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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11931-1
Contig ID Contig-U11931-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Contig-U11931-1Q.Seq.d
ATAAAAAAATAAATAAAAATAAAAAGATGAGTACTTTAGAACAATATCTT
AAAGTTATTGGATTAGAATCTTATAAAGATTTAATGATTGATATTGGATA
TGACGATCCAGAATTAATTTCAGAATTAACAGAAGATGATTTGGTTGCAA
TTAATGTAAAAAGAGGGCATGCAAAACGTGCATTTTTAAAAGCTAAAGAA
TTGGCAGGTAAACAAAATGAAAGTTCAGCTAAATCACCAGATGTTTCATC
ATCAACAACAACAGCATCAACATCATCATCATCATCATCATCAACATCAG
CACCAGTTGAAGAAAAGAAAAGAACAACAACAATTAGTATTGGTAAAAAA
GGTGAAGATAATGATGATGATGATGAAGAAGAAGAGAAAGCTTCATATAG
TGGTCCAATTTTACAAAGTAAAGTATTGAATGAAGGTTTCATTCAAAAGA
AAGGTAATGAAGGTTTCTTTGGTTCAAAGATGTTTCAAAAGAGATATTTT
AAAATTTATGAAGAAGGAAGATTGGCATATTTTAAGAATCAAAATGATGT
TTCACCAATTGGTGTTATCGAGATGAAAGGTGCATTGGCATGCGAAGATA
TGGAGGGAAAGCCACAAGGATTTAAATTATCCATGAAAACAAGCGCACGT
GTTTATTGGTTAGTTGCAATGACCAATGACCAAAAACAAAAGTGGGTATC
CGTTATCAAACAGCAAATCACCCCACCAGCCGTACCAAAACCA-------
---GTGGATTCGGTGGTGATTCAGAAACACCAGTACCAGAGAAGCGTATC
TATCGTTATGAAGTCCCTCATAAAACTACACTCAGAGATGGCGAATCTAA
ACAAATCTGTTTTGTCAGTACTAAATTACCAGTAAAGTCTTTTGATTTCA
TCACTTTTGCAACACCAAATTATCAAAAGTATGCTATGATCGGTAAAGAT
CAAGGTGCAAATGCTGCCTCTTCAGTTAATTCATCGGGTTACTTTCACTT
GGAATTTACCATACTCAATTCCAGCTGGTCAAATGAAATTACAAAGACAA
TTAAAAGATAAATTTGGTTCCGATATTGTAAATACTTTTGATATCGCTCA
TTATAACCCAACTGATATCATTTCATTACCACTTCAACCATTGGGTAAAG
TTTCTTCAACTCGTACCCAAACTGGTTTTAACTTTGATCTCAATGGTTTA
TTCATTGTTGAAACCTATGAAATTCGTGTAAACAATGGTCGTGAAGAACC
AATTAAAATCACTGTTGAAGAATCTTTATACCGTTCAACTTTCTGGGAAA
TCACTAGTAGTAGTCATAAATTCACTCCACATCCAACTCATTCTCGTAAA
ATTCATTGGCAATTATCAATTCCACCACTTGATGGTGAAGTAATTAAATA
TTCTGTATTTTATAGTGGTTTAAATTTACCAGCAAGTAGACTGCTAAAAA
AGATGAAAAAACTAATTATTTTAATAAATAAATATAAATATAAAAATAAA
TAAATAAANAATAATAAAAAAAAAAAAAAAA
Gap gap included
Contig length 1521
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 624519
End point 626041
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 9
Link to clone list U11931
List of clone(s) 

est1=VHL194F,1,628
est2=CHQ790F,102,743
est3=CHQ790Z,744,1479
est4=VHL194Z,849,1525
est5=CHO790Z,852,1144
est6=VHH490Z,887,1404
est7=VHO703Z,909,1409
est8=VHG182Z,916,1420
est9=VHG274Z,922,1432
Translated Amino Acid sequence 
KKINKNKKMSTLEQYLKVIGLESYKDLMIDIGYDDPELISELTEDDLVAINVKRGHAKRA
FLKAKELAGKQNESSAKSPDVSSSTTTASTSSSSSSSTSAPVEEKKRTTTISIGKKGEDN
DDDDEEEEKASYSGPILQSKVLNEGFIQKKGNEGFFGSKMFQKRYFKIYEEGRLAYFKNQ
NDVSPIGVIEMKGALACEDMEGKPQGFKLSMKTSARVYWLVAMTNDQKQKWVSVIKQQIT
PPAVPKP---

---GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQ
KYAMIGKDQGANAASSVNSSGYFHLEFTILNSSWSNEITKTIKR*iwfryckyf*yrsl*
pn*yhfittstig*sffnsypnwf*l*sqwfihc*nl*nsckqws*rtn*nhc*rifipf
nflgnh***s*ihstsnsfs*nslaiinstt*w*sn*ifcil*wfkftsk*takkdektn
yfnk*i*i*k*inkx**kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ikk*ikikr*vl*nnilklld*nliki**lildmtiqn*fqn*qkmiwlqlm*kegmqnv
hf*klknwqvnkmkvqlnhqmfhhqqqqhqhhhhhhhqhqhqlkkrkeqqqlvlvkkvki
mmmmmkkkrklhivvqfykvky*mkvsfkrkvmkvslvqrcfkrdilkfmkkedwhilri
kmmfhqlvlsr*kvhwhakiwreshkdlnyp*kqahvfig*lq*pmtknksgyplsnsks
phqpyqn---

---vdsvviqkhqyqrsvsivmksliklhsemanlnksvlsvlnyq*sllissllqhqii
ksml*svkikvqmlplqlihrvtftwnlpysipagqmklqrqlkdkfgsdivntfdiahy
nptdiislplqplgkvsstrtqtgfnfdlnglfivetyeirvnngreepikitveeslyr
stfweitssshkftphpthsrkihwqlsippldgevikysvfysglnlpasrllkkmkkl
iilinkykyknk*ixnnkkkkk

Frame B:
*knk*k*kdeyfrtis*sywiril*rfnd*ywi*rsrinfrinrr*fgcn*ckkracktc
ifks*rigr*tk*kfs*itrcfiinnnsiniiiiiiinists*rkeknnnn*yw*kr*r*
*****rrresfi*wsnftk*sie*rfhsker**rflwfkdvskeif*nl*rrkigif*es
k*cftnwcyrdercigmrryggkatri*iihenkrtcllvscndq*pktkvgiryqtanh
ptsrtkt---

---wirw*frntstreaylsl*sps*nytqrwri*tnlfcqy*itskvf*fhhfcntkls
kvcydr*rsrckcclfs*figllslgiyhtqfqlvk*nykdn*kinlvpil*illislii
tqlisfhyhfnhwvkflqlvpklvltlismvysllkpmkfv*tmvvknqlksllknlytv
qlsgkslvvvinslhiqlilvkfignyqfhhlmvk*lnilyfivv*iyqqvdc*kr*kn*
lf**ininikink*xiikkkkk

Frame C:
KKINKNKKMSTLEQYLKVIGLESYKDLMIDIGYDDPELISELTEDDLVAINVKRGHAKRA
FLKAKELAGKQNESSAKSPDVSSSTTTASTSSSSSSSTSAPVEEKKRTTTISIGKKGEDN
DDDDEEEEKASYSGPILQSKVLNEGFIQKKGNEGFFGSKMFQKRYFKIYEEGRLAYFKNQ
NDVSPIGVIEMKGALACEDMEGKPQGFKLSMKTSARVYWLVAMTNDQKQKWVSVIKQQIT
PPAVPKP---

---GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQ
KYAMIGKDQGANAASSVNSSGYFHLEFTILNSSWSNEITKTIKR*iwfryckyf*yrsl*
pn*yhfittstig*sffnsypnwf*l*sqwfihc*nl*nsckqws*rtn*nhc*rifipf
nflgnh***s*ihstsnsfs*nslaiinstt*w*sn*ifcil*wfkftsk*takkdektn
yfnk*i*i*k*inkx**kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11931-1 (Contig-U11931-1Q)
/CSM_Contig/Contig-U11931-1Q.Seq.d
         (1531 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Conti...  2210  0.0
Contig-U14570-1 (Contig-U14570-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U11339-1 (Contig-U11339-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U03565-1 (Contig-U03565-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U05843-1 (Contig-U05843-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U05003-1 (Contig-U05003-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U01385-1 (Contig-U01385-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14703-1 (Contig-U14703-1Q) /CSM_Contig/Conti...    44  4e-04

>Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Contig-U11931-1Q.Seq.d
          Length = 1531

 Score = 2210 bits (1115), Expect = 0.0
 Identities = 1145/1145 (100%)
 Strand = Plus / Plus

                                                                        
Query: 300  gcaccagttgaagaaaagaaaagaacaacaacaattagtattggtaaaaaaggtgaagat 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  gcaccagttgaagaaaagaaaagaacaacaacaattagtattggtaaaaaaggtgaagat 359

                                                                        
Query: 360  aatgatgatgatgatgaagaagaagagaaagcttcatatagtggtccaattttacaaagt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  aatgatgatgatgatgaagaagaagagaaagcttcatatagtggtccaattttacaaagt 419

                                                                        
Query: 420  aaagtattgaatgaaggtttcattcaaaagaaaggtaatgaaggtttctttggttcaaag 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  aaagtattgaatgaaggtttcattcaaaagaaaggtaatgaaggtttctttggttcaaag 479

                                                                        
Query: 480  atgtttcaaaagagatattttaaaatttatgaagaaggaagattggcatattttaagaat 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  atgtttcaaaagagatattttaaaatttatgaagaaggaagattggcatattttaagaat 539

                                                                        
Query: 540  caaaatgatgtttcaccaattggtgttatcgagatgaaaggtgcattggcatgcgaagat 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  caaaatgatgtttcaccaattggtgttatcgagatgaaaggtgcattggcatgcgaagat 599

                                                                        
Query: 600  atggagggaaagccacaaggatttaaattatccatgaaaacaagcgcacgtgtttattgg 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  atggagggaaagccacaaggatttaaattatccatgaaaacaagcgcacgtgtttattgg 659

                                                                        
Query: 660  ttagttgcaatgaccaatgaccaaaaacaaaagtgggtatccgttatcaaacagcaaatc 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  ttagttgcaatgaccaatgaccaaaaacaaaagtgggtatccgttatcaaacagcaaatc 719

                                                                        
Query: 720  accccaccagccgtaccaaaaccannnnnnnnnngtggattcggtggtgattcagaaaca 779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  accccaccagccgtaccaaaaccannnnnnnnnngtggattcggtggtgattcagaaaca 779

                                                                        
Query: 780  ccagtaccagagaagcgtatctatcgttatgaagtccctcataaaactacactcagagat 839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  ccagtaccagagaagcgtatctatcgttatgaagtccctcataaaactacactcagagat 839

                                                                        
Query: 840  ggcgaatctaaacaaatctgttttgtcagtactaaattaccagtaaagtcttttgatttc 899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  ggcgaatctaaacaaatctgttttgtcagtactaaattaccagtaaagtcttttgatttc 899

                                                                        
Query: 900  atcacttttgcaacaccaaattatcaaaagtatgctatgatcggtaaagatcaaggtgca 959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  atcacttttgcaacaccaaattatcaaaagtatgctatgatcggtaaagatcaaggtgca 959

                                                                        
Query: 960  aatgctgcctcttcagttaattcatcgggttactttcacttggaatttaccatactcaat 1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  aatgctgcctcttcagttaattcatcgggttactttcacttggaatttaccatactcaat 1019

                                                                        
Query: 1020 tccagctggtcaaatgaaattacaaagacaattaaaagataaatttggttccgatattgt 1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 tccagctggtcaaatgaaattacaaagacaattaaaagataaatttggttccgatattgt 1079

                                                                        
Query: 1080 aaatacttttgatatcgctcattataacccaactgatatcatttcattaccacttcaacc 1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 aaatacttttgatatcgctcattataacccaactgatatcatttcattaccacttcaacc 1139

                                                                        
Query: 1140 attgggtaaagtttcttcaactcgtacccaaactggttttaactttgatctcaatggttt 1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 attgggtaaagtttcttcaactcgtacccaaactggttttaactttgatctcaatggttt 1199

                                                                        
Query: 1200 attcattgttgaaacctatgaaattcgtgtaaacaatggtcgtgaagaaccaattaaaat 1259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 attcattgttgaaacctatgaaattcgtgtaaacaatggtcgtgaagaaccaattaaaat 1259

                                                                        
Query: 1260 cactgttgaagaatctttataccgttcaactttctgggaaatcactagtagtagtcataa 1319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 cactgttgaagaatctttataccgttcaactttctgggaaatcactagtagtagtcataa 1319

                                                                        
Query: 1320 attcactccacatccaactcattctcgtaaaattcattggcaattatcaattccaccact 1379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 attcactccacatccaactcattctcgtaaaattcattggcaattatcaattccaccact 1379

                                                                        
Query: 1380 tgatggtgaagtaattaaatattctgtattttatagtggtttaaatttaccagcaagtag 1439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 tgatggtgaagtaattaaatattctgtattttatagtggtttaaatttaccagcaagtag 1439

                 
Query: 1440 actgc 1444
            |||||
Sbjct: 1440 actgc 1444


 Score =  442 bits (223), Expect = e-124
 Identities = 223/223 (100%)
 Strand = Plus / Plus

                                                                       
Query: 26  gatgagtactttagaacaatatcttaaagttattggattagaatcttataaagatttaat 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26  gatgagtactttagaacaatatcttaaagttattggattagaatcttataaagatttaat 85

                                                                       
Query: 86  gattgatattggatatgacgatccagaattaatttcagaattaacagaagatgatttggt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  gattgatattggatatgacgatccagaattaatttcagaattaacagaagatgatttggt 145

                                                                       
Query: 146 tgcaattaatgtaaaaagagggcatgcaaaacgtgcatttttaaaagctaaagaattggc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgcaattaatgtaaaaagagggcatgcaaaacgtgcatttttaaaagctaaagaattggc 205

                                                      
Query: 206 aggtaaacaaaatgaaagttcagctaaatcaccagatgtttca 248
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aggtaaacaaaatgaaagttcagctaaatcaccagatgtttca 248


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 361 atgatgatgatgatga 376
           ||||||||||||||||
Sbjct: 291 atgatgatgatgatga 276


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 361 atgatgatgatgatga 376
           ||||||||||||||||
Sbjct: 288 atgatgatgatgatga 273


 Score = 30.2 bits (15), Expect = 6.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 361 atgatgatgatgatg 375
           |||||||||||||||
Sbjct: 285 atgatgatgatgatg 271


 Score = 30.2 bits (15), Expect = 6.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 362 tgatgatgatgatga 376
           |||||||||||||||
Sbjct: 293 tgatgatgatgatga 279


>Contig-U14570-1 (Contig-U14570-1Q) /CSM_Contig/Contig-U14570-1Q.Seq.d
          Length = 704

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 361 atgatgatgatgatgaagaagaaga 385
           |||||||||||||||||||||||||
Sbjct: 462 atgatgatgatgatgaagaagaaga 486


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 361 atgatgatgatgatgaagaagaaga 385
           |||||||||||||||| ||||||||
Sbjct: 459 atgatgatgatgatgatgaagaaga 483


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 363 gatgatgatgatgaagaagaa 383
           |||||||||||||||||||||
Sbjct: 485 gatgatgatgatgaagaagaa 505


 Score = 34.2 bits (17), Expect = 0.43
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 361 atgatgatgatgatgaagaagaaga 385
           |||||||||||||||| || |||||
Sbjct: 456 atgatgatgatgatgatgatgaaga 480


 Score = 34.2 bits (17), Expect = 0.43
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 356 agataatgatgatgatgatga 376
           |||| ||||||||||||||||
Sbjct: 388 agattatgatgatgatgatga 408


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 366 gatgatgatgaagaagaaga 385
           ||||||||||| ||||||||
Sbjct: 485 gatgatgatgatgaagaaga 504


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 361 atgatgatgatgatga 376
           ||||||||||||||||
Sbjct: 396 atgatgatgatgatga 411


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 361 atgatgatgatgatgaagaa 380
           ||||||||||||| ||||||
Sbjct: 486 atgatgatgatgaagaagaa 505


>Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Contig-U12316-1Q.Seq.d
          Length = 1248

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 353  tgaagataatgatgatgatgatgaagaagaaga 385
            |||||| ||| ||||||||||||||||||||||
Sbjct: 1040 tgaagaaaattatgatgatgatgaagaagaaga 1072


 Score = 38.2 bits (19), Expect = 0.027
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 353  tgaagataatgatgatgatgatgaaga 379
            ||||||| ||||||| |||||||||||
Sbjct: 1001 tgaagatgatgatgaagatgatgaaga 1027


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 363  gatgatgatgatgaagaaga 382
            |||||||| |||||||||||
Sbjct: 1071 gatgatgaagatgaagaaga 1090


 Score = 32.2 bits (16), Expect = 1.7
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 361  atgatgatgatgatgaagaa 380
            ||||||| ||||||||||||
Sbjct: 1027 atgatgaagatgatgaagaa 1046


 Score = 30.2 bits (15), Expect = 6.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 361  atgatgatgatgatgaaga 379
            ||||||| |||||||||||
Sbjct: 1018 atgatgaagatgatgaaga 1036


 Score = 30.2 bits (15), Expect = 6.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 361  atgatgatgatgatgaaga 379
            |||| ||||||||||||||
Sbjct: 1000 atgaagatgatgatgaaga 1018


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,479
Number of Sequences: 6905
Number of extensions: 28479
Number of successful extensions: 4379
Number of sequences better than 10.0: 656
length of query: 1531
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1515
effective length of database: 5,564,391
effective search space: 8430052365
effective search space used: 8430052365
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Contig-U11931-1Q.Seq.d
         (1531 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ441139) Dictyostelium discoideum cDNA clone:ddv45d24, 3' ...  1027   0.0    1
(BJ385678) Dictyostelium discoideum cDNA clone:ddc55d23, 3' ...   908   0.0    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...   896   0.0    2
(BJ443721) Dictyostelium discoideum cDNA clone:ddv53k23, 3' ...   896   0.0    3
(BJ370875) Dictyostelium discoideum cDNA clone:ddc55d23, 5' ...   880   0.0    2
(BJ424879) Dictyostelium discoideum cDNA clone:ddv53k23, 5' ...   652   0.0    2
(BJ440459) Dictyostelium discoideum cDNA clone:ddv43c20, 3' ...   896   0.0    2
(BJ440460) Dictyostelium discoideum cDNA clone:ddv43c21, 3' ...   878   0.0    2
(BJ445612) Dictyostelium discoideum cDNA clone:ddv60f01, 3' ...   858   0.0    2
(BJ385090) Dictyostelium discoideum cDNA clone:ddc51d23, 3' ...   569   e-157  1
(ER973168) AF__Bc0067M01r AF__Bc Aquilegia formosa genomic, ...    66   4e-06  1
(EH010081) USDA-FP_183215 Lysiphlebus testaceipes adult whol...    64   2e-05  1
(DV605564) EST1208560 Glossina morsitans morsitans Fat body ...    64   2e-05  1
(DV605563) EST1208559 Glossina morsitans morsitans Fat body ...    64   2e-05  1
(AY063908) Arabidopsis thaliana unknown protein (At3g18390) ...    60   3e-04  1
(AB026658) Arabidopsis thaliana genomic DNA, chromosome 3, P...    60   3e-04  1
(EL298884) EB3RODY02F8WL2 8-day Arabidopsis seedlings, aeria...    60   3e-04  1
(EL188935) EB3RODY01CS8MU 8-day Arabidopsis seedlings, aeria...    60   3e-04  1
(AV794049) Arabidopsis thaliana cDNA clone:RAFL08-11-F05, 3'...    60   3e-04  1
(DY943489) CHPY11374.b1_K12.ab1 CHP(XYZ) plains sunflower He...    60   3e-04  1
(DR383748) 13814031 CERES-AL46 Arabidopsis thaliana cDNA clo...    60   3e-04  1
(DK438172) Drosophila simulans mRNA, adult full-length cDNA ...    60   3e-04  1
(AM162016) Pisum sativum EST, clone RE01_K04.                      60   3e-04  1
(FG228861) pvreabc010002_B18_M13rev_phred13_vc root hairs of...    60   3e-04  1
(EY649465) CAWW9948.fwd CAWW Capitella sp. I ECS-2004 Subtra...    60   3e-04  1
(EY649464) CAWW9948.rev CAWW Capitella sp. I ECS-2004 Subtra...    60   3e-04  1
(BM171128) EST573651 PyBS Plasmodium yoelii yoelii cDNA clon...    58   5e-04  2
(AL844507) Plasmodium falciparum chromosome 8.                     46   7e-04  2
(BX005073) Zebrafish DNA sequence from clone CH211-129N18.         50   8e-04  2
(AC179948) Strongylocentrotus purpuratus clone R3-20P18, WOR...    48   8e-04  2
(AC177250) Strongylocentrotus purpuratus clone R3-43F13, WOR...    48   8e-04  2
(FI048569) CHO_OF6492xn17f1.ab1 CHO_OF6 Nicotiana tabacum ge...    52   8e-04  2
(AC136016) Rattus norvegicus clone CH230-369L13, WORKING DRA...    58   0.001  1
(AC107087) Rattus norvegicus clone CH230-148A13, WORKING DRA...    58   0.001  1
(AC180259) Strongylocentrotus purpuratus clone R3-31G19, WOR...    58   0.001  1
(AC179878) Strongylocentrotus purpuratus clone R3-1006N14, W...    58   0.001  1
(AC179740) Strongylocentrotus purpuratus clone R3-1018H24, W...    58   0.001  1
(AC179474) Strongylocentrotus purpuratus clone R3-1036A16, W...    58   0.001  1
(AC176467) Strongylocentrotus purpuratus clone R3-3070C4, WO...    58   0.001  1
(AC176258) Strongylocentrotus purpuratus clone R3-3060M15, W...    58   0.001  1
(EL706783) CBSU5251.fwd NICHD_XGC_tropLimb_m Xenopus (Silura...    58   0.001  1
(EB715581) UN-177 Melon phloem library UN Cucumis melo cDNA ...    58   0.001  1
(DT089929) JGI_ANNK2663.fwd ANNK Pimephales promelas Whole (...    58   0.001  1
(DR919735) EST1111274 Aquilegia cDNA library Aquilegia formo...    58   0.001  1
(EY311375) CAWX23435.fwd CAWX Helobdella robusta Primary Ear...    58   0.001  1
(FG199462) AGN_PNL228df1_c2.trimmed.seq AGN_PNL Nicotiana ta...    52   0.001  2
(CK291354) EST754068 Nicotiana benthamiana mixed tissue cDNA...    52   0.002  2
(ES543866) Kr_K07_02J01_attB1_seq K07 Euphausia superba cDNA...    54   0.002  2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    40   0.003  2
(AC123312) Rattus norvegicus clone CH230-114H4, *** SEQUENCI...    40   0.003  2
(CU467817) Mouse DNA sequence from clone DN-109I8 on chromos...    56   0.004  1
(CU367883) Mouse DNA sequence from clone CH29-73A3 on chromo...    56   0.004  1
(CR974451) Mouse DNA sequence from clone RP24-180B11 on chro...    56   0.004  1
(DQ064595) Candida tropicalis glycerol-3-phosphate dehydroge...    56   0.004  1
(CT834196) Oryza sativa (indica cultivar-group) cDNA clone:O...    56   0.004  1
(AC225119) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    56   0.004  1
(AC225041) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    56   0.004  1
(AC131169) Rattus norvegicus clone CH230-82I19, *** SEQUENCI...    56   0.004  1
(AC125763) Rattus norvegicus clone CH230-109C20, *** SEQUENC...    56   0.004  1
(AC112329) Rattus norvegicus clone CH230-184F19, *** SEQUENC...    56   0.004  1
(CU606913) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    56   0.004  1
(AC074150) Mus musculus clone RP23-128D3, WORKING DRAFT SEQU...    56   0.004  1
(AC176471) Strongylocentrotus purpuratus clone R3-3070D3, WO...    56   0.004  1
(AC176444) Strongylocentrotus purpuratus clone R3-3068D20, W...    56   0.004  1
(AC168483) Strongylocentrotus purpuratus clone R3-3117L14, W...    56   0.004  1
(AZ638603) 1M0498O03R Mouse 10kb plasmid UUGC1M library Mus ...    56   0.004  1
(ER972716) AF__Bc0064B05f AF__Bc Aquilegia formosa genomic, ...    56   0.004  1
(CU754611) A BAC library has been constructed from PN40024 g...    56   0.004  1
(CE032657) tigr-gss-dog-17000347944310 Dog Library Canis lup...    56   0.004  1
(BZ002213) oei35a05.g1 B.oleracea002 Brassica oleracea genom...    56   0.004  1
(BH594948) BOHPV07TF BOHP Brassica oleracea genomic clone BO...    56   0.004  1
(EE562658) BNZB_UP_085_D09_03JUN2004_073 Brassica napus BNZB...    56   0.004  1
(DV430174) NADDS66TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV430173) NADDS66TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV429163) NADDZ20TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV429162) NADDZ20TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV428044) NADXO23TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV428043) NADXO23TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV425085) NADYA16TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV421698) NADYA16TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV414124) NADWM92TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV414123) NADWM92TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV413410) NADW979TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV413409) NADW979TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV381667) NADAT10TR Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV381665) NADAT10TF Aedes aegypti infected with Dengue viru...    56   0.004  1
(DV357429) NABZ485TF Aedes aegypti infected with Plasmodium ...    56   0.004  1
(DV336644) NABV814TO Aedes aegypti infected with Plasmodium ...    56   0.004  1
(DV336643) NABV814TF Aedes aegypti infected with Plasmodium ...    56   0.004  1
(CT820751) Paramecium tetraurelia 5-PRIME EST from clone LK0...    56   0.004  1
(CR284542) Oryza sativa  cDNA clone:y742b06p3.                     56   0.004  1
(AM208904) Paracentrotus lividus EST, clone MPMGp1174J0516Q,...    56   0.004  1
(CI230915) Oryza sativa Japonica Group cDNA, clone: 041-M031...    56   0.004  1
(CI181090) Oryza sativa Japonica Group cDNA, clone: 034-M091...    56   0.004  1
(CI180562) Oryza sativa Japonica Group cDNA, clone: 034-M083...    56   0.004  1
(BX564550) Glossina morsitans morsitans (Tseatse fly) EST fr...    56   0.004  1
(BQ586249) E012392-024-013-C09-SP6 MPIZ-ADIS-024-leaf Beta v...    56   0.004  1
(BP608678) Arabidopsis thaliana cDNA clone:RAFL16-79-H08, 3'...    56   0.004  1
(FE697149) Pv021B_M13F_G10.ab1 Phaseolus vulgaris cv Early g...    56   0.004  1
(FE697148) Pv036C_M13R_H04.ab1 Phaseolus vulgaris cv Early g...    56   0.004  1

>(BJ441139) Dictyostelium discoideum cDNA clone:ddv45d24, 3' end,
            single read.
          Length = 518

 Score = 1027 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Minus


Query: 897  ttcatcacttttgcaacaccaaattatcaaaagtatgctatgatcggtaaagatcaaggt 956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  ttcatcacttttgcaacaccaaattatcaaaagtatgctatgatcggtaaagatcaaggt 459


Query: 957  gcaaatgctgcctcttcagttaattcatcgggttactttcacttggaatttaccatactc 1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  gcaaatgctgcctcttcagttaattcatcgggttactttcacttggaatttaccatactc 399


Query: 1017 aattccagctggtcaaatgaaattacaaagacaattaaaagataaatttggttccgatat 1076
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  aattccagctggtcaaatgaaattacaaagacaattaaaagataaatttggttccgatat 339


Query: 1077 tgtaaatacttttgatatcgctcattataacccaactgatatcatttcattaccacttca 1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338  tgtaaatacttttgatatcgctcattataacccaactgatatcatttcattaccacttca 279


Query: 1137 accattgggtaaagtttcttcaactcgtacccaaactggttttaactttgatctcaatgg 1196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278  accattgggtaaagtttcttcaactcgtacccaaactggttttaactttgatctcaatgg 219


Query: 1197 tttattcattgttgaaacctatgaaattcgtgtaaacaatggtcgtgaagaaccaattaa 1256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218  tttattcattgttgaaacctatgaaattcgtgtaaacaatggtcgtgaagaaccaattaa 159


Query: 1257 aatcactgttgaagaatctttataccgttcaactttctgggaaatcactagtagtagtca 1316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158  aatcactgttgaagaatctttataccgttcaactttctgggaaatcactagtagtagtca 99


Query: 1317 taaattcactccacatccaactcattctcgtaaaattcattggcaattatcaattccacc 1376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98   taaattcactccacatccaactcattctcgtaaaattcattggcaattatcaattccacc 39


Query: 1377 acttgatggtgaagtaattaaatattctgtattttata 1414
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 38   acttgatggtgaagtaattaaatattctgtattttata 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,708,251,165
Number of extensions: 113550064
Number of successful extensions: 11009278
Number of sequences better than 10.0: 5238
Length of query: 1531
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1507
Effective length of database: 97,308,875,965
Effective search space: 146644476079255
Effective search space used: 146644476079255
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Contig-U11931-1Q.Seq.d
         (1531 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_55(AC116982|pid:none) Dictyostelium discoideum chromoso...   401   e-119
BC097996_1(BC097996|pid:none) Rattus norvegicus cDNA clone IMAGE...    53   3e-05
EF043965_1(EF043965|pid:none) Synthetic construct clone ATCC 106...    51   1e-04
BC029007_1(BC029007|pid:none) Mus musculus RIKEN cDNA 2610034M16...    51   1e-04
BX005083_7(BX005083|pid:none) Zebrafish DNA sequence from clone ...    50   3e-04
AB037727_1(AB037727|pid:none) Homo sapiens mRNA for KIAA1306 pro...    47   0.001
(Q8WXD9) RecName: Full=Caskin-1; AltName: Full=CASK-interacting ...    47   0.001
CP000473_4023(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    47   0.002
BC060720_1(BC060720|pid:none) Mus musculus CASK interacting prot...    46   0.003
(Q8VHK2) RecName: Full=Caskin-1; AltName: Full=CASK-interacting ...    46   0.003
(P79114) RecName: Full=Myosin-X; AltName: Full=Unconventional my...    46   0.003
BC138443_1(BC138443|pid:none) Mus musculus CASK interacting prot...    45   0.007
AK129327_1(AK129327|pid:none) Mus musculus mRNA for mKIAA1306 pr...    45   0.007
(Q9HD67) RecName: Full=Myosin-X; AltName: Full=Unconventional my...    45   0.009
AF132021_1(AF132021|pid:none) Homo sapiens myosin X (MYO10) mRNA...    45   0.009
AK316138_1(AK316138|pid:none) Homo sapiens cDNA, FLJ79037 comple...    45   0.009
AL832428_1(AL832428|pid:none) Homo sapiens mRNA; cDNA DKFZp762A0...    45   0.009
AX405628_1(AX405628|pid:none) Sequence 43 from Patent WO0222660.       45   0.009
AB018342_1(AB018342|pid:none) Homo sapiens mRNA for KIAA0799 pro...    45   0.009
AK074717_1(AK074717|pid:none) Homo sapiens cDNA FLJ90236 fis, cl...    45   0.009
BC024692_1(BC024692|pid:none) Mus musculus myosin X, mRNA (cDNA ...    44   0.012
BC156151_1(BC156151|pid:none) Synthetic construct Mus musculus c...    44   0.012
AK122371_1(AK122371|pid:none) Mus musculus mRNA for mKIAA0799 pr...    44   0.012
A59297(A59297) myosin X - mouse  &AJ249706_1(AJ249706|pid:none)        44   0.012
AK295630_1(AK295630|pid:none) Homo sapiens cDNA FLJ58530 complet...    44   0.016
AC116986_113(AC116986|pid:none) Dictyostelium discoideum chromos...    44   0.016
CP000142_2963(CP000142|pid:none) Pelobacter carbinolicus DSM 238...    44   0.021
AJ427856_1(AJ427856|pid:none) Dictyostelium discoideum ORF encod...    42   0.046
BT046464_1(BT046464|pid:none) Salmo salar clone ssal-evf-515-382...    42   0.046
(Q8WQ85) RecName: Full=Villidin;                                       42   0.046
BC140853_1(BC140853|pid:none) Homo sapiens inositol polyphosphat...    42   0.046
(O15357) RecName: Full=Phosphatidylinositol-3,4,5-trisphosphate ...    42   0.046
BT072585_1(BT072585|pid:none) Salmo salar clone ssal-rgf-531-222...    42   0.060
EF145537_1(EF145537|pid:none) Populus trichocarpa clone WS01125_...    42   0.060
BC119453_1(BC119453|pid:none) Mus musculus inositol polyphosphat...    42   0.060
(Q6P549) RecName: Full=Phosphatidylinositol-3,4,5-trisphosphate ...    42   0.060
AF162781_1(AF162781|pid:none) Mus musculus SH2-containing inosit...    42   0.060
(Q9WVR3) RecName: Full=Phosphatidylinositol-3,4,5-trisphosphate ...    42   0.060
(Q9UQC2) RecName: Full=GRB2-associated-binding protein 2; AltNam...    42   0.078
BC103524_1(BC103524|pid:none) Mus musculus growth factor recepto...    41   0.10
BC103525_1(BC103525|pid:none) Mus musculus growth factor recepto...    41   0.10
BC103527_1(BC103527|pid:none) Mus musculus growth factor recepto...    41   0.10
AF104244_1(AF104244|pid:none) Mus musculus PH domain containing ...    41   0.10
AB011143_1(AB011143|pid:none) Homo sapiens mRNA for KIAA0571 pro...    41   0.13
BC049429_1(BC049429|pid:none) Danio rerio GRB2-associated bindin...    41   0.13
CP000099_1874(CP000099|pid:none) Methanosarcina barkeri str. Fus...    40   0.18
AB032965_1(AB032965|pid:none) Homo sapiens mRNA for KIAA1139 pro...    40   0.23
(Q8WXE0) RecName: Full=Caskin-2;  &AB462970_1(AB462970|pid:none)...    40   0.23
AL645852_12(AL645852|pid:none) Mouse DNA sequence from clone RP2...    40   0.23
(Q8VHK1) RecName: Full=Caskin-2;                                       40   0.23
AK300354_1(AK300354|pid:none) Homo sapiens cDNA FLJ53194 complet...    40   0.23
CU633438_798(CU633438|pid:none) Podospora anserina genomic DNA c...    40   0.23
AK129297_1(AK129297|pid:none) Mus musculus mRNA for mKIAA1139 pr...    40   0.23
AK315936_1(AK315936|pid:none) Homo sapiens cDNA, FLJ78835 comple...    40   0.23
AE014134_693(AE014134|pid:none) Drosophila melanogaster chromoso...    40   0.23
DQ848969_1(DQ848969|pid:none) Scophthalmus maximus clone sba1473...    40   0.30
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    40   0.30
BC064211_1(BC064211|pid:none) Xenopus tropicalis Centaurin-alpha...    40   0.30
FJ172672_1(FJ172672|pid:none) Marsupenaeus japonicus centaurin-a...    40   0.30
(Q55GV3) RecName: Full=Serine/threonine-protein kinase pakC;    ...    40   0.30
AC117072_36(AC117072|pid:none) Dictyostelium discoideum chromoso...    39   0.39
AF277804_1(AF277804|pid:none) Dictyostelium discoideum PakC mRNA...    39   0.39
BT026166_1(BT026166|pid:none) Bos taurus Rho GTPase activating p...    39   0.39
(Q5U2Z7) RecName: Full=Rho GTPase-activating protein 24; AltName...    39   0.39
AJ310446_1(AJ310446|pid:none) Oncorhynchus mykiss mRNA for Pleck...    39   0.51
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating...    39   0.51
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName...    39   0.51
AK091196_1(AK091196|pid:none) Homo sapiens cDNA FLJ33877 fis, cl...    39   0.51
BC084161_1(BC084161|pid:none) Xenopus laevis hypothetical LOC495...    39   0.66
(Q6WCQ1) RecName: Full=Myosin phosphatase Rho-interacting protei...    39   0.66
(Q8N4B1) RecName: Full=Protein FAM109A;  &BC034809_1(BC034809|pi...    38   0.87
AE014297_3234(AE014297|pid:none) Drosophila melanogaster chromos...    38   0.87
BC153230_1(BC153230|pid:none) Bos taurus myosin phosphatase-Rho ...    38   0.87
AY241695_1(AY241695|pid:none) Mus musculus IRF4-binding protein ...    38   0.87
AK126283_1(AK126283|pid:none) Homo sapiens cDNA FLJ44298 fis, cl...    38   0.87
AK299344_1(AK299344|pid:none) Homo sapiens cDNA FLJ61356 complet...    38   0.87
(Q8WWW8) RecName: Full=GRB2-associated-binding protein 3; AltNam...    38   0.87
AB384499_1(AB384499|pid:none) Synthetic construct DNA, clone: pF...    38   1.1
AK036211_1(AK036211|pid:none) Mus musculus 16 days neonate cereb...    38   1.1
AK135018_1(AK135018|pid:none) Mus musculus adult male olfactory ...    38   1.1
BX322570_1(BX322570|pid:none) Zebrafish DNA sequence from clone ...    38   1.1
AE014298_127(AE014298|pid:none) Drosophila melanogaster chromoso...    38   1.1
X13411_1(X13411|pid:none) Rat mRNA for elk protein.                    38   1.1
(Q9W5D0) RecName: Full=Uncharacterized protein CG42248;                38   1.1
BC141240_1(BC141240|pid:none) Mus musculus growth factor recepto...    38   1.1
BC077609_1(BC077609|pid:none) Xenopus laevis hypothetical protei...    38   1.1
AY057988_1(AY057988|pid:none) Mus musculus GAB3 mRNA, complete c...    38   1.1
(Q8CBF3) RecName: Full=Ephrin type-B receptor 1;          EC=2.7...    38   1.1
(Q8BSM5) RecName: Full=GRB2-associated-binding protein 3; AltNam...    38   1.1
(Q7SYB5) RecName: Full=Differentially expressed in FDCP 6 homolo...    38   1.1
AK296914_1(AK296914|pid:none) Homo sapiens cDNA FLJ59923 complet...    37   1.5
BT080786_1(BT080786|pid:none) Caligus clemensi clone ccle-evs-51...    37   1.5
BC061706_1(BC061706|pid:none) Danio rerio pleckstrin, mRNA (cDNA...    37   1.5
BT080347_1(BT080347|pid:none) Caligus clemensi clone ccle-evs-50...    37   1.5
AE014297_358(AE014297|pid:none) Drosophila melanogaster chromoso...    37   1.5
EF563993_1(EF563993|pid:none) Phytophthora infestans cellulose s...    37   1.5
BC077980_1(BC077980|pid:none) Xenopus laevis hypothetical protei...    37   1.5
CP000099_3549(CP000099|pid:none) Methanosarcina barkeri str. Fus...    37   1.5
BC142337_1(BC142337|pid:none) Bos taurus differentially expresse...    37   1.9
BT045566_1(BT045566|pid:none) Salmo salar clone ssal-rgf-525-017...    37   1.9
AB118104_1(AB118104|pid:none) Entamoeba histolytica gene for hyp...    37   1.9
BC089655_1(BC089655|pid:none) Xenopus tropicalis dual adaptor of...    37   1.9
AJ005026_1(AJ005026|pid:none) Danio rerio mRNA for Eph-like rece...    37   1.9
(Q1ZXH8) RecName: Full=Guanine exchange factor for Rac 30;             37   1.9
BC141790_1(BC141790|pid:none) Danio rerio hypothetical protein L...    37   2.5
BC017504_1(BC017504|pid:none) Homo sapiens cDNA clone MGC:23250 ...    36   3.3
BC090556_1(BC090556|pid:none) Xenopus tropicalis pleckstrin, mRN...    36   3.3
CU633870_30(CU633870|pid:none) Podospora anserina genomic DNA ch...    36   3.3
(B0T2E4) RecName: Full=30S ribosomal protein S13;  &CP000927_162...    36   3.3
(Q07494) RecName: Full=Ephrin type-B receptor 1;          EC=2.7...    36   3.3
AK314756_1(AK314756|pid:none) Homo sapiens cDNA, FLJ95623, highl...    36   3.3
AY241694_1(AY241694|pid:none) Homo sapiens IRF4-binding protein ...    36   3.3
BX950851_310(BX950851|pid:none) Erwinia carotovora subsp. atrose...    36   3.3
EF563994_1(EF563994|pid:none) Phytophthora infestans cellulose s...    36   4.3
T21956(T21956) hypothetical protein F38B7.3 - Caenorhabditis ele...    36   4.3
EF564002_1(EF564002|pid:none) Phytophthora ramorum cellulose syn...    36   4.3
AK222397_1(AK222397|pid:none) Ciona intestinalis mRNA for zinc f...    36   4.3
(Q9ERE6) RecName: Full=Myosin phosphatase Rho-interacting protei...    35   5.6
AE014297_1815(AE014297|pid:none) Drosophila melanogaster chromos...    35   5.6
AK154807_1(AK154807|pid:none) Mus musculus NOD-derived CD11c +ve...    35   5.6
BC098911_1(BC098911|pid:none) Rattus norvegicus myosin phosphata...    35   5.6
AK171089_1(AK171089|pid:none) Mus musculus NOD-derived CD11c +ve...    35   5.6
AE014297_1813(AE014297|pid:none) Drosophila melanogaster chromos...    35   5.6
CP001185_1754(CP001185|pid:none) Thermosipho africanus TCF52B, c...    35   5.6
AK158296_1(AK158296|pid:none) Mus musculus adult inner ear cDNA,...    35   5.6
AK044512_1(AK044512|pid:none) Mus musculus adult retina cDNA, RI...    35   5.6
(Q5SWZ7) RecName: Full=Myosin phosphatase Rho-interacting protei...    35   5.6
AL596204_4(AL596204|pid:none) Mouse DNA sequence from clone RP23...    35   5.6
AK342598_1(AK342598|pid:none) Acyrthosiphon pisum ACYPI004941 mR...    35   7.3
AK294913_1(AK294913|pid:none) Homo sapiens cDNA FLJ58396 complet...    35   7.3
AF037332_1(AF037332|pid:none) Homo sapiens Eph-like receptor tyr...    35   7.3
BC111744_1(BC111744|pid:none) Homo sapiens EPH receptor B1, mRNA...    35   7.3
(Q14644) RecName: Full=Ras GTPase-activating protein 3; AltName:...    35   7.3
AF037331_1(AF037331|pid:none) Homo sapiens Eph-like receptor tyr...    35   7.3
AL596204_6(AL596204|pid:none) Mouse DNA sequence from clone RP23...    35   7.3
BC073109_1(BC073109|pid:none) Xenopus laevis hypothetical protei...    35   7.3
CR847826_1(CR847826|pid:none) Zebrafish DNA sequence from clone ...    35   7.3
(P54762) RecName: Full=Ephrin type-B receptor 1;          EC=2.7...    35   7.3
AE013599_2100(AE013599|pid:none) Drosophila melanogaster chromos...    35   7.3
AK095305_1(AK095305|pid:none) Homo sapiens cDNA FLJ37986 fis, cl...    35   7.3
AP007255_4208(AP007255|pid:none) Magnetospirillum magneticum AMB...    35   7.4
(P54754) RecName: Full=Ephrin type-B receptor 3;          EC=2.7...    35   9.6
A68114_1(A68114|pid:none) Sequence 23 from Patent WO9745538.           35   9.6
AX671072_1(AX671072|pid:none) Sequence 27 from Patent WO03004529...    35   9.6
(Q07498) RecName: Full=Ephrin type-B receptor 3;          EC=2.7...    35   9.6
AL844509_599(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.6
AE014297_3239(AE014297|pid:none) Drosophila melanogaster chromos...    35   9.6
(P54753) RecName: Full=Ephrin type-B receptor 3;          EC=2.7...    35   9.6
(Q9WV52) RecName: Full=Pleckstrin-2;  &AF157600_1(AF157600|pid:n...    35   9.6
A68112_1(A68112|pid:none) Sequence 21 from Patent WO9745538.           35   9.6
CP001087_4741(CP001087|pid:none) Desulfobacterium autotrophicum ...    35   9.6

