NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11901-1
Contig ID Contig-U11901-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Contig-U11901-1Q.Seq.d
TTCATTATACGTTTATCAACATCCAACTGATGAACAAAAAAGACACATTT
CAGAACTGTATGGTTATAAAGAGCATGATGACCATGGTTATAAATATACT
CATGATTCAAGTATAGATGGTGAAGCTGATTCTTCATCTGATAGTTATAC
TACATCATTCAATAGAATGAATAATATAAATAAAAGTTCACCAAGTTCAA
TTTCACCACCAATACCAAACTATCCACACACTATATTACCAAATTCAACA
ACACCAACACCACCAACAACATCAACAACTAATAATAATACAAATGTTGC
AACAAGTGTAACAACTCAATTACCACCACCATCAATTGTTAATCAAATTG
ATAGTATTTTAGAACCAGCACCAATTGATTTATCACAAATACCACAATCT
TATTTTTCAACCAATTATAAATCAAGTGGTAATAATATAAATACATCAAA
CTATAAACAATCACAATATTTGGATGATGAATATGATGAAAAGAAAGCGG
CATCACAACCAATTCAACCACCACTTTCAACAGCAAAAGATTGGAATGCG
GAATTTCAAAATTTAGTTTACAATAATAAAATTGAAGGTTATAGAGAATT
GAGTAAACTTGCTCATGATTTTGTTTATACCGCTAAAATATATGGTAAAG
TTATCATATCTGAATTAACATTACCATTACATTTAAAAACAATTAAACCA
ATTAATATTGGTGGTGTTGCTGGTGGTCATAAATATATTGCATTAGGTAT
TTTATTTAAATTAGCATTAGATTCACAAGGTTTATATGTTGGAGATCAAA
ATGCAATGAAAGCAGCAGGACATGAATTAAAAGGTTTAATGAGTTATTAT
AATTGTAGAGTTGAAGGTTTACATCATCCATTAATGGCATTAATTGATTA
TAGAGGATATCGTTTAGTTGCAATGTCACTATTACCAATTAATTCAGATA
CGATTGTTTATGGAAGTAGTGATGGTGGTATATCAGTTCATAACTCTGAT
GAGGATTTCAATCAAA----------GAGATTATGGCAAGAACTATGAAA
TCAGAGATGATGCAATTGTTTAGAAGTAAGATGAAGACTGCGGACACTCC
ATCTGAAGAGCCTTTCAAAGAGGTGGTGGTACAATATTTGAATGCTCTCT
TCAAGTATGAGGATTCTGTCACTACACCAGGTTGTAAAGTTTGGCCACGT
TCCCTAAGAAAATCAATTGAAAAGAAATTCTTTGGAACTTTTCAAATGAA
TGATACCAACTCTAGTGTGATCACTTTTGAGAAGATTCAAGGCAAACGTT
TTGATGAGGATGCCATAAAGAGATTTATAAAGGGTGCAAGTTTCACCATT
CAAGAGGAGATGTTTGTAGATAGTGTAGATATACCAAATGTAATGAAACG
TTTCAATCAATTGACTGGTGTCGGGTTAACTAGTAGAGCATTGAGAGAGA
TCACCAAACATGATGGTGTTAGATTGGTACAATCCGATGTAAAGAGAATG
AAAGCCAAAGTTAAGGCACATCATTTGGTGGAGTTTGCCGAAGGTATGGT
TCTTTGGGATGAAGCAAAGAAGGAGAAATCAAGAGAAAAGATAGAGGGTG
CTTTCTGTCCTTGTCCAGTGACATTGATCAATGGTGATGCTGCCGATAAA
ATCACAGATCGTCTCTTTGGCTTGGCAGATGACCATTTTCGTAGCGCATT
ATCAGTTTCACCGCATTCAGCAGAGGTCACTGCAAATTGGGCAATGATGT
TGATGGAAAGAGCAAGAATGTCAAGAGAATGTGTGCCACAAGAGGCGGAT
CTCTATTATAATGCCGCCGAGGAAAAGGTTAGATCATGTTTGGCCGATGG
TGGTAAACCAAAGATTGCATTGGAGAATGTATTATTAGAGTATTCGGAAT
TCCTTGTATTTGGGGTACTACCACCGACCA
Gap gap included
Contig length 1920
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 339725
End point 341649
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U11901
List of clone(s) 

est1=CHP333F,1,618
est2=VHB893F,419,1016
est3=VHD433F,1017,1582
est4=CHP333Z,1235,1921
Translated Amino Acid sequence 
SLYVYQHPTDEQKRHISELYGYKEHDDHGYKYTHDSSIDGEADSSSDSYTTSFNRMNNIN
KSSPSSISPPIPNYPHTILPNSTTPTPPTTSTTNNNTNVATSVTTQLPPPSIVNQIDSIL
EPAPIDLSQIPQSYFSTNYKSSGNNINTSNYKQSQYLDDEYDEKKAASQPIQPPLSTAKD
WNAEFQNLVYNNKIEGYRELSKLAHDFVYTAKIYGKVIISELTLPLHLKTIKPINIGGVA
GGHKYIALGILFKLALDSQGLYVGDQNAMKAAGHELKGLMSYYNCRVEGLHHPLMALIDY
RGYRLVAMSLLPINSDTIVYGSSDGGISVHNSDEDFNQ---

---EIMARTMKSEMMQLFRSKMKTADTPSEEPFKEVVVQYLNALFKYEDSVTTPGCKVWP
RSLRKSIEKKFFGTFQMNDTNSSVITFEKIQGKRFDEDAIKRFIKGASFTIQEEMFVDSV
DIPNVMKRFNQLTGVGLTSRALREITKHDGVRLVQSDVKRMKAKVKAHHLVEFAEGMVLW
DEAKKEKSREKIEGAFCPCPVTLINGDAADKITDRLFGLADDHFRSALSVSPHSAEVTAN
WAMMLMERARMSRECVPQEADLYYNAAEEKVRSCLADGGKPKIALENVLLEYSEFLVFGV
LPPT
Translated Amino Acid sequence (All Frames) 
Frame A:
fiirlstsn**tkkthfrtvwl*ra**pwl*iys*fkyrw*s*ffi**lyyiiq*ne*yk
*kftkfnfttntklsthyitkfnntnttnninn***ykccnkcnnsitttinc*sn**yf
rtstn*fitnttilffnql*ikw**ykyikl*titifg**i**kesgittnstttfnskr
lecgiskfslq**n*rl*rie*tcs*fclyr*niw*syhi*inititfknn*tn*ywwcc
wws*iyciryfi*isirftrficwrskcnessrt*ikrfnell*l*s*rftssingin*l
*risfscnvtitn*frydclwk**wwyiss*l**gfqs---

---EIMARTMKSEMMQLFRSKMKTADTPSEEPFKEVVVQYLNALFKYEDSVTTPGCKVWP
RSLRKSIEKKFFGTFQMNDTNSSVITFEKIQGKRFDEDAIKRFIKGASFTIQEEMFVDSV
DIPNVMKRFNQLTGVGLTSRALREITKHDGVRLVQSDVKRMKAKVKAHHLVEFAEGMVLW
DEAKKEKSREKIEGAFCPCPVTLINGDAADKITDRLFGLADDHFRSALSVSPHSAEVTAN
WAMMLMERARMSRECVPQEADLYYNAAEEKVRSCLADGGKPKIALENVLLEYSEFLVFGV
LPPT

Frame B:
SLYVYQHPTDEQKRHISELYGYKEHDDHGYKYTHDSSIDGEADSSSDSYTTSFNRMNNIN
KSSPSSISPPIPNYPHTILPNSTTPTPPTTSTTNNNTNVATSVTTQLPPPSIVNQIDSIL
EPAPIDLSQIPQSYFSTNYKSSGNNINTSNYKQSQYLDDEYDEKKAASQPIQPPLSTAKD
WNAEFQNLVYNNKIEGYRELSKLAHDFVYTAKIYGKVIISELTLPLHLKTIKPINIGGVA
GGHKYIALGILFKLALDSQGLYVGDQNAMKAAGHELKGLMSYYNCRVEGLHHPLMALIDY
RGYRLVAMSLLPINSDTIVYGSSDGGISVHNSDEDFNQ---

---rlwqel*nqr*cnclevr*rlrtlhlkslskrwwyni*mlsssmrilslhqvvkfgh
vp*enqlkrnslelfk*miptlv*sllrrfkanvlmrmp*rdl*rvqvspfkrrcl*iv*
iyqm**nvsin*lvsg*lveh*erspnmmvldwynpm*re*kpklrhiiwwslpkvwffg
mkqrrrnqekr*rvlsvlvq*h*smvmlpiksqivslawqmtifvahyqfhriqqrslqi
gq*c*wkeqecqenvchkrrisiimpprkrldhvwpmvvnqrlhwrmyy*sirnslylgy
yhrp

Frame C:
hytfiniqlmnkkdtfqncmviksmmtmvinilmiqv*mvklilhlivilhhsie*ii*i
kvhqvqfhhqyqtihtlyyqiqqhqhhqqhqqliiiqmlqqv*qlnyhhhqlliklivf*
nqhqliyhkyhnlifqpiinqvvii*ihqtinnhniwmmnmmkrkrhhnqfnhhfqqqki
gmrnfki*ftiiklkvien*vnllmilfiplkymvklsyln*hyhyi*kqlnqlilvvll
vvinilh*vfyln*h*ihkvymleikmq*kqqdmn*kv**viiivelkvyiih*wh*lii
ediv*lqchyyqliqirlfmevvmvvyqfitlmrisik---

