Contig-U11937-1 |
Contig ID |
Contig-U11937-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
695 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1260591 |
End point |
1259915 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U11937 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.27 |
Homology vs DNA |
Query= Contig-U11937-1 (Contig-U11937-1Q) /CSM_Contig/Contig-U11937-1Q.Seq.d (705 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ370985) Dictyostelium discoideum cDNA clone:ddc56p01, 5' ... 218 4e-71 2 (BJ385806) Dictyostelium discoideum cDNA clone:ddc56p01, 3' ... 250 2e-62 2 (EJ006101) 1091138307032 Global-Ocean-Sampling_GS-26-01-01-1... 44 0.30 2 (EJ017597) 1095439020349 Global-Ocean-Sampling_GS-26-01-01-1... 44 0.34 2 (AC155650) Mus musculus 6 BAC RP24-151E20 (Roswell Park Canc... 48 0.45 1 (BD061520) Genome DNA of symbiotic bacteria of aphid. 48 0.45 1 (AR409405) Sequence 1 from patent US 6632935. 48 0.45 1 (BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 48 0.45 1 (AC159281) Mus musculus BAC clone RP23-321H9 from chromosome... 46 1.8 1 (AC122462) Mus musculus BAC clone RP24-294G11 from 3, comple... 46 1.8 1 (AC217914) Solanum lycopersicum chromosome 1 clone C01HBa003... 46 1.8 1 (CT826384) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.8 1 (AC230324) Bos taurus clone CH240-512J24, WORKING DRAFT SEQU... 46 1.8 1 (AC175849) Strongylocentrotus purpuratus clone R3-15L14, WOR... 46 1.8 1 (BH430841) BOHFK08TR BOHF Brassica oleracea genomic clone BO... 46 1.8 1 (EJ717452) 1092959430043 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.8 1 (EE146927) SiJWH08BBD2 Lausanne fire ant library Solenopsis ... 46 1.8 1 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 1.8 1 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 46 1.8 1 (DQ292702) Nascus paulliniae voucher 99-SRNP-15218 cytochrom... 40 2.8 2 (AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 44 3.0 4 (AC188385) Callithrix jacchus BAC clone CH259-87H12 from chr... 42 3.1 2 (DQ292701) Nascus paulliniae voucher 95-SRNP-9964 cytochrome... 40 3.1 2 (DQ292712) Nascus paulliniae voucher 04-SRNP-14706 cytochrom... 40 3.3 2 (DQ292711) Nascus paulliniae voucher 04-SRNP-34021 cytochrom... 40 3.3 2 (DQ292710) Nascus paulliniae voucher 04-SRNP-34682 cytochrom... 40 3.3 2 (DQ292709) Nascus paulliniae voucher 04-SRNP-14655 cytochrom... 40 3.3 2 (DQ292708) Nascus paulliniae voucher 04-SRNP-55249 cytochrom... 40 3.3 2 (DQ292707) Nascus paulliniae voucher 04-SRNP-55654 cytochrom... 40 3.3 2 (DQ292706) Nascus paulliniae voucher 04-SRNP-55794 cytochrom... 40 3.3 2 (DQ292705) Nascus paulliniae voucher 04-SRNP-55367 cytochrom... 40 3.3 2 (DQ292704) Nascus paulliniae voucher 04-SRNP-55964 cytochrom... 40 3.3 2 (DQ292703) Nascus paulliniae voucher 02-SRNP-6701 cytochrome... 40 3.3 2 (AC023825) Homo sapiens chromosome 16 clone RP11-322D14, com... 32 3.4 2 (AC020769) Homo sapiens clone RP11-11M3, WORKING DRAFT SEQUE... 32 3.4 2 (AC178935) Strongylocentrotus purpuratus clone R3-3115P14, W... 34 3.5 2 (AC203539) Glycine tomentella clone gtd1-128d9, WORKING DRAF... 36 4.3 4 (EK516147) 1095515499728 Global-Ocean-Sampling_GS-32-01-01-1... 40 4.4 2 (EK501284) 1095505214798 Global-Ocean-Sampling_GS-32-01-01-1... 40 4.5 2 (BH700402) BOHZW19TF BO_2_3_KB Brassica oleracea genomic clo... 34 4.6 2 (BH944445) obu89f02.g1 B.oleracea002 Brassica oleracea genom... 34 4.6 2 (DQ338584) Magneuptychia n. sp. 4 CP-2006 cytochrome c oxida... 40 6.8 2 (CT573050) Zebrafish DNA sequence from clone CH211-81A6 in l... 44 7.0 1 (AC162900) Mus musculus BAC clone RP23-416N10 from chromosom... 44 7.0 1 (AC101778) Mus musculus chromosome 1, clone RP24-125B8, comp... 44 7.0 1 (AC198188) MACACA MULATTA BAC clone CH250-392N11 from chromo... 44 7.0 1 (AC149044) Pan troglodytes chromosome X clone PTB-089E19 map... 44 7.0 1 (AP009393) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 7.0 1 (AP009297) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 7.0 1 (AP007151) Aspergillus oryzae RIB40 genomic DNA, SC005. 44 7.0 1 (AP006374) Lotus japonicus genomic DNA, chromosome 5, clone:... 44 7.0 1 (AM488737) Vitis vinifera contig VV78X107684.13, whole genom... 44 7.0 1 (EA062083) Sequence 36 from patent US 7169970. 44 7.0 1 (EA062079) Sequence 32 from patent US 7169970. 44 7.0 1 (DD058661) HERBICIDE RESISTANT PLANTS. 44 7.0 1 (DD058657) HERBICIDE RESISTANT PLANTS. 44 7.0 1 (AX405122) Sequence 36 from Patent WO0226995. 44 7.0 1 (AX405118) Sequence 32 from Patent WO0226995. 44 7.0 1 (AL139353) Human chromosome 14 DNA sequence BAC R-176H8 of l... 44 7.0 1 (AL137016) Human DNA sequence from clone RP4-595A18 on chrom... 44 7.0 1 (AL136418) Human chromosome 14 DNA sequence BAC R-596D21 of ... 44 7.0 1 (AC131420) Rattus norvegicus clone CH230-97B20, WORKING DRAF... 44 7.0 1 (AC126871) Rattus norvegicus clone CH230-40L18, WORKING DRAF... 44 7.0 1 (AC122964) Rattus norvegicus clone CH230-33K9, *** SEQUENCIN... 44 7.0 1 (AC118142) Rattus norvegicus clone CH230-344H15, *** SEQUENC... 44 7.0 1 (AC115245) Rattus norvegicus clone CH230-257P8, *** SEQUENCI... 44 7.0 1 (AC106986) Rattus norvegicus clone CH230-221F4, *** SEQUENCI... 44 7.0 1 (AC098751) Rattus norvegicus clone CH230-27K19, *** SEQUENCI... 44 7.0 1 (AC093945) Rattus norvegicus clone CH230-143O3, WORKING DRAF... 44 7.0 1 (AC092847) Homo sapiens chromosome UNK clone RP11-657C9, WOR... 44 7.0 1 (AP008116) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 7.0 1 (AL139054) Human chromosome 14 DNA sequence *** IN PROGRESS ... 44 7.0 1 (AC203479) Microcebus murinus clone CH257-13H6, WORKING DRAF... 44 7.0 1 (AC203111) Microcebus murinus clone CH257-396B7, WORKING DRA... 44 7.0 1 (AC201461) Strongylocentrotus purpuratus clone R3-3040D21, W... 44 7.0 1 (AC184637) Strongylocentrotus purpuratus clone R3-1005M13, W... 44 7.0 1 (ET994648) CHO_OF260xn03f2.ab1 CHO_OF Nicotiana tabacum geno... 44 7.0 1 (ET966107) CHO_OF424xd20f1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.0 1 (EK356822) 1095468598868 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.0 1 (EK125454) 1092976900333 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.0 1 (EJ990105) 1093023042263 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.0 1 (EJ835585) 1093017626353 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.0 1 (EJ449440) 1093015402051 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.0 1 (EJ272134) 1095353021984 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.0 1 (EJ086432) 1095460109858 Global-Ocean-Sampling_GS-26-01-01-1... 44 7.0 1 (ED778934) GM_WBb0157C09.r GM_WBb Glycine max genomic clone ... 44 7.0 1 (ED477693) AUAC-aaf36f09.g1 Ascaris suum whole genome shotgu... 44 7.0 1 (ED263672) AUAC-aae12d06.g1 Ascaris suum whole genome shotgu... 44 7.0 1 (AG970837) Drosophila simulans DNA, clone: DSM1-009J15.R.fa,... 44 7.0 1 (AG970768) Drosophila simulans DNA, clone: DSM1-009H16.R.fa,... 44 7.0 1 (DE864251) Macropus eugenii DNA, BAC clone: MEB1-031O15_R, 3... 44 7.0 1 (CZ540183) SRAA-aad30c01.b1 Strongyloides ratti whole genome... 44 7.0 1 (AG626326) Macaca fuscata fuscata DNA, clone: MSB2-022N09_R,... 44 7.0 1 (CL141799) ISB1-119G10_T7.1 ISB1 Xenopus (Silurana) tropical... 44 7.0 1 (EB379170) nbc45e10.y1 Rabbit trigeminal nerve. Unnormalized... 44 7.0 1 (DW347762) PP_LEc0023O02f Peach shoot Prunus persica cDNA cl... 44 7.0 1 (DW347532) PP_LEc0022B13f Peach shoot Prunus persica cDNA cl... 44 7.0 1 (BJ061762) Xenopus laevis cDNA clone:XL073p14, 5' end, singl... 44 7.0 1 (BG726324) sae08h02.y1 Gm-c1055 Glycine max cDNA clone GENOM... 44 7.0 1 (AW158713) za45d03.x1 Xenopus EST library Xenopus laevis cDN... 44 7.0 1
>(BJ370985) Dictyostelium discoideum cDNA clone:ddc56p01, 5' end, single read. Length = 373
Score = 218 bits (110), Expect(2) = 4e-71 Identities = 110/110 (100%) Strand = Plus / Plus
Query: 1 attactatttaaaactataaaatcaaattatacaagtagtataaattgctttaattagct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attactatttaaaactataaaatcaaattatacaagtagtataaattgctttaattagct 60
Query: 61 attagcaatatatttttatcatttaattgattgtattctagttttaaccg 110 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attagcaatatatttttatcatttaattgattgtattctagttttaaccg 110
Score = 87.7 bits (44), Expect(2) = 4e-71 Identities = 44/44 (100%) Strand = Plus / Plus
Query: 320 cgccaattgacaatggttgaaattaataaaattaaatttttaat 363 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 cgccaattgacaatggttgaaattaataaaattaaatttttaat 363
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 368,475,093 Number of extensions: 26492874 Number of successful extensions: 2630878 Number of sequences better than 10.0: 105 Length of query: 705 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 681 Effective length of database: 97,308,875,965 Effective search space: 66267344532165 Effective search space used: 66267344532165 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |