Contig-U11962-1
Contig ID Contig-U11962-1
Contig update 2002.12.18
Contig sequence
>Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Contig-U11962-1Q.Seq.d
AATTTAAAATATCACCACCACAACACACACAAAACTTTGTTTTATAAAAT
AAAAAAATAAGAAATATATAAATCAGTAAAAATAAAATAAAATTAAAGAA
TTACGATGGAAGAACATAGAAAAACTAGCACTTGGTTAGAAAATGATAAA
TTCGATTGTGTAATATTAGGTACTGGTTTAGTTGAATCACTAGTTGCAGG
TGCATTGGCAAGAGCAGGTAAACAAGTTTTACATTTTGATAAAAAAGTAA
TTTATGGTGGTTTTGATAGTTCATTCACTTTAGGTCAACTTACAAAAATT
TTACAAGAATCTAATATAAATAACATCATTGATAAAAATGATTTGGTTCC
ACCATATTTTGAAAATGTAGTAATAAATAAACTTGTAAAAACACCATCAC
CACAACCAAATGAGGAAGAAGAAGATAAAAAAAGTAAACAAGATAATAAA
GAAAATGAAACAATAACAACAACAAAAACCACAACAACAACAACAACCAC
AACAAACGAAAACAATAAAGAACAAAAAGAAGAAGAAGAAAATATAAAAT
CAATAGAAAATAAAGAATCGACAGAAATATTACAAGTTATTGATGTACCA
TTAGTAAGTGATAAAAGTTTAGAAGAATTAGGTAGATTATTTTCAATTGA
TATTTCACCAACATTATTATATGGACGTGGTGCATTGGTAAAGTTATTAA
TTTCATCATCAGCATCAAGATATTTAGAATTTAAATCATTGGATCAAAAT
TATTTATTTACAAATGGAAAAGTACATGAAATTCCATCAACTAAAGGTTC
AATTTTTAAAGATAGTACATTCTCTTTGAAAGAGAAACGTTTAATTATGA
AATTCATGGAATCAATTAGAGAATTGAAAAAGGAAGGATCAGATTTAGAT
GACGCTGAAAAAGAAGCCCATTTCAAATTATCAATCATTGAATTAGGAAA
ACAATTCAAAAGTTTCATTGACTATATTAAAAGTTTTAAATTCACTCAAT
TGGTTGAATCATTCATTCTATATGGTTTATCATTGATTCATGAGGATTTA
GAATCGATTCCATTGGAAACTGGTATTGAGTCTGTATTCCTCTACACATC
GTCTTT----------ACTATTCAAACAACTCATTTCATAACTTCTCCAA
AATATTTAAATACAATTTCATCATCACAAAATAATTTAATTTTACCACAA
AAAACTATTAGAAAAACTTATTCTAGATTTATTGGTATCATTGAATCAAA
AATTATTGGTACTCAAAATGATTCATTCATTACAATTCCGCCAAAATCAA
TTGGAAATAATAAAAATGTTATTAACATTTTACAGATTATCTTCAATTTG
TGTTCCATATAATAAGAATAAAGCACTTATTCATTTTACAACTTTAGCAG
ATTCAACAGCAGAAAATGATTTAAAACAATGTGTCGAACAAATATTAAAT
AATAATACTACTAAAAAAGATAATGATAAAGATAGTACTTCGCCAACATT
GCTTTGGGGTTCTTATTTTAATTATTCAGTTGATTTCGTTGAATCAATTC
ATCAAGAAAATGATAATAATATTATAGTTTGTTCAGATTCACCAAATGGT
CAAACTGTCGATTATGAATACCAAATTAATCAAGCAAAGAAAATTTTTGA
AACAATTTGTCCTGGTCAAATTTTCTTGGAAAAAGTTCCAGATGCTGATG
ATATTATTCATTTCGAAGAGGCTGAAACTACAACTACCACTACTACCACT
ACAACTGAAACTACAAATGAAAATGAAAAAGAAACTGAAACTGAACAAGA
AAAAGAACAAGAAAAAGAACAAGAAAAAGAAAAAGAACAAGAAAAAGAAC
AAGAAAAAGAAAAAGAACAAGAAAAAGAGGTAGAAAAAGAGGTAGAAAAA
GATATCGAAAAAAAAGAATAAAAATATTTAATTTTAATTTAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 2015
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2968789
End point 2966839
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 6
Link to clone list U11962
List of clone(s)

est1=SFA568F,1,623
est2=SFA850F,464,1107
est3=CHI277Z,1108,1757
est4=SFA568Z,1165,1776
est5=SFA850Z,1244,1855
est6=SSI301F,1650,2017
Translated Amino Acid sequence
nlkyhhhnthktlfykikk*eiyksvkik*n*RITMEEHRKTSTWLENDKFDCVILGTGL
VESLVAGALARAGKQVLHFDKKVIYGGFDSSFTLGQLTKILQESNINNIIDKNDLVPPYF
ENVVINKLVKTPSPQPNEEEEDKKSKQDNKENETITTTKTTTTTTTTTNENNKEQKEEEE
NIKSIENKESTEILQVIDVPLVSDKSLEELGRLFSIDISPTLLYGRGALVKLLISSSASR
YLEFKSLDQNYLFTNGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGSDLD
DAEKEAHFKLSIIELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLESIPLETGIE
SVFLYTSS---