---dygknyeirddaiv*k*dedcghsi*rafqrgggtifecslqv*gfchytrl*slat
fpkkin*keilwnfsne*yql*cdhf*edsrqtf**gchkeiykgckfhhsrgdvcr*cr
ytkcnetfqsidwcrvn**sierdhqt*wc*igtirckenesqs*gtsfggvcrrygslg
*skegeikrkdrgcflslssdidqw*ccr*nhrsslwlgr*pfs*riisftafsrghckl
gndvdgksknvkrmcatrggsll*crrgkg*imfgrww*tkdcigeciirvfgipciwgt
ttd
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11901-1 (Contig-U11901-1Q)
/CSM_Contig/Contig-U11901-1Q.Seq.d
         (1930 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Conti...  3213  0.0
Contig-U01624-1 (Contig-U01624-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12503-1 (Contig-U12503-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U14078-1 (Contig-U14078-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U13631-1 (Contig-U13631-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U12538-1 (Contig-U12538-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U12074-1 (Contig-U12074-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11849-1 (Contig-U11849-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11328-1 (Contig-U11328-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U11185-1 (Contig-U11185-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Contig-U11901-1Q.Seq.d
          Length = 1930

 Score = 3213 bits (1621), Expect = 0.0
 Identities = 1651/1651 (100%)
 Strand = Plus / Plus

                                                                        
Query: 280  taataataatacaaatgttgcaacaagtgtaacaactcaattaccaccaccatcaattgt 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280  taataataatacaaatgttgcaacaagtgtaacaactcaattaccaccaccatcaattgt 339

                                                                        
Query: 340  taatcaaattgatagtattttagaaccagcaccaattgatttatcacaaataccacaatc 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340  taatcaaattgatagtattttagaaccagcaccaattgatttatcacaaataccacaatc 399

                                                                        
Query: 400  ttatttttcaaccaattataaatcaagtggtaataatataaatacatcaaactataaaca 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400  ttatttttcaaccaattataaatcaagtggtaataatataaatacatcaaactataaaca 459

                                                                        
Query: 460  atcacaatatttggatgatgaatatgatgaaaagaaagcggcatcacaaccaattcaacc 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  atcacaatatttggatgatgaatatgatgaaaagaaagcggcatcacaaccaattcaacc 519

                                                                        
Query: 520  accactttcaacagcaaaagattggaatgcggaatttcaaaatttagtttacaataataa 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  accactttcaacagcaaaagattggaatgcggaatttcaaaatttagtttacaataataa 579

                                                                        
Query: 580  aattgaaggttatagagaattgagtaaacttgctcatgattttgtttataccgctaaaat 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580  aattgaaggttatagagaattgagtaaacttgctcatgattttgtttataccgctaaaat 639

                                                                        
Query: 640  atatggtaaagttatcatatctgaattaacattaccattacatttaaaaacaattaaacc 699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  atatggtaaagttatcatatctgaattaacattaccattacatttaaaaacaattaaacc 699

                                                                        
Query: 700  aattaatattggtggtgttgctggtggtcataaatatattgcattaggtattttatttaa 759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  aattaatattggtggtgttgctggtggtcataaatatattgcattaggtattttatttaa 759

                                                                        
Query: 760  attagcattagattcacaaggtttatatgttggagatcaaaatgcaatgaaagcagcagg 819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  attagcattagattcacaaggtttatatgttggagatcaaaatgcaatgaaagcagcagg 819

                                                                        
Query: 820  acatgaattaaaaggtttaatgagttattataattgtagagttgaaggtttacatcatcc 879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  acatgaattaaaaggtttaatgagttattataattgtagagttgaaggtttacatcatcc 879

                                                                        
Query: 880  attaatggcattaattgattatagaggatatcgtttagttgcaatgtcactattaccaat 939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  attaatggcattaattgattatagaggatatcgtttagttgcaatgtcactattaccaat 939

                                                                        
Query: 940  taattcagatacgattgtttatggaagtagtgatggtggtatatcagttcataactctga 999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  taattcagatacgattgtttatggaagtagtgatggtggtatatcagttcataactctga 999

                                                                        
Query: 1000 tgaggatttcaatcaaannnnnnnnnngagattatggcaagaactatgaaatcagagatg 1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tgaggatttcaatcaaannnnnnnnnngagattatggcaagaactatgaaatcagagatg 1059

                                                                        
Query: 1060 atgcaattgtttagaagtaagatgaagactgcggacactccatctgaagagcctttcaaa 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 atgcaattgtttagaagtaagatgaagactgcggacactccatctgaagagcctttcaaa 1119

                                                                        
Query: 1120 gaggtggtggtacaatatttgaatgctctcttcaagtatgaggattctgtcactacacca 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 gaggtggtggtacaatatttgaatgctctcttcaagtatgaggattctgtcactacacca 1179

                                                                        
Query: 1180 ggttgtaaagtttggccacgttccctaagaaaatcaattgaaaagaaattctttggaact 1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 ggttgtaaagtttggccacgttccctaagaaaatcaattgaaaagaaattctttggaact 1239

                                                                        
Query: 1240 tttcaaatgaatgataccaactctagtgtgatcacttttgagaagattcaaggcaaacgt 1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tttcaaatgaatgataccaactctagtgtgatcacttttgagaagattcaaggcaaacgt 1299

                                                                        
Query: 1300 tttgatgaggatgccataaagagatttataaagggtgcaagtttcaccattcaagaggag 1359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 tttgatgaggatgccataaagagatttataaagggtgcaagtttcaccattcaagaggag 1359

                                                                        
Query: 1360 atgtttgtagatagtgtagatataccaaatgtaatgaaacgtttcaatcaattgactggt 1419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 atgtttgtagatagtgtagatataccaaatgtaatgaaacgtttcaatcaattgactggt 1419

                                                                        
Query: 1420 gtcgggttaactagtagagcattgagagagatcaccaaacatgatggtgttagattggta 1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 gtcgggttaactagtagagcattgagagagatcaccaaacatgatggtgttagattggta 1479

                                                                        
Query: 1480 caatccgatgtaaagagaatgaaagccaaagttaaggcacatcatttggtggagtttgcc 1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 caatccgatgtaaagagaatgaaagccaaagttaaggcacatcatttggtggagtttgcc 1539

                                                                        
Query: 1540 gaaggtatggttctttgggatgaagcaaagaaggagaaatcaagagaaaagatagagggt 1599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 gaaggtatggttctttgggatgaagcaaagaaggagaaatcaagagaaaagatagagggt 1599

                                                                        
Query: 1600 gctttctgtccttgtccagtgacattgatcaatggtgatgctgccgataaaatcacagat 1659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 gctttctgtccttgtccagtgacattgatcaatggtgatgctgccgataaaatcacagat 1659

                                                                        
Query: 1660 cgtctctttggcttggcagatgaccattttcgtagcgcattatcagtttcaccgcattca 1719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1660 cgtctctttggcttggcagatgaccattttcgtagcgcattatcagtttcaccgcattca 1719

                                                                        
Query: 1720 gcagaggtcactgcaaattgggcaatgatgttgatggaaagagcaagaatgtcaagagaa 1779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 gcagaggtcactgcaaattgggcaatgatgttgatggaaagagcaagaatgtcaagagaa 1779

                                                                        
Query: 1780 tgtgtgccacaagaggcggatctctattataatgccgccgaggaaaaggttagatcatgt 1839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 tgtgtgccacaagaggcggatctctattataatgccgccgaggaaaaggttagatcatgt 1839

                                                                        
Query: 1840 ttggccgatggtggtaaaccaaagattgcattggagaatgtattattagagtattcggaa 1899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 ttggccgatggtggtaaaccaaagattgcattggagaatgtattattagagtattcggaa 1899

                                           
Query: 1900 ttccttgtatttggggtactaccaccgacca 1930
            |||||||||||||||||||||||||||||||
Sbjct: 1900 ttccttgtatttggggtactaccaccgacca 1930


 Score =  486 bits (245), Expect = e-137
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattatacgtttatcaacatccaactgatgaacaaaaaagacacatttcagaactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttcattatacgtttatcaacatccaactgatgaacaaaaaagacacatttcagaactgta 60

                                                                       
Query: 61  tggttataaagagcatgatgaccatggttataaatatactcatgattcaagtatagatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggttataaagagcatgatgaccatggttataaatatactcatgattcaagtatagatgg 120

                                                                       
Query: 121 tgaagctgattcttcatctgatagttatactacatcattcaatagaatgaataatataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaagctgattcttcatctgatagttatactacatcattcaatagaatgaataatataaa 180

                                                                       
Query: 181 taaaagttcaccaagttcaatttcaccaccaataccaaactatccacacactatattacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaaagttcaccaagttcaatttcaccaccaataccaaactatccacacactatattacc 240

                
Query: 241 aaatt 245
           |||||
Sbjct: 241 aaatt 245


>Contig-U01624-1 (Contig-U01624-1Q) /CSM_Contig/Contig-U01624-1Q.Seq.d
          Length = 930

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 419 aaatcaagtggtaataatataaata 443
           ||||||||||| |||||||||||||
Sbjct: 547 aaatcaagtggaaataatataaata 571


>Contig-U12503-1 (Contig-U12503-1Q) /CSM_Contig/Contig-U12503-1Q.Seq.d
          Length = 1343

 Score = 40.1 bits (20), Expect = 0.009
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 479 gaatatgatgaaaagaaagc 498
           ||||||||||||||||||||
Sbjct: 831 gaatatgatgaaaagaaagc 850


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,403
Number of Sequences: 6905
Number of extensions: 36403
Number of successful extensions: 3439
Number of sequences better than 10.0: 388
length of query: 1930
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1914
effective length of database: 5,564,391
effective search space: 10650244374
effective search space used: 10650244374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Contig-U11901-1Q.Seq.d
         (1930 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ383212) Dictyostelium discoideum cDNA clone:ddc52b09, 3' ...  1360   0.0    1
(BJ419052) Dictyostelium discoideum cDNA clone:ddv34j24, 5' ...  1174   0.0    1
(BJ419798) Dictyostelium discoideum cDNA clone:ddv37b10, 5' ...  1114   0.0    1
(BJ369848) Dictyostelium discoideum cDNA clone:ddc52b09, 5' ...   620   0.0    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    50   3e-12  3
(AF474341) Dictyostelium discoideum ABC transporter ABCC.9 (...    40   0.003  5
(EJ214217) 1092351036389 Global-Ocean-Sampling_GS-27-01-01-1...    56   0.005  1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    36   0.011  12
(CR450718) Zebrafish DNA sequence from clone CH211-246I5 in ...    50   0.32   1
(BX936342) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.32   1
(CP000395) Borrelia afzelii PKo, complete genome.                  42   0.46   20
(AC201146) Strongylocentrotus purpuratus clone R3-14E1, WORK...    38   0.61   9
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    40   0.65   10
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.87   17
(EJ088364) 1095460136407 Global-Ocean-Sampling_GS-26-01-01-1...    34   0.88   2
(AM463749) Vitis vinifera contig VV78X070140.6, whole genome...    48   1.3    1
(EJ777161) 1093006500520 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.3    1
(EJ765963) 1092963223477 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.3    1
(EJ430999) 1093015255306 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.3    1
(EJ260157) 1095349033515 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.3    1
(BU762900) sas34f05.y1 Gm-c1080 Glycine max cDNA clone SOYBE...    48   1.3    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   1.9    16
(ER445511) 1092963828028 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.1    2
(EJ563017) 1092959676779 Global-Ocean-Sampling_GS-29-01-01-1...    40   2.1    2
(AC139715) Homo sapiens BAC clone RP11-399D2 from 4, complet...    34   2.5    2
(AC144514) Medicago truncatula clone mth2-12j2, complete seq...    42   3.4    4
(AX346043) Sequence 1114 from Patent WO0200928.                    42   3.7    2
(AC130588) Rattus norvegicus clone CH230-332A21, WORKING DRA...    40   4.1    9
(AC123423) Rattus norvegicus clone CH230-453L13, *** SEQUENC...    42   4.9    6
(DQ834384) Infectious bronchitis virus strain M41, complete ...    46   5.0    1
(AY851295) Avian infectious bronchitis virus strain Mass 41,...    46   5.0    1
(AY641576) Avian infectious bronchitis virus isolate Peafowl...    46   5.0    1
(AY514485) Infectious bronchitis virus serotype California 9...    46   5.0    1
(AP006087) Lotus japonicus genomic DNA, chromosome 3, clone:...    46   5.0    1
(AC146560) Medicago truncatula chromosome 6 clone mth2-12g6,...    46   5.0    1
(AC129852) Homo sapiens X BAC RP11-540E20 (Roswell Park Canc...    46   5.0    1
(AC129851) Homo sapiens X BAC RP11-669P14 (Roswell Park Canc...    46   5.0    1
(AC120585) Rattus norvegicus clone CH230-29O17, *** SEQUENCI...    46   5.0    1
(AP007577) Lotus japonicus genomic DNA, chromosome 3, clone:...    46   5.0    1
(AC226668) Monodelphis domestica clone VMRC18-590J3, WORKING...    46   5.0    1
(AC226666) Monodelphis domestica clone VMRC18-517A12, WORKIN...    46   5.0    1
(AC193643) Zea mays chromosome 5 clone CH201-334L13; ZMMBBc0...    46   5.0    1
(AY809810) Schistosoma japonicum SJCHGC05641 protein mRNA, p...    46   5.0    1
(EK308097) 1095462387612 Global-Ocean-Sampling_GS-31-01-01-1...    46   5.0    1
(EK188895) 1095460012165 Global-Ocean-Sampling_GS-31-01-01-1...    46   5.0    1
(EJ982929) 1093022167120 Global-Ocean-Sampling_GS-30-02-01-1...    46   5.0    1
(EJ956390) 1093018975010 Global-Ocean-Sampling_GS-30-02-01-1...    46   5.0    1
(EJ142850) 1092343666638 Global-Ocean-Sampling_GS-27-01-01-1...    46   5.0    1
(EJ091792) 1095460195030 Global-Ocean-Sampling_GS-26-01-01-1...    46   5.0    1
(EJ074728) 1095458113088 Global-Ocean-Sampling_GS-26-01-01-1...    46   5.0    1
(ED799135) MG__Ba0049F10f MG__Ba Mimulus guttatus genomic, g...    46   5.0    1
(DX115885) OG_ABa0140O03.r OG_ABa Oryza granulata genomic cl...    46   5.0    1
(CR303454) mte1-22G14RM1 BAC end, cultivar Jemalong A17 of M...    46   5.0    1
(CE580618) tigr-gss-dog-17000366253081 Dog Library Canis lup...    46   5.0    1
(CV740055) SJAL_024_67.T3 SJL Schistosoma japonicum cDNA, mR...    46   5.0    1
(CV673692) RET7SJ_21D04.T7 Schistosoma japonicum reverse cDN...    46   5.0    1
(CD077443) MA3-9999U-D127-D11-U.G MA3-0001 Schistosoma manso...    46   5.0    1
(CA910290) PCSC19078 Scarlet Runner Bean Suspensor Region Tr...    46   5.0    1
(FG913802) UCRVU08_CCNS9014_b1 Cowpea IT97K-461-4 Mixed Tiss...    46   5.0    1
(FG908992) UCRVU08_CCNS6419_g1 Cowpea IT97K-461-4 Mixed Tiss...    46   5.0    1
(FG908991) UCRVU08_CCNS6419_b1 Cowpea IT97K-461-4 Mixed Tiss...    46   5.0    1
(FF539578) MOPAS41TF MOP Vigna unguiculata cDNA 5', mRNA seq...    46   5.0    1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    46   5.0    1
(AL354945) Human DNA sequence from clone RP11-59K17 on chrom...    40   5.5    6
(AP001794) Homo sapiens genomic DNA, chromosome 18q12 clone:...    32   6.5    10
(AC106718) Homo sapiens 3 BAC RP11-30H24 (Roswell Park Cance...    36   7.8    5
(EK275743) 1095462276207 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    2
(AL096859) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    42   9.6    5
(AM657878) Entamoeba moshkovskii FIC GSS, clone mosh071h11.p1k.    38   9.6    3

>(BJ383212) Dictyostelium discoideum cDNA clone:ddc52b09, 3' end,
            single read.
          Length = 687

 Score = 1360 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Minus


Query: 1245 aatgaatgataccaactctagtgtgatcacttttgagaagattcaaggcaaacgttttga 1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  aatgaatgataccaactctagtgtgatcacttttgagaagattcaaggcaaacgttttga 628


Query: 1305 tgaggatgccataaagagatttataaagggtgcaagtttcaccattcaagaggagatgtt 1364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  tgaggatgccataaagagatttataaagggtgcaagtttcaccattcaagaggagatgtt 568


Query: 1365 tgtagatagtgtagatataccaaatgtaatgaaacgtttcaatcaattgactggtgtcgg 1424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  tgtagatagtgtagatataccaaatgtaatgaaacgtttcaatcaattgactggtgtcgg 508


Query: 1425 gttaactagtagagcattgagagagatcaccaaacatgatggtgttagattggtacaatc 1484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  gttaactagtagagcattgagagagatcaccaaacatgatggtgttagattggtacaatc 448


Query: 1485 cgatgtaaagagaatgaaagccaaagttaaggcacatcatttggtggagtttgccgaagg 1544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  cgatgtaaagagaatgaaagccaaagttaaggcacatcatttggtggagtttgccgaagg 388


Query: 1545 tatggttctttgggatgaagcaaagaaggagaaatcaagagaaaagatagagggtgcttt 1604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387  tatggttctttgggatgaagcaaagaaggagaaatcaagagaaaagatagagggtgcttt 328


Query: 1605 ctgtccttgtccagtgacattgatcaatggtgatgctgccgataaaatcacagatcgtct 1664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  ctgtccttgtccagtgacattgatcaatggtgatgctgccgataaaatcacagatcgtct 268


Query: 1665 ctttggcttggcagatgaccattttcgtagcgcattatcagtttcaccgcattcagcaga 1724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267  ctttggcttggcagatgaccattttcgtagcgcattatcagtttcaccgcattcagcaga 208


Query: 1725 ggtcactgcaaattgggcaatgatgttgatggaaagagcaagaatgtcaagagaatgtgt 1784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207  ggtcactgcaaattgggcaatgatgttgatggaaagagcaagaatgtcaagagaatgtgt 148


Query: 1785 gccacaagaggcggatctctattataatgccgccgaggaaaaggttagatcatgtttggc 1844
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147  gccacaagaggcggatctctattataatgccgccgaggaaaaggttagatcatgtttggc 88


Query: 1845 cgatggtggtaaaccaaagattgcattggagaatgtattattagagtattcggaattcct 1904
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87   cgatggtggtaaaccaaagattgcattggagaatgtattattagagtattcggaattcct 28


