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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11979-1
Contig ID Contig-U11979-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Contig-U11979-1Q.Seq.d
AGCGTTTATTTAAATATATTTATTTAAATTCATTTATTTATTTATTTTTT
TTTTAAAAAAAAAGTTAATTTTTATTTTTTATTTTTTTTTTCTTTAATTA
AATTTCATTCATTTNTTTTTTTTNCATTACTGCCAAAAAAAAGGANGAAN
TAANTAAAANTTAAGAAANTANTANTNGCANTNGAANTTTAATNTAAANG
NGTAAAATANTANTNTNTNTAAATTNTAAAAANGTC----------ATTC
CAGAATATTCAGAACTTAGTTCTATTGAAGGTCTTGTTGAAGGCGCTACC
TTGGAAATGGTACCAGTCGATTACAATGAGAGATCAGCAAAATTACACGT
TAAAAGATTAAGAGATATTATGAATACAGGTTTAACAGAATTTGCCAATA
TGAATAATCCAAGTCTTTTCACAAGTTTTTCATTCCCAGAGAAATCAAAT
ATTTTAACTGAAGAACAACAATTAGAAGAACAAAAACAAAAATTTGAACA
ACAACAACAACAACAACAACAAACTGAAGATAAAGAGGAAAAAGAAACTA
TAGCAACTGAACAACAACAAAATAAAAAGAATAAACATCATAATAAAAAA
GGTAATAAAAAGAATAATGGTGATGAATCATTGAATAATGAAAATAATGA
AGAGAAGTTAACACCACAACAAAAAGAGAGAAAACAAAAGATGACAGAGA
TTAAAGGTATTGATAAACCAATGTTAAGTAGTTATTATCCAGAGAGTCCA
ATTGCACCAGTTCAATGTGTTAAATCAATGATTTACAGTGGTTGGTCACC
AGTACCAGGATATAGAAAATTGTTTGGTGATTTATTCTATTTGGATATCA
CATTATTAGAGGGTACAACCATTTGTGTTACAGCATCAACTCAAGGTTTT
TTCATTAATCAATCAAGCAATGCAACATTCAATCCATCAGTTTCACCAAA
GGCAACCATCAATCATAGTTTACATCAATTATTGACCCAAGTTTCAAGAT
TATTCCGTCGTGGTTTAAATCAAATCCTTACAAACATTGGTCGTAATCAT
CCATTCGATATGCTTCCAGGCGTATTACCAGTACACAATTGGGTTGCCTC
ATCAAAGACCAATCGTTACGATATCAATAAAGGTACCGATACTTTTGTTA
GCGTACAAGACGTTGAGTTGCGTGGCAATCCTCGTGATTGGAACGAAGAG
ATCCAAGCACCAAAGGAGTTACCAAAATCAACCGTTCAAGAACGTATCAT
TAGAGATCGTGCTATCAGTAAGGTAAATTCTGAATTTGTTGAATGCGCAA
TTCGTGGTGCTCAAGTCATTGTCGATAAAGCAATTCTTCCAATTAATCCA
GCTGAAAATCAAAGAAGTCATATGTTCCTCTACAATAATATCTTCTTTTC
CTATGCATTGGACACTCGTGATTCTTTCACCGATTGTGGTGGTGATGATG
CTGCTCGTACATCTGCAAACAATGATCTCAAAGGTATTCGTTTATATAAT
TTAGCCGATATTGATGGTCTTTACACTTTAGGTACTGCCATCGTAGATTA
TAAAGGCCAAAGAATCATTGCTCAATCTTTAATTCCTGGTATTTTAACAA
CNAAAAAACTTCAAAAATTTATTAGGTTCAAGGATACACCAACAAATAAG
AAGAA
Gap gap included
Contig length 1645
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2226275
End point 2224624
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U11979
List of clone(s) 

est1=SFD824F,1,237
est2=VHP679F,238,808
est3=VHC359F,485,1073
est4=SFD824Z,867,1647
est5=VHG150F,880,1474
Translated Amino Acid sequence 
rlfkyiylnsfiylfff*kks*flffiffffn*isfixffxitakkkxexxkx*exxxxx
xxlx*XXKIXXXXNXKXV---

---IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSL
FTSFSFPEKSNILTEEQQLEEQKQKFEQQQQQQQQTEDKEEKETIATEQQQNKKNKHHNK
KGNKKNNGDESLNNENNEEKLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKS
MIYSGWSPVPGYRKLFGDLFYLDITLLEGTTICVTASTQGFFINQSSNATFNPSVSPKAT
INHSLHQLLTQVSRLFRRGLNQILTNIGRNHPFDMLPGVLPVHNWVASSKTNRYDINKGT
DTFVSVQDVELRGNPRDWNEEIQAPKELPKSTVQERIIRDRAISKVNSEFVECAIRGAQV
IVDKAILPINPAENQRSHMFLYNNIFFSYALDTRDSFTDCGGDDAARTSANNDLKGIRLY
NLADIDGLYTLGTAIVDYKGQRIIAQSLIPGILTTKKLQKFIRFKDTPTNKK
Translated Amino Acid sequence (All Frames) 
Frame A:
svylnifi*ihlfiyfffkkkvnfyflfffslikfhsfxffxllpkkrxx*xkxkkxxxa
xex*xkxvkxxxx*ixkx---

---IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSL
FTSFSFPEKSNILTEEQQLEEQKQKFEQQQQQQQQTEDKEEKETIATEQQQNKKNKHHNK
KGNKKNNGDESLNNENNEEKLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKS
MIYSGWSPVPGYRKLFGDLFYLDITLLEGTTICVTASTQGFFINQSSNATFNPSVSPKAT
INHSLHQLLTQVSRLFRRGLNQILTNIGRNHPFDMLPGVLPVHNWVASSKTNRYDINKGT
DTFVSVQDVELRGNPRDWNEEIQAPKELPKSTVQERIIRDRAISKVNSEFVECAIRGAQV
IVDKAILPINPAENQRSHMFLYNNIFFSYALDTRDSFTDCGGDDAARTSANNDLKGIRLY
NLADIDGLYTLGTAIVDYKGQRIIAQSLIPGILTTKKLQKFIRFKDTPTNKK

Frame B:
afi*iylfkfiylfifflkkklififyfffl*lnfihxffxhycqkkgxxx*xlrxxxxx
xxfnxxx*nxxxxkx*kx---

---fqniqnlvllkvllkalpwkwyqsitmrdqqnytlkd*eil*iqv*qnlpi*iiqvf
sqvfhsqrnqif*lknnn*knknknlnnnnnnnnklkikrkkkl*qlnnnkikriniiik
kvikrimvmnh*imkimkrs*hhnkkrenkr*qrlkvlinqc*vviiqrvqlhqfnvlnq
*ftvvghqyqdienclviysiwishy*rvqpfvlqhqlkvfslinqamqhsihqfhqrqp
siivyiny*pkfqdysvvv*ikslqtlvviihsicfqayyqytiglphqrpivtisikvp
illlayktlscvailvigtkrskhqrsyqnqpfknvsleivlsvr*ilnllnaqfvvlks
lsikqffqliqlkikevicsstiissfpmhwtlvilspivvvmmllvhlqtmiskvfvyi
i*pilmvftl*vlps*iikakesllnl*flvf*qxknfknllgsrihqqirr

Frame C:
rlfkyiylnsfiylfff*kks*flffiffffn*isfixffxitakkkxexxkx*exxxxx
xxlx*XXKIXXXXNXKXV---

---srifrt*fy*rsc*rrylgngtsrlq*eiskitr*kikryyeyrfnricqye*sksf
hkffipreikyfn*rttirrtktki*ttttttttn*r*rgkrnysn*tttk*ke*ts**k
r**ke*w**iie**k**revntttkrektkddrd*ry**tnvk*llsresnctssmc*in
dlqwlvtstri*kivw*filfgyhiirgynhlcysinsrffh*sikqcniqsisftkgnh
qs*ftsiidpsfkiipswfksnpykhws*ssiryasrritstqlgclikdqslryq*ryr
yfc*rtrr*vawqss*lerrdpstkgvtkinrsrtyh*rscyq*gkf*ic*mrnswcssh
cr*snssn*ss*kskksyvplq*yllflcighs*ffhrlww**ccsyickq*sqrysfi*
fsry*wslhfrychrrl*rpknhcsifnswyfnnxktskiy*vqgytnk*ee
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11979-1 (Contig-U11979-1Q)
/CSM_Contig/Contig-U11979-1Q.Seq.d
         (1655 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Conti...  1953  0.0
Contig-U10970-1 (Contig-U10970-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U09473-1 (Contig-U09473-1Q) /CSM_Contig/Conti...    38  0.030
Contig-U14465-1 (Contig-U14465-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U11325-1 (Contig-U11325-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U11005-1 (Contig-U11005-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U09406-1 (Contig-U09406-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U06822-1 (Contig-U06822-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U06267-1 (Contig-U06267-1Q) /CSM_Contig/Conti...    36  0.12
Contig-U05582-1 (Contig-U05582-1Q) /CSM_Contig/Conti...    36  0.12

>Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Contig-U11979-1Q.Seq.d
          Length = 1655

 Score = 1953 bits (985), Expect = 0.0
 Identities = 1000/1006 (99%)
 Strand = Plus / Plus

                                                                        
Query: 650  aagagaagttaacaccacaacaaaaagagagaaaacaaaagatgacagagattaaaggta 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  aagagaagttaacaccacaacaaaaagagagaaaacaaaagatgacagagattaaaggta 709

                                                                        
Query: 710  ttgataaaccaatgttaagtagttattatccagagagtccaattgcaccagttcaatgtg 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ttgataaaccaatgttaagtagttattatccagagagtccaattgcaccagttcaatgtg 769

                                                                        
Query: 770  ttaaatcaatgatttacagtggttggtcaccagtaccaggatatagaaaattgtttggtg 829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  ttaaatcaatgatttacagtggttggtcaccagtaccaggatatagaaaattgtttggtg 829

                                                                        
Query: 830  atttattctatttggatatcacattattagagggtacaaccatttgtgttacagcatcaa 889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  atttattctatttggatatcacattattagagggtacaaccatttgtgttacagcatcaa 889

                                                                        
Query: 890  ctcaaggttttttcattaatcaatcaagcaatgcaacattcaatccatcagtttcaccaa 949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  ctcaaggttttttcattaatcaatcaagcaatgcaacattcaatccatcagtttcaccaa 949

                                                                        
Query: 950  aggcaaccatcaatcatagtttacatcaattattgacccaagtttcaagattattccgtc 1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  aggcaaccatcaatcatagtttacatcaattattgacccaagtttcaagattattccgtc 1009

                                                                        
Query: 1010 gtggtttaaatcaaatccttacaaacattggtcgtaatcatccattcgatatgcttccag 1069
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gtggtttaaatcaaatccttacaaacattggtcgtaatcatccattcgatatgcttccag 1069

                                                                        
Query: 1070 gcgtattaccagtacacaattgggttgcctcatcaaagaccaatcgttacgatatcaata 1129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 gcgtattaccagtacacaattgggttgcctcatcaaagaccaatcgttacgatatcaata 1129

                                                                        
Query: 1130 aaggtaccgatacttttgttagcgtacaagacgttgagttgcgtggcaatcctcgtgatt 1189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 aaggtaccgatacttttgttagcgtacaagacgttgagttgcgtggcaatcctcgtgatt 1189

                                                                        
Query: 1190 ggaacgaagagatccaagcaccaaaggagttaccaaaatcaaccgttcaagaacgtatca 1249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 ggaacgaagagatccaagcaccaaaggagttaccaaaatcaaccgttcaagaacgtatca 1249

                                                                        
Query: 1250 ttagagatcgtgctatcagtaaggtaaattctgaatttgttgaatgcgcaattcgtggtg 1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 ttagagatcgtgctatcagtaaggtaaattctgaatttgttgaatgcgcaattcgtggtg 1309

                                                                        
Query: 1310 ctcaagtcattgtcgataaagcaattcttccaattaatccagctgaaaatcaaagaagtc 1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 ctcaagtcattgtcgataaagcaattcttccaattaatccagctgaaaatcaaagaagtc 1369

                                                                        
Query: 1370 atatgttcctctacaataatatcttcttttcctatgcattggacactcgtgattctttca 1429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 atatgttcctctacaataatatcttcttttcctatgcattggacactcgtgattctttca 1429

                                                                        
Query: 1430 ccgattgtggtggtgatgatgctgctcgtacatctgcaaacaatgatctcaaaggtattc 1489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 ccgattgtggtggtgatgatgctgctcgtacatctgcaaacaatgatctcaaaggtattc 1489

                                                                        
Query: 1490 gtttatataatttagccgatattgatggtctttacactttaggtactgccatcgtagatt 1549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 gtttatataatttagccgatattgatggtctttacactttaggtactgccatcgtagatt 1549

                                                                        
Query: 1550 ataaaggccaaagaatcattgctcaatctttaattcctggtattttaacaacnnnnnnnc 1609
            |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 1550 ataaaggccaaagaatcattgctcaatctttaattcctggtattttaacaacnaaaaaac 1609

                                                          
Query: 1610 ttcaaaaatttattaggttcaaggatacaccaacaaataagaagaa 1655
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 ttcaaaaatttattaggttcaaggatacaccaacaaataagaagaa 1655


 Score =  448 bits (226), Expect = e-126
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 143 ggangaantaantaaaanttaagaaantantantngcantngaantttaatntaaangng 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ggangaantaantaaaanttaagaaantantantngcantngaantttaatntaaangng 202

                                                                       
Query: 203 taaaatantantntntntaaattntaaaaangtcnnnnnnnnnnattccagaatattcag 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taaaatantantntntntaaattntaaaaangtcnnnnnnnnnnattccagaatattcag 262

                                                                       
Query: 263 aacttagttctattgaaggtcttgttgaaggcgctaccttggaaatggtaccagtcgatt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aacttagttctattgaaggtcttgttgaaggcgctaccttggaaatggtaccagtcgatt 322

                                                                       
Query: 323 acaatgagagatcagcaaaattacacgttaaaagattaagagatattatgaatacaggtt 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaatgagagatcagcaaaattacacgttaaaagattaagagatattatgaatacaggtt 382

                                                                       
Query: 383 taacagaatttgccaatatgaataatccaagtcttttcacaagtttttcattcccagaga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taacagaatttgccaatatgaataatccaagtcttttcacaagtttttcattcccagaga 442

                              
Query: 443 aatcaaatattttaactga 461
           |||||||||||||||||||
Sbjct: 443 aatcaaatattttaactga 461


 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 523 actgaagataaagaggaaaaagaaactatagcaactgaacaacaac 568
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 actgaagataaagaggaaaaagaaactatagcaactgaacaacaac 568


 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  agcgtttatttaaatatatttatttaaattca 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  agcgtttatttaaatatatttatttaaattca 32


>Contig-U10970-1 (Contig-U10970-1Q) /CSM_Contig/Contig-U10970-1Q.Seq.d
          Length = 1623

 Score = 38.2 bits (19), Expect = 0.030
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 9  tttaaatatatttatttaa 27
          |||||||||||||||||||
Sbjct: 50 tttaaatatatttatttaa 68


>Contig-U09473-1 (Contig-U09473-1Q) /CSM_Contig/Contig-U09473-1Q.Seq.d
          Length = 1087

 Score = 38.2 bits (19), Expect = 0.030
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 5  tttatttaaatatatttatttaa 27
          |||||||| ||||||||||||||
Sbjct: 54 tttatttatatatatttatttaa 32


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                              
Query: 8  atttaaatatatttatttaa 27
          ||||| ||||||||||||||
Sbjct: 32 atttatatatatttatttaa 13


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,242
Number of Sequences: 6905
Number of extensions: 15242
Number of successful extensions: 1639
Number of sequences better than 10.0: 200
length of query: 1655
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1639
effective length of database: 5,564,391
effective search space: 9120036849
effective search space used: 9120036849
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.28
Homology vs DNA 
Query= Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Contig-U11979-1Q.Seq.d
         (1655 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U49332) Dictyostelium discoideum 150-kD protein (cluA) mRNA...  1871   0.0    3
(BJ399966) Dictyostelium discoideum cDNA clone:dds8p06, 3' e...  1532   0.0    1
(BJ421686) Dictyostelium discoideum cDNA clone:ddv43c13, 5' ...  1179   0.0    1
(BJ419265) Dictyostelium discoideum cDNA clone:ddv35f15, 5' ...   842   0.0    1
(BJ427590) Dictyostelium discoideum cDNA clone:ddv62m20, 5' ...   414   0.0    2
(CT797314) Pan troglodytes chromosome X clone CH251-171B18 m...    42   0.64   3
(EI252157) ZMMBBc0294F04.fv ZMMBB_VAL Zea mays genomic clone...    48   1.1    1
(EX286153) 1573995_5_O09_033 PY06 Carica papaya cDNA, mRNA s...    48   1.1    1
(EX279232) 1566108_5_F18_075 PY06 Carica papaya cDNA, mRNA s...    48   1.1    1
(EX264973) 1445431_5_F13_059 PY06 Carica papaya cDNA, mRNA s...    48   1.1    1
(EX254830) PY05078X1H12.f1 PY05 Carica papaya cDNA, mRNA seq...    48   1.1    1
(AC116475) Mus musculus chromosome 8, clone RP23-386N2, comp...    46   4.2    1
(CX108412) BI148P14 A normalized whole-life-cycle cDNA libra...    46   4.2    1
(CT850617) Oryza sativa Indica Group EST sequence:OSIGCRN110...    46   4.2    1
(BG622657) 602647413F1 NIH_MGC_79 Homo sapiens cDNA clone IM...    46   4.2    1
(AC099195) Rattus norvegicus clone CH230-187H23, *** SEQUENC...    32   7.6    2
(AC216432) Oryza punctata clone OP__Ba0058M17, *** SEQUENCIN...    40   8.9    3

>(U49332) Dictyostelium discoideum 150-kD protein (cluA) mRNA,
            complete cds.
          Length = 4232

 Score = 1871 bits (944), Expect(3) = 0.0
 Identities = 944/944 (100%)
 Strand = Plus / Plus


Query: 658  ttaacaccacaacaaaaagagagaaaacaaaagatgacagagattaaaggtattgataaa 717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  ttaacaccacaacaaaaagagagaaaacaaaagatgacagagattaaaggtattgataaa 973


Query: 718  ccaatgttaagtagttattatccagagagtccaattgcaccagttcaatgtgttaaatca 777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  ccaatgttaagtagttattatccagagagtccaattgcaccagttcaatgtgttaaatca 1033


Query: 778  atgatttacagtggttggtcaccagtaccaggatatagaaaattgtttggtgatttattc 837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 atgatttacagtggttggtcaccagtaccaggatatagaaaattgtttggtgatttattc 1093


Query: 838  tatttggatatcacattattagagggtacaaccatttgtgttacagcatcaactcaaggt 897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tatttggatatcacattattagagggtacaaccatttgtgttacagcatcaactcaaggt 1153


Query: 898  tttttcattaatcaatcaagcaatgcaacattcaatccatcagtttcaccaaaggcaacc 957
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 tttttcattaatcaatcaagcaatgcaacattcaatccatcagtttcaccaaaggcaacc 1213


Query: 958  atcaatcatagtttacatcaattattgacccaagtttcaagattattccgtcgtggttta 1017
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 atcaatcatagtttacatcaattattgacccaagtttcaagattattccgtcgtggttta 1273


Query: 1018 aatcaaatccttacaaacattggtcgtaatcatccattcgatatgcttccaggcgtatta 1077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 aatcaaatccttacaaacattggtcgtaatcatccattcgatatgcttccaggcgtatta 1333


Query: 1078 ccagtacacaattgggttgcctcatcaaagaccaatcgttacgatatcaataaaggtacc 1137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ccagtacacaattgggttgcctcatcaaagaccaatcgttacgatatcaataaaggtacc 1393


Query: 1138 gatacttttgttagcgtacaagacgttgagttgcgtggcaatcctcgtgattggaacgaa 1197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 gatacttttgttagcgtacaagacgttgagttgcgtggcaatcctcgtgattggaacgaa 1453


Query: 1198 gagatccaagcaccaaaggagttaccaaaatcaaccgttcaagaacgtatcattagagat 1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 gagatccaagcaccaaaggagttaccaaaatcaaccgttcaagaacgtatcattagagat 1513


Query: 1258 cgtgctatcagtaaggtaaattctgaatttgttgaatgcgcaattcgtggtgctcaagtc 1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 cgtgctatcagtaaggtaaattctgaatttgttgaatgcgcaattcgtggtgctcaagtc 1573


Query: 1318 attgtcgataaagcaattcttccaattaatccagctgaaaatcaaagaagtcatatgttc 1377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 attgtcgataaagcaattcttccaattaatccagctgaaaatcaaagaagtcatatgttc 1633


Query: 1378 ctctacaataatatcttcttttcctatgcattggacactcgtgattctttcaccgattgt 1437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 ctctacaataatatcttcttttcctatgcattggacactcgtgattctttcaccgattgt 1693


Query: 1438 ggtggtgatgatgctgctcgtacatctgcaaacaatgatctcaaaggtattcgtttatat 1497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 ggtggtgatgatgctgctcgtacatctgcaaacaatgatctcaaaggtattcgtttatat 1753


Query: 1498 aatttagccgatattgatggtctttacactttaggtactgccatcgtagattataaaggc 1557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 aatttagccgatattgatggtctttacactttaggtactgccatcgtagattataaaggc 1813


Query: 1558 caaagaatcattgctcaatctttaattcctggtattttaacaac 1601
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 caaagaatcattgctcaatctttaattcctggtattttaacaac 1857

 Score = 44.1 bits (22), Expect(3) = 0.0
 Identities = 22/22 (100%)
 Strand = Plus / Plus


Query: 1603 aaaaaacttcaaaaatttatta 1624
            ||||||||||||||||||||||
Sbjct: 1860 aaaaaacttcaaaaatttatta 1881

 Score = 32.2 bits (16), Expect(3) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 1632 ggatacaccaacaaat 1647
            ||||||||||||||||
Sbjct: 1891 ggatacaccaacaaat 1906

 Score =  359 bits (181), Expect = 2e-94
 Identities = 181/181 (100%)
 Strand = Plus / Plus


Query: 263 aacttagttctattgaaggtcttgttgaaggcgctaccttggaaatggtaccagtcgatt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aacttagttctattgaaggtcttgttgaaggcgctaccttggaaatggtaccagtcgatt 581


Query: 323 acaatgagagatcagcaaaattacacgttaaaagattaagagatattatgaatacaggtt 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acaatgagagatcagcaaaattacacgttaaaagattaagagatattatgaatacaggtt 641


Query: 383 taacagaatttgccaatatgaataatccaagtcttttcacaagtttttcattcccagaga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taacagaatttgccaatatgaataatccaagtcttttcacaagtttttcattcccagaga 701


Query: 443 a 443
           |
Sbjct: 702 a 702

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,293,575,807
Number of extensions: 72109395
Number of successful extensions: 5672030
Number of sequences better than 10.0: 18
Length of query: 1655
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1631
Effective length of database: 97,308,875,965
Effective search space: 158710776698915
Effective search space used: 158710776698915
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Contig-U11979-1Q.Seq.d
         (1655 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O15818) RecName: Full=Protein KIAA0664 homolog;                      778   0.0
AL607024_2(AL607024|pid:none) Mouse DNA sequence from clone RP23...   261   5e-68
AK154146_1(AK154146|pid:none) Mus musculus NOD-derived CD11c +ve...   261   5e-68
AK154925_1(AK154925|pid:none) Mus musculus NOD-derived CD11c +ve...   261   5e-68
AK157310_1(AK157310|pid:none) Mus musculus activated spleen cDNA...   261   5e-68
CR627449_1(CR627449|pid:none) Homo sapiens mRNA; cDNA DKFZp686L0...   261   5e-68
AB093256_1(AB093256|pid:none) Mus musculus premature mRNA for mK...   261   5e-68
(Q8CHD9) RecName: Full=Protein KIAA0664;                              261   5e-68
AK036540_1(AK036540|pid:none) Mus musculus adult male bone cDNA,...   261   5e-68
AK125717_1(AK125717|pid:none) Homo sapiens cDNA FLJ43729 fis, cl...   261   7e-68
(A0JMD0) RecName: Full=Protein KIAA0664 homolog;  &BC125829_1(BC...   261   7e-68
BC072573_1(BC072573|pid:none) Mus musculus RIKEN cDNA 1300001I01...   260   1e-67
(Q17N71) RecName: Full=Protein KIAA0664 homolog;                      251   4e-65
(A1ZAB5) RecName: Full=Protein KIAA0664 homolog;  &AE013599_2332...   250   1e-64
(Q291J5) RecName: Full=Protein KIAA0664 homolog;                      249   2e-64
BT011344_1(BT011344|pid:none) Drosophila melanogaster RH51925 fu...   244   9e-63
BC060069_1(BC060069|pid:none) Mus musculus RIKEN cDNA 1300001I01...   241   7e-62
(A8PJX4) RecName: Full=Protein KIAA0664 homolog;                      230   1e-58
(A4R962) RecName: Full=Protein TIF31 homolog;                         213   2e-53
AF101078_1(AF101078|pid:none) Caenorhabditis elegans CLU-1 (clu-...   211   8e-53
(A8XAA9) RecName: Full=Protein KIAA0664 homolog;                      209   3e-52
(A6SFG0) RecName: Full=Protein TIF31 homolog;                         204   8e-51
(A7ENU3) RecName: Full=Protein TIF31 homolog;                         202   4e-50
(Q2UKX8) RecName: Full=Protein TIF31 homolog;  &AP007155_547(AP0...   201   5e-50
(A1CKI4) RecName: Full=Protein TIF31 homolog;                         200   1e-49
(A2QDB9) RecName: Full=Protein TIF31 homolog;  &AM270014_23(AM27...   200   1e-49
CU633900_426(CU633900|pid:none) Podospora anserina genomic DNA c...   198   4e-49
(B0XXS1) RecName: Full=Protein TIF31 homolog;  &(Q4WXV2) RecName...   197   9e-49
(A1D6Y7) RecName: Full=Protein TIF31 homolog;                         196   2e-48
BC063786_1(BC063786|pid:none) Homo sapiens KIAA0664, mRNA (cDNA ...   196   2e-48
FN357539_16(FN357539|pid:none) Schistosoma mansoni genome sequen...   192   2e-47
(Q4PA50) RecName: Full=Protein TIF31 homolog;                         191   5e-47
(A6R8I2) RecName: Full=Protein TIF31 homolog;                         191   9e-47
(O59742) RecName: Full=Protein TIF31 homolog;  &AL023634_6(AL023...   187   1e-45
T40522(T40522)hypothetical protein SPBC530.06c - fission yeast  ...   187   1e-45
(Q1E101) RecName: Full=Protein TIF31 homolog;                         187   1e-45
FM992688_465(FM992688|pid:none) Candida dubliniensis CD36 chromo...   185   5e-45
(Q59MA9) RecName: Full=Protein TIF31 homolog;                         183   2e-44
CR382133_133(CR382133|pid:none) Debaryomyces hansenii strain CBS...   179   3e-43
CR548612_176(CR548612|pid:none) Paramecium tetraurelia macronucl...   172   4e-41
(Q5K7G8) RecName: Full=Protein TIF31 homolog;  &AE017353_251(AE0...   167   8e-40
CR382128_754(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   167   1e-39
(A5DWP3) RecName: Full=Protein TIF31 homolog;                         164   7e-39
(A3GG12) RecName: Full=Protein TIF31 homolog;                         164   7e-39
(Q03690) RecName: Full=Protein TIF31;  &AF004911_1(AF004911|pid:...   151   8e-35
CU928168_318(CU928168|pid:none) Kluyveromyces thermotolerans str...   141   6e-32
CU469504_2(CU469504|pid:none) Zebrafish DNA sequence from clone ...   140   2e-31
(Q6CIN0) RecName: Full=Protein TIF31 homolog;  &CR382126_1081(CR...   134   1e-29
BC094446_1(BC094446|pid:none) Mus musculus RIKEN cDNA 1300001I01...   113   2e-23
AY811542_1(AY811542|pid:none) Schistosoma japonicum SJCHGC03359 ...    99   3e-19
S40989(S40989)hypothetical protein F55H2.6 - Caenorhabditis eleg...    92   6e-17
AP004801_3(AP004801|pid:none) Oryza sativa Japonica Group genomi...    63   4e-08
AP008208_887(AP008208|pid:none) Oryza sativa (japonica cultivar-...    63   4e-08
AC135414_11(AC135414|pid:none) Medicago truncatula clone mth2-8n...    54   2e-05
FN370080_2(FN370080|pid:none) Schistosoma mansoni genome sequenc...    54   2e-05
AP008210_2076(AP008210|pid:none) Oryza sativa (japonica cultivar...    50   3e-04
AL606445_2(AL606445|pid:none) Oryza sativa genomic DNA, chromoso...    50   3e-04
AM463986_3(AM463986|pid:none) Vitis vinifera contig VV78X059004....    49   7e-04
AC116979_61(AC116979|pid:none) Dictyostelium discoideum chromoso...    48   0.001
AC007591_23(AC007591|pid:none) Arabidopsis thaliana chromosome 1...    46   0.005
AP005248_1(AP005248|pid:none) Oryza sativa Japonica Group genomi...    44   0.013
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso...    44   0.023
AC159448_24(AC159448|pid:none) Trypanosoma brucei chromosome 8 c...    42   0.051
AM476643_1(AM476643|pid:none) Vitis vinifera contig VV78X063926....    40   0.19
FN369878_1(FN369878|pid:none) Schistosoma mansoni genome sequenc...    39   0.56
CP000376_513(CP000376|pid:none) Silicibacter sp. TM1040 mega pla...    36   3.6
FN357342_28(FN357342|pid:none) Schistosoma mansoni genome sequen...    36   3.6
AC116977_59(AC116977|pid:none) Dictyostelium discoideum chromoso...    35   6.2
U70376_21(U70376|pid:none) Streptomyces flavopersicus spectinomy...    35   6.2
CP001083_1399(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    35   6.2
AM502234_175(AM502234|pid:none) Leishmania infantum chromosome 16.     35   8.1

>(O15818) RecName: Full=Protein KIAA0664 homolog;
          Length = 1320

 Score =  778 bits (2009), Expect = 0.0
 Identities = 402/470 (85%), Positives = 406/470 (86%), Gaps = 1/470 (0%)
 Frame = +1

Query: 247  IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSLFTS 426
            IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSLFTS
Sbjct: 93   IPEYSELSSIEGLVEGATLEMVPVDYNERSAKLHVKRLRDIMNTGLTEFANMNNPSLFTS 152

Query: 427  FSFPEKSNILTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIATEQQQXXXXXXXXXXXX 606
            FSFPEKSNILT                             TIATEQQQ
Sbjct: 153  FSFPEKSNILTEEQQLEEQKQKFEQQQQQQQQTEDKEEKETIATEQQQNKKNKHHNKKGN 212

Query: 607  XXXXXXXXXXXXXXXXKLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKSMIY 786
                            KLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKSMIY
Sbjct: 213  KKNNGDESLNNENNEEKLTPQQKERKQKMTEIKGIDKPMLSSYYPESPIAPVQCVKSMIY 272

Query: 787  SGWSPVPGYRKLFGDLFYLDITLLEGTTICVTASTQGFFINQSSNATFNPSVSPKATINH 966
            SGWSPVPGYRKLFGDLFYLDITLLEGTTICVTASTQGFFINQSSNATFNPSVSPKATINH
Sbjct: 273  SGWSPVPGYRKLFGDLFYLDITLLEGTTICVTASTQGFFINQSSNATFNPSVSPKATINH 332

Query: 967  SLHQLLTQVSRLFRRGLNQILTNIGRNHPFDMLPGVLPVHNWVASSKTNRYDINKGTDTF 1146
            SLHQLLTQVSRLFRRGLNQILTNIGRNHPFDMLPGVLPVHNWVASSKTNRYDINKGTDTF
Sbjct: 333  SLHQLLTQVSRLFRRGLNQILTNIGRNHPFDMLPGVLPVHNWVASSKTNRYDINKGTDTF 392

Query: 1147 VSVQDVELRGNPRDWNEEIQAPKELPKSTVQERIIRDRAISKVNSEFVECAIRGAQVIVD 1326
            VSVQDVELRGNPRDWNEEIQAPKELPKSTVQERIIRDRAISKVNSEFVECAIRGAQVIVD
Sbjct: 393  VSVQDVELRGNPRDWNEEIQAPKELPKSTVQERIIRDRAISKVNSEFVECAIRGAQVIVD 452

Query: 1327 KAILPINPAENQRSHMFLYNNIFFSYALDTRDSFTDCGGDDAARTSANNDLKGIRLYNLA 1506
            KAILPINPAENQRSHMFLYNNIFFSYALDTRDSFTDCGGDDAARTSANNDLKGIRLYNLA
Sbjct: 453  KAILPINPAENQRSHMFLYNNIFFSYALDTRDSFTDCGGDDAARTSANNDLKGIRLYNLA 512

Query: 1507 DIDGLYTLGTAIVDYKGQRIIAQSLIPGILTTKKLQK-FIRFKDTPTNKK 1653
            DIDGLYTLGTAIVDYKGQRIIAQSLIPGILTT+K  K +    DTPTN++
Sbjct: 513  DIDGLYTLGTAIVDYKGQRIIAQSLIPGILTTEKTSKIYYGSMDTPTNEE 562

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,096,387,119
Number of extensions: 43492139
Number of successful extensions: 96580
Number of sequences better than 10.0: 71
Number of HSP's gapped: 96475
Number of HSP's successfully gapped: 95
Length of query: 551
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 417
Effective length of database: 617,481,958
Effective search space: 257489976486
Effective search space used: 257489976486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.64  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U11979-1 is cyt
VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0