---TIQTTHFITSPKYLNTISSSQNNLILPQKTIRKTYSRFIGIIESKIIGTQNDSFITI
PPKSIGNNKNVINILQIIFNLCSI**e*stysfynfsrfnsrk*fktmcrtnik**yy*k
r***r*yfanialgflf*lfs*fr*inssrk***yyslfrftkwsncrl*ipn*sskenf
*nnlswsnflgkssrc**yysfrrg*nynyhyyhyn*nyk*k*krn*n*trkrtrkrtrk
rkrtrkrtrkrkrtrkrgrkrgrkryrkkrikifnfnlknkkkkkkkkkkkkkkkkkkkk
kkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nlkyhhhnthktlfykikk*eiyksvkik*n*RITMEEHRKTSTWLENDKFDCVILGTGL
VESLVAGALARAGKQVLHFDKKVIYGGFDSSFTLGQLTKILQESNINNIIDKNDLVPPYF
ENVVINKLVKTPSPQPNEEEEDKKSKQDNKENETITTTKTTTTTTTTTNENNKEQKEEEE
NIKSIENKESTEILQVIDVPLVSDKSLEELGRLFSIDISPTLLYGRGALVKLLISSSASR
YLEFKSLDQNYLFTNGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGSDLD
DAEKEAHFKLSIIELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLESIPLETGIE
SVFLYTSS---

---TIQTTHFITSPKYLNTISSSQNNLILPQKTIRKTYSRFIGIIESKIIGTQNDSFITI
PPKSIGNNKNVINILQIIFNLCSI**e*stysfynfsrfnsrk*fktmcrtnik**yy*k
r***r*yfanialgflf*lfs*fr*inssrk***yyslfrftkwsncrl*ipn*sskenf
*nnlswsnflgkssrc**yysfrrg*nynyhyyhyn*nyk*k*krn*n*trkrtrkrtrk
rkrtrkrtrkrkrtrkrgrkrgrkryrkkrikifnfnlknkkkkkkkkkkkkkkkkkkkk
kkkkkk

Frame B:
i*nitttthtklcfik*knkkyinq*k*nkikelrwknieklalg*kminsiv*y*vlv*
lnh*lqvhwqeqvnkfyilikk*fmvvlivhsl*vnlqkfyknli*itslikmiwfhhil
km***inl*khhhhnqmrkkkikkvnkiikkmkq*qqqkpqqqqqpqqtktiknkkkkkk
i*nq*kiknrqkyykllmyh**vikv*kn*vdyfqlifhqhyymdvvhw*sy*fhhqhqd
i*nlnhwikiiylqmekymkfhqlkvqflkivhsl*krnv*l*nswnqlen*krkdqi*m
tlkkkpisnyqsln*ennskvsltilkvlnslnwlnhsfymvyh*fmri*nrfhwklvls
lyssthrl---

---lfkqlis*llqni*iqfhhhkii*fyhkklleklildllvslnqkllvlkmihslqf
rqnqleiikmlltfyrlssicvpynknkalihfttladstaendlkqcveqilnnnttkk
dndkdstsptllwgsyfnysvdfvesihqendnniivcsdspngqtvdyeyqinqakkif
eticpgqiflekvpdaddiihfeeaettttttttttettneneketeteqekeqekeqek
ekeqekeqekekeqekevekevekdiekke*kylili*kikkkkkkkkkkkkkkkkkkkk
kkkkk

Frame C:
fkisppqhtqnfvl*nkkirni*isknkiklknydgrt*kn*hlvrk**irlcnirywfs
*itscrcigksr*tsftf**ksnlwwf**fihfrstyknftri*yk*hh**k*fgstif*
kcsnk*tckntitttk*grrr*kk*tr**rk*nnnnnknhnnnnnhnkrkq*rtkrrrrk
ykinrk*ridrnitsy*ctisk**kfrrir*iifn*yftniiiwtwcigkvinfiisiki
fri*iigsklfiykwkst*nsin*rfnf*r*yilferetfnyeihgin*riekgrirfr*
r*krspfqiinh*irktiqkfh*ly*kf*ihsig*iihsiwfiids*gfridsignwy*v
ciplhivf---

---ysnnsfhnfskifkynfiitk*fnfttkny*knlf*iywyh*iknywysk*fihyns
akinwk**kcy*hftdylqfvfhiirikhlfilql*qiqqqkmi*nnvsnky*iiillkk
imikivlrqhcfgvliliiqlislnqfikkmiiil*fvqihqmvklsimntklikqrkfl
kqfvlvkfswkkfqmlmilfiskrlklqlpllplqlklqmkmkkklklnkkknkkknkkk
kknkkknkkkkknkkkr*kkr*kkiskkknkni*f*fkk*kkkkkkkkkkkkkkkkkkkk
kkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11962-1 (Contig-U11962-1Q)
/CSM_Contig/Contig-U11962-1Q.Seq.d
(2025 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Conti... 2307 0.0
Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U11478-1 (Contig-U11478-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U00454-1 (Contig-U00454-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Conti... 44 6e-04
Contig-U07866-1 (Contig-U07866-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U05407-1 (Contig-U05407-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U09585-1 (Contig-U09585-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti... 40 0.009

>Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Contig-U11962-1Q.Seq.d
Length = 2025

Score = 2307 bits (1164), Expect = 0.0
Identities = 1194/1194 (100%)
Strand = Plus / Plus


Query: 569 cgacagaaatattacaagttattgatgtaccattagtaagtgataaaagtttagaagaat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cgacagaaatattacaagttattgatgtaccattagtaagtgataaaagtttagaagaat 628


Query: 629 taggtagattattttcaattgatatttcaccaacattattatatggacgtggtgcattgg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 taggtagattattttcaattgatatttcaccaacattattatatggacgtggtgcattgg 688


Query: 689 taaagttattaatttcatcatcagcatcaagatatttagaatttaaatcattggatcaaa 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 taaagttattaatttcatcatcagcatcaagatatttagaatttaaatcattggatcaaa 748


Query: 749 attatttatttacaaatggaaaagtacatgaaattccatcaactaaaggttcaattttta 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 attatttatttacaaatggaaaagtacatgaaattccatcaactaaaggttcaattttta 808


Query: 809 aagatagtacattctctttgaaagagaaacgtttaattatgaaattcatggaatcaatta 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aagatagtacattctctttgaaagagaaacgtttaattatgaaattcatggaatcaatta 868


Query: 869 gagaattgaaaaaggaaggatcagatttagatgacgctgaaaaagaagcccatttcaaat 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gagaattgaaaaaggaaggatcagatttagatgacgctgaaaaagaagcccatttcaaat 928


Query: 929 tatcaatcattgaattaggaaaacaattcaaaagtttcattgactatattaaaagtttta 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 tatcaatcattgaattaggaaaacaattcaaaagtttcattgactatattaaaagtttta 988


Query: 989 aattcactcaattggttgaatcattcattctatatggtttatcattgattcatgaggatt 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 aattcactcaattggttgaatcattcattctatatggtttatcattgattcatgaggatt 1048


Query: 1049 tagaatcgattccattggaaactggtattgagtctgtattcctctacacatcgtctttnn 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 tagaatcgattccattggaaactggtattgagtctgtattcctctacacatcgtctttnn 1108


Query: 1109 nnnnnnnnactattcaaacaactcatttcataacttctccaaaatatttaaatacaattt 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 nnnnnnnnactattcaaacaactcatttcataacttctccaaaatatttaaatacaattt 1168


Query: 1169 catcatcacaaaataatttaattttaccacaaaaaactattagaaaaacttattctagat 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 catcatcacaaaataatttaattttaccacaaaaaactattagaaaaacttattctagat 1228


Query: 1229 ttattggtatcattgaatcaaaaattattggtactcaaaatgattcattcattacaattc 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 ttattggtatcattgaatcaaaaattattggtactcaaaatgattcattcattacaattc 1288


Query: 1289 cgccaaaatcaattggaaataataaaaatgttattaacattttacagattatcttcaatt 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 cgccaaaatcaattggaaataataaaaatgttattaacattttacagattatcttcaatt 1348


Query: 1349 tgtgttccatataataagaataaagcacttattcattttacaactttagcagattcaaca 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 tgtgttccatataataagaataaagcacttattcattttacaactttagcagattcaaca 1408


Query: 1409 gcagaaaatgatttaaaacaatgtgtcgaacaaatattaaataataatactactaaaaaa 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 gcagaaaatgatttaaaacaatgtgtcgaacaaatattaaataataatactactaaaaaa 1468


Query: 1469 gataatgataaagatagtacttcgccaacattgctttggggttcttattttaattattca 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 gataatgataaagatagtacttcgccaacattgctttggggttcttattttaattattca 1528


Query: 1529 gttgatttcgttgaatcaattcatcaagaaaatgataataatattatagtttgttcagat 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 gttgatttcgttgaatcaattcatcaagaaaatgataataatattatagtttgttcagat 1588


Query: 1589 tcaccaaatggtcaaactgtcgattatgaataccaaattaatcaagcaaagaaaattttt 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 tcaccaaatggtcaaactgtcgattatgaataccaaattaatcaagcaaagaaaattttt 1648


Query: 1649 gaaacaatttgtcctggtcaaattttcttggaaaaagttccagatgctgatgatattatt 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 gaaacaatttgtcctggtcaaattttcttggaaaaagttccagatgctgatgatattatt 1708


Query: 1709 catttcgaagaggctgaaactacaactaccactactaccactacaactgaaact 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 catttcgaagaggctgaaactacaactaccactactaccactacaactgaaact 1762


Score = 632 bits (319), Expect = 0.0
Identities = 319/319 (100%)
Strand = Plus / Plus


Query: 98 gaattacgatggaagaacatagaaaaactagcacttggttagaaaatgataaattcgatt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gaattacgatggaagaacatagaaaaactagcacttggttagaaaatgataaattcgatt 157


Query: 158 gtgtaatattaggtactggtttagttgaatcactagttgcaggtgcattggcaagagcag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gtgtaatattaggtactggtttagttgaatcactagttgcaggtgcattggcaagagcag 217


Query: 218 gtaaacaagttttacattttgataaaaaagtaatttatggtggttttgatagttcattca 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gtaaacaagttttacattttgataaaaaagtaatttatggtggttttgatagttcattca 277


Query: 278 ctttaggtcaacttacaaaaattttacaagaatctaatataaataacatcattgataaaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctttaggtcaacttacaaaaattttacaagaatctaatataaataacatcattgataaaa 337


Query: 338 atgatttggttccaccatattttgaaaatgtagtaataaataaacttgtaaaaacaccat 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atgatttggttccaccatattttgaaaatgtagtaataaataaacttgtaaaaacaccat 397


Query: 398 caccacaaccaaatgagga 416
|||||||||||||||||||
Sbjct: 398 caccacaaccaaatgagga 416


Score = 83.8 bits (42), Expect = 7e-16
Identities = 42/42 (100%)
Strand = Plus / Plus


Query: 1 aatttaaaatatcaccaccacaacacacacaaaactttgttt 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatttaaaatatcaccaccacaacacacacaaaactttgttt 42


>Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Contig-U11384-1Q.Seq.d
Length = 1424

Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1730 acaactaccactactaccactacaac 1755
||||||||||||||||||||||||||
Sbjct: 206 acaactaccactactaccactacaac 231


>Contig-U11478-1 (Contig-U11478-1Q) /CSM_Contig/Contig-U11478-1Q.Seq.d
Length = 1925

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1727 actacaactaccactactaccac 1749
|||||||||||||||||||||||
Sbjct: 1442 actacaactaccactactaccac 1464


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,914
Number of Sequences: 6905
Number of extensions: 40914
Number of successful extensions: 5335
Number of sequences better than 10.0: 621
length of query: 2025
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2009
effective length of database: 5,564,391
effective search space: 11178861519
effective search space used: 11178861519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.28
Homology vs DNA
Query= Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Contig-U11962-1Q.Seq.d
(2025 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ387429) Dictyostelium discoideum cDNA clone:dds2d14, 5' e... 1045 0.0 1
(BJ380648) Dictyostelium discoideum cDNA clone:ddc38i20, 3' ... 745 0.0 2
(BJ398835) Dictyostelium discoideum cDNA clone:dds2g17, 3' e... 918 0.0 1
(BJ398824) Dictyostelium discoideum cDNA clone:dds2d14, 3' e... 767 0.0 2
(BJ387438) Dictyostelium discoideum cDNA clone:dds2g17, 5' e... 628 0.0 3
(AU074064) Dictyostelium discoideum slug cDNA, clone SSJ431. 127 2e-24 1
(AU073759) Dictyostelium discoideum slug cDNA, clone SSI301. 127 2e-24 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 9e-06 21
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 3e-04 19
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.002 17
(AX344835) Sequence 260 from Patent WO0200927. 40 0.006 5
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 44 0.007 20
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 34 0.010 13
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 32 0.010 14
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 0.020 20
(AM427945) Vitis vinifera contig VV78X235933.43, whole genom... 54 0.021 1
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 0.024 15
(AX344560) Sequence 11 from Patent WO0200932. 42 0.028 12
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.045 18
(CT583666) Zebrafish DNA sequence from clone CH211-176P17 in... 40 0.053 2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 0.071 17
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.090 20
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 34 0.11 12
(AC168520) Strongylocentrotus purpuratus clone R3-3108F15, W... 38 0.12 7
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 34 0.13 15
(AL034558) Plasmodium falciparum MAL3P2. 34 0.13 14
(CP000924) Thermoanaerobacter pseudethanolicus ATCC 33223, c... 44 0.13 23
(AL117193) Caenorhabditis elegans YAC Y105C5A. 34 0.15 11
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 36 0.16 15
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 38 0.16 2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 38 0.16 2
(CP000727) Clostridium botulinum A str. Hall, complete genome. 38 0.16 2
(CU463046) Medicago truncatula chromosome 5 clone mth4-41d3,... 36 0.22 10
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 38 0.23 21
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.28 21
(CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.31 21
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 0.33 13
(CZ540856) SRAA-aad34f03.g1 Strongyloides ratti whole genome... 50 0.33 1
(CZ539392) SRAA-aad25d12.g1 Strongyloides ratti whole genome... 50 0.33 1
(EH226405) JGI_ACAC3562.fwd ACAC Phakopsora pachyrhizi TW72-... 50 0.33 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.34 19
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 38 0.36 7
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 36 0.45 14
(ED234021) AUAC-aaf69a10.g1 Ascaris suum whole genome shotgu... 36 0.46 3
(AC202324) Medicago truncatula clone mth2-160m22, WORKING DR... 36 0.49 9
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 40 0.50 23
(AC168232) Bos taurus clone CH240-210O8, WORKING DRAFT SEQUE... 34 0.58 12
(EJ443415) 1093015313743 Global-Ocean-Sampling_GS-28-01-01-1... 38 0.63 3
(EV321016) G772P527RG7.T0 Culex pipiens quinquefasciatus Bac... 40 0.68 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.68 19
(AC099476) Rattus norvegicus BAC CH230-159G8 (Children's Ho... 36 0.70 2
(ED394895) AUAC-aam57d07.b1 Ascaris suum whole genome shotgu... 36 0.76 3
(AZ692678) ENTHD22TF Entamoeba histolytica Sheared DNA Entam... 36 0.92 2
(BH165792) ENTSP90TR Entamoeba histolytica Sheared DNA Entam... 38 0.92 2
(AZ674388) ENTLU88TR Entamoeba histolytica Sheared DNA Entam... 36 0.92 2
(AZ532952) ENTCH34TR Entamoeba histolytica Sheared DNA Entam... 36 0.92 2
(AZ672620) ENTKU30TR Entamoeba histolytica Sheared DNA Entam... 38 0.92 2
(AZ530149) ENTBP52TF Entamoeba histolytica Sheared DNA Entam... 36 0.92 2
(AZ684872) ENTHW17TF Entamoeba histolytica Sheared DNA Entam... 38 0.92 2
(AM666421) Entamoeba terrapinae GSS, clone terra056b09.q1k. 38 0.93 2
(AM052061) Dasytricha ruminantium EST, clone Dr03_H01. 34 0.94 2
(AM052064) Dasytricha ruminantium EST, clone Dr04_A08. 34 0.94 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 1.0 12
(CU234174) Zebrafish DNA sequence from clone CH73-71G21 in l... 36 1.2 4
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 1.3 15
(AC211305) Populus trichocarpa clone POP004-I01, complete se... 48 1.3 1
(AR555763) Sequence 10894 from patent US 6747137. 48 1.3 1
(AR345955) Sequence 566 from patent US 6583275. 48 1.3 1
(AC208311) Zea mays chromosome unknown clone CH201-336B3; ZM... 48 1.3 1
(AC202711) Zea mays chromosome unknown clone CH201-403I19; Z... 48 1.3 1
(AC184353) Strongylocentrotus purpuratus clone R3-3115G18, W... 48 1.3 1
(AC180275) Strongylocentrotus purpuratus clone R3-3123O09, W... 48 1.3 1
(AC179850) Strongylocentrotus purpuratus clone R3-1007K23, W... 48 1.3 1
(AC178123) Strongylocentrotus purpuratus clone R3-3074L14, W... 48 1.3 1
(AC178122) Strongylocentrotus purpuratus clone R3-3074K11, W... 48 1.3 1
(AC177577) Strongylocentrotus purpuratus clone R3-1025O21, W... 48 1.3 1
(AC177045) Strongylocentrotus purpuratus clone R3-1038C17, W... 48 1.3 1
(AC168562) Strongylocentrotus purpuratus clone R3-3091C13, W... 48 1.3 1
(CW414019) fsbb001f113h10f0 Sorghum methylation filtered lib... 48 1.3 1
(EL157596) EB3RODY01BHULR 8-day Arabidopsis seedlings, aeria... 48 1.3 1
(EE104222) SBB05767 Inflorescence (VvS11) Vitis vinifera cDN... 48 1.3 1
(DT523088) WS02038.B21_M01 PTxN-IB-N-A-11 Populus trichocarp... 48 1.3 1
(DB895040) Populus nigra mRNA, clone: PnFL2-011_P11, 3'end. 48 1.3 1
(CX185614) D06_45-47_08.ab1 leaf inoculated with Marssonia p... 48 1.3 1
(CX185406) F03_45-82_11.ab1 leaf inoculated with Marssonia p... 48 1.3 1
(CX181881) D09_45-36_07.ab1 leaf inoculated with Marssonia p... 48 1.3 1
(CX170958) C04_69-34_06.ab1 leaf inoculated with Marssonia p... 48 1.3 1
(CV232170) WS0196.B21_M08 PT-DX-N-A-10 Populus trichocarpa c... 48 1.3 1
(CV229589) WS01913.B21_M21 PT-DX-N-A-10 Populus trichocarpa ... 48 1.3 1
(CV228327) WS0191.B21_L21 PT-DX-N-A-10 Populus trichocarpa c... 48 1.3 1
(CV226273) WS0163.B21_M16 PT-DX-A-7 Populus trichocarpa cDNA... 48 1.3 1
(CV225542) WS0161.B21_L09 PT-DX-A-7 Populus trichocarpa cDNA... 48 1.3 1
(AM043244) Schistosoma mansoni lung schistosomulum EST, clon... 48 1.3 1
(CP000521) Acinetobacter baumannii ATCC 17978, complete genome. 48 1.3 1
(BZ225256) CH230-497A9.TV CHORI-230 Segment 2 Rattus norvegi... 32 1.3 3
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 1.4 15
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple... 36 1.5 20
(CL536397) trib016xh17.g1 T. reesei HindIII BAC library Hypo... 34 1.6 3
(BH962990) odh66c09.g1 B.oleracea002 Brassica oleracea genom... 40 1.6 3
(AC160294) Bos taurus clone CH240-86B2, WORKING DRAFT SEQUEN... 42 1.7 11

>(BJ387429) Dictyostelium discoideum cDNA clone:dds2d14, 5' end,
single read.
Length = 644

Score = 1045 bits (527), Expect = 0.0
Identities = 527/527 (100%)
Strand = Plus / Plus


Query: 580 ttacaagttattgatgtaccattagtaagtgataaaagtttagaagaattaggtagatta 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttacaagttattgatgtaccattagtaagtgataaaagtttagaagaattaggtagatta 176


Query: 640 ttttcaattgatatttcaccaacattattatatggacgtggtgcattggtaaagttatta 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttttcaattgatatttcaccaacattattatatggacgtggtgcattggtaaagttatta 236


Query: 700 atttcatcatcagcatcaagatatttagaatttaaatcattggatcaaaattatttattt 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atttcatcatcagcatcaagatatttagaatttaaatcattggatcaaaattatttattt 296


Query: 760 acaaatggaaaagtacatgaaattccatcaactaaaggttcaatttttaaagatagtaca 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acaaatggaaaagtacatgaaattccatcaactaaaggttcaatttttaaagatagtaca 356


Query: 820 ttctctttgaaagagaaacgtttaattatgaaattcatggaatcaattagagaattgaaa 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttctctttgaaagagaaacgtttaattatgaaattcatggaatcaattagagaattgaaa 416


Query: 880 aaggaaggatcagatttagatgacgctgaaaaagaagcccatttcaaattatcaatcatt 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaggaaggatcagatttagatgacgctgaaaaagaagcccatttcaaattatcaatcatt 476


Query: 940 gaattaggaaaacaattcaaaagtttcattgactatattaaaagttttaaattcactcaa 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattaggaaaacaattcaaaagtttcattgactatattaaaagttttaaattcactcaa 536


Query: 1000 ttggttgaatcattcattctatatggtttatcattgattcatgaggatttagaatcgatt 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttggttgaatcattcattctatatggtttatcattgattcatgaggatttagaatcgatt 596


Query: 1060 ccattggaaactggtattgagtctgtattcctctacacatcgtcttt 1106
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ccattggaaactggtattgagtctgtattcctctacacatcgtcttt 643

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,235,628,075
Number of extensions: 149932826
Number of successful extensions: 13222793
Number of sequences better than 10.0: 250
Length of query: 2025
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2001
Effective length of database: 97,308,875,965
Effective search space: 194715060805965
Effective search space used: 194715060805965
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Contig-U11962-1Q.Seq.d
(2025 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC020580_13(AC020580|pid:none) Arabidopsis thaliana chromosome 3... 95 1e-17
AF409086_1(AF409086|pid:none) Arabidopsis thaliana Rab escort pr... 95 1e-17
BC078011_1(BC078011|pid:none) Xenopus laevis CHML protein, mRNA ... 89 8e-16
BC096773_1(BC096773|pid:none) Danio rerio choroideremia, mRNA (c... 85 1e-14
BC154207_1(BC154207|pid:none) Danio rerio choroideremia, mRNA (c... 85 1e-14
AJ720048_1(AJ720048|pid:none) Gallus gallus mRNA for hypothetica... 85 1e-14
AY500891_1(AY500891|pid:none) Danio rerio Rab escort protein 1 (... 85 1e-14
AF189156_1(AF189156|pid:none) Mus musculus rab escort protein-2 ... 83 4e-14
AF482427_2(AF482427|pid:none) Mus musculus encephalopsin (Opn3) ... 82 1e-13
(Q9QZD5) RecName: Full=Rab proteins geranylgeranyltransferase co... 82 1e-13
AK299323_1(AK299323|pid:none) Homo sapiens cDNA FLJ58404 complet... 80 2e-13
(P24386) RecName: Full=Rab proteins geranylgeranyltransferase co... 80 2e-13
(P26374) RecName: Full=Rab proteins geranylgeranyltransferase co... 80 2e-13
AK291160_1(AK291160|pid:none) Homo sapiens cDNA FLJ78016 complet... 80 2e-13
X64728_1(X64728|pid:none) H.sapiens CHML mRNA. 80 2e-13
I37234(I37234;S11660;A41937)Rab geranylgeranyltransferase compon... 80 2e-13
(Q9QXG2) RecName: Full=Rab proteins geranylgeranyltransferase co... 80 3e-13
(P37727) RecName: Full=Rab proteins geranylgeranyltransferase co... 79 8e-13
AK035956_1(AK035956|pid:none) Mus musculus 16 days neonate cereb... 79 8e-13
AF105063_1(AF105063|pid:none) Drosophila melanogaster Rab escort... 78 1e-12
(Q9V8W3) RecName: Full=Rab proteins geranylgeranyltransferase co... 78 1e-12
BT053060_1(BT053060|pid:none) Medicago truncatula clone MTYFL_FM... 77 2e-12
AM434248_1(AM434248|pid:none) Vitis vinifera contig VV78X012890.... 71 1e-10
BT055834_1(BT055834|pid:none) Zea mays full-length cDNA clone ZM... 69 5e-10
AM486190_2(AM486190|pid:none) Vitis vinifera contig VV78X000824.... 69 5e-10
EU975974_1(EU975974|pid:none) Zea mays clone 507240 unknown mRNA. 69 7e-10
AK100522_1(AK100522|pid:none) Oryza sativa Japonica Group cDNA c... 68 1e-09
AF012823_1(AF012823|pid:none) Nicotiana tabacum GDP dissociation... 68 1e-09
FN357853_3(FN357853|pid:none) Schistosoma mansoni genome sequenc... 68 1e-09
DQ241841_1(DQ241841|pid:none) Solanum tuberosum clone 181H08 GDP... 67 2e-09
CU928180_341(CU928180|pid:none) Kluyveromyces thermotolerans str... 67 2e-09
AY346010_1(AY346010|pid:none) Hordeum vulgare GDP dissociation i... 67 2e-09
BC078017_1(BC078017|pid:none) Xenopus laevis GDP dissociation in... 67 3e-09
AC134933_9(AC134933|pid:none) Oryza sativa (japonica cultivar-gr... 67 3e-09
T10801(T10801) GDP dissociation inhibitor GDI1 - Volvox carteri ... 67 3e-09
AE016819_416(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 67 3e-09
BC074714_1(BC074714|pid:none) Xenopus tropicalis GDP dissociatio... 67 3e-09
AF016896_1(AF016896|pid:none) Oryza sativa GDP dissociation inhi... 67 3e-09
AP008207_965(AP008207|pid:none) Oryza sativa (japonica cultivar-... 67 3e-09
BC043955_1(BC043955|pid:none) Xenopus laevis GDP dissociation in... 67 3e-09
AC144517_22(AC144517|pid:none) Medicago truncatula clone mth2-13... 66 4e-09
AE017347_16(AE017347|pid:none) Cryptococcus neoformans var. neof... 65 7e-09
EF676817_1(EF676817|pid:none) Picea sitchensis clone WS02753_I09... 65 7e-09
AK069636_1(AK069636|pid:none) Oryza sativa Japonica Group cDNA c... 65 7e-09
BC095329_1(BC095329|pid:none) Danio rerio GDP dissociation inhib... 65 9e-09
CU928179_374(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 65 1e-08
BT039998_1(BT039998|pid:none) Zea mays full-length cDNA clone ZM... 65 1e-08
FJ755907_1(FJ755907|pid:none) Nicotiana benthamiana Rab GDP diss... 65 1e-08
AF076291_1(AF076291|pid:none) Gallus gallus Rab-GDP dissociation... 64 2e-08
EF145864_1(EF145864|pid:none) Populus trichocarpa clone WS0113_N... 64 2e-08
AJ401079_1(AJ401079|pid:none) Lycopersicon esculentum partial mR... 64 2e-08
(O97555) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 64 2e-08
AM710298_1(AM710298|pid:none) Lycopersicon esculentum GDI1 gene ... 64 2e-08
BT086456_1(BT086456|pid:none) Zea mays full-length cDNA clone ZM... 64 2e-08
(Q8HXX7) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 64 3e-08
B56024(B56024) GDP dissociation inhibitor 1 - rat &U07952_1(U07... 64 3e-08
AF251042_1(AF251042|pid:none) Mus musculus rab GDP dissociation ... 64 3e-08
CR380957_78(CR380957|pid:none) Candida glabrata strain CBS138 ch... 64 3e-08
(P39958) RecName: Full=Rab GDP-dissociation inhibitor; ... 64 3e-08
CR860770_1(CR860770|pid:none) Pongo abelii mRNA; cDNA DKFZp459B1... 64 3e-08
(P50398) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 64 3e-08
AK073143_1(AK073143|pid:none) Oryza sativa Japonica Group cDNA c... 64 3e-08
AY665236_1(AY665236|pid:none) Saimiri boliviensis GDP dissociati... 64 3e-08
AK079690_1(AK079690|pid:none) Mus musculus 0 day neonate thymus ... 64 3e-08
AK143681_1(AK143681|pid:none) Mus musculus 6 days neonate spleen... 63 4e-08
(P31150) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 63 4e-08
BC053381_1(BC053381|pid:none) Mus musculus guanosine diphosphate... 63 4e-08
AJ005836_1(AJ005836|pid:none) Cicer arietinum mRNA for GDP disso... 63 4e-08
AK167659_1(AK167659|pid:none) Mus musculus 12 days pregnant adul... 63 4e-08
(P21856) RecName: Full=Rab GDP dissociation inhibitor alpha; ... 63 4e-08
AF016897_1(AF016897|pid:none) Oryza sativa GDP dissociation inhi... 63 4e-08
AK007871_1(AK007871|pid:none) Mus musculus 10 day old male pancr... 63 4e-08
AK150655_1(AK150655|pid:none) Mus musculus bone marrow macrophag... 63 4e-08
B54091(B54091;S35965) rab GDP dissociation inhibitor beta - rat ... 63 5e-08
CR926033_1(CR926033|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1... 63 5e-08
FJ943973_1(FJ943973|pid:none) Ovis aries GDI2 mRNA, complete cds. 62 6e-08
AY891945_1(AY891945|pid:none) Synthetic construct Homo sapiens c... 62 6e-08
AF255332_1(AF255332|pid:none) Kluyveromyces lactis putative GDP ... 62 6e-08
(Q6Q7J2) RecName: Full=Rab GDP dissociation inhibitor beta; ... 62 6e-08
AL596094_8(AL596094|pid:none) Human DNA sequence from clone RP11... 62 6e-08
A56024(A56024)GDP dissociation inhibitor 2 - mouse 62 6e-08
CR382124_253(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 62 6e-08
(P50395) RecName: Full=Rab GDP dissociation inhibitor beta; ... 62 6e-08
AL596094_7(AL596094|pid:none) Human DNA sequence from clone RP11... 62 6e-08
AK316933_1(AK316933|pid:none) Arabidopsis thaliana AT2G44100 mRN... 62 8e-08
AC004005_24(AC004005|pid:none) Arabidopsis thaliana chromosome 2... 62 8e-08
AY086920_1(AY086920|pid:none) Arabidopsis thaliana clone 29536 m... 62 8e-08
A54091(A54091;S35964;A37996)rab GDP dissociation inhibitor alpha... 62 8e-08
X74402_1(X74402|pid:none) R.norvegicus rab GDI alpha mRNA. 62 8e-08
D45021_1(D45021|pid:none) Human mRNA for rab GDI alpha, complete... 62 8e-08
(O97556) RecName: Full=Rab GDP dissociation inhibitor beta; ... 62 8e-08
S36746(S36746;S62097;S37806)GDP dissociation inhibitor - fruit f... 62 1e-07
AE014134_1714(AE014134|pid:none) Drosophila melanogaster chromos... 62 1e-07
CP001327_645(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 62 1e-07
BT044995_1(BT044995|pid:none) Salmo salar clone ssal-rgf-509-157... 61 2e-07
BC072538_1(BC072538|pid:none) Rattus norvegicus GDP dissociation... 60 2e-07
AK294893_1(AK294893|pid:none) Homo sapiens cDNA FLJ58843 complet... 60 2e-07
BT071197_1(BT071197|pid:none) Picea sitchensis clone WS0279_A10 ... 60 3e-07
AK131466_1(AK131466|pid:none) Homo sapiens cDNA FLJ16632 fis, cl... 60 3e-07
X57637_1(X57637|pid:none) H.sapiens mRNA involved in tapetochoro... 60 4e-07
(P32864) RecName: Full=Rab proteins geranylgeranyltransferase co... 60 4e-07
CP000594_40(CP000594|pid:none) Ostreococcus lucimarinus CCE9901 ... 60 4e-07
X70339_2(X70339|pid:none) S.cerevisiae MRS6 gene. 60 4e-07
AC091125_8(AC091125|pid:none) Caenorhabditis elegans cosmid Y67D... 60 4e-07
AC091125_7(AC091125|pid:none) Caenorhabditis elegans cosmid Y67D... 60 4e-07
X70339_1(X70339|pid:none) S.cerevisiae MRS6 gene. 60 4e-07
BT074925_1(BT074925|pid:none) Osmerus mordax clone omor-rgc-511-... 60 4e-07
CR857818_1(CR857818|pid:none) Pongo abelii mRNA; cDNA DKFZp459K2... 59 7e-07
CU928168_25(CU928168|pid:none) Kluyveromyces thermotolerans stra... 59 9e-07
BT042770_1(BT042770|pid:none) Zea mays full-length cDNA clone ZM... 59 9e-07
(Q10305) RecName: Full=Probable secretory pathway GDP dissociati... 59 9e-07
AM270003_39(AM270003|pid:none) Aspergillus niger contig An02c008... 58 1e-06
AK141830_1(AK141830|pid:none) Mus musculus 12 days embryo spinal... 58 2e-06
BT043591_1(BT043591|pid:none) Salmo salar clone HM4_2916 GDP dis... 58 2e-06
CP001142_107(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 57 2e-06
AM270285_16(AM270285|pid:none) Aspergillus niger contig An12c029... 57 2e-06
AE016817_811(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 57 3e-06
CR382138_113(CR382138|pid:none) Debaryomyces hansenii strain CBS... 57 3e-06
CR380956_306(CR380956|pid:none) Candida glabrata strain CBS138 c... 57 3e-06
(O93831) RecName: Full=Rab proteins geranylgeranyltransferase co... 56 6e-06
CP000501_330(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 56 6e-06
AM920430_64(AM920430|pid:none) Penicillium chrysogenum Wisconsin... 56 6e-06
AL009175_2(AL009175|pid:none) Human DNA sequence from clone RP6-... 55 1e-05
AP007159_468(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 55 1e-05
AL596094_6(AL596094|pid:none) Human DNA sequence from clone RP11... 55 1e-05
AF130987_1(AF130987|pid:none) Rattus norvegicus RAB GDP dissocia... 54 2e-05
CR382132_261(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 54 2e-05
AM920437_2340(AM920437|pid:none) Penicillium chrysogenum Wiscons... 54 3e-05
AK021238_1(AK021238|pid:none) Mus musculus 7 days embryo whole b... 53 4e-05
AF144713_1(AF144713|pid:none) Homo sapiens Rab GDP dissociation ... 53 4e-05
FN317439_1(FN317439|pid:none) Schistosoma japonicum isolate Anhu... 52 8e-05
(O60112) RecName: Full=Uncharacterized Rab geranylgeranyltransfe... 51 2e-04
AM494966_214(AM494966|pid:none) Leishmania braziliensis chromoso... 51 2e-04
AX884381_1(AX884381|pid:none) Sequence 244 from Patent EP1033401. 50 3e-04
AK297554_1(AK297554|pid:none) Homo sapiens cDNA FLJ60305 complet... 50 3e-04
CR954215_39(CR954215|pid:none) Ostreococcus tauri strain OTTH059... 47 0.002
AJ000240_1(AJ000240|pid:none) Hordeum vulgare mRNA for expressed... 47 0.003
AJ812003_1(AJ812003|pid:none) Aspergillus niger gdiA gene for pu... 46 0.005
CR954218_209(CR954218|pid:none) Ostreococcus tauri strain OTTH05... 45 0.013
S37423_1(S37423|pid:none) chorioderemia (CHM) gene [human, Genom... 41 0.15
CP000491_95(CP000491|pid:none) Paracoccus denitrificans PD1222 p... 39 0.72
CP000300_1895(CP000300|pid:none) Methanococcoides burtonii DSM 6... 39 0.94
CP000576_1223(CP000576|pid:none) Prochlorococcus marinus str. MI... 39 0.94
CP000698_5(CP000698|pid:none) Geobacter uraniireducens Rf4, comp... 38 1.2
BX294138_90(BX294138|pid:none) Rhodopirellula baltica SH 1 compl... 38 1.6
CP001275_452(CP001275|pid:none) Thermomicrobium roseum DSM 5159,... 37 2.1
BX548174_1281(BX548174|pid:none) Prochlorococcus marinus MED4 co... 37 2.1
AM398681_2218(AM398681|pid:none) Flavobacterium psychrophilum JI... 37 2.7
CP000853_7(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, co... 37 3.6
FB816842_1(FB816842|pid:none) Sequence 36115 from Patent WO20080... 37 3.6
CP000825_1248(CP000825|pid:none) Prochlorococcus marinus str. MI... 36 4.7
CP000962_2484(CP000962|pid:none) Clostridium botulinum A3 str. L... 36 4.7
CP001196_3226(CP001196|pid:none) Oligotropha carboxidovorans OM5... 36 4.7
AY809764_1(AY809764|pid:none) Schistosoma japonicum SJCHGC01439 ... 36 4.7
CP001083_2623(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 36 4.7
BX572596_190(BX572596|pid:none) Rhodopseudomonas palustris CGA00... 36 4.7
CP001344_962(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 36 6.1
AM412317_2501(AM412317|pid:none) Clostridium botulinum A str. AT... 36 6.1
CP001357_1016(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 36 6.1
CP000283_4108(CP000283|pid:none) Rhodopseudomonas palustris BisB... 36 6.1
CP000726_2274(CP000726|pid:none) Clostridium botulinum A str. AT... 36 6.1
(Q54G57) RecName: Full=Activating signal cointegrator 1 complex ... 35 8.0
BA000040_7054(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 8.0
AF503286_1(AF503286|pid:none) Trypanosoma cruzi clone F562 HaeII... 35 8.0
CP000552_1205(CP000552|pid:none) Prochlorococcus marinus str. MI... 35 8.0
CP000939_2421(CP000939|pid:none) Clostridium botulinum B1 str. O... 35 8.0

>AC020580_13(AC020580|pid:none) Arabidopsis thaliana chromosome 3 BAC
F5E6 genomic sequence, complete sequence.
Length = 536

Score = 94.7 bits (234), Expect = 1e-17
Identities = 70/332 (21%), Positives = 146/332 (43%), Gaps = 9/332 (2%)
Frame = +1

Query: 136 LENDKFDCVILGTGLVESLVAGALARAGKQVLHFDKKVIYGGFDSSFTLGQLTKILQESN 315
L+ +D +++GTG+ ES++A A + +G VLH D YG +S +L LT
Sbjct: 10 LDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLT------- 62

Query: 316 INNIIDKNDLVPPYFENVVINKLVKTPSPQPNEEEEDKKSKQDXXXXXXXXXXXXXXXXX 495
+ + N + PP P P+ + D
Sbjct: 63 --SFLHSNSVSPP---------------PSPSSPPLPPSNNHDFISVDLV---------- 95

Query: 496 XXXXXXXXXXXXXXXXXXXXXXXXSTEILQVIDVPLVSDKSLEELGRLFSIDIS-PTLLY 672
+ + +++ + LEE R F++D++ P +++
Sbjct: 96 ------------------------NRSLYSSVEISSFESEILEEHSRRFNVDLAGPRVVF 131

Query: 673 GRGALVKLLISSSASRYLEFKSLDQNYLF-TNGKVHEIPSTKGSIFKDSTFSLKEKRLIM 849
+ L++ S A+ Y+EFKS+D +++ ++G++ +P ++ +IFKD + +L EK +M
Sbjct: 132 CADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLM 191

Query: 850 KFMESIRELKKEGSDLDDAEKEAHFKLSIIELGKQFKSFIDYIKSFKFTQLVESFILYGL 1029
KF + ++ ++ DD+ K+S ++ F+D++ + ++S ILY +
Sbjct: 192 KFFKLVQSHLASSTEKDDS---TTVKISEEDME---SPFVDFLSKMRLPPKIKSIILYAI 245

Query: 1030 SLIHEDLES-------IPLETGIESVFLYTSS 1104
+++ D ++ + + GI+ + LY +S
Sbjct: 246 AMLDYDQDNTETCRHLLKTKEGIDRLALYITS 277

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,128,418,696
Number of extensions: 36253942
Number of successful extensions: 104488
Number of sequences better than 10.0: 166
Number of HSP's gapped: 104331
Number of HSP's successfully gapped: 305
Length of query: 675
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 540
Effective length of database: 614,245,399
Effective search space: 331692515460
Effective search space used: 331692515460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.60 gvh: 0.61 alm: 0.31 top: 0.63 tms: 0.07 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U11962-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0