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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11910-1
Contig ID Contig-U11910-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Contig-U11910-1Q.Seq.d
ACTGTTGGCCTACTGGNATTTTTAATTCACTTTTTTGCACACCACAAAAC
ACCAAGNAAAATATATTTCTTTTTATTGTTATATTTCCACTCCTCATAAT
AAAAATCACATTACAATAGATTTATGTTTTAAAAAAAAAAAAAANTTAAA
AAAAAAANNNNNNNNN----------NNNNNNNNNNAAGTTATTATACGA
TACAGATGTTGAAGTTTCAATTGCAACTAGATTCCACTTTTTACCATCAT
TAGCGAATTGGGCAGATCTATTGGAATCATTAAATTCAAAATTAACAAAT
TTCTTATTAACTGAAATGTTATCAATTCTAATTAAATATTCAGCACAAAA
AGATGAATTTAAAATTCCAGAACAAGATACATTCAAATTAGATCAATTAC
TTCAATGTTTTATTGATTTAATACCAAGAATTCATCAATCTGTCATTTCT
TCTTCAATCTTTATAAATGAAAAAGATGCATTACAAATTGAAAATGAATA
TAATAAACAAGAAGCATTATATCAATTTCAAATTAATAATCAAAATCAAA
ATAATAATAATAATTCAACTACGACGACAACTACAACAACAACTTCTACA
AATACAAATAATTCATCATCATCATCAAATTCAACAACAAATAATAATAA
TAATAATAAAGATAATAAAACAATTGGTAGTAGTACAATTATAAATTCAG
CAATTAGAATTTCAATTTTAGGTAATAATGAAATTTCAAAACTACAATCA
CAATTTGAAAATT
Gap gap included
Contig length 753
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3183238
End point 3183955
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U11910
List of clone(s) 

est1=CHP669F,1,157
est2=CHP669Z,158,735
Translated Amino Acid sequence 
llaywxf*FTFLHTTKHQXKYISFYCYISTPHNKNHITIDLCFKKKKXLKKKXXX---

---XXXKLLYDTDVEVSIATRFHFLPSLANWADLLESLNSKLTNFLLTEMLSILIKYSAQ
KDEFKIPEQDTFKLDQLLQCFIDLIPRIHQSVISSSIFINEKDALQIENEYNKQEALYQF
QINNQNQNNNNNSTTTTTTTTTSTNTNNSSSSSNSTTNNNNNNKDNKTIGSSTIINSAIR
ISILGNNEISKLQSQFEN
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxflihffahhktpxkiyfflllyfhss**kshynrfmf*kkkkxkkkxxx---

---xxxxviiryrc*sfncn*iplftiiselgrsigiikfkinkflin*nvinsn*ifst
kr*i*nsrtryiqirsitsmfy*fntknssichfffnlyk*krcitn*k*i**trsiisi
sn**sksk****fnyddnynnnfykyk*fiiiikfnnk******r**nnw**ynykfsn*
nfnfr***nfkttiti*k

Frame B:
llaywxf*FTFLHTTKHQXKYISFYCYISTPHNKNHITIDLCFKKKKXLKKKXXX---

---XXXKLLYDTDVEVSIATRFHFLPSLANWADLLESLNSKLTNFLLTEMLSILIKYSAQ
KDEFKIPEQDTFKLDQLLQCFIDLIPRIHQSVISSSIFINEKDALQIENEYNKQEALYQF
QINNQNQNNNNNSTTTTTTTTTSTNTNNSSSSSNSTTNNNNNNKDNKTIGSSTIINSAIR
ISILGNNEISKLQSQFEN

Frame C:
cwptgifnslfctpqntkxniflfivifplliikitlq*iyvlkkkkx*kkxxx---

---xxxsyytiqmlkfqlqldstfyhh*rigqiywnh*iqn*qisy*lkcyqf*lniqhk
kmnlkfqnkihsn*inyfnvlli*yqefinlsfllqsl*mkkmhyklkmniinkkhyinf
kliikikiiiiiqlrrqlqqqllqiqiihhhhqiqqqiiiiiikiikqlvvvql*iqqle
fqf*vimkfqnynhnlki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11910-1 (Contig-U11910-1Q)
/CSM_Contig/Contig-U11910-1Q.Seq.d
         (763 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti...   652  0.0
Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U11241-1 (Contig-U11241-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U13162-1 (Contig-U13162-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U01120-1 (Contig-U01120-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U10989-1 (Contig-U10989-1Q) /CSM_Contig/Conti...    44  2e-04

>Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Contig-U11910-1Q.Seq.d
          Length = 763

 Score =  652 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Plus

                                                                       
Query: 187 aagttattatacgatacagatgttgaagtttcaattgcaactagattccactttttacca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aagttattatacgatacagatgttgaagtttcaattgcaactagattccactttttacca 246

                                                                       
Query: 247 tcattagcgaattgggcagatctattggaatcattaaattcaaaattaacaaatttctta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tcattagcgaattgggcagatctattggaatcattaaattcaaaattaacaaatttctta 306

                                                                       
Query: 307 ttaactgaaatgttatcaattctaattaaatattcagcacaaaaagatgaatttaaaatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttaactgaaatgttatcaattctaattaaatattcagcacaaaaagatgaatttaaaatt 366

                                                                       
Query: 367 ccagaacaagatacattcaaattagatcaattacttcaatgttttattgatttaatacca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccagaacaagatacattcaaattagatcaattacttcaatgttttattgatttaatacca 426

                                                                       
Query: 427 agaattcatcaatctgtcatttcttcttcaatctttataaatgaaaaagatgcattacaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agaattcatcaatctgtcatttcttcttcaatctttataaatgaaaaagatgcattacaa 486

                                        
Query: 487 attgaaaatgaatataataaacaagaagc 515
           |||||||||||||||||||||||||||||
Sbjct: 487 attgaaaatgaatataataaacaagaagc 515


 Score =  246 bits (124), Expect = 3e-65
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttggcctactggnatttttaattcacttttttgcacaccacaaaacaccaagnaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   actgttggcctactggnatttttaattcacttttttgcacaccacaaaacaccaagnaaa 60

                                                                       
Query: 61  atatatttctttttattgttatatttccactcctcataataaaaatcacattacaataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atatatttctttttattgttatatttccactcctcataataaaaatcacattacaataga 120

                     
Query: 121 tttatgtttt 130
           ||||||||||
Sbjct: 121 tttatgtttt 130


 Score =  188 bits (95), Expect = 6e-48
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 669 aacaattggtagtagtacaattataaattcagcaattagaatttcaattttaggtaataa 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aacaattggtagtagtacaattataaattcagcaattagaatttcaattttaggtaataa 728

                                              
Query: 729 tgaaatttcaaaactacaatcacaatttgaaaatt 763
           |||||||||||||||||||||||||||||||||||
Sbjct: 729 tgaaatttcaaaactacaatcacaatttgaaaatt 763


 Score =  143 bits (72), Expect = 3e-34
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                       
Query: 568 actacgacgacaactacaacaacaacttctacaaatacaaataattcatcatcatcatca 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 actacgacgacaactacaacaacaacttctacaaatacaaataattcatcatcatcatca 627

                       
Query: 628 aattcaacaaca 639
           ||||||||||||
Sbjct: 628 aattcaacaaca 639


>Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Contig-U11511-1Q.Seq.d
          Length = 940

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  actgttggcctactggnatttttaatt 27
          |||||||||||||||| ||||||||||
Sbjct: 1  actgttggcctactggtatttttaatt 27


>Contig-U11241-1 (Contig-U11241-1Q) /CSM_Contig/Contig-U11241-1Q.Seq.d
          Length = 1920

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 616  tcatcatcatcaaattcaacaaca 639
            ||||||||||||||||||||||||
Sbjct: 1103 tcatcatcatcaaattcaacaaca 1126


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,093
Number of Sequences: 6905
Number of extensions: 24093
Number of successful extensions: 6536
Number of sequences better than 10.0: 1024
length of query: 763
length of database: 5,674,871
effective HSP length: 16
effective length of query: 747
effective length of database: 5,564,391
effective search space: 4156600077
effective search space used: 4156600077
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Contig-U11910-1Q.Seq.d
         (763 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ383606) Dictyostelium discoideum cDNA clone:ddc53i18, 3' ...   615   0.0    2
(BJ370293) Dictyostelium discoideum cDNA clone:ddc53i18, 5' ...   246   1e-60  1
(BJ412794) Dictyostelium discoideum cDNA clone:ddv9k23, 5' e...    42   0.059  2
(BJ415870) Dictyostelium discoideum cDNA clone:ddv24b06, 5' ...    50   0.12   1
(BJ387278) Dictyostelium discoideum cDNA clone:dds1c09, 5' e...    50   0.12   1
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.19   7
(EI850685) CAH1-17E13TR CAA1Ba Cicer arietinum genomic clone...    34   0.36   2
(CU896676) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.49   1
(BJ338419) Dictyostelium discoideum cDNA clone:dda61o08, 5' ...    48   0.49   1
(BJ325655) Dictyostelium discoideum cDNA clone:dda1h20, 5' e...    48   0.49   1
(AC174370) Medicago truncatula chromosome 8 clone mth2-50f20...    40   0.51   3
(CX715288) RTPQ1_33_D12.b1_A032 Roots treated with paraquat ...    40   1.2    2
(DR160770) RTFE1_8_A07.b1_A029 Roots minus iron Pinus taeda ...    40   1.4    2
(AC094635) Rattus norvegicus clone CH230-5D20, *** SEQUENCIN...    42   1.4    7
(AM468693) Vitis vinifera contig VV78X053474.6, whole genome...    42   1.8    2
(AM482610) Vitis vinifera contig VV78X053631.9, whole genome...    46   1.9    1
(AM461386) Vitis vinifera contig VV78X194463.5, whole genome...    46   1.9    1
(AM451674) Vitis vinifera contig VV78X108231.5, whole genome...    46   1.9    1
(AM447619) Vitis vinifera contig VV78X241056.14, whole genom...    46   1.9    1
(CU928650) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(FH732730) CHO_OF5114xh21r1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   1.9    1
(CZ836452) OC__Ba0219P15.r OC__Ba Oryza coarctata genomic cl...    46   1.9    1
(CZ810845) OC__Ba0185K13.f OC__Ba Oryza coarctata genomic cl...    46   1.9    1
(BJ416023) Dictyostelium discoideum cDNA clone:ddv24i16, 5' ...    46   1.9    1
(BJ363011) Dictyostelium discoideum cDNA clone:ddc24f16, 5' ...    46   1.9    1
(EY320422) CAWX7378.fwd CAWX Helobdella robusta Primary Earl...    46   1.9    1
(AC216689) Populus trichocarpa clone POP101-J02, complete se...    32   2.2    6
(CU024867) Pan troglodytes chromosome X clone CH251-141I15 m...    42   2.3    4
(BJ392501) Dictyostelium discoideum cDNA clone:dds27j24, 5' ...    40   2.4    2
(AC192192) Pan troglodytes chromosome X clone CH251-141I15, ...    42   2.4    5
(BJ424732) Dictyostelium discoideum cDNA clone:ddv53k10, 5' ...    32   2.6    3
(AC137286) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    42   2.7    7
(BW635788) Dugesia ryukyuensis mRNA, clone: Dr_sW_003_G13, 5...    38   2.9    2
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    34   3.0    9
(BJ387799) Dictyostelium discoideum cDNA clone:dds5g05, 5' e...    36   3.1    2
(AM829489) Nicotiana tabacum EST, clone nt006166090.               36   3.1    2
(BJ387680) Dictyostelium discoideum cDNA clone:dds4n01, 5' e...    36   3.1    2
(AC095560) Rattus norvegicus clone CH230-8D10, *** SEQUENCIN...    42   3.2    7
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    34   3.2    2
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    34   3.2    2
(AC019022) Homo sapiens clone RP11-25P2, WORKING DRAFT SEQUE...    40   3.3    6
(BJ411724) Dictyostelium discoideum cDNA clone:ddv5e15, 5' e...    36   3.4    2
(BJ325697) Dictyostelium discoideum cDNA clone:dda1d06, 5' e...    40   3.8    2
(BJ390404) Dictyostelium discoideum cDNA clone:dds22e10, 5' ...    38   4.0    2
(BH922793) odi45f10.b1 B.oleracea002 Brassica oleracea genom...    40   4.1    2
(CJ450904) Macaca fascicularis mRNA, clone: QflA-16486, 5' e...    36   4.6    2
(AP010171) Lotus japonicus genomic DNA, clone: LjT31K10, TM1...    42   4.8    4
(CW939175) TcB19.2_H02_T7 Tribolium BAC library Tribolium ca...    34   4.9    2
(AC183425) Populus trichocarpa clone Pop1-41C9, complete seq...    34   7.0    5
(CR762422) Zebrafish DNA sequence from clone CH211-184I23 in...    44   7.6    1
(CR388168) Zebrafish DNA sequence from clone DKEY-109J17 in ...    44   7.6    1
(AY768814) Canine herpesvirus isolate greyhound UL19 gene, p...    44   7.6    1
(AY768815) Cloning vector pCMH396, complete sequence.              44   7.6    1
(AL672243) Mouse DNA sequence from clone RP23-343M4 on chrom...    44   7.6    1
(AM473015) Vitis vinifera, whole genome shotgun sequence, co...    44   7.6    1
(AP002782) Homo sapiens genomic DNA, chromosome 11q clone:RP...    44   7.6    1
(AP001922) Homo sapiens genomic DNA, chromosome 11q, clone:C...    44   7.6    1
(AC093854) Homo sapiens BAC clone RP11-503F14 from 4, comple...    44   7.6    1
(AC022450) Homo sapiens chromosome 5 clone RP11-96F10, compl...    44   7.6    1
(AC160383) Bos taurus clone CH240-83M11, WORKING DRAFT SEQUE...    44   7.6    1
(AC153194) Bos taurus clone CH240-32P7, WORKING DRAFT SEQUEN...    44   7.6    1
(AC145682) Homo sapiens chromosome UNK clone XXFOS-8766F5, *...    44   7.6    1
(AC126820) Rattus norvegicus clone CH230-7F22, WORKING DRAFT...    44   7.6    1
(AC119769) Rattus norvegicus clone CH230-443C8, *** SEQUENCI...    44   7.6    1
(AC106675) Rattus norvegicus clone CH230-107O1, *** SEQUENCI...    44   7.6    1
(AP002386) Homo sapiens genomic DNA, chromosome 11q14 clone:...    44   7.6    1
(AP001142) Homo sapiens genomic DNA, chromosome 11q14 clone:...    44   7.6    1
(AP000588) Homo sapiens genomic DNA, chromosome 11q14 clone:...    44   7.6    1
(AP000584) Homo sapiens genomic DNA, chromosome 11q14 clone:...    44   7.6    1
(AC230311) Bos taurus clone CH240-513M23, WORKING DRAFT SEQU...    44   7.6    1
(AC222300) Bos taurus clone CH240-414I5, WORKING DRAFT SEQUE...    44   7.6    1
(AC221896) Bos taurus clone CH240-378G13, WORKING DRAFT SEQU...    44   7.6    1
(AC163830) Bos taurus clone CH240-133G15, *** SEQUENCING IN ...    44   7.6    1
(AC011256) Homo sapiens chromosome 11 clone RP11-187G13 map ...    44   7.6    1
(AZ676887) ENTKV22TR Entamoeba histolytica Sheared DNA Entam...    44   7.6    1
(EK273059) 1095462265885 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK186528) 1095458155118 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EJ990794) 1093023047872 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.6    1
(EJ854860) 1093017911638 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.6    1
(DU726370) Ynhw15156 HW-YUBAC Bos taurus genomic clone HW-YU...    44   7.6    1
(AL447115) Paramecium tetraurelia sequence M20D02u of the en...    44   7.6    1
(DH533900) Rattus norvegicus DNA, BAC clone: RNB1-035M16, 3'...    44   7.6    1
(CW979729) KBrH003K03R KBrH, Brassica rapa HindIII BAC libra...    44   7.6    1
(CW746191) MARC_925976 CHORI-240-290C17 Bos taurus genomic c...    44   7.6    1
(CW746149) MARC_925930 CHORI-240-290C17 Bos taurus genomic c...    44   7.6    1
(CW729893) MARC_764523 CHORI-240-36P2 Bos taurus genomic clo...    44   7.6    1
(CU751791) A BAC library has been constructed from PN40024 g...    44   7.6    1
(AG550733) Mus musculus molossinus DNA, clone:MSMg01-466O07....    44   7.6    1
(BX209118) Danio rerio genomic clone DKEY-257K24, genomic su...    44   7.6    1
(ES391112) MUS12-L04.x1d-t SHGC-MUS Mytilus californianus cD...    44   7.6    1
(DC200922) Plasmodium berghei cDNA clone:LV013689, liver sta...    44   7.6    1
(CO885379) BovGen_13704 normal cattle brain Bos taurus cDNA ...    44   7.6    1
(CO354348) DR_ATE_FL26_B02 adult testis full-length (TLL) Da...    44   7.6    1
(CJ484651) Macaca fascicularis mRNA, clone: QtsA-12203, 5' e...    44   7.6    1
(CJ459349) Macaca fascicularis mRNA, clone: QmoA-11531, 5' e...    44   7.6    1
(CJ442004) Macaca fascicularis mRNA, clone: QccE-19501, 5' e...    44   7.6    1
(CB079641) hp74e12.b1 Hedyotis terminalis flower - Stage 2 (...    44   7.6    1
(BM166001) EST568524 PyBS Plasmodium yoelii yoelii cDNA clon...    44   7.6    1
(BJ928597) Daphnia magna cDNA, clone:IGU001_0035_A06.r, 3' e...    44   7.6    1
(BJ416340) Dictyostelium discoideum cDNA clone:ddv25i21, 5' ...    44   7.6    1

>(BJ383606) Dictyostelium discoideum cDNA clone:ddc53i18, 3' end,
           single read.
          Length = 578

 Score =  615 bits (310), Expect(2) = 0.0
 Identities = 310/310 (100%)
 Strand = Plus / Minus


Query: 187 aagttattatacgatacagatgttgaagtttcaattgcaactagattccactttttacca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aagttattatacgatacagatgttgaagtttcaattgcaactagattccactttttacca 519


Query: 247 tcattagcgaattgggcagatctattggaatcattaaattcaaaattaacaaatttctta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcattagcgaattgggcagatctattggaatcattaaattcaaaattaacaaatttctta 459


Query: 307 ttaactgaaatgttatcaattctaattaaatattcagcacaaaaagatgaatttaaaatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttaactgaaatgttatcaattctaattaaatattcagcacaaaaagatgaatttaaaatt 399


Query: 367 ccagaacaagatacattcaaattagatcaattacttcaatgttttattgatttaatacca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ccagaacaagatacattcaaattagatcaattacttcaatgttttattgatttaatacca 339


Query: 427 agaattcatcaatctgtcatttcttcttcaatctttataaatgaaaaagatgcattacaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agaattcatcaatctgtcatttcttcttcaatctttataaatgaaaaagatgcattacaa 279


Query: 487 attgaaaatg 496
           ||||||||||
Sbjct: 278 attgaaaatg 269

 Score =  188 bits (95), Expect(2) = 0.0
 Identities = 95/95 (100%)
 Strand = Plus / Minus


Query: 669 aacaattggtagtagtacaattataaattcagcaattagaatttcaattttaggtaataa 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  aacaattggtagtagtacaattataaattcagcaattagaatttcaattttaggtaataa 37


Query: 729 tgaaatttcaaaactacaatcacaatttgaaaatt 763
           |||||||||||||||||||||||||||||||||||
Sbjct: 36  tgaaatttcaaaactacaatcacaatttgaaaatt 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 779,692,990
Number of extensions: 52821234
Number of successful extensions: 4436750
Number of sequences better than 10.0: 135
Length of query: 763
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 739
Effective length of database: 97,308,875,965
Effective search space: 71911259338135
Effective search space used: 71911259338135
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Contig-U11910-1Q.Seq.d
         (763 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000361_330(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    35   2.0
CP000033_1759(CP000033|pid:none) Lactobacillus acidophilus NCFM,...    35   2.0
AM180622_7(AM180622|pid:none) Pichia acaciae plasmid pPac1-1.          34   5.7
AK135452_1(AK135452|pid:none) Mus musculus 12 days embryo female...    33   9.8
AF319975_1(AF319975|pid:none) Mus musculus mage-d1 mRNA, complet...    33   9.8
AK220150_1(AK220150|pid:none) Mus musculus mRNA for mFLJ00163 pr...    33   9.8
BC031461_1(BC031461|pid:none) Mus musculus melanoma antigen, fam...    33   9.8
(Q2UG94) RecName: Full=Mediator of RNA polymerase II transcripti...    33   9.8
AP007157_829(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    33   9.8
AB125203_1(AB125203|pid:none) Macaca fascicularis MAGED1 mRNA fo...    33   9.8
(Q9ES73) RecName: Full=Melanoma-associated antigen D1; AltName: ...    33   9.8
BC016438_1(BC016438|pid:none) Mus musculus melanoma antigen, fam...    33   9.8
AL929410_1(AL929410|pid:none) Human DNA sequence from clone RP11...    33   9.8
(Q9QYH6) RecName: Full=Melanoma-associated antigen D1; AltName: ...    33   9.8
AJ133038_1(AJ133038|pid:none) Rattus norvegicus mRNA for SNERG-1...    33   9.8
(Q6KID2) RecName: Full=Valyl-tRNA synthetase;          EC=6.1.1....    33   9.8

>CP000361_330(CP000361|pid:none) Arcobacter butzleri RM4018,
           complete genome.
          Length = 695

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
 Frame = -3

Query: 362 LNSSFCAEYLIRIDNISVNKKF-VNFEFNDSNRSAQFANDG-KKWNLVAIET 213
           LN S+  E  ++ID+ S +KKF +N EF+  NR A  ANDG ++WN   ++T
Sbjct: 287 LNLSYELEK-VKIDSTSTHKKFDLNAEFDSDNR-ADNANDGLRQWNYTKVDT 336

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 676,862,594
Number of extensions: 12002259
Number of successful extensions: 24861
Number of sequences better than 10.0: 16
Number of HSP's gapped: 24858
Number of HSP's successfully gapped: 16
Length of query: 254
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 128
Effective length of database: 643,374,430
Effective search space: 82351927040
Effective search space used: 82351927040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.66  gvh: 0.21  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U11910-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0