Contig-U11962-1 |
Contig ID |
Contig-U11962-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2015 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
2968789 |
End point |
2966839 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
6 |
Link to clone list |
U11962 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.28 |
Homology vs DNA |
Query= Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Contig-U11962-1Q.Seq.d (2025 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ387429) Dictyostelium discoideum cDNA clone:dds2d14, 5' e... 1045 0.0 1 (BJ380648) Dictyostelium discoideum cDNA clone:ddc38i20, 3' ... 745 0.0 2 (BJ398835) Dictyostelium discoideum cDNA clone:dds2g17, 3' e... 918 0.0 1 (BJ398824) Dictyostelium discoideum cDNA clone:dds2d14, 3' e... 767 0.0 2 (BJ387438) Dictyostelium discoideum cDNA clone:dds2g17, 5' e... 628 0.0 3 (AU074064) Dictyostelium discoideum slug cDNA, clone SSJ431. 127 2e-24 1 (AU073759) Dictyostelium discoideum slug cDNA, clone SSI301. 127 2e-24 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 9e-06 21 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 3e-04 19 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.002 17 (AX344835) Sequence 260 from Patent WO0200927. 40 0.006 5 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 44 0.007 20 (AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 34 0.010 13 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 32 0.010 14 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 0.020 20 (AM427945) Vitis vinifera contig VV78X235933.43, whole genom... 54 0.021 1 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 0.024 15 (AX344560) Sequence 11 from Patent WO0200932. 42 0.028 12 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.045 18 (CT583666) Zebrafish DNA sequence from clone CH211-176P17 in... 40 0.053 2 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 0.071 17 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.090 20 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 34 0.11 12 (AC168520) Strongylocentrotus purpuratus clone R3-3108F15, W... 38 0.12 7 (CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 34 0.13 15 (AL034558) Plasmodium falciparum MAL3P2. 34 0.13 14 (CP000924) Thermoanaerobacter pseudethanolicus ATCC 33223, c... 44 0.13 23 (AL117193) Caenorhabditis elegans YAC Y105C5A. 34 0.15 11 (AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 36 0.16 15 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 38 0.16 2 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 38 0.16 2 (CP000727) Clostridium botulinum A str. Hall, complete genome. 38 0.16 2 (CU463046) Medicago truncatula chromosome 5 clone mth4-41d3,... 36 0.22 10 (AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 38 0.23 21 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.28 21 (CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.31 21 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 0.33 13 (CZ540856) SRAA-aad34f03.g1 Strongyloides ratti whole genome... 50 0.33 1 (CZ539392) SRAA-aad25d12.g1 Strongyloides ratti whole genome... 50 0.33 1 (EH226405) JGI_ACAC3562.fwd ACAC Phakopsora pachyrhizi TW72-... 50 0.33 1 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.34 19 (AC117080) Dictyostelium discoideum chromosome 2 map complem... 38 0.36 7 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 36 0.45 14 (ED234021) AUAC-aaf69a10.g1 Ascaris suum whole genome shotgu... 36 0.46 3 (AC202324) Medicago truncatula clone mth2-160m22, WORKING DR... 36 0.49 9 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 40 0.50 23 (AC168232) Bos taurus clone CH240-210O8, WORKING DRAFT SEQUE... 34 0.58 12 (EJ443415) 1093015313743 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.63 3 (EV321016) G772P527RG7.T0 Culex pipiens quinquefasciatus Bac... 40 0.68 2 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.68 19 (AC099476) Rattus norvegicus BAC CH230-159G8 (Children's Ho... 36 0.70 2 (ED394895) AUAC-aam57d07.b1 Ascaris suum whole genome shotgu... 36 0.76 3 (AZ692678) ENTHD22TF Entamoeba histolytica Sheared DNA Entam... 36 0.92 2 (BH165792) ENTSP90TR Entamoeba histolytica Sheared DNA Entam... 38 0.92 2 (AZ674388) ENTLU88TR Entamoeba histolytica Sheared DNA Entam... 36 0.92 2 (AZ532952) ENTCH34TR Entamoeba histolytica Sheared DNA Entam... 36 0.92 2 (AZ672620) ENTKU30TR Entamoeba histolytica Sheared DNA Entam... 38 0.92 2 (AZ530149) ENTBP52TF Entamoeba histolytica Sheared DNA Entam... 36 0.92 2 (AZ684872) ENTHW17TF Entamoeba histolytica Sheared DNA Entam... 38 0.92 2 (AM666421) Entamoeba terrapinae GSS, clone terra056b09.q1k. 38 0.93 2 (AM052061) Dasytricha ruminantium EST, clone Dr03_H01. 34 0.94 2 (AM052064) Dasytricha ruminantium EST, clone Dr04_A08. 34 0.94 2 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 1.0 12 (CU234174) Zebrafish DNA sequence from clone CH73-71G21 in l... 36 1.2 4 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 1.3 15 (AC211305) Populus trichocarpa clone POP004-I01, complete se... 48 1.3 1 (AR555763) Sequence 10894 from patent US 6747137. 48 1.3 1 (AR345955) Sequence 566 from patent US 6583275. 48 1.3 1 (AC208311) Zea mays chromosome unknown clone CH201-336B3; ZM... 48 1.3 1 (AC202711) Zea mays chromosome unknown clone CH201-403I19; Z... 48 1.3 1 (AC184353) Strongylocentrotus purpuratus clone R3-3115G18, W... 48 1.3 1 (AC180275) Strongylocentrotus purpuratus clone R3-3123O09, W... 48 1.3 1 (AC179850) Strongylocentrotus purpuratus clone R3-1007K23, W... 48 1.3 1 (AC178123) Strongylocentrotus purpuratus clone R3-3074L14, W... 48 1.3 1 (AC178122) Strongylocentrotus purpuratus clone R3-3074K11, W... 48 1.3 1 (AC177577) Strongylocentrotus purpuratus clone R3-1025O21, W... 48 1.3 1 (AC177045) Strongylocentrotus purpuratus clone R3-1038C17, W... 48 1.3 1 (AC168562) Strongylocentrotus purpuratus clone R3-3091C13, W... 48 1.3 1 (CW414019) fsbb001f113h10f0 Sorghum methylation filtered lib... 48 1.3 1 (EL157596) EB3RODY01BHULR 8-day Arabidopsis seedlings, aeria... 48 1.3 1 (EE104222) SBB05767 Inflorescence (VvS11) Vitis vinifera cDN... 48 1.3 1 (DT523088) WS02038.B21_M01 PTxN-IB-N-A-11 Populus trichocarp... 48 1.3 1 (DB895040) Populus nigra mRNA, clone: PnFL2-011_P11, 3'end. 48 1.3 1 (CX185614) D06_45-47_08.ab1 leaf inoculated with Marssonia p... 48 1.3 1 (CX185406) F03_45-82_11.ab1 leaf inoculated with Marssonia p... 48 1.3 1 (CX181881) D09_45-36_07.ab1 leaf inoculated with Marssonia p... 48 1.3 1 (CX170958) C04_69-34_06.ab1 leaf inoculated with Marssonia p... 48 1.3 1 (CV232170) WS0196.B21_M08 PT-DX-N-A-10 Populus trichocarpa c... 48 1.3 1 (CV229589) WS01913.B21_M21 PT-DX-N-A-10 Populus trichocarpa ... 48 1.3 1 (CV228327) WS0191.B21_L21 PT-DX-N-A-10 Populus trichocarpa c... 48 1.3 1 (CV226273) WS0163.B21_M16 PT-DX-A-7 Populus trichocarpa cDNA... 48 1.3 1 (CV225542) WS0161.B21_L09 PT-DX-A-7 Populus trichocarpa cDNA... 48 1.3 1 (AM043244) Schistosoma mansoni lung schistosomulum EST, clon... 48 1.3 1 (CP000521) Acinetobacter baumannii ATCC 17978, complete genome. 48 1.3 1 (BZ225256) CH230-497A9.TV CHORI-230 Segment 2 Rattus norvegi... 32 1.3 3 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 1.4 15 (CP000768) Campylobacter jejuni subsp. doylei 269.97, comple... 36 1.5 20 (CL536397) trib016xh17.g1 T. reesei HindIII BAC library Hypo... 34 1.6 3 (BH962990) odh66c09.g1 B.oleracea002 Brassica oleracea genom... 40 1.6 3 (AC160294) Bos taurus clone CH240-86B2, WORKING DRAFT SEQUEN... 42 1.7 11
>(BJ387429) Dictyostelium discoideum cDNA clone:dds2d14, 5' end, single read. Length = 644
Score = 1045 bits (527), Expect = 0.0 Identities = 527/527 (100%) Strand = Plus / Plus
Query: 580 ttacaagttattgatgtaccattagtaagtgataaaagtttagaagaattaggtagatta 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 ttacaagttattgatgtaccattagtaagtgataaaagtttagaagaattaggtagatta 176
Query: 640 ttttcaattgatatttcaccaacattattatatggacgtggtgcattggtaaagttatta 699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 ttttcaattgatatttcaccaacattattatatggacgtggtgcattggtaaagttatta 236
Query: 700 atttcatcatcagcatcaagatatttagaatttaaatcattggatcaaaattatttattt 759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 atttcatcatcagcatcaagatatttagaatttaaatcattggatcaaaattatttattt 296
Query: 760 acaaatggaaaagtacatgaaattccatcaactaaaggttcaatttttaaagatagtaca 819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 acaaatggaaaagtacatgaaattccatcaactaaaggttcaatttttaaagatagtaca 356
Query: 820 ttctctttgaaagagaaacgtttaattatgaaattcatggaatcaattagagaattgaaa 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 ttctctttgaaagagaaacgtttaattatgaaattcatggaatcaattagagaattgaaa 416
Query: 880 aaggaaggatcagatttagatgacgctgaaaaagaagcccatttcaaattatcaatcatt 939 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 aaggaaggatcagatttagatgacgctgaaaaagaagcccatttcaaattatcaatcatt 476
Query: 940 gaattaggaaaacaattcaaaagtttcattgactatattaaaagttttaaattcactcaa 999 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 477 gaattaggaaaacaattcaaaagtttcattgactatattaaaagttttaaattcactcaa 536
Query: 1000 ttggttgaatcattcattctatatggtttatcattgattcatgaggatttagaatcgatt 1059 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 ttggttgaatcattcattctatatggtttatcattgattcatgaggatttagaatcgatt 596
Query: 1060 ccattggaaactggtattgagtctgtattcctctacacatcgtcttt 1106 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 597 ccattggaaactggtattgagtctgtattcctctacacatcgtcttt 643
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,235,628,075 Number of extensions: 149932826 Number of successful extensions: 13222793 Number of sequences better than 10.0: 250 Length of query: 2025 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 2001 Effective length of database: 97,308,875,965 Effective search space: 194715060805965 Effective search space used: 194715060805965 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
2 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |