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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11928-1
Contig ID Contig-U11928-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11928-1 (Contig-U11928-1Q) /CSM_Contig/Contig-U11928-1Q.Seq.d
AATAACACAATAAAATTATTTATTTATAAATTATACTTATTCAATACTTT
TGAATTTTAAAACAATAGTTTTTCAAAATAAAGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANTTTTTTNTTTTTNAAAAAAAAANNNNNNNNN--
--------TTTATGGTACGGATTATACAAAGATTGGGTTATCTTCTGACA
CAATTGCAAGTAGTTTCGGAAAGGTGATCTATGAGAATGAAAAGAAGAAA
ATTAGTGGAGAAGAAAATATTAAAAAGGAAGATATAGCTCAAAGTCTATT
GAAAATGGTATCGAATAATATCGGTCAAATAGCGTATTTAAATTCACAAC
GTTATGGTTTAAATAAAATTTATTTCGGTGGTTTCTTCATTAGAGATCAT
CCAAATACAATGCAACGTATTTCATTTGCCATTGATTTTTGGTCAAAAGG
TCAAACAAAGGCTATGTTTTTAGTACACGATGGTTATTTAGGTGCACTTG
GTTCATTTTTGGCTCCTGACGAAGACGATTTAATTTCAAATGACGACGAT
GACAATAATAATAACAATAATAACAATAATAATAATAATATTGATTCTTC
AAGTAGTAATAATAATGATAATAGTGGTGATGTTAAAGTCAAAGGTTCAA
CATCTTCAACAATCGTTAATCAATCAAGTTGGTGGAAACGTAAAACTAAT
TTCGAAAGTTATATTTCAAAATTATTTTCACCAAAAACTTCAAACACAAC
TATAACTACAACTACAACTACAAATGTAAATAGTAACAATATCAATAGTA
GTAATGAAAATACACTCCAAAATGTTTTAACAAAAAGTAGTGNTAATTGC
GAATGTGGTTGTGATTTTTGTAATTTCTTGTCATATGAAATTTAATTTAA
AAGCAGTAACA
Gap gap included
Contig length 901
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3995607
End point 3996482
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U11928
List of clone(s) 

est1=CHQ642F,1,139
est2=CHQ642Z,140,704
est3=VHJ471Z,142,715
est4=SSI551E,244,893
Translated Amino Acid sequence 
itq*NYLFINYTYSILLNFKTIVFQNKEKKKKKKKKKKXFXFXKKKXXX---

---YGTDYTKIGLSSDTIASSFGKVIYENEKKKISGEENIKKEDIAQSLLKMVSNNIGQI
AYLNSQRYGLNKIYFGGFFIRDHPNTMQRISFAIDFWSKGQTKAMFLVHDGYLGALGSFL
APDEDDLISNDDDDNNNNNNNNNNNNIDSSSSNNNDNSGDVKVKGSTSSTIVNQSSWWKR
KTNFESYISKLFSPKTSNTTITTTTTTNVNSNNINSSNENTLQNVLTKSSXNCECGCDFC
NFLSYEI*fkssn
Translated Amino Acid sequence (All Frames) 
Frame A:
nntiklfiyklylfntfef*nnsfsk*rkkkkkkkkkkxffxfxkkxxx---

---fmvriiqrlgylltqlqvvser*smrmkrrklvekkilkrki*lkvy*kwyriisvk
*ri*ihnvmv*ikfisvvssleiiqiqcnvfhlplifgqkvkqrlcf*ytmvi*vhlvhf
wlltkti*fqmttmtiiitiitiiiiililqvviimiivvmlkskvqhlqqslinqvggn
vkliskvifqnyfhqklqtql*lqlqlqm*ivtisivvmkihskmf*qkvvxianvvvif
vischmkfnlkavt

Frame B:
itq*NYLFINYTYSILLNFKTIVFQNKEKKKKKKKKKKXFXFXKKKXXX---

---lwyglykdwvif*hnck*frkgdl*e*keen*wrrky*kgryssksiengie*yrsn
svfkfttlwfk*nlfrwflh*rsskynatyfich*flvkrsnkgyvfstrwlfrctwfif
gs*rrrfnfk*rr*q***q**q****y*ffk*******w*c*sqrfnifnnr*siklvet
*n*frklyfkiiftknfkhnynynynykck**qyq****kytpkcfnkk*x*lrmwl*fl
*flvi*nli*kq*

Frame C:
*hnkiiyl*iiliqyf*ilkq*ffkikkkkkkkkkkkkxfxfxkkxxx---

---YGTDYTKIGLSSDTIASSFGKVIYENEKKKISGEENIKKEDIAQSLLKMVSNNIGQI
AYLNSQRYGLNKIYFGGFFIRDHPNTMQRISFAIDFWSKGQTKAMFLVHDGYLGALGSFL
APDEDDLISNDDDDNNNNNNNNNNNNIDSSSSNNNDNSGDVKVKGSTSSTIVNQSSWWKR
KTNFESYISKLFSPKTSNTTITTTTTTNVNSNNINSSNENTLQNVLTKSSXNCECGCDFC
NFLSYEI*fkssn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11928-1 (Contig-U11928-1Q)
/CSM_Contig/Contig-U11928-1Q.Seq.d
         (911 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11928-1 (Contig-U11928-1Q) /CSM_Contig/Conti...   781  0.0
Contig-U04460-1 (Contig-U04460-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U13346-1 (Contig-U13346-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U11446-1 (Contig-U11446-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U00454-1 (Contig-U00454-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U05856-1 (Contig-U05856-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U03919-1 (Contig-U03919-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14479-1 (Contig-U14479-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U11928-1 (Contig-U11928-1Q) /CSM_Contig/Contig-U11928-1Q.Seq.d
          Length = 911

 Score =  781 bits (394), Expect = 0.0
 Identities = 394/394 (100%)
 Strand = Plus / Plus

                                                                       
Query: 159 tttatggtacggattatacaaagattgggttatcttctgacacaattgcaagtagtttcg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tttatggtacggattatacaaagattgggttatcttctgacacaattgcaagtagtttcg 218

                                                                       
Query: 219 gaaaggtgatctatgagaatgaaaagaagaaaattagtggagaagaaaatattaaaaagg 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaaaggtgatctatgagaatgaaaagaagaaaattagtggagaagaaaatattaaaaagg 278

                                                                       
Query: 279 aagatatagctcaaagtctattgaaaatggtatcgaataatatcggtcaaatagcgtatt 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aagatatagctcaaagtctattgaaaatggtatcgaataatatcggtcaaatagcgtatt 338

                                                                       
Query: 339 taaattcacaacgttatggtttaaataaaatttatttcggtggtttcttcattagagatc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 taaattcacaacgttatggtttaaataaaatttatttcggtggtttcttcattagagatc 398

                                                                       
Query: 399 atccaaatacaatgcaacgtatttcatttgccattgatttttggtcaaaaggtcaaacaa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atccaaatacaatgcaacgtatttcatttgccattgatttttggtcaaaaggtcaaacaa 458

                                                                       
Query: 459 aggctatgtttttagtacacgatggttatttaggtgcacttggttcatttttggctcctg 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aggctatgtttttagtacacgatggttatttaggtgcacttggttcatttttggctcctg 518

                                             
Query: 519 acgaagacgatttaatttcaaatgacgacgatga 552
           ||||||||||||||||||||||||||||||||||
Sbjct: 519 acgaagacgatttaatttcaaatgacgacgatga 552


 Score =  630 bits (318), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Plus

                                                                       
Query: 591 ttgattcttcaagtagtaataataatgataatagtggtgatgttaaagtcaaaggttcaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttgattcttcaagtagtaataataatgataatagtggtgatgttaaagtcaaaggttcaa 650

                                                                       
Query: 651 catcttcaacaatcgttaatcaatcaagttggtggaaacgtaaaactaatttcgaaagtt 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 catcttcaacaatcgttaatcaatcaagttggtggaaacgtaaaactaatttcgaaagtt 710

                                                                       
Query: 711 atatttcaaaattattttcaccaaaaacttcaaacacaactataactacaactacaacta 770
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 atatttcaaaattattttcaccaaaaacttcaaacacaactataactacaactacaacta 770

                                                                       
Query: 771 caaatgtaaatagtaacaatatcaatagtagtaatgaaaatacactccaaaatgttttaa 830
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 caaatgtaaatagtaacaatatcaatagtagtaatgaaaatacactccaaaatgttttaa 830

                                                                       
Query: 831 caaaaagtagtgntaattgcgaatgtggttgtgatttttgtaatttcttgtcatatgaaa 890
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 caaaaagtagtgntaattgcgaatgtggttgtgatttttgtaatttcttgtcatatgaaa 890

                                
Query: 891 tttaatttaaaagcagtaaca 911
           |||||||||||||||||||||
Sbjct: 891 tttaatttaaaagcagtaaca 911


 Score =  165 bits (83), Expect = 1e-40
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aataacacaataaaattatttatttataaattatacttattcaatacttttgaattttaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aataacacaataaaattatttatttataaattatacttattcaatacttttgaattttaa 60

                                 
Query: 61 aacaatagtttttcaaaataaag 83
          |||||||||||||||||||||||
Sbjct: 61 aacaatagtttttcaaaataaag 83


>Contig-U04460-1 (Contig-U04460-1Q) /CSM_Contig/Contig-U04460-1Q.Seq.d
          Length = 396

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 130 acaactacaactacaactacaactacaa 157


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 172 acaactacaactacaactacaactacaa 199


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 136 acaactacaactacaactacaactacaa 163


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 166 acaactacaactacaactacaactacaa 193


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 142 acaactacaactacaactacaactacaa 169


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 148 acaactacaactacaactacaactacaa 175


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 154 acaactacaactacaactacaactacaa 181


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 746 acaactataactacaactacaactacaa 773
           ||||||| ||||||||||||||||||||
Sbjct: 160 acaactacaactacaactacaactacaa 187


 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 746 acaactataactacaactacaact 769
           ||||||| ||||||||||||||||
Sbjct: 178 acaactacaactacaactacaact 201


>Contig-U13346-1 (Contig-U13346-1Q) /CSM_Contig/Contig-U13346-1Q.Seq.d
          Length = 1364

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 607 taataataatgataatagtggtgatgttaaa 637
           |||||||||| |||||||||||||| |||||
Sbjct: 713 taataataataataatagtggtgatattaaa 743


 Score = 32.2 bits (16), Expect = 1.0
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 604 tagtaataataatgataata 623
           ||||||||||||| ||||||
Sbjct: 563 tagtaataataataataata 582


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,715
Number of Sequences: 6905
Number of extensions: 20715
Number of successful extensions: 3551
Number of sequences better than 10.0: 686
length of query: 911
length of database: 5,674,871
effective HSP length: 16
effective length of query: 895
effective length of database: 5,564,391
effective search space: 4980129945
effective search space used: 4980129945
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11928-1 (Contig-U11928-1Q) /CSM_Contig/Contig-U11928-1Q.Seq.d
         (911 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ442380) Dictyostelium discoideum cDNA clone:ddv49n18, 3' ...   771   0.0    2
(BJ385532) Dictyostelium discoideum cDNA clone:ddc55c12, 3' ...   783   0.0    2
(C90454) Dictyostelium discoideum slug cDNA, clone SSI551.        533   e-151  2
(AU073857) Dictyostelium discoideum slug cDNA, clone SSI551.      468   e-127  1
(BJ370751) Dictyostelium discoideum cDNA clone:ddc55c12, 5' ...   165   4e-36  1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    40   3e-04  10
(AM469912) Vitis vinifera contig VV78X083756.2, whole genome...    54   0.009  1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    40   0.014  7
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.022  13
(AP008057) Lotus japonicus genomic DNA, chromosome 2, clone:...    38   0.025  2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    46   0.025  12
(AP008094) Lotus japonicus genomic DNA, chromosome 2, clone:...    38   0.025  2
(EW789924) G893P515RA4.T0 Ixodes scapularis Pooled Non-infec...    36   0.030  2
(EW783174) G893P55RN20.T0 Ixodes scapularis Pooled Non-infec...    36   0.030  2
(EW900304) G894P5132FP7.T0 Ixodes scapularis Pooled Non-infe...    36   0.030  2
(EW797134) G893P528RM18.T0 Ixodes scapularis Pooled Non-infe...    36   0.030  2
(EW786456) G893P58RF1.T0 Ixodes scapularis Pooled Non-infect...    36   0.030  2
(EW787151) G893P510RD24.T0 Ixodes scapularis Pooled Non-infe...    36   0.030  2
(EW809285) G893P549RO20.T0 Ixodes scapularis Pooled Non-infe...    36   0.030  2
(EW787048) G893P510RB18.T0 Ixodes scapularis Pooled Non-infe...    36   0.030  2
(EW782538) G893P54RP19.T0 Ixodes scapularis Pooled Non-infec...    36   0.030  2
(EW812461) G893P554RE6.T0 Ixodes scapularis Pooled Non-infec...    36   0.030  2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    40   0.033  13
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.037  17
(BS000109) Pan troglodytes chromosome 22 clone:RP43-150L08, ...    52   0.037  1
(Y17350) Laminaria digitata simple tandem repeat DNA, Ld2-167.     52   0.037  1
(CR380956) Candida glabrata strain CBS138 chromosome J compl...    52   0.037  1
(CR380948) Candida glabrata strain CBS138 chromosome B compl...    52   0.037  1
(AP001709) Homo sapiens genomic DNA, chromosome 21q, section...    52   0.037  1
(AP000245) Homo sapiens genomic DNA, chromosome 21 clone:RP1...    52   0.037  1
(AP000206) Homo sapiens genomic DNA, chromosome 21q22.1, D21...    52   0.037  1
(EI211483) DB__Ba0001E21.f DB__Ba Drosophila busckii genomic...    52   0.037  1
(BZ295988) CG1792.r1 Candida glabrata Random Genomic Library...    52   0.037  1
(BM302245) MCA040D03_23674 Ice plant Lambda Uni-Zap XR expre...    52   0.037  1
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ...    38   0.041  9
(AC018783) Homo sapiens clone RP11-2M13, WORKING DRAFT SEQUE...    48   0.057  5
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...    44   0.065  5
(AC092755) Homo sapiens chromosome 15 clone RP11-361D15 map ...    36   0.097  5
(DV769162) ILLUMIGEN_MCQ_67926 Katze_MMTE Macaca mulatta cDN...    38   0.11   2
(EU494426) Chymomyza procnemis voucher 106326 16S ribosomal ...    38   0.12   3
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    36   0.13   9
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    50   0.14   4
(DD061484) Methods and nucleic acids for the analysis of  he...    34   0.14   4
(AX599046) Sequence 386 from Patent WO02077272.                    34   0.14   4
(EK236026) 1095460200021 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.14   2
(CR380951) Candida glabrata strain CBS138 chromosome A compl...    50   0.15   1
(BT033030) Arabidopsis thaliana unknown protein (At2g38470) ...    50   0.15   1
(AM480544) Vitis vinifera contig VV78X095980.8, whole genome...    50   0.15   1
(AK226301) Arabidopsis thaliana mRNA for putative WRKY-type ...    50   0.15   1
(AF509499) Arabidopsis thaliana WRKY transcription factor 33...    50   0.15   1
(AC232111) Solanum tuberosum strain Diploid genotype RH89-03...    50   0.15   1
(AC004683) Arabidopsis thaliana chromosome 2 clone T19C21 ma...    50   0.15   1
(EA483194) Sequence 617 from patent US 7345217.                    50   0.15   1
(CS486650) Sequence 17 from Patent WO2007003409.                   50   0.15   1
(AX651760) Sequence 606 from Patent WO03000898.                    50   0.15   1
(AX506109) Sequence 804 from Patent WO0216655.                     50   0.15   1
(AX463546) Sequence 2 from Patent WO0250293.                       50   0.15   1
(AX412905) Sequence 669 from Patent WO0222675.                     50   0.15   1
(AX412575) Sequence 339 from Patent WO0222675.                     50   0.15   1
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    50   0.15   1
(AC122076) Rattus norvegicus clone CH230-277E22, *** SEQUENC...    50   0.15   1
(CU695279) Brassica rapa subsp. pekinensis clone KBrB124L09,...    50   0.15   1
(AC189494) Brassica rapa subsp. pekinensis clone KBrB085E04,...    50   0.15   1
(AC184221) Strongylocentrotus purpuratus clone R3-3056C10, W...    50   0.15   1
(BX820392) Arabidopsis thaliana Full-length cDNA Complete se...    50   0.15   1
(EK821705) 1093017251262 Global-Ocean-Sampling_GS-33-01-01-1...    50   0.15   1
(EK142369) 1095454143602 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.15   1
(EL499215) PFLAB1-S_F3_-P13A_D04_08.AB1 Blood stage Plasmodi...    50   0.15   1
(EG480700) AYBLT89TF pooled cDNA populations Arabidopsis tha...    50   0.15   1
(EE258800) RFAB236TH Castor bean cDNA library from flowers,8...    50   0.15   1
(EE255148) RFAA437TH Castor bean cDNA library from flowers,8...    50   0.15   1
(EC773858) EST 10354 Guarana fruits cDNA library Paullinia c...    50   0.15   1
(EC773833) EST 10329 Guarana fruits cDNA library Paullinia c...    50   0.15   1
(AV822785) Arabidopsis thaliana cDNA clone:RAFL05-11-J06, 5'...    50   0.15   1
(DR750854) 35-L022529-065-010-C05-SeLA MPIZ-ADIS-065d Arabid...    50   0.15   1
(DN966979) camcoP044B12 camco Biomphalaria glabrata cDNA clo...    50   0.15   1
(AJ808144) Antirrhinum majus EST, clone 018_6_08_m21.              50   0.15   1
(CB257330) 33-E012741-027-007-A09-T7R MPIZ-ADIS-027 Arabidop...    50   0.15   1
(CB254765) 60-E015333-019-005-H16-T7R MPIZ-ADIS-019 Arabidop...    50   0.15   1
(BU636805) 011H06 Infected Arabidopsis Leaf Arabidopsis thal...    50   0.15   1
(BP614143) Arabidopsis thaliana cDNA clone:RAFL16-95-M01, 3'...    50   0.15   1
(EX948726) lj88a07.g7 Gnetum gnemon leaf (NYBG) Gnetum gnemo...    50   0.15   1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.20   11
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    46   0.22   11
(AL133245) BAC sequence from the SPG4 candidate region at 2p...    38   0.22   6
(BX294667) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.23   8
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.24   13
(AC211044) Solanum lycopersicum chromosome 6 clone C06HBa010...    38   0.29   8
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.34   15
(AC189257) Brassica rapa subsp. pekinensis clone KBrB021I11,...    40   0.38   4
(AC024798) Caenorhabditis elegans cosmid Y48G9A, complete se...    34   0.40   6
(EU028329) Glycine max clone BAC gmw1-24M16 genomic sequence.      34   0.45   7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.48   10
(AM445921) Vitis vinifera contig VV78X016110.8, whole genome...    38   0.55   5
(DE228405) Trifolium pratense DNA, clone:RCG21292.                 36   0.57   2
(CR382374) Zebrafish DNA sequence from clone DKEY-151E22 in ...    48   0.58   1
(BX927071) Zebrafish DNA sequence from clone DKEY-286O23 in ...    48   0.58   1
(AL672127) Mouse DNA sequence from clone RP23-370O18 on chro...    48   0.58   1
(AC158917) Mus musculus chromosome 5, clone RP24-238D24, com...    48   0.58   1
(AC154740) Mus musculus BAC clone RP23-118I16 from chromosom...    48   0.58   1

