Contig-U11911-1
Contig ID Contig-U11911-1
Contig update 2002.12.18
Contig sequence
>Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Contig-U11911-1Q.Seq.d
CACTGTTGGCCTACTGGCAATAAAGACAACAACAACAACAACTACAATGT
CATACAATAATAACAGCAACGAAGCTGAAAATTATTTTGAAGATTTCGAT
GCTGCCCCATTAGATGAAGATGCGCCATATGATGATGATGAAACATTTGG
TGATACAGGTCCTCTAAATGATGAATGGGAAAATCAACATACTTTATTAT
CAGGAGAACATGAATCATTCTTAACACAAAATAAATTAAGAGAACAATCA
GACATTCAAGAAGGTTATAGTAATGGCGTTAATCAACATAACGATGAAGA
TGAAGATGAAGAAGATTATAATACTTACAAACAATCTAGATTTACAAATG
GTGGTAGAGATGTTAGACATTTTACTCAATCTTCAACTACTACAACTACA
ACAACAACTAGTACAACAACTACTAAAACTTCATTAAATAATAATAATAT
AAATAATAATAATATAAATTTAGATGATGATCATGGACAATTGGATGATC
ATTTAGAATCAGTATTTAAGATTGTGGATGATTCAAAAGATAATAGTAAT
AATAATAATAATGATATTAATAAAATAATGGGATTAATGGGTGGTATTTC
AGTCAATGGTAATGTTGATAGTGAGGGATTATCAAGTAAAGGATTATCAT
TATCAGATATTGAA----------NNNNNNNNNNATACTCAACAACCAAC
TTTAGAATTAACTCNAATATNTCAATTATTAATTGGTCATNGTAATGAAC
AACAAACTCAAATTTTTCATTTAGAATTAGGTAATATTCAACAAAAACAA
CAACAACAAAAACAACAACAACAACAATTGCCATCATCNACANCCACAAC

Gap gap included
Contig length 840
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1755546
End point 1756358
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U11911
List of clone(s)

est1=VHP704F,0,586
est2=CHP781F,1,600
est3=CHM717F,15,627
est4=CHO564F,23,664
est5=CHP781Z,665,831
Translated Amino Acid sequence
TVGLLAIKTTTTTTTMSYNNNSNEAENYFEDFDAAPLDEDAPYDDDETFGDTGPLNDEWE
NQHTLLSGEHESFLTQNKLREQSDIQEGYSNGVNQHNDEDEDEEDYNTYKQSRFTNGGRD
VRHFTQSSTTTTTTTTSTTTTKTSLNNNNINNNNINLDDDHGQLDDHLESVFKIVDDSKD
NSNNNNNDINKIMGLMGGISVNGNVDSEGLSSKGLSLSDIE---

---XXXXTQQPTLELTXIXQLLIGHXNEQQTQIFHLELGNIQQKQQQQKQQQQQLPSSTX
T


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgnkdnnnnnynviq**qqrs*klf*rfrccpir*rcai****niw*yrssk**mg
kstyfiirrt*iilntk*ikrtirhsrrl**wr*st*r*r*r*rrl*ylqti*iykww*r
c*tfysifnyynynnn*ynny*nfik***yk***ykfr**swtig*sfrisi*dcg*fkr
********y**nngingwyfsqw*c***giik*riiiiry*---

---XXXXTQQPTLELTXIXQLLIGHXNEQQTQIFHLELGNIQQKQQQQKQQQQQLPSSTX
T

Frame B:
TVGLLAIKTTTTTTTMSYNNNSNEAENYFEDFDAAPLDEDAPYDDDETFGDTGPLNDEWE
NQHTLLSGEHESFLTQNKLREQSDIQEGYSNGVNQHNDEDEDEEDYNTYKQSRFTNGGRD
VRHFTQSSTTTTTTTTSTTTTKTSLNNNNINNNNINLDDDHGQLDDHLESVFKIVDDSKD
NSNNNNNDINKIMGLMGGISVNGNVDSEGLSSKGLSLSDIE---