>AC116982_55(AC116982|pid:none) Dictyostelium discoideum chromosome 2
            map 3622643-3879522 strain AX4, complete sequence.
          Length = 761

 Score =  311 bits (796), Expect(3) = e-119
 Identities = 150/150 (100%), Positives = 150/150 (100%)
 Frame = +1

Query: 988  VTFTWNLPYSIPAGQMKLQRQLKDKFGSDIVNTFDIAHYNPTDIISLPLQPLGKVSSTRT 1167
            VTFTWNLPYSIPAGQMKLQRQLKDKFGSDIVNTFDIAHYNPTDIISLPLQPLGKVSSTRT
Sbjct: 602  VTFTWNLPYSIPAGQMKLQRQLKDKFGSDIVNTFDIAHYNPTDIISLPLQPLGKVSSTRT 661

Query: 1168 QTGFNFDLNGLFIVETYEIRVNNGREEPIKITVEESLYRSTFWEITSSSHKFTPHPTHSR 1347
            QTGFNFDLNGLFIVETYEIRVNNGREEPIKITVEESLYRSTFWEITSSSHKFTPHPTHSR
Sbjct: 662  QTGFNFDLNGLFIVETYEIRVNNGREEPIKITVEESLYRSTFWEITSSSHKFTPHPTHSR 721

Query: 1348 KIHWQLSIPPLDGEVIKYSVFYSGLNLPAS 1437
            KIHWQLSIPPLDGEVIKYSVFYSGLNLPAS
Sbjct: 722  KIHWQLSIPPLDGEVIKYSVFYSGLNLPAS 751

 Score =  143 bits (360), Expect(3) = e-119
 Identities = 67/67 (100%), Positives = 67/67 (100%)
 Frame = +3

Query: 756 GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQKYA 935
           GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQKYA
Sbjct: 525 GFGGDSETPVPEKRIYRYEVPHKTTLRDGESKQICFVSTKLPVKSFDFITFATPNYQKYA 584

Query: 936 MIGKDQG 956
           MIGKDQG
Sbjct: 585 MIGKDQG 591

 Score = 22.3 bits (46), Expect(3) = e-119
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 1440 TAKKDEKTN 1466
            TAKKDEKTN
Sbjct: 753  TAKKDEKTN 761

 Score =  401 bits (1030), Expect = e-110
 Identities = 207/239 (86%), Positives = 208/239 (87%)
 Frame = +3

Query: 27  MSTLEQYLKVIGLESYKDLMIDIGYDDPELISELTEDDLVAINVKRGHAKRAFLKAKELA 206
           MSTLEQYLKVIGL+SYKDLMID GYDDPELISELTEDDLVAINVKRGHAKRAFLKAKELA
Sbjct: 1   MSTLEQYLKVIGLKSYKDLMIDNGYDDPELISELTEDDLVAINVKRGHAKRAFLKAKELA 60

Query: 207 GKQNESSAKSPDVXXXXXXXXXXXXXXXXXXXPVEEKKRTTTISIGKKGXXXXXXXXXXX 386
           GKQNESSAKSPDV                   PVEEKKRTTTISIGKKG
Sbjct: 61  GKQNESSAKSPDVSSSTTTASTSSSSSSSTSAPVEEKKRTTTISIGKKGEDNDDDDEEEE 120

Query: 387 KASYSGPILQSKVLNEGFIQKKGNEGFFGSKMFQKRYFKIYEEGRLAYFKNQNDVSPIGV 566
           KASYSGPILQSKVLNEGFIQKKGNEGFFGSKMFQKRYFKIYEEGRLAYFKNQNDVSPIGV
Sbjct: 121 KASYSGPILQSKVLNEGFIQKKGNEGFFGSKMFQKRYFKIYEEGRLAYFKNQNDVSPIGV 180

Query: 567 IEMKGALACEDMEGKPQGFKLSMKTSARVYWLVAMTNDQKQKWVSVIKQQITPPAVPKP 743
           IEMKGALACEDMEGKPQGFKLSMKTSARVYWLVAMTNDQKQKWVSVIKQQITPPAVPKP
Sbjct: 181 IEMKGALACEDMEGKPQGFKLSMKTSARVYWLVAMTNDQKQKWVSVIKQQITPPAVPKP 239

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,280,920,512
Number of extensions: 45991823
Number of successful extensions: 97950
Number of sequences better than 10.0: 151
Number of HSP's gapped: 97917
Number of HSP's successfully gapped: 163
Length of query: 510
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 377
Effective length of database: 620,718,517
Effective search space: 234010880909
Effective search space used: 234010880909
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.73  gvh: 0.27  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U11931-1 is cyt
VS (DIR, S) 0
VH (FL, L) 5
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0