>(BJ442380) Dictyostelium discoideum cDNA clone:ddv49n18, 3' end,
           single read.
          Length = 574

 Score =  771 bits (389), Expect(2) = 0.0
 Identities = 392/393 (99%)
 Strand = Plus / Minus


Query: 161 tatggtacggattatacaaagattgggttatcttctgacacaattgcaagtagtttcgga 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tatggtacggattatacaaagattgggttatcttctgacacaattgcaagtagtttcgga 515


Query: 221 aaggtgatctatgagaatgaaaagaagaaaattagtggagaagaaaatattaaaaaggaa 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaggtgatctatgagaatgaaaagaagaaaattagtggagaagaaaatattaaaaaggaa 455


Query: 281 gatatagctcaaagtctattgaaaatggtatcgaataatatcggtcaaatagcgtattta 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gatatagctcaaagtctattgaaaatggtatcgaataatatcggtcaaatagcgtattta 395


Query: 341 aattcacaacgttatggtttaaataaaatttatttcggtggtttcttcattagagatcat 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aattcacaacgttatggtttaaataaaatttatttcggtggtttcttcattagagatcat 335


Query: 401 ccaaatacaatgcaacgtatttcatttgccattgatttttggtcaaaaggtcaaacaaag 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccaaatacaatgcaacgtatttcatttgccattgatttttggtcaaaaggtcaaacaaag 275


Query: 461 gctatgtttttagtacacgatggttatttaggtgcacttggttcatttttggctcctgac 520
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 274 gctatgtttttagtacacgatggttatttaggtggacttggttcatttttggctcctgac 215


Query: 521 gaagacgatttaatttcaaatgacgacgatgac 553
           |||||||||||||||||||||||||||||||||
Sbjct: 214 gaagacgatttaatttcaaatgacgacgatgac 182

 Score =  220 bits (111), Expect(2) = 0.0
 Identities = 111/111 (100%)
 Strand = Plus / Minus


Query: 624 gtggtgatgttaaagtcaaaggttcaacatcttcaacaatcgttaatcaatcaagttggt 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtggtgatgttaaagtcaaaggttcaacatcttcaacaatcgttaatcaatcaagttggt 52


Query: 684 ggaaacgtaaaactaatttcgaaagttatatttcaaaattattttcaccaa 734
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  ggaaacgtaaaactaatttcgaaagttatatttcaaaattattttcaccaa 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,236,317,134
Number of extensions: 81486221
Number of successful extensions: 7456184
Number of sequences better than 10.0: 925
Length of query: 911
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 887
Effective length of database: 97,308,875,965
Effective search space: 86312972980955
Effective search space used: 86312972980955
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11928-1 (Contig-U11928-1Q) /CSM_Contig/Contig-U11928-1Q.Seq.d
         (911 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB211526_1(AB211526|pid:none) Solanum lycopersicum mRNA for part...   152   1e-35
BT070390_1(BT070390|pid:none) Picea sitchensis clone WS02726_H21...   149   1e-34
AP005092_2(AP005092|pid:none) Oryza sativa Japonica Group genomi...   146   1e-33
(Q8L5Y9) RecName: Full=Pantothenate kinase 2;          EC=2.7.1....   145   2e-33
AL021811_18(AL021811|pid:none) Arabidopsis thaliana DNA chromoso...   145   2e-33
(O80765) RecName: Full=Pantothenate kinase 1;          EC=2.7.1....   141   3e-32
AE017343_483(AE017343|pid:none) Cryptococcus neoformans var. neo...   132   1e-29
CP000584_73(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ...   132   2e-29
U88170_5(U88170|pid:none) Caenorhabditis elegans cosmid C10G11, ...   131   3e-29
U88170_7(U88170|pid:none) Caenorhabditis elegans cosmid C10G11, ...   131   3e-29
CR954204_87(CR954204|pid:none) Ostreococcus tauri strain OTTH059...   130   6e-29
(Q04430) RecName: Full=Pantothenate kinase;          EC=2.7.1.33...   126   9e-28
CP001574_179(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   125   2e-27
AK050894_1(AK050894|pid:none) Mus musculus 9 days embryo whole b...   125   3e-27
CP000497_306(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...   125   3e-27
BX004788_5(BX004788|pid:none) Mouse DNA sequence from clone RP24...   125   3e-27
(Q923S8) RecName: Full=Pantothenate kinase 4;          EC=2.7.1....   125   3e-27
AK303127_1(AK303127|pid:none) Homo sapiens cDNA FLJ53892 complet...   124   3e-27
AB220455_1(AB220455|pid:none) Macaca fascicularis mRNA, clone Qc...   124   3e-27
(Q5R5F8) RecName: Full=Pantothenate kinase 4;          EC=2.7.1....   124   3e-27
(Q4R4U1) RecName: Full=Pantothenate kinase 4;          EC=2.7.1....   124   3e-27
AB169803_1(AB169803|pid:none) Macaca fascicularis brain cDNA, cl...   124   3e-27
AK223546_1(AK223546|pid:none) Homo sapiens mRNA for pantothenate...   124   3e-27
(Q9NVE7) RecName: Full=Pantothenate kinase 4;          EC=2.7.1....   124   3e-27
AE017343_482(AE017343|pid:none) Cryptococcus neoformans var. neo...   124   3e-27
AK295301_1(AK295301|pid:none) Homo sapiens cDNA FLJ56439 complet...   124   3e-27
AM270038_40(AM270038|pid:none) Aspergillus niger contig An02c044...   124   4e-27
AM920435_222(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   124   6e-27
BC055582_1(BC055582|pid:none) Danio rerio zgc:66285, mRNA (cDNA ...   124   6e-27
BC050089_1(BC050089|pid:none) Mus musculus pantothenate kinase 4...   123   7e-27
FM992693_247(FM992693|pid:none) Candida dubliniensis CD36 chromo...   122   1e-26
CU633899_22(CU633899|pid:none) Podospora anserina genomic DNA ch...   122   1e-26
CR382130_1020(CR382130|pid:none) Yarrowia lipolytica strain CLIB...   122   1e-26
BC123567_1(BC123567|pid:none) Bos taurus pantothenate kinase 4, ...   122   2e-26
CR382123_33(CR382123|pid:none) Kluyveromyces lactis strain NRRL ...   121   4e-26
FN392319_638(FN392319|pid:none) Pichia pastoris GS115 chromosome...   119   1e-25
CP001160_379(CP001160|pid:none) Thalassiosira pseudonana CCMP133...   119   2e-25
AM989980_20(AM989980|pid:none) Zygosaccharomyces rouxii strain C...   118   2e-25
CR382134_173(CR382134|pid:none) Debaryomyces hansenii strain CBS...   116   9e-25
EU954648_1(EU954648|pid:none) Zea mays clone 1475430 pantothenat...   114   6e-24
FN357489_6(FN357489|pid:none) Schistosoma mansoni genome sequenc...   113   1e-23
FN357489_7(FN357489|pid:none) Schistosoma mansoni genome sequenc...   113   1e-23
AK163377_1(AK163377|pid:none) Mus musculus 2 cells egg cDNA, RIK...   103   6e-21
(Q8R2W9) RecName: Full=Pantothenate kinase 3;          EC=2.7.1....   103   6e-21
(Q8K4K6) RecName: Full=Pantothenate kinase 1;          EC=2.7.1....   101   3e-20
AF200357_1(AF200357|pid:none) Mus musculus pantothenate kinase 1...   101   3e-20
AK017345_1(AK017345|pid:none) Mus musculus 6 days neonate head c...   101   3e-20
AK127777_1(AK127777|pid:none) Homo sapiens cDNA FLJ45878 fis, cl...   100   5e-20
AY027663_1(AY027663|pid:none) Homo sapiens pantothenate kinase 1...   100   7e-20
AK125428_1(AK125428|pid:none) Homo sapiens cDNA FLJ43439 fis, cl...   100   7e-20
(Q8TE04) RecName: Full=Pantothenate kinase 1;          EC=2.7.1....   100   7e-20
AL157400_2(AL157400|pid:none) Human DNA sequence from clone RP11...   100   7e-20
BC026296_1(BC026296|pid:none) Homo sapiens pantothenate kinase 1...   100   7e-20
BC101569_1(BC101569|pid:none) Homo sapiens pantothenate kinase 2...    97   1e-18
BC065019_1(BC065019|pid:none) Homo sapiens pantothenate kinase 2...    97   1e-18
AF494409_1(AF494409|pid:none) Homo sapiens pantothenate kinase 2...    97   1e-18
BC129366_1(BC129366|pid:none) Danio rerio zgc:158667, mRNA (cDNA...    97   1e-18
AK154080_1(AK154080|pid:none) Mus musculus 2 days neonate thymus...    95   3e-18
AE014296_3546(AE014296|pid:none) Drosophila melanogaster chromos...    95   3e-18
AE014296_3543(AE014296|pid:none) Drosophila melanogaster chromos...    95   3e-18
AY232166_1(AY232166|pid:none) Drosophila yakuba clone yak-ad_fbl...    95   3e-18
AK021791_1(AK021791|pid:none) Homo sapiens cDNA FLJ11729 fis, cl...    94   6e-18
FJ236705_1(FJ236705|pid:none) Ovis aries pantothenate kinase 2 i...    88   5e-16
T15791(T15791) hypothetical protein C42D8.3 - Caenorhabditis ele...    84   5e-15
AL157400_1(AL157400|pid:none) Human DNA sequence from clone RP11...    83   1e-14
AF355198_1(AF355198|pid:none) Homo sapiens pantothenate kinase m...    83   1e-14
AM494965_15(AM494965|pid:none) Leishmania braziliensis chromosom...    78   4e-13
F87801(F87801)protein C10G11.5 [imported] - Caenorhabditis elegans     50   1e-04
U88170_6(U88170|pid:none) Caenorhabditis elegans cosmid C10G11, ...    50   1e-04
AE014187_197(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    47   9e-04
AL353194_5(AL353194|pid:none) Human DNA sequence from clone RP11...    46   0.002
CR940353_411(CR940353|pid:none) Theileria annulata strain Ankara...    45   0.004
AE014187_352(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.2
AM398681_963(AM398681|pid:none) Flavobacterium psychrophilum JIP...    36   1.6
CP001398_1956(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    36   1.6
AE017244_668(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c...    35   4.6
CP001056_2073(CP001056|pid:none) Clostridium botulinum B str. Ek...    34   7.8

>AB211526_1(AB211526|pid:none) Solanum lycopersicum mRNA for
           partially similar to pantothenate kinase family protein,
           complete cds, clone:FC22BB07.
          Length = 426

 Score =  152 bits (385), Expect = 1e-35
 Identities = 75/116 (64%), Positives = 93/116 (80%)
 Frame = +2

Query: 164 GTDYTKIGLSSDTIASSFGKVIYENEKKKISGEENIKKEDIAQSLLKMVSNNIGQIAYLN 343
           G DY+KIGL+S  IASSFGK I EN++      E+ K EDIA+SLL+M+SNNIGQIAYLN
Sbjct: 252 GLDYSKIGLASTAIASSFGKAISENKEL-----EDYKPEDIARSLLRMISNNIGQIAYLN 306

Query: 344 SQRYGLNKIYFGGFFIRDHPNTMQRISFAIDFWSKGQTKAMFLVHDGYLGALGSFL 511
           + R+GL +I+ GGFFIRDH  TM  IS A+DFWSKG+ KAMFL H+G+LGALG+F+
Sbjct: 307 ALRFGLKRIFLGGFFIRDHAYTMDTISVAVDFWSKGEAKAMFLRHEGFLGALGAFM 362

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 970,928,787
Number of extensions: 15253083
Number of successful extensions: 35075
Number of sequences better than 10.0: 77
Number of HSP's gapped: 35002
Number of HSP's successfully gapped: 81
Length of query: 303
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 175
Effective length of database: 636,901,312
Effective search space: 111457729600
Effective search space used: 111457729600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.84  gvh: 0.35  alm: 0.41  top: 0.93  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.47  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for Contig-U11928-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0