Contig-U11911-1 |
Contig ID |
Contig-U11911-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
840 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1755546 |
End point |
1756358 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
4 |
Number of EST |
5 |
Link to clone list |
U11911 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.27 |
Homology vs DNA |
Query= Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Contig-U11911-1Q.Seq.d (850 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ369772) Dictyostelium discoideum cDNA clone:ddc51o15, 5' ... 676 0.0 3 (BJ368505) Dictyostelium discoideum cDNA clone:ddc47b05, 5' ... 676 0.0 3 (BJ370330) Dictyostelium discoideum cDNA clone:ddc53b21, 5' ... 676 0.0 4 (BJ427334) Dictyostelium discoideum cDNA clone:ddv62h01, 5' ... 676 0.0 2 (BJ383646) Dictyostelium discoideum cDNA clone:ddc53b21, 3' ... 188 2e-47 2 (CK249786) EST733423 potato callus cDNA library, normalized ... 46 4e-04 3 (CK249616) EST733253 potato callus cDNA library, normalized ... 46 4e-04 3 (CK255025) EST738662 potato callus cDNA library, normalized ... 46 5e-04 3 (CK252677) EST736314 potato callus cDNA library, normalized ... 46 8e-04 3 (CK255924) EST739561 potato callus cDNA library, normalized ... 46 0.001 3 (DY893370) CeleSEQ12694 Cunninghamella elegans pBluescript (... 38 0.001 3 (CK253890) EST737527 potato callus cDNA library, normalized ... 46 0.001 3 (BJ416332) Dictyostelium discoideum cDNA clone:ddv25g22, 5' ... 42 0.001 3 (EH764031) CNSM10038.b1_K13.ab1 CNS(LMS) yellow starthistle ... 50 0.002 2 (EH750666) CNSL10019.b1_E09.ab1 CNS(LMS) yellow starthistle ... 50 0.002 2 (BG524501) 43-28 Stevia field grown leaf cDNA Stevia rebaudi... 54 0.009 1 (DB705377) Solanum lycopersicum cDNA, clone: LEFL1088BH07, 5... 46 0.009 2 (DB690992) Solanum lycopersicum cDNA, clone: LEFL1040DH12, 5... 46 0.012 2 (DB689772) Solanum lycopersicum cDNA, clone: LEFL1037AC07, 5... 46 0.013 2 (DB699763) Solanum lycopersicum cDNA, clone: LEFL1068BC03, 5... 46 0.018 2 (DB701848) Solanum lycopersicum cDNA, clone: LEFL1074DG08, 5... 46 0.020 2 (BQ147628) NF044H03FL1F1031 Developing flower Medicago trunc... 46 0.020 2 (BQ141532) NF020E09PH1F1071 Phoma-infected Medicago truncatu... 46 0.021 2 (DB685568) Solanum lycopersicum cDNA, clone: LEFL1023CB06, 5... 46 0.022 2 (DB701959) Solanum lycopersicum cDNA, clone: LEFL1075BB01, 5... 46 0.023 2 (AI415981) fb30e12.y1 Zebrafish WashU MPIMG EST Danio rerio ... 48 0.023 2 (EG478452) AYAOS48TR pooled cDNA populations Arabidopsis tha... 48 0.024 2 (EG478973) AYAOS44TF pooled cDNA populations Arabidopsis tha... 48 0.024 2 (DB682157) Solanum lycopersicum cDNA, clone: LEFL1012DA05, 5... 46 0.025 2 (DB714844) Solanum lycopersicum cDNA, clone: LEFL2018G14, 5'... 46 0.026 2 (DB713740) Solanum lycopersicum cDNA, clone: LEFL2014P15, 5'... 46 0.026 2 (DB716541) Solanum lycopersicum cDNA, clone: LEFL2023F18, 5'... 46 0.027 2 (EG478962) AYAOS39TF pooled cDNA populations Arabidopsis tha... 48 0.033 2 (DU689245) Bst021775 lambda03 Boechera stricta genomic clone... 48 0.034 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 52 0.035 1 (BG525195) 45-51 Stevia field grown leaf cDNA Stevia rebaudi... 52 0.035 1 (AY395038) Schistosoma mansoni thyroid hormone receptor alph... 40 0.043 4 (BE324297) NF020H10PL1F1089 Phosphate starved leaf Medicago ... 46 0.046 2 (AW127600) M110331 DSLC Medicago truncatula cDNA clone L130,... 46 0.047 2 (CJ467825) Macaca fascicularis mRNA, clone: QnpA-17460, 5' e... 36 0.048 3 (BI270764) NF001F03FL1F1031 Developing flower Medicago trunc... 46 0.049 2 (CJ488328) Macaca fascicularis mRNA, clone: QtsA-16033, 5' e... 42 0.050 3 (BE316876) NF067H06LF1F1048 Developing leaf Medicago truncat... 46 0.051 2 (BQ858872) QGC11H15.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 46 0.056 2 (BQ156400) NF092D08IR1F1074 Irradiated Medicago truncatula c... 46 0.057 2 (BG451958) NF043D11DT1F1091 Drought Medicago truncatula cDNA... 46 0.058 2 (AJ502575) Medicago truncatula EST, clone mtgmadc120022f09. 46 0.058 2 (CX542511) s13dNF57C05GS038_474240 Germinating Seed Medicago... 46 0.060 2 (CB359431) ZF001-P00027-DPE-F-A_A10 GISZF001 Danio rerio cDN... 48 0.061 2 (BI269705) NF013G09IR1F1071 Irradiated Medicago truncatula c... 46 0.061 2 (BQ157420) NF104F04IR1F1043 Irradiated Medicago truncatula c... 46 0.061 2 (EV261138) MTYEG06TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 0.063 2 (EX527186) MTGland-A073_2007-08-21/MTGland-73_O04_001_1 Medi... 46 0.064 2 (BI272957) NF092C12FL1F1097 Developing flower Medicago trunc... 46 0.064 2 (EC586647) H_H19_F04_12 H Rosa hybrid cultivar cDNA clone H1... 48 0.064 2 (BI269238) NF005E06IR1F1050 Irradiated Medicago truncatula c... 46 0.065 2 (BG455869) NF070A01PL1F1003 Phosphate starved leaf Medicago ... 46 0.065 2 (CX540094) s13dNF46G01GS004_463460 Germinating Seed Medicago... 46 0.066 2 (BQ155662) NF082H06IR1F1060 Irradiated Medicago truncatula c... 46 0.066 2 (EX530761) MTGland_B013_2007-05-08/MTGlandB013_A06_024_1 Med... 46 0.067 2 (BQ155651) NF082G07IR1F1056 Irradiated Medicago truncatula c... 46 0.069 2 (CI040757) Oryza sativa Japonica Group cDNA, clone: 009-M198... 40 0.069 2 (BQ154417) NF069F05IR1F1047 Irradiated Medicago truncatula c... 46 0.069 2 (BI270013) NF003C04FL1F1034 Developing flower Medicago trunc... 46 0.070 2 (AM647206) Entamoeba moshkovskii FIC GSS, clone mosh047f09.q1k. 44 0.076 2 (DW015738) EST1224699 MTY Medicago truncatula cDNA clone MTY... 46 0.077 2 (BF643524) NF021F09EC1F1079 Elicited cell culture Medicago t... 46 0.079 2 (CK255584) EST739221 potato callus cDNA library, normalized ... 46 0.079 2 (BF647644) NF078B01EC1F1011 Elicited cell culture Medicago t... 46 0.080 2 (BQ154562) NF073G04IR1F1036 Irradiated Medicago truncatula c... 46 0.081 2 (CI038418) Oryza sativa Japonica Group cDNA, clone: 009-M171... 40 0.082 2 (BE942232) EST421811 MGHG Medicago truncatula cDNA clone pMG... 46 0.083 2 (BQ154789) NF108C04IR1F1034 Irradiated Medicago truncatula c... 46 0.085 2 (DW016041) EST1225002 MTY Medicago truncatula cDNA clone MTY... 46 0.085 2 (BF643707) NF021G06EC1F1052 Elicited cell culture Medicago t... 46 0.086 2 (BQ136068) NF032G12EC1F1099 Elicited cell culture Medicago t... 46 0.086 2 (BG457507) NF105A07PL1F1051 Phosphate starved leaf Medicago ... 46 0.091 2 (AW688650) NF010A09ST1F1000 Developing stem Medicago truncat... 46 0.091 2 (EV256857) MTYD167TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 0.091 2 (DW107615) CLRX5113.b1_B07.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.092 2 (BQ156751) NF096G01IR1F1008 Irradiated Medicago truncatula c... 46 0.092 2 (EV255785) MTYCO82TF JCVI-MT1 Medicago truncatula cDNA 5', m... 46 0.093 2 (AY735566) Arabidopsis thaliana hypothetical protein AT1G751... 48 0.093 2 (ES613656) MTGland_B012_2007-05-11/MTGlandB012_A09_040_1 Med... 46 0.096 2 (BQ867133) QGC9O01.yg.ab1 QG_ABCDI lettuce salinas Lactuca s... 46 0.10 2 (BQ156461) NF093B03IR1F1029 Irradiated Medicago truncatula c... 46 0.10 2 (AM053589) Epidinium ecaudatum EST, clone Eec05_C07. 40 0.11 2 (CJ469180) Macaca fascicularis mRNA, clone: QnpA-19396, 5' e... 40 0.11 2 (EK470199) 1095469447714 Global-Ocean-Sampling_GS-32-01-01-1... 46 0.12 2 (CO958154) AGENCOURT_30801352 NIH_ZGC_5 Danio rerio cDNA clo... 46 0.12 2 (DW115819) CLRY3953.b2_B05.ab1 CLR(XYZ) lettuce serriola Lac... 46 0.12 2 (BQ150787) NF057F09LF1F1075 Developing leaf Medicago truncat... 46 0.12 2 (AZ546009) ENTFW53TF Entamoeba histolytica Sheared DNA Entam... 46 0.12 2 (DE929025) Macropus eugenii DNA, BAC clone: MEB1-119C04_F, 5... 46 0.12 2 (AZ550256) ENTEV58TR Entamoeba histolytica Sheared DNA Entam... 46 0.12 2 (DW848017) MSAM302455_1720_1984 LCM-dissected maize shoot ap... 44 0.13 2 (CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 50 0.14 1 (AY563020) Plasmodium yoelii killicki isolate 194ZZ merozoit... 50 0.14 1 (AY563019) Plasmodium yoelii killicki isolate 193L merozoite... 50 0.14 1 (AZ916741) 4911.fd62i12.s1 Saccharomyces bayanus MCYC 623-6C... 50 0.14 1
>(BJ369772) Dictyostelium discoideum cDNA clone:ddc51o15, 5' end, single read. Length = 642
Score = 676 bits (341), Expect(3) = 0.0 Identities = 341/341 (100%) Strand = Plus / Plus
Query: 43 tacaatgtcatacaataataacagcaacgaagctgaaaattattttgaagatttcgatgc 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21 tacaatgtcatacaataataacagcaacgaagctgaaaattattttgaagatttcgatgc 80
Query: 103 tgccccattagatgaagatgcgccatatgatgatgatgaaacatttggtgatacaggtcc 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 tgccccattagatgaagatgcgccatatgatgatgatgaaacatttggtgatacaggtcc 140
Query: 163 tctaaatgatgaatgggaaaatcaacatactttattatcaggagaacatgaatcattctt 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 tctaaatgatgaatgggaaaatcaacatactttattatcaggagaacatgaatcattctt 200
Query: 223 aacacaaaataaattaagagaacaatcagacattcaagaaggttatagtaatggcgttaa 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 aacacaaaataaattaagagaacaatcagacattcaagaaggttatagtaatggcgttaa 260
Query: 283 tcaacataacgatgaagatgaagatgaagaagattataatacttacaaacaatctagatt 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 tcaacataacgatgaagatgaagatgaagaagattataatacttacaaacaatctagatt 320
Query: 343 tacaaatggtggtagagatgttagacattttactcaatctt 383 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 tacaaatggtggtagagatgttagacattttactcaatctt 361
Score = 168 bits (85), Expect(3) = 0.0 Identities = 85/85 (100%) Strand = Plus / Plus
Query: 580 gggattaatgggtggtatttcagtcaatggtaatgttgatagtgagggattatcaagtaa 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 gggattaatgggtggtatttcagtcaatggtaatgttgatagtgagggattatcaagtaa 617
Query: 640 aggattatcattatcagatattgaa 664 ||||||||||||||||||||||||| Sbjct: 618 aggattatcattatcagatattgaa 642
Score = 139 bits (70), Expect(3) = 0.0 Identities = 70/70 (100%) Strand = Plus / Plus
Query: 470 ttagatgatgatcatggacaattggatgatcatttagaatcagtatttaagattgtggat 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 ttagatgatgatcatggacaattggatgatcatttagaatcagtatttaagattgtggat 507
Query: 530 gattcaaaag 539 |||||||||| Sbjct: 508 gattcaaaag 517
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 709,867,482 Number of extensions: 45910600 Number of successful extensions: 4956651 Number of sequences better than 10.0: 1438 Length of query: 850 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 826 Effective length of database: 97,308,875,965 Effective search space: 80377131547090 Effective search space used: 80377131547090 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
3 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |