGTATGCCAACTAATAAACAAAAATTACAAGCTCCTGGTTTATCAAT
TTTAAAAGATACTTGTAGTATAGCTTTTTATAATTTAAAATCATTAGCAA
TAGTTACTTGTGGTCAAAAAGAAAGAGGCGGTAAAAAGAAATAGTAAATA
GATAAATAAATAAATAAAATAAAATAAAATAAA----------TTGACCA
CCTTTACCATTTGAACCATGACCATCATTATCGAAATCACTGCCACCAAA
TGGTGTATCACCAGCAATCAGTTGGTCAAATGTTNTTGGTTGTGGTAAGT
CGTCTAAATCATCCTCATTGAATTCAATGGTATCTACAATTACAAAATCA
TGCCAATCAATTGAGGCAATGATTGTTTTNTCCTCATCCTCACGCTCCTC
TTTCTTTTGTTCCTCAATCTCTTTGAGTTGATTATATTCACAACGATTCA
TTGCTCTCTCTAGAATGGTTTGTTTATTGGANAAATAGTTTGACNTTAAT
TGCTCCTTTANACCNTGTGGTGGATANATAATTTGAGCATAGGATTCTAC
CAATGCTNTAAACCATTCANACAAATGATTGGTTGGTTTTAAAAAATCAA
ATTGACTATTCTTTACTTCTCTACTTGCTAATTCCATAAAAAAACNATCA
CCATTTTTTGCAATAAATTGTGCTGTTAATCTAATTGTATCTAATTCTAA
TGGGGTCATAAAATCAGGTACATCTAAAATATATAAAAGTGGATCAGGTT
GTGTTGGTTCTTTTTTTGGTGGTGGTGGGGGTGGAGGTTGTGGTTTTTCA
AATACTGGTGTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTAGTTGTTG
AGTTGAATTTGTTTGAGGTACTGGTACTATAGTTGATGATGTTGTTGGAG
TTGGTGATGTTGTTGTTGCTGTTGCTGTTGGTAGTGGTGTTGTTGCTGTT
GTGGTTGTTGTTGTGGTGGTGGTAGTAGAAGGAGTTTTTGGATTTGCAGC
TGCGGCAGCTGCTGCTGCATCTGCTTGAATTTTTGCTTTATTCTCTACAA
TTTTATTTCTATAATAAGGATAATATTGATCTCCTTCTTTCATAAAATTA
AATTTTGCATTGTGTNCCTTCTCTTTGTTTAACTTTATTTTCAAAACTCT
CACCTAATTTTGCTGCATATGCTGCTGTTTTATCAATGATAGTTTTTAAT
TCACCTTCAGTAGGTGTAATTATTTCATTAGCCATTTTCCTTTTTTTTTT
TTCAACTCATCTATTGG
Gap gap included
Contig length 1807
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2020657
End point 2019183
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 12
Link to clone list U12014
List of clone(s) 

est1=AHF603Z,-2,728
est2=VHO826Z,8,728
est3=AHN594Z,67,690
est4=AHK646Z,73,725
est5=SLB503Z,82,733
est6=SFC882Z,87,697
est7=AHR140Z,97,632
est8=SFD352Z,99,725
est9=SFJ896F,104,711
est10=SLG514Z,240,734
est11=SFJ896Z,735,1266
est12=SLB503F,1197,1808
Translated Amino Acid sequence 
lnkkllllllnkhlsnkhlnnnnnnynhhnqlvftiihnviyhqv*clle*chle*chqv
*chlewyhhhhlv*fhlewyhhhhqv**yqlhlqd**yhqhnnnnylpkqihphphplql
klknlnlks*rlmmy*flnqfgykiiqtlsi*q*kwlikvifiklhfnqpivyly*krkl
knlmvcqlinknykllvyqf*kilvv*lfii*nh*q*llvvkkkeavkrnsk*ink*ik*
NKI---

---DHLYHLNHDHHYRNHCHQMVYHQQSVGQMXLVVVSRLNHPH*iqwylqlqnhanqlr
q*lfxphphaplsfvpqsl*vdyihndsllslewfvywxnsltliaplxxvvdx*fehri
lpml*tixtndwlvlknqidyslllyllip*knxhhflq*ivlli*lylilmgs*nqvhl
kyikvdqvvlvlflvvvgvevvvfqilvlfvvvvvvvvvvvelnlfevlvl*lmmllelv
mlllllllvvvllllwlllwww**kefldlqlrqlllhllefllyslqfyfynkdnidll
ls*n*ilhcvpslcltlfsklspnfaayaavlsmivfnspsvgviislaiflfffsthll
Translated Amino Acid sequence (All Frames) 
Frame A:
cstksccyccstsisatsistttttitttttnwyspssttsfttrydaswndatwndatr
ydatwngttttiwydstwngtttttrfndtnctsrindttnttttitspnkyipililfn
*s*rtsi*kvkd**cins*islvtk*skpcqfnsrng**k*ylsnytstnr*yifikren
*rt*wyan**tkitsswfinfkryl*ysfl*fkiisnsylwskrkrr*keivnr*ink*N
KIk*---

---lttfti*tmtiiieitatkwcitsnqlvkcxwlw*vv*iiliefngiynykimpin*
gndcfxliltllfllflnlfeliifttihcsl*nglfigxiv*x*lllxtxwwixnlsig
fyqcxkpfxqmigwf*kikltilyfstc*fhkktitifcnklcc*snci*f*wghkiryi
*ni*kwirlcwfffwwwwgwrlwffkywcclllllllll*lls*iclrywyys**ccwsw
*cccccccw*wcccccgcccgggsrrsfwicscgsccciclnfcfilynfisiiriilis
ffhkikfcivxllfv*lyfqnshlillhmllfyq**flihlq*v*lfh*pfsffffqliy
w

Frame B:
aqqkaaaiaaqqasqqqasqqqqqqlqppqpigihhhpqrhlppgmmppgmmppgmmppg
mmppgmvppppfgmippgmvpppppglmiptappglmipptqqqqlppqtntspsssssi
kveepqskklkiddvlipesvwlqnnpnpvnltvemadksniyqitlqptdsisllkeki
kelngmptnkqklqapglsilkdtcsiafynlkslaivtcgqkerggkkk**idk*iNKI
k*nk---

---*pplpfep*pslskslppngvspaiswsnvxgcgksskssslnsmvstitkscqsie
amivxssssrssffcssisls*lysqrfialsrmvcllxk*fdxncsfxpcggxii*a*d
stnaxnhsxk*lvgfkksn*lfftsllansikkxspffaincavnlivsnsngviksgts
kiyksgsgcvgsffgggggggcgfsntgvvcccccccccsc*vefv*gtgtivddvvgvg
dvvvavavgsgvvavvvvvvvvvvegvfgfaaaaaaaasa*ifalfstilfl**g*y*sp
sfiklnfalcxfslfnfifktlt*fccicccfindsf*ftfsrcnyfishfpffffnssi

Frame C:
lnkkllllllnkhlsnkhlnnnnnnynhhnqlvftiihnviyhqv*clle*chle*chqv
*chlewyhhhhlv*fhlewyhhhhqv**yqlhlqd**yhqhnnnnylpkqihphphplql
klknlnlks*rlmmy*flnqfgykiiqtlsi*q*kwlikvifiklhfnqpivyly*krkl
knlmvcqlinknykllvyqf*kilvv*lfii*nh*q*llvvkkkeavkrnsk*ink*ik*
NKI---

---DHLYHLNHDHHYRNHCHQMVYHQQSVGQMXLVVVSRLNHPH*iqwylqlqnhanqlr
q*lfxphphaplsfvpqsl*vdyihndsllslewfvywxnsltliaplxxvvdx*fehri
lpml*tixtndwlvlknqidyslllyllip*knxhhflq*ivlli*lylilmgs*nqvhl
kyikvdqvvlvlflvvvgvevvvfqilvlfvvvvvvvvvvvelnlfevlvl*lmmllelv
mlllllllvvvllllwlllwww**kefldlqlrqlllhllefllyslqfyfynkdnidll
ls*n*ilhcvpslcltlfsklspnfaayaavlsmivfnspsvgviislaiflfffsthll
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12014-1 (Contig-U12014-1Q)
/CSM_Contig/Contig-U12014-1Q.Seq.d
         (1817 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Conti...  1076  0.0
Contig-U13453-1 (Contig-U13453-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10251-1 (Contig-U10251-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U00945-1 (Contig-U00945-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U12763-1 (Contig-U12763-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U10874-1 (Contig-U10874-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U10863-1 (Contig-U10863-1Q) /CSM_Contig/Conti...    38  0.033

>Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Contig-U12014-1Q.Seq.d
          Length = 1817

 Score = 1076 bits (543), Expect = 0.0
 Identities = 601/615 (97%)
 Strand = Plus / Plus

                                                                        
Query: 744  ttgaccacctttaccatttgaaccatgaccatcattatcgaaatcactgccaccaaatgg 803
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  ttgaccacctttaccatttgaaccatgaccatcattatcgaaatcactgccaccaaatgg 803

                                                                        
Query: 804  tgtatcaccagcaatcagttggtcaaatgttnttggttgtggtaagtcgtctaaatcatc 863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804  tgtatcaccagcaatcagttggtcaaatgttnttggttgtggtaagtcgtctaaatcatc 863

                                                                        
Query: 864  ctcattgaattcaatggtatctacaattacaaaatcatgccaatcaattgaggcaatgat 923
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  ctcattgaattcaatggtatctacaattacaaaatcatgccaatcaattgaggcaatgat 923

                                                                        
Query: 924  tgttttntcctcatcctcacgctcctctttcttttgttcctcaatctctttgagttgatt 983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  tgttttntcctcatcctcacgctcctctttcttttgttcctcaatctctttgagttgatt 983

                                                                        
Query: 984  atattcacaacgattcattgctctctctagaatggtttgtttattgganaaatagtttga 1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  atattcacaacgattcattgctctctctagaatggtttgtttattgganaaatagtttga 1043

                                                                        
Query: 1044 cnttaattgctcctttanaccntgtggtggatanataatttgagcataggattctaccaa 1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 cnttaattgctcctttanaccntgtggtggatanataatttgagcataggattctaccaa 1103

                                                                        
Query: 1104 tgctntaaaccattcanacaaatgattggttggttttaaaaaatcaaattgactattctt 1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 tgctntaaaccattcanacaaatgattggttggttttaaaaaatcaaattgactattctt 1163

                                                                        
Query: 1164 tacttctctacttgctaattccatnnnnnnncnatcaccattttttgcaataaattgtgc 1223
            ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 1164 tacttctctacttgctaattccataaaaaaacnatcaccattttttgcaataaattgtgc 1223

                                                                        
Query: 1224 tgttaatctaattgtatctaattctaatggggtcataaaatcaggtacatctaaaatata 1283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 tgttaatctaattgtatctaattctaatggggtcataaaatcaggtacatctaaaatata 1283

                                                                        
Query: 1284 taaaagtggatcaggttgtgttggttcnnnnnnnggtggtggtgggggtggaggttgtgg 1343
            |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 1284 taaaagtggatcaggttgtgttggttctttttttggtggtggtgggggtggaggttgtgg 1343

                           
Query: 1344 tttttcaaatactgg 1358
            |||||||||||||||
Sbjct: 1344 tttttcaaatactgg 1358


 Score =  842 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Plus

                                                                       
Query: 257 ggtttaatgataccaactgcacctccaggattaatgataccaccaacacaacaacaacaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtttaatgataccaactgcacctccaggattaatgataccaccaacacaacaacaacaa 316

                                                                       
Query: 317 ttacctccccaaacaaatacatccccatcctcatcctcttcaattaaagttgaagaacct 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttacctccccaaacaaatacatccccatcctcatcctcttcaattaaagttgaagaacct 376

                                                                       
Query: 377 caatctaaaaagttaaagattgatgatgtattaattcctgaatcagtttggttacaaaat 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caatctaaaaagttaaagattgatgatgtattaattcctgaatcagtttggttacaaaat 436

                                                                       
Query: 437 aatccaaaccctgtcaatttaacagtagaaatggctgataaaagtaatatttatcaaatt 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatccaaaccctgtcaatttaacagtagaaatggctgataaaagtaatatttatcaaatt 496

                                                                       
Query: 497 acacttcaaccaaccgatagtatatctttattaaaagagaaaattaaagaacttaatggt 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acacttcaaccaaccgatagtatatctttattaaaagagaaaattaaagaacttaatggt 556

                                                                       
Query: 557 atgccaactaataaacaaaaattacaagctcctggtttatcaattttaaaagatacttgt 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atgccaactaataaacaaaaattacaagctcctggtttatcaattttaaaagatacttgt 616

                                                                       
Query: 617 agtatagctttttataatttaaaatcattagcaatagttacttgtggtcaaaaagaaaga 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agtatagctttttataatttaaaatcattagcaatagttacttgtggtcaaaaagaaaga 676

                
Query: 677 ggcgg 681
           |||||
Sbjct: 677 ggcgg 681


 Score =  523 bits (264), Expect = e-148
 Identities = 267/267 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1524 agtagaaggagtttttggatttgcagctgcggcagctgctgctgcatctgcttgaatttt 1583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 agtagaaggagtttttggatttgcagctgcggcagctgctgctgcatctgcttgaatttt 1583

                                                                        
Query: 1584 tgctttattctctacaattttatttctataataaggataatattgatctccttctttcat 1643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 tgctttattctctacaattttatttctataataaggataatattgatctccttctttcat 1643

                                                                        
Query: 1644 aaaattaaattttgcattgtgtnccttctctttgtttaactttattttcaaaactctcac 1703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 aaaattaaattttgcattgtgtnccttctctttgtttaactttattttcaaaactctcac 1703

                                                                        
Query: 1704 ctaattttgctgcatatgctgctgttttatcaatgatagtttttaattcaccttcagtag 1763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 ctaattttgctgcatatgctgctgttttatcaatgatagtttttaattcaccttcagtag 1763

                                       
Query: 1764 gtgtaattatttcattagccattttcc 1790
            |||||||||||||||||||||||||||
Sbjct: 1764 gtgtaattatttcattagccattttcc 1790


 Score =  210 bits (106), Expect = 4e-54
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 96  ttggtattcaccatcatccacaacgtcatttaccaccaggtatgatgcctcctggaatga 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ttggtattcaccatcatccacaacgtcatttaccaccaggtatgatgcctcctggaatga 155

                                                         
Query: 156 tgccacctggaatgatgccaccaggtatgatgccacctggaatggt 201
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tgccacctggaatgatgccaccaggtatgatgccacctggaatggt 201


 Score = 87.7 bits (44), Expect = 4e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                        
Query: 1401 agttgaatttgtttgaggtactggtactatagttgatgatgttg 1444
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 agttgaatttgtttgaggtactggtactatagttgatgatgttg 1444


 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  tgctcaacaaaaagctgctgctattgctgctc 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  tgctcaacaaaaagctgctgctattgctgctc 32


 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 128 ccaccaggtatgatgcctcctggaatgatgccacctggaatgatgccacca 178
           ||||| || |||||||| || || |||||||||||||||||| | ||||||
Sbjct: 158 ccacctggaatgatgccaccaggtatgatgccacctggaatggtaccacca 208


 Score = 38.2 bits (19), Expect = 0.033
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 179 ggtatgatgccacctggaatggt 201
           |||||||| ||||||||||||||
Sbjct: 218 ggtatgattccacctggaatggt 240


 Score = 34.2 bits (17), Expect = 0.51
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 294  taccaccaacacaacaacaac 314
            |||||||| ||||||||||||
Sbjct: 1524 taccaccaccacaacaacaac 1504


 Score = 34.2 bits (17), Expect = 0.51
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 304 acaacaacaacaattac 320
           |||||||||||||||||
Sbjct: 64  acaacaacaacaattac 80


 Score = 30.2 bits (15), Expect = 8.0
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 276 cacctccaggattaatgatacca 298
           |||| ||||| ||||||||||||
Sbjct: 249 caccaccaggtttaatgatacca 271


 Score = 30.2 bits (15), Expect = 8.0
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                      
Query: 152 atgatgccacctggaatgatgccacca 178
           ||||| |||||||||||| | ||||||
Sbjct: 221 atgattccacctggaatggtaccacca 247


>Contig-U13453-1 (Contig-U13453-1Q) /CSM_Contig/Contig-U13453-1Q.Seq.d
          Length = 1359

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 295 accaccaacacaacaacaacaa 316
           ||||||||||||||||||||||
Sbjct: 851 accaccaacacaacaacaacaa 872


>Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Contig-U12283-1Q.Seq.d
          Length = 1960

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 295 accaccaacacaacaacaacaatta 319
           ||||||| |||||||||||||||||
Sbjct: 915 accaccaccacaacaacaacaatta 939


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,309
Number of Sequences: 6905
Number of extensions: 29309
Number of successful extensions: 6863
Number of sequences better than 10.0: 438
length of query: 1817
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1801
effective length of database: 5,564,391
effective search space: 10021468191
effective search space used: 10021468191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.28
Homology vs DNA 
Query= Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Contig-U12014-1Q.Seq.d
         (1817 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...   827   0.0    8
(BJ445679) Dictyostelium discoideum cDNA clone:ddv60d08, 3' ...   811   0.0    3
(BJ351098) Dictyostelium discoideum cDNA clone:dda42e02, 3' ...   801   0.0    3
(BJ355993) Dictyostelium discoideum cDNA clone:dda58k23, 3' ...   811   0.0    2
(AU033837) Dictyostelium discoideum slug cDNA, clone SLB503.      811   0.0    2
(BJ354062) Dictyostelium discoideum cDNA clone:dda52k12, 3' ...   801   0.0    2
(BJ390040) Dictyostelium discoideum cDNA clone:dds20p24, 5' ...   795   0.0    2
(BJ402252) Dictyostelium discoideum cDNA clone:dds20p24, 3' ...   827   0.0    2
(BJ358003) Dictyostelium discoideum cDNA clone:dda65o09, 3' ...   692   0.0    3
(BJ399631) Dictyostelium discoideum cDNA clone:dds6d22, 3' e...   739   0.0    3
(BJ399812) Dictyostelium discoideum cDNA clone:dds7h13, 3' e...   773   0.0    2
(AU039825) Dictyostelium discoideum slug cDNA, clone SLG514.      775   0.0    1
(AU060790) Dictyostelium discoideum slug cDNA, clone SLB503.      523   0.0    3
(FF097570) CPAD-aac18d02.b1 PB2801_EST_CPAD1 Caenorhabditis ...    76   5e-09  1
(FF105015) CPAD-aad80c03.b1 PB2801_EST_CPAD1 Caenorhabditis ...    64   2e-05  1
(DT608119) ACAG-aaa44h11.g1 Hydra_EST_UCI-9 Hydra magnipapil...    44   1e-04  2
(AF038605) Caenorhabditis elegans cosmid C02B10, complete se...    60   3e-04  1
(EC023886) 3857422 KZ41 Caenorhabditis elegans cDNA clone 17...    60   3e-04  1
(CB395139) OSTR149E1_1 AD-wrmcDNA Caenorhabditis elegans cDN...    60   3e-04  1
(DY584025) C017-D11 Acropora millepora presettlement library...    58   0.001  1
(CJ336144) Molgula tectiformis cDNA, embryo just before hatc...    48   0.002  3
(CJ407176) Molgula tectiformis cDNA, gonad clone:mtgd028d19,...    48   0.002  3
(CJ361224) Molgula tectiformis cDNA, cleaving embryo clone:m...    48   0.002  3
(CJ414463) Molgula tectiformis cDNA, larva clone:mtlv018k16,...    48   0.002  3
(CJ423627) Molgula tectiformis cDNA, larva clone:mtlv018k16,...    48   0.003  3
(AC197508) Macaca mulatta chromosome 16 clone CH250-68I11, W...    38   0.013  2
(BW829917) Branchiostoma floridae cDNA, larva clone:bflv039j...    46   0.016  2
(CA370197) 650311 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ...    54   0.019  1
(EV374329) EST_oner_rge_672792 onerrge mixed_tissue Oncorhyn...    54   0.019  1
(CJ350787) Molgula tectiformis cDNA, cleaving embryo clone:m...    48   0.030  2
(CJ416447) Molgula tectiformis cDNA, larva clone:mtlv024j02,...    48   0.033  2
(AM754859) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.036  3
(CJ425659) Molgula tectiformis cDNA, larva clone:mtlv024j02,...    48   0.037  2
(CJ420827) Molgula tectiformis cDNA, larva clone:mtlv005i13,...    48   0.040  2
(AC160574) Bos taurus clone CH240-93E10, WORKING DRAFT SEQUE...    38   0.047  2
(BM803397) AGENCOURT_6446998 NIH_MGC_71 Homo sapiens cDNA cl...    38   0.059  2
(CF995098) AGENCOURT_15621088 NIH_MGC_147 Homo sapiens cDNA ...    38   0.060  2
(BQ226302) AGENCOURT_7572744 NIH_MGC_92 Homo sapiens cDNA cl...    38   0.060  2
(EW684914) LB02743.CR.1_K20 GC_BGC-27 Bos taurus cDNA clone ...    38   0.060  2
(AW752116) RC0-CT0160-130999-001-H02 CT0160 Homo sapiens cDN...    40   0.061  2
(ER351813) 1092347004003 Global-Ocean-Sampling_GS-34-01-01-1...    52   0.076  1
(ER328591) 1092344235614 Global-Ocean-Sampling_GS-34-01-01-1...    52   0.076  1
(EL560271) EST_otsh_rgd_2711 otshrgd mixed_tissue Oncorhynch...    52   0.076  1
(CU427322) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    36   0.086  3
(BM902145) rc32f09.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    40   0.087  2
(DT606659) ACAG-aaa35d03.g1 Hydra_EST_UCI-9 Hydra magnipapil...    44   0.092  2
(AM755808) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.099  3
(CJ396398) Molgula tectiformis cDNA, gonad clone:mtgd028d19,...    46   0.10   2
(CU426558) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    36   0.11   3
(EJ919588) 1093018595438 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.11   2
(AM750270) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.12   3
(AM753488) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.12   3
(AM758411) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.12   3
(AM751850) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.13   3
(AM751814) Clytia hemisphaerica EST, 5' end sequence, clone ...    36   0.13   3
(EJ871222) 1093018348227 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.14   2
(AL591146) Mouse DNA sequence from clone RP23-252E4 on chrom...    38   0.17   2
(AB209215) Homo sapiens mRNA for zinc finger protein 207 var...    38   0.21   2
(AK031520) Mus musculus 13 days embryo male testis cDNA, RIK...    38   0.21   2
(AL834501) Homo sapiens mRNA; cDNA DKFZp761N202 (from clone ...    38   0.21   2
(BD451327) Human Cancer Associated Gene Sequences and Polype...    38   0.21   2
(AK087885) Mus musculus 2 days pregnant adult female ovary c...    38   0.21   2
(CQ493031) Sequence 24898 from Patent WO0160860.                   38   0.21   2
(CR859748) Pongo abelii mRNA; cDNA DKFZp469G0326 (from clone...    38   0.21   2
(DJ441084) Breast Cancer Biomarkers.                               38   0.21   2
(DJ032470) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION.       38   0.21   2
(CS200135) Sequence 16 from Patent WO2005106044.                   38   0.21   2
(AX779832) Sequence 1989 from Patent WO03039443.                   38   0.21   2
(AF046001) Homo sapiens zinc finger transcription factor (ZN...    38   0.21   2
(BD356302) NUCLEIC ACID-BINDING PROTEINS.                          38   0.21   2
(DD388757) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR...    38   0.21   2
(AK146787) Mus musculus 17 days embryo kidney cDNA, RIKEN fu...    38   0.21   2
(AK140139) Mus musculus adult male corpora quadrigemina cDNA...    38   0.21   2
(CQ723524) Sequence 9458 from Patent WO02068579.                   38   0.21   2
(AK226172) Homo sapiens mRNA for zinc finger protein 207 iso...    38   0.21   2
(BC002372) Homo sapiens zinc finger protein 207, mRNA (cDNA ...    38   0.21   2
(AK033497) Mus musculus adult male colon cDNA, RIKEN full-le...    38   0.21   2
(BC107549) Bos taurus zinc finger protein 207, mRNA (cDNA cl...    38   0.21   2
(BC003715) Mus musculus zinc finger protein 207, mRNA (cDNA ...    38   0.21   2
(AK159683) Mus musculus osteoclast-like cell cDNA, RIKEN ful...    38   0.21   2
(BC000962) Homo sapiens cDNA clone IMAGE:3446353, containing...    38   0.22   2
(DJ076798) SECRETED PROTEINS AND POLYNUCLEOTIDES ENCODING THEM.    38   0.22   2
(AR487843) Sequence 35 from patent US 6706869.                     38   0.22   2
(AK081386) Mus musculus 16 days embryo head cDNA, RIKEN full...    38   0.22   2
(CR617272) full-length cDNA clone CS0DI041YL10 of Placenta C...    38   0.22   2
(CQ412572) Sequence 19643 from Patent WO0170979.                   38   0.22   2
(AK309979) Homo sapiens cDNA, FLJ17021.                            38   0.22   2
(BC008023) Homo sapiens zinc finger protein 207, mRNA (cDNA ...    38   0.22   2
(CR857555) Pongo abelii mRNA; cDNA DKFZp469B0839 (from clone...    38   0.22   2
(BC100269) Rattus norvegicus zinc finger protein 207, mRNA (...    38   0.22   2
(CR616570) full-length cDNA clone CS0DF027YG02 of Fetal brai...    38   0.22   2
(CR617452) full-length cDNA clone CS0DG005YF01 of B cells (R...    38   0.22   2
(AK291801) Homo sapiens cDNA FLJ77332 complete cds, highly s...    38   0.22   2
(AB032196) Mus musculus mRNA for zinc finger transcription f...    38   0.22   2
(AK298950) Homo sapiens cDNA FLJ58272 complete cds, highly s...    38   0.22   2
(AB385067) Synthetic construct DNA, clone: pF1KB5227, Homo s...    38   0.22   2
(CU675901) Synthetic construct Homo sapiens gateway clone IM...    38   0.22   2
(DV798070) HW_Loin_10_F03 Bos taurus CF-24-HW loin cDNA libr...    38   0.22   2
(BT007365) Homo sapiens zinc finger protein 207 mRNA, comple...    38   0.22   2
(DC634448) Macaca fascicularis mRNA, clone: QbmA-14157, 5' e...    38   0.22   2

>(AC117176) Dictyostelium discoideum chromosome 2 map 5018074-5200947
              strain AX4, complete sequence.
          Length = 182871

 Score =  827 bits (417), Expect(8) = 0.0
 Identities = 435/444 (97%)
 Strand = Plus / Minus


Query: 744    ttgaccacctttaccatttgaaccatgaccatcattatcgaaatcactgccaccaaatgg 803
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169413 ttgaccacctttaccatttgaaccatgaccatcattatcgaaatcactgccaccaaatgg 169354


Query: 804    tgtatcaccagcaatcagttggtcaaatgttnttggttgtggtaagtcgtctaaatcatc 863
              ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 169353 tgtatcaccagcaatcagttggtcaaatgttcttggttgtggtaagtcgtctaaatcatc 169294


Query: 864    ctcattgaattcaatggtatctacaattacaaaatcatgccaatcaattgaggcaatgat 923
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169293 ctcattgaattcaatggtatctacaattacaaaatcatgccaatcaattgaggcaatgat 169234


Query: 924    tgttttntcctcatcctcacgctcctctttcttttgttcctcaatctctttgagttgatt 983
              |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169233 tgttttctcctcatcctcacgctcctctttcttttgttcctcaatctctttgagttgatt 169174


Query: 984    atattcacaacgattcattgctctctctagaatggtttgtttattgganaaatagtttga 1043
              |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 169173 atattcacaacgattcattgctctctctagaatggtttgtttattggagaaatagtttga 169114


Query: 1044   cnttaattgctcctttanaccntgtggtggatanataatttgagcataggattctaccaa 1103
              | ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 169113 ctttaattgctcctttataccttgtggtggatatataatttgagcataggattctaccaa 169054


Query: 1104   tgctntaaaccattcanacaaatgattggttggttttaaaaaatcaaattgactattctt 1163
              |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169053 tgctctaaaccattcatacaaatgattggttggttttaaaaaatcaaattgactattctt 168994


Query: 1164   tacttctctacttgctaattccat 1187
              ||||||||||||||||||||||||
Sbjct: 168993 tacttctctacttgctaattccat 168970

 Score =  281 bits (142), Expect(8) = 0.0
 Identities = 142/142 (100%)
 Strand = Plus / Minus


Query: 1524   agtagaaggagtttttggatttgcagctgcggcagctgctgctgcatctgcttgaatttt 1583
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168549 agtagaaggagtttttggatttgcagctgcggcagctgctgctgcatctgcttgaatttt 168490


Query: 1584   tgctttattctctacaattttatttctataataaggataatattgatctccttctttcat 1643
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168489 tgctttattctctacaattttatttctataataaggataatattgatctccttctttcat 168430


Query: 1644   aaaattaaattttgcattgtgt 1665
              ||||||||||||||||||||||
Sbjct: 168429 aaaattaaattttgcattgtgt 168408

 Score =  153 bits (77), Expect(8) = 0.0
 Identities = 80/81 (98%)
 Strand = Plus / Minus


Query: 1667   ccttctctttgtttaactttattttcaaaactctcacctaattttgctgcatatgctgct 1726
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168407 ccttctctttgtttaactttattttcaaaactctcacctaattttgctgcatatgctgct 168348


Query: 1727   gttttatcaatgatagttttt 1747
              |||||||||||||||| ||||
Sbjct: 168347 gttttatcaatgatagctttt 168327

 Score =  135 bits (68), Expect(8) = 0.0
 Identities = 68/68 (100%)
 Strand = Plus / Minus


Query: 1243   aattctaatggggtcataaaatcaggtacatctaaaatatataaaagtggatcaggttgt 1302
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168830 aattctaatggggtcataaaatcaggtacatctaaaatatataaaagtggatcaggttgt 168771


Query: 1303   gttggttc 1310
              ||||||||
Sbjct: 168770 gttggttc 168763

 Score = 95.6 bits (48), Expect(8) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Minus


Query: 1743   tttttaattcaccttcagtaggtgtaattatttcattagccattttcc 1790
              ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168233 tttttaattcaccttcagtaggtgtaattatttcattagccattttcc 168186

 Score = 91.7 bits (46), Expect(8) = 0.0
 Identities = 46/46 (100%)
 Strand = Plus / Minus


Query: 1197   atcaccattttttgcaataaattgtgctgttaatctaattgtatct 1242
              ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168960 atcaccattttttgcaataaattgtgctgttaatctaattgtatct 168915

 Score = 30.2 bits (15), Expect(8) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 1803   caactcatctattgg 1817
              |||||||||||||||
Sbjct: 168172 caactcatctattgg 168158

 Score = 26.3 bits (13), Expect(8) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 472    tgataaaagtaat 484
              |||||||||||||
Sbjct: 180585 tgataaaagtaat 180573

 Score =  811 bits (409), Expect(5) = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Plus


Query: 257    ggtttaatgataccaactgcacctccaggattaatgataccaccaacacaacaacaacaa 316
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170218 ggtttaatgataccaactgcacctccaggattaatgataccaccaacacaacaacaacaa 170277


Query: 317    ttacctccccaaacaaatacatccccatcctcatcctcttcaattaaagttgaagaacct 376
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170278 ttacctccccaaacaaatacatccccatcctcatcctcttcaattaaagttgaagaacct 170337


Query: 377    caatctaaaaagttaaagattgatgatgtattaattcctgaatcagtttggttacaaaat 436
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170338 caatctaaaaagttaaagattgatgatgtattaattcctgaatcagtttggttacaaaat 170397


Query: 437    aatccaaaccctgtcaatttaacagtagaaatggctgataaaagtaatatttatcaaatt 496
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170398 aatccaaaccctgtcaatttaacagtagaaatggctgataaaagtaatatttatcaaatt 170457


Query: 497    acacttcaaccaaccgatagtatatctttattaaaagagaaaattaaagaacttaatggt 556
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170458 acacttcaaccaaccgatagtatatctttattaaaagagaaaattaaagaacttaatggt 170517


Query: 557    atgccaactaataaacaaaaattacaagctcctggtttatcaattttaaaagatacttgt 616
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170518 atgccaactaataaacaaaaattacaagctcctggtttatcaattttaaaagatacttgt 170577


Query: 617    agtatagctttttataatttaaaatcattagcaatagttacttgtggtc 665
              |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170578 agtatagctttttataatttaaaatcattagcaatagttacttgtggtc 170626

 Score =  182 bits (92), Expect(5) = 0.0
 Identities = 92/92 (100%)
 Strand = Plus / Plus


Query: 96     ttggtattcaccatcatccacaacgtcatttaccaccaggtatgatgcctcctggaatga 155
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170057 ttggtattcaccatcatccacaacgtcatttaccaccaggtatgatgcctcctggaatga 170116


Query: 156    tgccacctggaatgatgccaccaggtatgatg 187
              ||||||||||||||||||||||||||||||||
Sbjct: 170117 tgccacctggaatgatgccaccaggtatgatg 170148

 Score = 61.9 bits (31), Expect(5) = 0.0
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 1      tgctcaacaaaaagctgctgctattgctgct 31
              |||||||||||||||||||||||||||||||
Sbjct: 169962 tgctcaacaaaaagctgctgctattgctgct 169992

 Score = 28.2 bits (14), Expect(5) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 836    ttggttgtggtaag 849
              ||||||||||||||
Sbjct: 179204 ttggttgtggtaag 179217

 Score = 26.3 bits (13), Expect(5) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 1139   ttaaaaaatcaaa 1151
              |||||||||||||
Sbjct: 182253 ttaaaaaatcaaa 182265

 Score = 46.1 bits (23), Expect(2) = 0.001
 Identities = 26/27 (96%)
 Strand = Plus / Plus


Query: 128    ccaccaggtatgatgcctcctggaatg 154
              ||||||||||||||||| |||||||||
Sbjct: 170134 ccaccaggtatgatgccacctggaatg 170160

 Score = 30.2 bits (15), Expect(2) = 0.001
 Identities = 24/27 (88%)
 Strand = Plus / Plus


Query: 152    atgatgccacctggaatgatgccacca 178
              ||||| |||||||||||| | ||||||
Sbjct: 170182 atgattccacctggaatggtaccacca 170208

 Score = 58.0 bits (29), Expect = 0.001
 Identities = 38/41 (92%)
 Strand = Plus / Plus


Query: 137    atgatgcctcctggaatgatgccacctggaatgatgccacc 177
              |||||||| ||||||||||||||||| || |||||||||||
Sbjct: 170113 atgatgccacctggaatgatgccaccaggtatgatgccacc 170153

 Score = 48.1 bits (24), Expect = 1.2
 Identities = 33/36 (91%)
 Strand = Plus / Plus


Query: 152    atgatgccacctggaatgatgccaccaggtatgatg 187
              |||||||| ||||||||||||||||| || ||||||
Sbjct: 170098 atgatgcctcctggaatgatgccacctggaatgatg 170133

 Score = 46.1 bits (23), Expect = 4.7
 Identities = 44/51 (86%)
 Strand = Plus / Plus


Query: 128    ccaccaggtatgatgcctcctggaatgatgccacctggaatgatgccacca 178
              ||||| || |||||||| || || |||||||||||||||||| | ||||||
Sbjct: 170119 ccacctggaatgatgccaccaggtatgatgccacctggaatggtaccacca 170169

 Score = 38.2 bits (19), Expect(10) = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 298    accaacacaacaacaacaa 316
              |||||||||||||||||||
Sbjct: 158093 accaacacaacaacaacaa 158075

 Score = 32.2 bits (16), Expect(10) = 9.6
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 1590  attctctacaatttta 1605
             ||||||||||||||||
Sbjct: 57975 attctctacaatttta 57960

 Score = 30.2 bits (15), Expect(10) = 9.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 1767  taattatttcattag 1781
             |||||||||||||||
Sbjct: 14668 taattatttcattag 14654

 Score = 28.2 bits (14), Expect(10) = 9.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 1238  tatctaattctaat 1251
             ||||||||||||||
Sbjct: 70270 tatctaattctaat 70257

 Score = 28.2 bits (14), Expect(10) = 9.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 598   aattttaaaagata 611
             ||||||||||||||
Sbjct: 94255 aattttaaaagata 94242

 Score = 28.2 bits (14), Expect(10) = 9.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 389    ttaaagattgatga 402
              ||||||||||||||
Sbjct: 122008 ttaaagattgatga 121995