---xxxilnnql*n*lxyxny*lvxvmnnklkffi*n*vifnknnnnknnnnnnchhxxp
q

Frame C:
llaywq*rqqqqqlqchtiitatklkiilkismlph*mkmrhmmmmkhlviqvl*mmngk
inilyyqenmnhs*hkin*ennqtfkkvivmalinitmkmkmkkiiiltnnldlqmvvem
ldillnlqllqlqqqlvqqllklh*iiii*iiii*i*mmimdnwmii*nqylrlwmiqki
iviiiimilik*wd*wvvfqsmvmlivrdyqvkdyhyqil---

---xxxysttnfrinsnxsiinwsx**ttnsnfsfrir*ystkttttktttttiaiixxh
n

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11911-1 (Contig-U11911-1Q)
/CSM_Contig/Contig-U11911-1Q.Seq.d
(850 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Conti... 678 0.0
Contig-U12038-1 (Contig-U12038-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U10062-1 (Contig-U10062-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U13217-1 (Contig-U13217-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12917-1 (Contig-U12917-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11142-1 (Contig-U11142-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U06491-1 (Contig-U06491-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12772-1 (Contig-U12772-1Q) /CSM_Contig/Conti... 36 0.060

>Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Contig-U11911-1Q.Seq.d
Length = 850

Score = 678 bits (342), Expect = 0.0
Identities = 342/342 (100%)
Strand = Plus / Plus


Query: 43 tacaatgtcatacaataataacagcaacgaagctgaaaattattttgaagatttcgatgc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 tacaatgtcatacaataataacagcaacgaagctgaaaattattttgaagatttcgatgc 102


Query: 103 tgccccattagatgaagatgcgccatatgatgatgatgaaacatttggtgatacaggtcc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tgccccattagatgaagatgcgccatatgatgatgatgaaacatttggtgatacaggtcc 162


Query: 163 tctaaatgatgaatgggaaaatcaacatactttattatcaggagaacatgaatcattctt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tctaaatgatgaatgggaaaatcaacatactttattatcaggagaacatgaatcattctt 222


Query: 223 aacacaaaataaattaagagaacaatcagacattcaagaaggttatagtaatggcgttaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aacacaaaataaattaagagaacaatcagacattcaagaaggttatagtaatggcgttaa 282


Query: 283 tcaacataacgatgaagatgaagatgaagaagattataatacttacaaacaatctagatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcaacataacgatgaagatgaagatgaagaagattataatacttacaaacaatctagatt 342


Query: 343 tacaaatggtggtagagatgttagacattttactcaatcttc 384
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tacaaatggtggtagagatgttagacattttactcaatcttc 384


Score = 188 bits (95), Expect = 7e-48
Identities = 104/104 (100%)
Strand = Plus / Plus


Query: 685 atactcaacaaccaactttagaattaactcnaatatntcaattattaattggtcatngta 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atactcaacaaccaactttagaattaactcnaatatntcaattattaattggtcatngta 744


Query: 745 atgaacaacaaactcaaatttttcatttagaattaggtaatatt 788
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgaacaacaaactcaaatttttcatttagaattaggtaatatt 788


Score = 168 bits (85), Expect = 6e-42
Identities = 85/85 (100%)
Strand = Plus / Plus


Query: 580 gggattaatgggtggtatttcagtcaatggtaatgttgatagtgagggattatcaagtaa 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gggattaatgggtggtatttcagtcaatggtaatgttgatagtgagggattatcaagtaa 639


Query: 640 aggattatcattatcagatattgaa 664
|||||||||||||||||||||||||
Sbjct: 640 aggattatcattatcagatattgaa 664


Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus


Query: 468 atttagatgatgatcatggacaattggatgatcatttagaatcagtatttaagattgtgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atttagatgatgatcatggacaattggatgatcatttagaatcagtatttaagattgtgg 527


Query: 528 atgattcaaaag 539
||||||||||||
Sbjct: 528 atgattcaaaag 539


Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggcaataaag 25
|||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggcaataaag 25


Score = 34.2 bits (17), Expect = 0.24
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 828 ttgccatcatcnacanccacaac 850
|||||||||||||||||||||||
Sbjct: 828 ttgccatcatcnacanccacaac 850


>Contig-U12038-1 (Contig-U12038-1Q) /CSM_Contig/Contig-U12038-1Q.Seq.d
Length = 1252

Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 2 actgttggcctactggcaataaa 24
|||||||||||||||||||||||
Sbjct: 1 actgttggcctactggcaataaa 23


>Contig-U10351-1 (Contig-U10351-1Q) /CSM_Contig/Contig-U10351-1Q.Seq.d
Length = 1242

Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 293 gatgaagatgaagatgaagaaga 315
|||||||||||||||||||||||
Sbjct: 245 gatgaagatgaagatgaagaaga 267


Score = 32.2 bits (16), Expect = 0.93
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 297 aagatgaagatgaaga 312
||||||||||||||||
Sbjct: 243 aagatgaagatgaaga 258


Score = 30.2 bits (15), Expect = 3.7
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 293 gatgaagatgaagatgaagaaga 315
|||||||||||||| ||| ||||
Sbjct: 251 gatgaagatgaagaagaaaaaga 273


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,571
Number of Sequences: 6905
Number of extensions: 12571
Number of successful extensions: 2884
Number of sequences better than 10.0: 639
length of query: 850
length of database: 5,674,871
effective HSP length: 16
effective length of query: 834
effective length of database: 5,564,391
effective search space: 4640702094
effective search space used: 4640702094
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA
Query= Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Contig-U11911-1Q.Seq.d
(850 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ369772) Dictyostelium discoideum cDNA clone:ddc51o15, 5' ... 676 0.0 3
(BJ368505) Dictyostelium discoideum cDNA clone:ddc47b05, 5' ... 676 0.0 3
(BJ370330) Dictyostelium discoideum cDNA clone:ddc53b21, 5' ... 676 0.0 4
(BJ427334) Dictyostelium discoideum cDNA clone:ddv62h01, 5' ... 676 0.0 2
(BJ383646) Dictyostelium discoideum cDNA clone:ddc53b21, 3' ... 188 2e-47 2
(CK249786) EST733423 potato callus cDNA library, normalized ... 46 4e-04 3
(CK249616) EST733253 potato callus cDNA library, normalized ... 46 4e-04 3
(CK255025) EST738662 potato callus cDNA library, normalized ... 46 5e-04 3
(CK252677) EST736314 potato callus cDNA library, normalized ... 46 8e-04 3
(CK255924) EST739561 potato callus cDNA library, normalized ... 46 0.001 3
(DY893370) CeleSEQ12694 Cunninghamella elegans pBluescript (... 38 0.001 3
(CK253890) EST737527 potato callus cDNA library, normalized ... 46 0.001 3
(BJ416332) Dictyostelium discoideum cDNA clone:ddv25g22, 5' ... 42 0.001 3
(EH764031) CNSM10038.b1_K13.ab1 CNS(LMS) yellow starthistle ... 50 0.002 2
(EH750666) CNSL10019.b1_E09.ab1 CNS(LMS) yellow starthistle ... 50 0.002 2
(BG524501) 43-28 Stevia field grown leaf cDNA Stevia rebaudi... 54 0.009 1
(DB705377) Solanum lycopersicum cDNA, clone: LEFL1088BH07, 5... 46 0.009 2
(DB690992) Solanum lycopersicum cDNA, clone: LEFL1040DH12, 5... 46 0.012 2
(DB689772) Solanum lycopersicum cDNA, clone: LEFL1037AC07, 5... 46 0.013 2
(DB699763) Solanum lycopersicum cDNA, clone: LEFL1068BC03, 5... 46 0.018 2
(DB701848) Solanum lycopersicum cDNA, clone: LEFL1074DG08, 5... 46 0.020 2
(BQ147628) NF044H03FL1F1031 Developing flower Medicago trunc... 46 0.020 2
(BQ141532) NF020E09PH1F1071 Phoma-infected Medicago truncatu... 46 0.021 2
(DB685568) Solanum lycopersicum cDNA, clone: LEFL1023CB06, 5... 46 0.022 2
(DB701959) Solanum lycopersicum cDNA, clone: LEFL1075BB01, 5... 46 0.023 2
(AI415981) fb30e12.y1 Zebrafish WashU MPIMG EST Danio rerio ... 48 0.023 2
(EG478452) AYAOS48TR pooled cDNA populations Arabidopsis tha... 48 0.024 2
(EG478973) AYAOS44TF pooled cDNA populations Arabidopsis tha... 48 0.024 2
(DB682157) Solanum lycopersicum cDNA, clone: LEFL1012DA05, 5... 46 0.025 2
(DB714844) Solanum lycopersicum cDNA, clone: LEFL2018G14, 5'... 46 0.026 2
(DB713740) Solanum lycopersicum cDNA, clone: LEFL2014P15, 5'... 46 0.026 2
(DB716541) Solanum lycopersicum cDNA, clone: LEFL2023F18, 5'... 46 0.027 2
(EG478962) AYAOS39TF pooled cDNA populations Arabidopsis tha... 48 0.033 2
(DU689245) Bst021775 lambda03 Boechera stricta genomic clone... 48 0.034 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 52 0.035 1
(BG525195) 45-51 Stevia field grown leaf cDNA Stevia rebaudi... 52 0.035 1
(AY395038) Schistosoma mansoni thyroid hormone receptor alph... 40 0.043 4
(BE324297) NF020H10PL1F1089 Phosphate starved leaf Medicago ... 46 0.046 2
(AW127600) M110331 DSLC Medicago truncatula cDNA clone L130,... 46 0.047 2
(CJ467825) Macaca fascicularis mRNA, clone: QnpA-17460, 5' e... 36 0.048 3
(BI270764) NF001F03FL1F1031 Developing flower Medicago trunc... 46 0.049 2
(CJ488328) Macaca fascicularis mRNA, clone: QtsA-16033, 5' e... 42 0.050 3
(BE316876) NF067H06LF1F1048 Developing leaf Medicago truncat... 46 0.051 2
(BQ858872) QGC11H15.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 46 0.056 2
(BQ156400) NF092D08IR1F1074 Irradiated Medicago truncatula c... 46 0.057 2
(BG451958) NF043D11DT1F1091 Drought Medicago truncatula cDNA... 46 0.058 2
(AJ502575) Medicago truncatula EST, clone mtgmadc120022f09. 46 0.058 2
(CX542511) s13dNF57C05GS038_474240 Germinating Seed Medicago... 46 0.060 2
(CB359431) ZF001-P00027-DPE-F-A_A10 GISZF001 Danio rerio cDN... 48 0.061 2
(BI269705) NF013G09IR1F1071 Irradiated Medicago truncatula c... 46 0.061 2
(BQ157420) NF104F04IR1F1043 Irradiated Medicago truncatula c... 46 0.061 2
(EV261138) MTYEG06TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 0.063 2
(EX527186) MTGland-A073_2007-08-21/MTGland-73_O04_001_1 Medi... 46 0.064 2
(BI272957) NF092C12FL1F1097 Developing flower Medicago trunc... 46 0.064 2
(EC586647) H_H19_F04_12 H Rosa hybrid cultivar cDNA clone H1... 48 0.064 2
(BI269238) NF005E06IR1F1050 Irradiated Medicago truncatula c... 46 0.065 2
(BG455869) NF070A01PL1F1003 Phosphate starved leaf Medicago ... 46 0.065 2
(CX540094) s13dNF46G01GS004_463460 Germinating Seed Medicago... 46 0.066 2
(BQ155662) NF082H06IR1F1060 Irradiated Medicago truncatula c... 46 0.066 2
(EX530761) MTGland_B013_2007-05-08/MTGlandB013_A06_024_1 Med... 46 0.067 2
(BQ155651) NF082G07IR1F1056 Irradiated Medicago truncatula c... 46 0.069 2
(CI040757) Oryza sativa Japonica Group cDNA, clone: 009-M198... 40 0.069 2
(BQ154417) NF069F05IR1F1047 Irradiated Medicago truncatula c... 46 0.069 2
(BI270013) NF003C04FL1F1034 Developing flower Medicago trunc... 46 0.070 2
(AM647206) Entamoeba moshkovskii FIC GSS, clone mosh047f09.q1k. 44 0.076 2
(DW015738) EST1224699 MTY Medicago truncatula cDNA clone MTY... 46 0.077 2
(BF643524) NF021F09EC1F1079 Elicited cell culture Medicago t... 46 0.079 2
(CK255584) EST739221 potato callus cDNA library, normalized ... 46 0.079 2
(BF647644) NF078B01EC1F1011 Elicited cell culture Medicago t... 46 0.080 2
(BQ154562) NF073G04IR1F1036 Irradiated Medicago truncatula c... 46 0.081 2
(CI038418) Oryza sativa Japonica Group cDNA, clone: 009-M171... 40 0.082 2
(BE942232) EST421811 MGHG Medicago truncatula cDNA clone pMG... 46 0.083 2
(BQ154789) NF108C04IR1F1034 Irradiated Medicago truncatula c... 46 0.085 2
(DW016041) EST1225002 MTY Medicago truncatula cDNA clone MTY... 46 0.085 2
(BF643707) NF021G06EC1F1052 Elicited cell culture Medicago t... 46 0.086 2
(BQ136068) NF032G12EC1F1099 Elicited cell culture Medicago t... 46 0.086 2
(BG457507) NF105A07PL1F1051 Phosphate starved leaf Medicago ... 46 0.091 2
(AW688650) NF010A09ST1F1000 Developing stem Medicago truncat... 46 0.091 2
(EV256857) MTYD167TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 0.091 2
(DW107615) CLRX5113.b1_B07.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.092 2
(BQ156751) NF096G01IR1F1008 Irradiated Medicago truncatula c... 46 0.092 2
(EV255785) MTYCO82TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 0.093 2
(AY735566) Arabidopsis thaliana hypothetical protein AT1G751... 48 0.093 2
(ES613656) MTGland_B012_2007-05-11/MTGlandB012_A09_040_1 Med... 46 0.096 2
(BQ867133) QGC9O01.yg.ab1 QG_ABCDI lettuce salinas Lactuca s... 46 0.10 2
(BQ156461) NF093B03IR1F1029 Irradiated Medicago truncatula c... 46 0.10 2
(AM053589) Epidinium ecaudatum EST, clone Eec05_C07. 40 0.11 2
(CJ469180) Macaca fascicularis mRNA, clone: QnpA-19396, 5' e... 40 0.11 2
(EK470199) 1095469447714 Global-Ocean-Sampling_GS-32-01-01-1... 46 0.12 2
(CO958154) AGENCOURT_30801352 NIH_ZGC_5 Danio rerio cDNA clo... 46 0.12 2
(DW115819) CLRY3953.b2_B05.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.12 2
(BQ150787) NF057F09LF1F1075 Developing leaf Medicago truncat... 46 0.12 2
(AZ546009) ENTFW53TF Entamoeba histolytica Sheared DNA Entam... 46 0.12 2
(DE929025) Macropus eugenii DNA, BAC clone: MEB1-119C04_F, 5... 46 0.12 2
(AZ550256) ENTEV58TR Entamoeba histolytica Sheared DNA Entam... 46 0.12 2
(DW848017) MSAM302455_1720_1984 LCM-dissected maize shoot ap... 44 0.13 2
(CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 50 0.14 1
(AY563020) Plasmodium yoelii killicki isolate 194ZZ merozoit... 50 0.14 1
(AY563019) Plasmodium yoelii killicki isolate 193L merozoite... 50 0.14 1
(AZ916741) 4911.fd62i12.s1 Saccharomyces bayanus MCYC 623-6C... 50 0.14 1

>(BJ369772) Dictyostelium discoideum cDNA clone:ddc51o15, 5' end,
single read.
Length = 642

Score = 676 bits (341), Expect(3) = 0.0
Identities = 341/341 (100%)
Strand = Plus / Plus


Query: 43 tacaatgtcatacaataataacagcaacgaagctgaaaattattttgaagatttcgatgc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tacaatgtcatacaataataacagcaacgaagctgaaaattattttgaagatttcgatgc 80


Query: 103 tgccccattagatgaagatgcgccatatgatgatgatgaaacatttggtgatacaggtcc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgccccattagatgaagatgcgccatatgatgatgatgaaacatttggtgatacaggtcc 140


Query: 163 tctaaatgatgaatgggaaaatcaacatactttattatcaggagaacatgaatcattctt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tctaaatgatgaatgggaaaatcaacatactttattatcaggagaacatgaatcattctt 200


Query: 223 aacacaaaataaattaagagaacaatcagacattcaagaaggttatagtaatggcgttaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacaaaataaattaagagaacaatcagacattcaagaaggttatagtaatggcgttaa 260


Query: 283 tcaacataacgatgaagatgaagatgaagaagattataatacttacaaacaatctagatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaacataacgatgaagatgaagatgaagaagattataatacttacaaacaatctagatt 320


Query: 343 tacaaatggtggtagagatgttagacattttactcaatctt 383
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaatggtggtagagatgttagacattttactcaatctt 361

Score = 168 bits (85), Expect(3) = 0.0
Identities = 85/85 (100%)
Strand = Plus / Plus


Query: 580 gggattaatgggtggtatttcagtcaatggtaatgttgatagtgagggattatcaagtaa 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gggattaatgggtggtatttcagtcaatggtaatgttgatagtgagggattatcaagtaa 617


Query: 640 aggattatcattatcagatattgaa 664
|||||||||||||||||||||||||
Sbjct: 618 aggattatcattatcagatattgaa 642

Score = 139 bits (70), Expect(3) = 0.0
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 470 ttagatgatgatcatggacaattggatgatcatttagaatcagtatttaagattgtggat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttagatgatgatcatggacaattggatgatcatttagaatcagtatttaagattgtggat 507


Query: 530 gattcaaaag 539
||||||||||
Sbjct: 508 gattcaaaag 517

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 709,867,482
Number of extensions: 45910600
Number of successful extensions: 4956651
Number of sequences better than 10.0: 1438
Length of query: 850
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 826
Effective length of database: 97,308,875,965
Effective search space: 80377131547090
Effective search space used: 80377131547090
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Contig-U11911-1Q.Seq.d
(850 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CU928175_643(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 37 0.63
AM295250_2418(AM295250|pid:none) Staphylococcus carnosus subsp. ... 37 0.63

>CU928175_643(CU928175|pid:none) Zygosaccharomyces rouxii strain
CBS732 chromosome C complete sequence.
Length = 1500

Score = 37.4 bits (85), Expect = 0.63
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2

Query: 86 FEDFDAAPLDEDAPYDDDETFGDTGPLNDEWENQHTLLS---GEHESFLTQNKLREQSDI 256
F+D+ DED +DD+E +G ++D EN H L S EH S L + R +D+
Sbjct: 652 FDDYSDYDQDEDEEFDDEEGYGAKSEIDD--ENDHELASEYDDEHNSCLHDHHNRGHADV 709

Query: 257 Q 259
+
Sbjct: 710 E 710

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 684,279,725
Number of extensions: 10293965
Number of successful extensions: 17970
Number of sequences better than 10.0: 2
Number of HSP's gapped: 17873
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 156
Effective length of database: 640,137,871
Effective search space: 99861507876
Effective search space used: 99861507876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.88 gvh: 0.39 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: mitochondrial
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for Contig-U11911-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0