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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11925-1
Contig ID Contig-U11925-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Contig-U11925-1Q.Seq.d
ATCTCGGTGTGCATTAAATAAATTTAGAAATAACAAAAATAATAATAATA
ATATTTTTTAAAATATTATAAAATTATTTTTTTTTTTTTTTNCNNTTTAA
AAAAAAAANNNNNNNNN----------TGATTCTTTTCAAGGAATGACAT
GAATTTATCCAATGAATTTAATTGAGAAGGTTGAATTTTATCACGATGAT
ATGAAACACCAATACTGTAATCACGAGAGCCTCTTTCCAAGGGGATCATC
CAAATCCAATAGCCTGGACCAAAGAAATGATTGGTATCGTAGGTCCAAGA
GCATGTCACATCTTGACTTTTGAAATCGAATAAACTTCTCTCTGTGTTTT
TCACTCTCACCCAAGTGCTTGCATTATCCAGACCAAATAAATGCTTTGGA
TCCTTTAAAATGTTATCGGTACGAGATCCAACAGTAAAGTTTCTACCACT
TGCATCCACAATATAATCAGTTGTCAATGTTATACGTTCAATTGATTGCT
GTAATTTGAAATCGGCACCAGATTCAACTTCACTTAGAATTTCAACATCG
ATTGATTTCATATCATCGTTATCTAAATTATCAACATTTCTAACTCTACC
ATGGTAGTAGACTGCGCCTTGGGCAATTACCATTTTCAATAGATCACGCT
CAATCTTGCAACGGTTCAATTGAAAAGCTTGGATATCTGGATTCTTTACT
GCCCATGTACTATAGTAGTCTTCAATGGTATCAGTCTTTGATAATTCTCT
TGGCCAATGAAATTGTAATGAAAATTTTGGTGGATGATTCTCTATTAAAT
AATC
Gap gap included
Contig length 794
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4585223
End point 4585915
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U11925
List of clone(s) 

est1=CHQ553F,1,108
est2=SLC639F,109,786
est3=CHQ553Z,484,636
Translated Amino Acid sequence 
isvcik*i*k*qk****YFLKYYKIIFFFFXXLKKKXXX---

---DSFQGMT*iypmnliekvefyhddmkhqycnheslfprgssksnsldqrndwyrrsk
smshldf*nrinfslcfslspkclhypdqinaldplkcyryeiqq*sfyhlhpqynqlsm
lyvqliavi*nrhqiqlhlefqhrlisyhrylnyqhf*lyhgsrlrlgqlpfsidhaqsc
ngsieklgyldsllpmyysslqwyqsliillaneivmkilvddsllnn
Translated Amino Acid sequence (All Frames) 
Frame A:
isvcik*i*k*qk****YFLKYYKIIFFFFXXLKKKXXX---

---*ffsrndmnlsnefn*eg*ilsr*yetpil*sreplskgiiqiq*pgpkk*lvs*vq
ehvts*llksnkllsvfftltqvlalsrpnkcfgsfkmlsvrdptvkflplasti*svvn
virsidccnlksapdstslristsidfisslsklstfltlpw**tapwaitifnrsrsil
qrfn*kawisgfftahvl**ssmvsvfdnslgq*ncnenfgg*fsik*

Frame B:
srcalnkfrnnknnnnnif*niiklfffffxx*kkxxx---

---DSFQGMT*iypmnliekvefyhddmkhqycnheslfprgssksnsldqrndwyrrsk
smshldf*nrinfslcfslspkclhypdqinaldplkcyryeiqq*sfyhlhpqynqlsm
lyvqliavi*nrhqiqlhlefqhrlisyhrylnyqhf*lyhgsrlrlgqlpfsidhaqsc
ngsieklgyldsllpmyysslqwyqsliillaneivmkilvddsllnn

Frame C:
lgvh*inleitkiiiiiffkil*nyffffxxfkkkxxx---

---ilfke*hefiq*i*lrrlnfitmi*ntntvitrasfqgdhpnpiawtkemigivgpr
achiltfeie*tslcvfhshpsaciiqtk*mlwil*nvigtrsnskvsttcihniiscqc
ytfn*ll*feigtrfnft*nfnid*fhiivi*iinisnstmvvdcalgnyhfq*itlnla
tvqlksldiwilycpctivvfngisl**fswpmkl**kfwwmily*ii
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11925-1 (Contig-U11925-1Q)
/CSM_Contig/Contig-U11925-1Q.Seq.d
         (804 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Conti...  1342  0.0
Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U12084-1 (Contig-U12084-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U00705-1 (Contig-U00705-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U14457-1 (Contig-U14457-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U13373-1 (Contig-U13373-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U12517-1 (Contig-U12517-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U14747-1 (Contig-U14747-1Q) /CSM_Contig/Conti...    32  0.88

>Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Contig-U11925-1Q.Seq.d
          Length = 804

 Score = 1342 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Plus

                                                                       
Query: 128 tgattcttttcaaggaatgacatgaatttatccaatgaatttaattgagaaggttgaatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgattcttttcaaggaatgacatgaatttatccaatgaatttaattgagaaggttgaatt 187

                                                                       
Query: 188 ttatcacgatgatatgaaacaccaatactgtaatcacgagagcctctttccaaggggatc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttatcacgatgatatgaaacaccaatactgtaatcacgagagcctctttccaaggggatc 247

                                                                       
Query: 248 atccaaatccaatagcctggaccaaagaaatgattggtatcgtaggtccaagagcatgtc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atccaaatccaatagcctggaccaaagaaatgattggtatcgtaggtccaagagcatgtc 307

                                                                       
Query: 308 acatcttgacttttgaaatcgaataaacttctctctgtgtttttcactctcacccaagtg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acatcttgacttttgaaatcgaataaacttctctctgtgtttttcactctcacccaagtg 367

                                                                       
Query: 368 cttgcattatccagaccaaataaatgctttggatcctttaaaatgttatcggtacgagat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttgcattatccagaccaaataaatgctttggatcctttaaaatgttatcggtacgagat 427

                                                                       
Query: 428 ccaacagtaaagtttctaccacttgcatccacaatataatcagttgtcaatgttatacgt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccaacagtaaagtttctaccacttgcatccacaatataatcagttgtcaatgttatacgt 487

                                                                       
Query: 488 tcaattgattgctgtaatttgaaatcggcaccagattcaacttcacttagaatttcaaca 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcaattgattgctgtaatttgaaatcggcaccagattcaacttcacttagaatttcaaca 547

                                                                       
Query: 548 tcgattgatttcatatcatcgttatctaaattatcaacatttctaactctaccatggtag 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tcgattgatttcatatcatcgttatctaaattatcaacatttctaactctaccatggtag 607

                                                                       
Query: 608 tagactgcgccttgggcaattaccattttcaatagatcacgctcaatcttgcaacggttc 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tagactgcgccttgggcaattaccattttcaatagatcacgctcaatcttgcaacggttc 667

                                                                       
Query: 668 aattgaaaagcttggatatctggattctttactgcccatgtactatagtagtcttcaatg 727
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aattgaaaagcttggatatctggattctttactgcccatgtactatagtagtcttcaatg 727

                                                                       
Query: 728 gtatcagtctttgataattctcttggccaatgaaattgtaatgaaaattttggtggatga 787
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtatcagtctttgataattctcttggccaatgaaattgtaatgaaaattttggtggatga 787

                            
Query: 788 ttctctattaaataatc 804
           |||||||||||||||||
Sbjct: 788 ttctctattaaataatc 804


>Contig-U13680-1 (Contig-U13680-1Q) /CSM_Contig/Contig-U13680-1Q.Seq.d
          Length = 822

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 572 tctaaattatcaacatttctaact 595
           |||||||||||||||| |||||||
Sbjct: 94  tctaaattatcaacatatctaact 71


>Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Contig-U12095-1Q.Seq.d
          Length = 2532

 Score = 36.2 bits (18), Expect = 0.057
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 158 tccaatgaatttaattga 175
           ||||||||||||||||||
Sbjct: 543 tccaatgaatttaattga 526


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7155
Number of Sequences: 6905
Number of extensions: 7155
Number of successful extensions: 635
Number of sequences better than 10.0: 88
length of query: 804
length of database: 5,674,871
effective HSP length: 16
effective length of query: 788
effective length of database: 5,564,391
effective search space: 4384740108
effective search space used: 4384740108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Contig-U11925-1Q.Seq.d
         (804 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061019) Dictyostelium discoideum slug cDNA, clone SLC639.     1342   0.0    1
(BJ385630) Dictyostelium discoideum cDNA clone:ddc55i13, 3' ...   248   3e-61  1
(EI434122) PV_GBa0027C23.f PV_GBa Phaseolus vulgaris genomic...    50   0.13   1
(EC193402) SSE00003024 Streblomastix strix Non-normalized St...    48   0.51   1
(CT776609) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.51   1
(CT751530) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.51   1
(CT746308) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.51   1
(AM462595) Vitis vinifera contig VV78X187166.8, whole genome...    46   2.0    1
(AC213150) Populus trichocarpa clone POP009-N05, complete se...    46   2.0    1
(AC106850) Homo sapiens chromosome 11 clone CTD-2335F10 map ...    40   4.5    3
(AL356252) Human DNA sequence from clone RP11-468L10 on chro...    44   8.0    1
(AL139342) Human DNA sequence from clone RP5-1016N21 on chro...    44   8.0    1
(CU856071) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.0    1
(AC225471) Medicago truncatula clone mth2-176h19, WORKING DR...    44   8.0    1
(AC023957) Homo sapiens chromosome 13 clone RP11-349P1 map 1...    44   8.0    1
(DH300734) Oryzias latipes Fosmid clone:GOLWFno648_p02, forw...    44   8.0    1
(CT411746) Sus scrofa genomic clone CH242-468G19, genomic su...    44   8.0    1
(BU040052) PP_LEa0004L06f Peach developing fruit mesocarp Pr...    44   8.0    1

>(AU061019) Dictyostelium discoideum slug cDNA, clone SLC639.
          Length = 678

 Score = 1342 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Minus


Query: 128 tgattcttttcaaggaatgacatgaatttatccaatgaatttaattgagaaggttgaatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgattcttttcaaggaatgacatgaatttatccaatgaatttaattgagaaggttgaatt 618


Query: 188 ttatcacgatgatatgaaacaccaatactgtaatcacgagagcctctttccaaggggatc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttatcacgatgatatgaaacaccaatactgtaatcacgagagcctctttccaaggggatc 558


Query: 248 atccaaatccaatagcctggaccaaagaaatgattggtatcgtaggtccaagagcatgtc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atccaaatccaatagcctggaccaaagaaatgattggtatcgtaggtccaagagcatgtc 498


Query: 308 acatcttgacttttgaaatcgaataaacttctctctgtgtttttcactctcacccaagtg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatcttgacttttgaaatcgaataaacttctctctgtgtttttcactctcacccaagtg 438


Query: 368 cttgcattatccagaccaaataaatgctttggatcctttaaaatgttatcggtacgagat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cttgcattatccagaccaaataaatgctttggatcctttaaaatgttatcggtacgagat 378


Query: 428 ccaacagtaaagtttctaccacttgcatccacaatataatcagttgtcaatgttatacgt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccaacagtaaagtttctaccacttgcatccacaatataatcagttgtcaatgttatacgt 318


Query: 488 tcaattgattgctgtaatttgaaatcggcaccagattcaacttcacttagaatttcaaca 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcaattgattgctgtaatttgaaatcggcaccagattcaacttcacttagaatttcaaca 258


Query: 548 tcgattgatttcatatcatcgttatctaaattatcaacatttctaactctaccatggtag 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcgattgatttcatatcatcgttatctaaattatcaacatttctaactctaccatggtag 198


Query: 608 tagactgcgccttgggcaattaccattttcaatagatcacgctcaatcttgcaacggttc 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tagactgcgccttgggcaattaccattttcaatagatcacgctcaatcttgcaacggttc 138


Query: 668 aattgaaaagcttggatatctggattctttactgcccatgtactatagtagtcttcaatg 727
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aattgaaaagcttggatatctggattctttactgcccatgtactatagtagtcttcaatg 78


Query: 728 gtatcagtctttgataattctcttggccaatgaaattgtaatgaaaattttggtggatga 787
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  gtatcagtctttgataattctcttggccaatgaaattgtaatgaaaattttggtggatga 18


Query: 788 ttctctattaaataatc 804
           |||||||||||||||||
Sbjct: 17  ttctctattaaataatc 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 972,504,414
Number of extensions: 58917151
Number of successful extensions: 4708593
Number of sequences better than 10.0: 18
Length of query: 804
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 780
Effective length of database: 97,308,875,965
Effective search space: 75900923252700
Effective search space used: 75900923252700
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11925-1 (Contig-U11925-1Q) /CSM_Contig/Contig-U11925-1Q.Seq.d
         (804 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP009552_2776(AP009552|pid:none) Microcystis aeruginosa NIES-843...   212   1e-53
AM778943_95(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g...   202   1e-50
AM778943_97(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g...   199   9e-50
AM778943_96(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g...   191   2e-47
CP000442_353(CP000442|pid:none) Burkholderia ambifaria AMMD chro...    69   1e-10
AM920689_4234(AM920689|pid:none) Xanthomonas campestris pv. camp...    56   2e-06
AE008923_4032(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    55   4e-06
AM039952_4175(AM039952|pid:none) Xanthomonas campestris pv. vesi...    55   4e-06
CP000480_6553(CP000480|pid:none) Mycobacterium smegmatis str. MC...    52   3e-05
AP008229_424(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA...    51   5e-05
AM773662_2(AM773662|pid:none) Microcystis aeruginosa aerA-aerB r...    47   0.001
CU207211_2723(CU207211|pid:none) Herminiimonas arsenicoxydans ch...    46   0.002
AM773660_2(AM773660|pid:none) Microcystis aeruginosa aerA-aerB r...    46   0.002
AM778955_147(AM778955|pid:none) Microcystis aeruginosa PCC 7806 ...    45   0.002
AM773663_2(AM773663|pid:none) Microcystis aeruginosa aerA-aerB r...    45   0.004
AM773659_2(AM773659|pid:none) Microcystis aeruginosa aerA-aerB r...    44   0.008
CP001635_260(CP001635|pid:none) Variovorax paradoxus S110 chromo...    42   0.018
AM773664_2(AM773664|pid:none) Microcystis aeruginosa aerA-aerB r...    42   0.018
AM773676_2(AM773676|pid:none) Microcystis aeruginosa mcnC-mcnE r...    42   0.024
AM773675_2(AM773675|pid:none) Microcystis aeruginosa mcnC-mcnE r...    40   0.068
DQ075244_6(DQ075244|pid:none) Microcystis sp. NIVA-CYA 172/5 cya...    40   0.089
AB481216_2(AB481216|pid:none) Microcystis aeruginosa B-35 mipC, ...    40   0.089
CU207211_2716(CU207211|pid:none) Herminiimonas arsenicoxydans ch...    40   0.12
AJ269505_7(AJ269505|pid:none) Anabaena sp. ORF4 (partial), ORF3,...    39   0.20
CP000934_2930(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    37   0.58
CT573213_895(CT573213|pid:none) Frankia alni str. ACN14A chromos...    37   0.76
CU458896_2262(CU458896|pid:none) Mycobacterium abscessus chromos...    36   1.7
CT573213_4532(CT573213|pid:none) Frankia alni str. ACN14A chromo...    36   1.7
AM492533_41(AM492533|pid:none) Streptomyces tendae lysolipin bio...    36   1.7
AF334762_2(AF334762|pid:none) Campylobacter jejuni strain 2523/9...    35   2.9
BX908798_1128(BX908798|pid:none) Parachlamydia-related symbiont ...    34   4.9
CP001635_2926(CP001635|pid:none) Variovorax paradoxus S110 chrom...    34   6.4
AM238663_1257(AM238663|pid:none) Streptomyces ambofaciens ATCC 2...    34   6.4
AP007154_22(AP007154|pid:none) Aspergillus oryzae RIB40 genomic ...    34   6.4
(Q6D0F8) RecName: Full=HTH-type transcriptional regulator sgrR; ...    33   8.3
CP000116_2763(CP000116|pid:none) Thiobacillus denitrificans ATCC...    33   8.4

>AP009552_2776(AP009552|pid:none) Microcystis aeruginosa NIES-843
           DNA, complete genome.
          Length = 598

 Score =  212 bits (539), Expect = 1e-53
 Identities = 101/227 (44%), Positives = 144/227 (63%), Gaps = 2/227 (0%)
 Frame = -1

Query: 804 DYLIENHPPKFSLQFHWPRELSKTDTIEDYYSTWAVKNPDIQAFQLNRCKIERDLLKMVI 625
           +Y+IENHPPKF L FHWP++  KT T +DYY  W  + P + +FQ+NR K ERDLLKM
Sbjct: 73  EYMIENHPPKFGLNFHWPKKKDKTTTTDDYYHIWNNRQPPLASFQMNRAKFERDLLKMNK 132

Query: 624 AQGAVYYHGXXXXXXXXXXXDMKSIDVEILSEVESGADFKLQQSIERITLTTDYIVDASG 445
           A GA +Y G             + +DV++ S+ E        ++ E+ITL   +++DA+G
Sbjct: 133 AMGATFYQG-------------RVVDVDLTSKDELKTVIAKVEN-EQITLKAKHVIDAAG 178

Query: 444 RNFTVGSRTDNILKDPKHLFGLDNASTWVRVKNTERSLF--DFKSQDVTCSWTYDTNHFF 271
           R F +G +TDN+L    +LFGLD  S WVRV N +R++F   +     TCS  Y TNH+F
Sbjct: 179 RKFIIGQKTDNLLFGADNLFGLDTGSVWVRVNNIDRTIFHDGYDPYGTTCSHYYATNHWF 238

Query: 270 GPGYWIWMIPLERGSRDYSIGVSYHRDKIQPSQLNSLDKFMSFLEKN 130
           G G+W+WMIP E+ S++ SIG++YHR  I   Q+N+ +KF +FL+ N
Sbjct: 239 GHGHWLWMIPTEKDSQEISIGIAYHRSAIADKQINTKEKFYAFLKAN 285

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,224,360,548
Number of extensions: 25631395
Number of successful extensions: 55682
Number of sequences better than 10.0: 36
Number of HSP's gapped: 55651
Number of HSP's successfully gapped: 37
Length of query: 268
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 142
Effective length of database: 643,374,430
Effective search space: 91359169060
Effective search space used: 91359169060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.97  gvh: 0.39  alm: 0.47  top: 0.60  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U11925-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0