 Score = 26.3 bits (13), Expect(10) = 9.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 1644  aaaattaaatttt 1656
             |||||||||||||
Sbjct: 53497 aaaattaaatttt 53485

 Score = 26.3 bits (13), Expect(10) = 9.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 1272  atctaaaatatat 1284
             |||||||||||||
Sbjct: 62946 atctaaaatatat 62934

 Score = 26.3 bits (13), Expect(10) = 9.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 853   tctaaatcatcct 865
             |||||||||||||
Sbjct: 92348 tctaaatcatcct 92336

 Score = 26.3 bits (13), Expect(10) = 9.6
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 526   attaaaagagaaa 538
             |||||||||||||
Sbjct: 97941 attaaaagagaaa 97929

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,715,603,377
Number of extensions: 113784979
Number of successful extensions: 10967050
Number of sequences better than 10.0: 615
Length of query: 1817
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1793
Effective length of database: 97,308,875,965
Effective search space: 174474814605245
Effective search space used: 174474814605245
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Contig-U12014-1Q.Seq.d
         (1817 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86A14) RecName: Full=Probable splicing factor 3 subunit 1;  &A...   341   5e-92
CP001334_189(CP001334|pid:none) Micromonas sp. RCC299 chromosome...   127   1e-27
AC141922_7(AC141922|pid:none) Medicago truncatula clone mth2-9n1...   121   7e-26
(Q8RXF1) RecName: Full=Probable splicing factor 3 subunit 1;  &A...   119   3e-25
AC010657_13(AC010657|pid:none) Genomic sequence for Arabidopsis ...   119   3e-25
AK318760_1(AK318760|pid:none) Arabidopsis thaliana AT1G14650 mRN...   119   3e-25
BT067293_1(BT067293|pid:none) Zea mays full-length cDNA clone ZM...   115   7e-24
AP004117_5(AP004117|pid:none) Oryza sativa Japonica Group genomi...   113   3e-23
AK029095_1(AK029095|pid:none) Mus musculus 10 days neonate skin ...   103   2e-20
AK030223_1(AK030223|pid:none) Mus musculus adult male testis cDN...   103   2e-20
AK028829_1(AK028829|pid:none) Mus musculus 10 days neonate skin ...   103   2e-20
(A2VDN6) RecName: Full=Splicing factor 3 subunit 1;  &BC133328_1...   103   2e-20
AL591213_2(AL591213|pid:none) Zebrafish DNA sequence from clone ...   102   4e-20
BT045132_1(BT045132|pid:none) Salmo salar clone ssal-rgf-513-021...   102   6e-20
BC073232_1(BC073232|pid:none) Xenopus laevis MGC80562 protein, m...    99   4e-19
AJ292373_1(AJ292373|pid:none) Echinococcus multilocularis mRNA f...    99   7e-19
CP000581_297(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    99   7e-19
FN376189_2(FN376189|pid:none) Schistosoma mansoni genome sequenc...    98   9e-19
CR954201_270(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    97   1e-18
AE014297_2366(AE014297|pid:none) Drosophila melanogaster chromos...    97   1e-18
AE017341_106(AE017341|pid:none) Cryptococcus neoformans var. neo...    96   3e-18
AM920435_766(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    92   6e-17
AF106576_5(AF106576|pid:none) Caenorhabditis elegans cosmid W07E...    91   2e-16
CR940348_571(CR940348|pid:none) Theileria annulata strain Ankara...    89   4e-16
AP007167_90(AP007167|pid:none) Aspergillus oryzae RIB40 genomic ...    86   6e-15
(O13900) RecName: Full=Pre-mRNA-splicing factor sap114;  &CU3296...    80   2e-13
AM910994_685(AM910994|pid:none) Plasmodium knowlesi strain H chr...    77   2e-12
CR942716_1(CR942716|pid:none) Xenopus tropicalis finished cDNA, ...    77   2e-12
AE014187_711(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    75   6e-12
BC161288_1(BC161288|pid:none) Xenopus tropicalis hypothetical pr...    75   1e-11
AL929263_7(AL929263|pid:none) Zebrafish DNA sequence from clone ...    74   2e-11
AK051703_1(AK051703|pid:none) Mus musculus 12 days embryo spinal...    72   9e-11
EF214871_1(EF214871|pid:none) Callithrix jacchus clone D13-54.2_...    69   6e-10
CR382134_127(CR382134|pid:none) Debaryomyces hansenii strain CBS...    63   4e-08
FN392322_90(FN392322|pid:none) Pichia pastoris GS115 chromosome ...    60   3e-07
AL161543_20(AL161543|pid:none) Arabidopsis thaliana DNA chromoso...    56   5e-06
AL161542_3(AL161542|pid:none) Arabidopsis thaliana DNA chromosom...    50   4e-04
DQ446921_1(DQ446921|pid:none) Arabidopsis thaliana clone pENTR22...    50   4e-04
CU928179_580(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    45   0.009
FN357412_14(FN357412|pid:none) Schistosoma mansoni genome sequen...    40   0.37
DQ185005_1(DQ185005|pid:none) Drosophila simulans suppressor of ...    39   0.41
BC042301_1(BC042301|pid:none) Xenopus laevis similar to splicing...    39   0.48
BC070844_1(BC070844|pid:none) Xenopus laevis similar to splicing...    39   0.48
DQ185003_1(DQ185003|pid:none) Drosophila erecta suppressor of wh...    39   0.82
AL109630_17(AL109630|pid:none) Drosophila melanogaster BAC clone...    39   0.82
FM992689_971(FM992689|pid:none) Candida dubliniensis CD36 chromo...    39   0.82
(P12297) RecName: Full=Protein suppressor of white apricot;  &AE...    39   0.82
DQ185004_1(DQ185004|pid:none) Drosophila orena suppressor of whi...    39   0.82
DQ185007_1(DQ185007|pid:none) Drosophila yakuba suppressor of wh...    36   0.87
AK031872_1(AK031872|pid:none) Mus musculus adult male medulla ob...    37   1.8
AK140369_1(AK140369|pid:none) Mus musculus 4 days neonate male a...    37   1.8
CR382132_767(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    37   1.8
BC105868_1(BC105868|pid:none) Rattus norvegicus splicing factor,...    37   1.8
AF539999_151(AF539999|pid:none) Mamestra configurata nucleopolyh...    37   3.1
BC136678_1(BC136678|pid:none) Homo sapiens splicing factor, argi...    36   4.1
(Q12872) RecName: Full=Splicing factor, arginine/serine-rich 8; ...    36   4.1
AL132967_3(AL132967|pid:none) Arabidopsis thaliana DNA chromosom...    36   4.1
EU961051_1(EU961051|pid:none) Zea mays clone 230717 40S ribosoma...    36   4.1
BC024041_1(BC024041|pid:none) Homo sapiens splicing factor, argi...    36   4.1
AB208921_1(AB208921|pid:none) Homo sapiens mRNA for SFRS8 protei...    36   4.1
EF624773_1(EF624773|pid:none) HIV-1 isolate 05033eo clone eo12 f...    36   5.3
(Q54TK0) RecName: Full=NEDD8-like protein 1;                           35   7.0
BT047428_1(BT047428|pid:none) Salmo salar clone ssal-evd-523-216...    35   7.0
AF034789_1(AF034789|pid:none) Amoeba proteus polyubiquitin mRNA,...    35   9.1
DQ813662_27(DQ813662|pid:none) Anticarsia gemmatalis nucleopolyh...    35   9.1
AJ000655_1(AJ000655|pid:none) Phreatamoeba balamuthi UBI1 sequen...    35   9.1

>(Q86A14) RecName: Full=Probable splicing factor 3 subunit 1;
            &AC117176_69(AC117176|pid:none)
          Length = 760

 Score =  341 bits (875), Expect = 5e-92
 Identities = 188/304 (61%), Positives = 191/304 (62%)
 Frame = -1

Query: 1685 KLNKEKXHNAKFNFMKEGDQYYPYYRNKIVENKAKIQADXXXXXXXXXXXXXXXXXXXXX 1506
            K+ + + HNAKFNFMKEGDQYYPYYRNKIVENKAKIQAD
Sbjct: 34   KVKQREGHNAKFNFMKEGDQYYPYYRNKIVENKAKIQADAAAAAAAANPKTPSTTTTTTT 93

Query: 1505 XXXXXXXXXXXXXXXXXXXXXXXXTIVPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1326
                                    TIVPVP
Sbjct: 94   TTTATTPLPTATATTTSPTPTTSSTIVPVPQTNSTQQLQQQQQQQQQTTPVFEKPQPPPP 153

Query: 1325 XXXXXXXXXXXPLLYILDVPDFMTPLELDTIRLTAQFIAKNGDXFFMELASREVKNSQFD 1146
                       PLLYILDVPDFMTPLELDTIRLTAQFIAKNGD FFMELASREVKNSQFD
Sbjct: 154  PPPKKEPTQPDPLLYILDVPDFMTPLELDTIRLTAQFIAKNGDSFFMELASREVKNSQFD 213

Query: 1145 FLKPTNHLXEWFXALVESYAQIXYPPXGXKEQLXSNYXSNKQTILERAMNRCEYNQLXXX 966
            FLKPTNHL EWF ALVESYAQI YPP G KEQL SNY SNKQTILERAMNRCEYNQL
Sbjct: 214  FLKPTNHLYEWFRALVESYAQIIYPPQGIKEQLKSNYFSNKQTILERAMNRCEYNQLKEI 273

Query: 965  XXXXXXXXXXXXKTIIASIDWHDFVIVDTIEFNEDDLDDLPQPXTFDQLIAGDTPFGGSD 786
                        KTIIASIDWHDFVIVDTIEFNEDDLDDLPQP TFDQLIAGDTPFGGSD
Sbjct: 274  EEQKKEEREDEEKTIIASIDWHDFVIVDTIEFNEDDLDDLPQPRTFDQLIAGDTPFGGSD 333

Query: 785  FDND 774
            FDND
Sbjct: 334  FDND 337

 Score =  214 bits (544), Expect = 1e-53
 Identities = 119/195 (61%), Positives = 121/195 (62%)
 Frame = +2

Query: 92   PIGIHHHPQRHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 271
            PIGIHHHPQRHL
Sbjct: 561  PIGIHHHPQRHLPPGMMPPGMMPPGMMPPGMMPPGMVPPPPFGMIPPGMVPPPPPGLMIP 620

Query: 272  XXXXXLMIXXXXXXXXXXXXXXXXXXXXXIKVEEPQSKKLKIDDVLIPESVWLQNNPNPV 451
                 LMI                     IKVEEPQSKKLKIDDVLIPESVWLQNNPNPV
Sbjct: 621  TAPPGLMIPPTQQQQLPPQTNTSPSSSSSIKVEEPQSKKLKIDDVLIPESVWLQNNPNPV 680

Query: 452  NLTVEMADKSNIYQITLQPTDSISLLKEKIKELNGMPTNKQKLQAPGLSILKDTCSIAFY 631
            NLTVEMADKSNIYQITLQPTDSISLLKEKIKELNGMPTNKQKLQAPGLSILKDTCSIAFY
Sbjct: 681  NLTVEMADKSNIYQITLQPTDSISLLKEKIKELNGMPTNKQKLQAPGLSILKDTCSIAFY 740

Query: 632  NLKSLAIVTCGQKER 676
            NLKSLAIVTCGQK++
Sbjct: 741  NLKSLAIVTCGQKKK 755

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 42/47 (89%), Positives = 42/47 (89%)
 Frame = -3

Query: 1785 MANEIITPTEGELKTIIDKTAAYAAKLGESFENKVKQREGTQCKI*F 1645
            MANEIITPTEGELKTIIDKTAAYAAKLGESFENKVKQREG   K  F
Sbjct: 1    MANEIITPTEGELKTIIDKTAAYAAKLGESFENKVKQREGHNAKFNF 47

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,643,621,431
Number of extensions: 23982522
Number of successful extensions: 62426
Number of sequences better than 10.0: 66
Number of HSP's gapped: 62235
Number of HSP's successfully gapped: 157
Length of query: 605
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 470
Effective length of database: 614,245,399
Effective search space: 288695337530
Effective search space used: 288695337530
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.57  gvh: 0.29  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12014-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 4
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 3
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0