Query: 1905 tgtatttggggtactaccaccgacca 1930
            ||||||||||||||||||||||||||
Sbjct: 27   tgtatttggggtactaccaccgacca 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,172,079,355
Number of extensions: 127075357
Number of successful extensions: 10390097
Number of sequences better than 10.0: 72
Length of query: 1930
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1906
Effective length of database: 97,308,875,965
Effective search space: 185470717589290
Effective search space used: 185470717589290
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Contig-U11901-1Q.Seq.d
         (1930 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_61(AC116979|pid:none) Dictyostelium discoideum chromoso...   184   1e-44
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso...   161   7e-38
AY220914_1(AY220914|pid:none) Dictyostelium discoideum ComB (com...   119   3e-25
AC116919_8(AC116919|pid:none) Dictyostelium discoideum chromosom...   110   2e-22
AC116977_59(AC116977|pid:none) Dictyostelium discoideum chromoso...   102   5e-20
(O15818) RecName: Full=Protein KIAA0664 homolog;                       66   4e-09
AF101078_1(AF101078|pid:none) Caenorhabditis elegans CLU-1 (clu-...    58   1e-06
(Q17N71) RecName: Full=Protein KIAA0664 homolog;                       57   2e-06
(A8PJX4) RecName: Full=Protein KIAA0664 homolog;                       57   2e-06
(Q291J5) RecName: Full=Protein KIAA0664 homolog;                       55   7e-06
(A0JMD0) RecName: Full=Protein KIAA0664 homolog;  &BC125829_1(BC...    54   2e-05
(A1ZAB5) RecName: Full=Protein KIAA0664 homolog;  &AE013599_2332...    54   2e-05
BT011344_1(BT011344|pid:none) Drosophila melanogaster RH51925 fu...    53   5e-05
(A8XAA9) RecName: Full=Protein KIAA0664 homolog;                       53   5e-05
BC063786_1(BC063786|pid:none) Homo sapiens KIAA0664, mRNA (cDNA ...    53   5e-05
BC072573_1(BC072573|pid:none) Mus musculus RIKEN cDNA 1300001I01...    52   8e-05
AK125717_1(AK125717|pid:none) Homo sapiens cDNA FLJ43729 fis, cl...    52   1e-04
AL607024_2(AL607024|pid:none) Mouse DNA sequence from clone RP23...    52   1e-04
AK154146_1(AK154146|pid:none) Mus musculus NOD-derived CD11c +ve...    52   1e-04
AK154925_1(AK154925|pid:none) Mus musculus NOD-derived CD11c +ve...    52   1e-04
BC060069_1(BC060069|pid:none) Mus musculus RIKEN cDNA 1300001I01...    52   1e-04
(A6SFG0) RecName: Full=Protein TIF31 homolog;                          52   1e-04
AK157310_1(AK157310|pid:none) Mus musculus activated spleen cDNA...    52   1e-04
CR627449_1(CR627449|pid:none) Homo sapiens mRNA; cDNA DKFZp686L0...    52   1e-04
AB093256_1(AB093256|pid:none) Mus musculus premature mRNA for mK...    52   1e-04
(Q8CHD9) RecName: Full=Protein KIAA0664;                               52   1e-04
(A7ENU3) RecName: Full=Protein TIF31 homolog;                          52   1e-04
AK036540_1(AK036540|pid:none) Mus musculus adult male bone cDNA,...    52   1e-04
S40989(S40989)hypothetical protein F55H2.6 - Caenorhabditis eleg...    51   1e-04
(A6R8I2) RecName: Full=Protein TIF31 homolog;                          51   2e-04
CR548612_176(CR548612|pid:none) Paramecium tetraurelia macronucl...    50   2e-04
(B0XXS1) RecName: Full=Protein TIF31 homolog;  &(Q4WXV2) RecName...    50   3e-04
(A1D6Y7) RecName: Full=Protein TIF31 homolog;                          50   4e-04
BC094446_1(BC094446|pid:none) Mus musculus RIKEN cDNA 1300001I01...    49   5e-04
(A4R962) RecName: Full=Protein TIF31 homolog;                          49   7e-04
(A1CKI4) RecName: Full=Protein TIF31 homolog;                          49   7e-04
CU633900_426(CU633900|pid:none) Podospora anserina genomic DNA c...    49   9e-04
(Q2UKX8) RecName: Full=Protein TIF31 homolog;  &AP007155_547(AP0...    47   0.002
(A2QDB9) RecName: Full=Protein TIF31 homolog;  &AM270014_23(AM27...    47   0.002
(Q1E101) RecName: Full=Protein TIF31 homolog;                          47   0.003
FN357539_16(FN357539|pid:none) Schistosoma mansoni genome sequen...    46   0.006
CR382133_133(CR382133|pid:none) Debaryomyces hansenii strain CBS...    45   0.009
CR382128_754(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.009
CP000127_2335(CP000127|pid:none) Nitrosococcus oceani ATCC 19707...    44   0.028
AY811542_1(AY811542|pid:none) Schistosoma japonicum SJCHGC03359 ...    44   0.028
(Q6CIN0) RecName: Full=Protein TIF31 homolog;  &CR382126_1081(CR...    44   0.028
(A3GG12) RecName: Full=Protein TIF31 homolog;                          44   0.028
CU928168_318(CU928168|pid:none) Kluyveromyces thermotolerans str...    41   0.14
CP000269_522(CP000269|pid:none) Janthinobacterium sp. Marseille,...    39   0.52
CP000924_487(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    37   2.6
FM992688_465(FM992688|pid:none) Candida dubliniensis CD36 chromo...    37   2.6
CP000923_948(CP000923|pid:none) Thermoanaerobacter sp. X514, com...    37   2.6
CP000745_130(CP000745|pid:none) Methanococcus maripaludis C7, co...    37   3.4
CP000246_1368(CP000246|pid:none) Clostridium perfringens ATCC 13...    36   4.4
(A9KJI2) RecName: Full=50S ribosomal protein L5;  &CP000885_3611...    36   4.4
DQ927305_30(DQ927305|pid:none) Tetrahymena pigmentosa strain UM1...    36   5.7
CP001348_1339(CP001348|pid:none) Clostridium cellulolyticum H10,...    35   7.5
(Q5K7G8) RecName: Full=Protein TIF31 homolog;  &AE017353_251(AE0...    35   9.8
CP001098_552(CP001098|pid:none) Halothermothrix orenii H 168, co...    35   9.8

>AC116979_61(AC116979|pid:none) Dictyostelium discoideum chromosome 2
            map 6445720-6776760 strain AX4, complete sequence.
          Length = 1445

 Score =  184 bits (467), Expect = 1e-44
 Identities = 91/160 (56%), Positives = 119/160 (74%), Gaps = 3/160 (1%)
 Frame = +2

Query: 542  WNAEFQNLV-YNNKIEGYRELSKLAHDFVYTAKIYGKVIISELTLPLHLKTIKPINIGGV 718
            W++EFQ L+  ++ +E +  LS L HDFVY A+ YG++IISE  L   LKTIKP+++GG+
Sbjct: 302  WSSEFQRLLEMDDCLEKFERLSSLEHDFVYAAESYGRIIISENFLANELKTIKPVSVGGI 361

Query: 719  AGGHKYIALGILFKLALDSQ--GLYVGDQNAMKAAGHELKGLMSYYNCRVEGLHHPLMAL 892
            AGG KYI  GILFK AL+++  GLY  D+NAMK A HEL G  S+ NC V+GLH PLMA
Sbjct: 362  AGGEKYIVQGILFKFALENEAFGLYGNDENAMKTAAHELNGCASFLNCGVKGLHVPLMAF 421

Query: 893  IDYRGYRLVAMSLLPINSDTIVYGSSDGGISVHNSDEDFN 1012
            IDYRG+RL+AMSLLPI+  +++YGS D G +VH S+  FN
Sbjct: 422  IDYRGFRLMAMSLLPISKKSLIYGSCDAGQTVHTSNNIFN 461

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 57/278 (20%), Positives = 124/278 (44%), Gaps = 2/278 (0%)
 Frame = +1

Query: 1003 GFQSXXXXEIMARTMKSEMMQLFRSKMKTADTPSEEPFKEVVVQYLNALF-KYEDSVTTP 1179
            G++     E + RT+KS   +L R +M+    PS+ P++ +++++LN LF +Y+D
Sbjct: 632  GYKRFFTIEAIVRTLKSLARELLRREMRNIHLPSDYPYRSLLLKFLNLLFDEYKDKTE-- 689

Query: 1180 GCKVWPRSLRKSIEKKFFGTFQMNDTNSSVITFEKIQGKRFDEDAIKRFIKGASFTI-QE 1356
               +W + + + +EKKF   F  N+ N+     E  +         +  IK    T+
Sbjct: 690  --YIWNKIILEKMEKKFQNIF--NNVNTEKEEPELNENSPKLPVTPQEIIKNLLTTLPTR 745

Query: 1357 EMFVDSVDIPNVMKRFNQLTGVGLTSRALREITKHDGVRLVQSDVKRMKAKVKAHHLVEF 1536
            EM         ++K+F +  G+ ++  A+ +    D    V +D+K +K      +++++
Sbjct: 746  EM---------ILKKFCKSIGLVISKIAISQFNNSDSFVFVDTDIKEIKTLSTRLNVIDY 796

Query: 1537 AEGMVLWDEAKKEKSREKIEGAFCPCPVTLINGDAADKITDRLFGLADDHFRSALSVSPH 1716
            A+GM L+ ++                    +    +D    RL  ++ +    ++    +
Sbjct: 797  ADGMSLYYKS--------------------MASGLSDTSKHRLLTISRERLEQSILTMNN 836

Query: 1717 SAEVTANWAMMLMERARMSRECVPQEADLYYNAAEEKV 1830
            + ++    A +L   A+ S++   ++  LYY  A +K+
Sbjct: 837  NFQIVIQLAKVLTLLAKTSQDYTKKQ--LYYVLANKKL 872

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,873,390,844
Number of extensions: 57015021
Number of successful extensions: 192236
Number of sequences better than 10.0: 59
Number of HSP's gapped: 191842
Number of HSP's successfully gapped: 62
Length of query: 643
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 508
Effective length of database: 614,245,399
Effective search space: 312036662692
Effective search space used: 312036662692
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.21  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U11901-1 is cyt
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0