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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01844-1
Contig ID Contig-U01844-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Contig-U01844-1Q.Seq.d
TTGGTTTTTATTTAAATTTATTATTAATTATATAAACTTTTTTTTTTATT
TTTTACTTTTTTTATATAAAATTATACTTTTTTACTTTTTTTATCTTTTT
TTTTTTTTTTTTTTTTTTAACAACTTCAATTAATTTATTAACACTACATA
TATATATAAAAAAAAAAAAAAAAAAAAAAAAAAATAATTTTCAATAATTT
TAAAAATTATTTTTTTTTAAAGAAAAATGTTCAGATGTTCATCTTCATCA
TTACTTTGTGGTAATAATGTTACATTTACAATNGTTTATAATACTCAGCC
TGGTGAAATTTTATTTATAACTGGATCAATGAACCAATTGGGTGAATGGG
ATACATCAAAAGCAAAAAGAATGACATGGAATATTGGTAATTTATGGGAT
GCAAGTGTAGGATTCCCAGAATCAGTATATATTCAATATAAATACTTGGT
ATACAATGAAATTAATAAAACTTATCGTTGGGAATCAATTGAGAATCGAC
AACTCA----------CCCNGGTTNTATATATATTTNTTTTTATATATTT
CTTTTTTTGTTTCCCCATTTTTTTTTTTTTTTTTTTATTTATACCAAAAA
CAAAAAAAAAAAAAAAAAAAAATTCTATTATTAACCACATCTTCAATCAT
CTGTTTATATATAGAAATTTATAATAAAAGTTAAAATCAATCAACAACCT
ATTCCCAGTTTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 736
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1126493
End point 1125832
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U01844
List of clone(s) 

est1=SSJ117F,1,190
est2=SSH166F,35,507
est3=SSJ117Z,508,738
est4=VFC796F,623,729
Translated Amino Acid sequence 
wflfkfiinyinfffyfllflykiilfyffylfffffffnnfn*finttyiykkkkkkkk
k*fsiilkiiff*RKMFRCSSSSLLCGNNVTFTXVYNTQPGEILFITGSMNQLGEWDTSK
AKRMTWNIGNLWDASVGFPESVYIQYKYLVYNEINKTYRWESIENRQL---

---PXXYIYXFLYISFFVSPFFFFFFYLYQKQKKKKKKILLLTTSSIICLYIEIYNKS*n
qsttysqfiikkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
lvfi*iyy*lyklfflfftffi*nytfllflsfffffff*qlqliy*hyiyi*kkkkkkk
kiifnnfknyfflkknvqmfifiitlw**cyiynxl*ysaw*nfiynwinepig*mgyik
skkndmeyw*fmgckcriprisiysi*ilgiq*n**nlslgin*estt---

---PXXYIYXFLYISFFVSPFFFFFFYLYQKQKKKKKKILLLTTSSIICLYIEIYNKS*n
qsttysqfiikkkkkkkkk

Frame B:
wflfkfiinyinfffyfllflykiilfyffylfffffffnnfn*finttyiykkkkkkkk
k*fsiilkiiff*RKMFRCSSSSLLCGNNVTFTXVYNTQPGEILFITGSMNQLGEWDTSK
AKRMTWNIGNLWDASVGFPESVYIQYKYLVYNEINKTYRWESIENRQL---

---pgxiyixfyiflflfphffffffiytknkkkkkkkfyy*phlqssvyi*kfiikvki
nqqpipsl**kkkkkkkkk

Frame C:
gfylnlllii*tfffifyffyiklyfftffiffffffflttsinlltlhiyikkkkkkkk
nnfq*f*klfffkekcsdvhlhhyfvvimlhlqxfiilslvkfyl*ldq*tnwvngihqk
qke*hgilviygmqv*dsqnqyifnintwytmkliklivgnqlridns---

---xvxyifxfiyfffcfpiffffflfipktkkkkkknsiinhifnhlfiyrnl**klks
innlfpvynkkkkkkkkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U01844-1 (Contig-U01844-1Q)
/CSM_Contig/Contig-U01844-1Q.Seq.d
         (746 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Conti...   579  e-165
Contig-U14856-1 (Contig-U14856-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U05173-1 (Contig-U05173-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13677-1 (Contig-U13677-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U12424-1 (Contig-U12424-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11622-1 (Contig-U11622-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Conti...    36  0.052

>Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Contig-U01844-1Q.Seq.d
          Length = 746

 Score =  579 bits (292), Expect = e-165
 Identities = 313/322 (97%)
 Strand = Plus / Plus

                                                                       
Query: 185 taattttcaataattttaaaaattannnnnnnnnaaagaaaaatgttcagatgttcatct 244
           |||||||||||||||||||||||||         ||||||||||||||||||||||||||
Sbjct: 185 taattttcaataattttaaaaattatttttttttaaagaaaaatgttcagatgttcatct 244

                                                                       
Query: 245 tcatcattactttgtggtaataatgttacatttacaatngtttataatactcagcctggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcatcattactttgtggtaataatgttacatttacaatngtttataatactcagcctggt 304

                                                                       
Query: 305 gaaattttatttataactggatcaatgaaccaattgggtgaatgggatacatcaaaagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaaattttatttataactggatcaatgaaccaattgggtgaatgggatacatcaaaagca 364

                                                                       
Query: 365 aaaagaatgacatggaatattggtaatttatgggatgcaagtgtaggattcccagaatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaagaatgacatggaatattggtaatttatgggatgcaagtgtaggattcccagaatca 424

                                                                       
Query: 425 gtatatattcaatataaatacttggtatacaatgaaattaataaaacttatcgttgggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtatatattcaatataaatacttggtatacaatgaaattaataaaacttatcgttgggaa 484

                                 
Query: 485 tcaattgagaatcgacaactca 506
           ||||||||||||||||||||||
Sbjct: 485 tcaattgagaatcgacaactca 506


 Score =  186 bits (94), Expect = 2e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 623 ttctattattaaccacatcttcaatcatctgtttatatatagaaatttataataaaagtt 682
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttctattattaaccacatcttcaatcatctgtttatatatagaaatttataataaaagtt 682

                                             
Query: 683 aaaatcaatcaacaacctattcccagtttataat 716
           ||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaatcaatcaacaacctattcccagtttataat 716


 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                  
Query: 119 aacaacttcaattaatttattaacactacatatatatat 157
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aacaacttcaattaatttattaacactacatatatatat 157


 Score = 73.8 bits (37), Expect = 2e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 1  ttggtttttatttaaatttattattaattatataaac 37
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttggtttttatttaaatttattattaattatataaac 37


>Contig-U14856-1 (Contig-U14856-1Q) /CSM_Contig/Contig-U14856-1Q.Seq.d
          Length = 570

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 119 aacaacttcaattaatttattaa 141
           |||||||||||||||||| ||||
Sbjct: 500 aacaacttcaattaattttttaa 522


>Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Contig-U05178-1Q.Seq.d
          Length = 825

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 5   tttttatttaaatttattattaa 27
           ||||| |||||||||||||||||
Sbjct: 732 tttttttttaaatttattattaa 710


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,802
Number of Sequences: 6905
Number of extensions: 14802
Number of successful extensions: 2010
Number of sequences better than 10.0: 238
length of query: 746
length of database: 5,674,871
effective HSP length: 16
effective length of query: 730
effective length of database: 5,564,391
effective search space: 4062005430
effective search space used: 4062005430
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 9
Homology vs DNA 
Query= Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Contig-U01844-1Q.Seq.d
         (746 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...   537   e-157  4
(C90761) Dictyostelium discoideum slug cDNA, clone SSJ117.        186   8e-43  1
(AU073967) Dictyostelium discoideum slug cDNA, clone SSJ117.       78   3e-25  2
(BJ412102) Dictyostelium discoideum cDNA clone:ddv6p23, 5' e...   103   9e-18  1
(AU073426) Dictyostelium discoideum slug cDNA, clone SSH166.       78   5e-10  1
(CX676435) UCRCS08_69F09_g Parent Washington Navel Orange Ca...    52   0.007  2
(AG381938) Mus musculus molossinus DNA, clone:MSMg01-192C19....    54   0.008  1
(CR925880) Zebrafish DNA sequence from clone DKEY-187E18.          52   0.031  1
(AY654900) Kluyveromyces lactis mitochondrion, complete genome.    40   0.032  4
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    32   0.041  11
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    36   0.080  8
(AM486684) Vitis vinifera contig VV78X090530.7, whole genome...    34   0.10   4
(CU463971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.11   5
(DQ532090) Havaika cf. pubens MAA-2006 voucher HavOW158 16S ...    50   0.12   1
(AX349036) Sequence 494 from Patent WO0202807.                     38   0.24   4
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.28   10
(FC812603) Sr_pASP6_011g19_SP6 S. ratti mixed stage pAMP Str...    36   0.29   2
(AC147363) Medicago truncatula clone mth2-17c13, complete se...    34   0.39   7
(DQ532082) Habronattus sp. MAA-2006 16S ribosomal RNA gene, ...    46   0.40   2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    40   0.42   6
(FJ411411) Acyrthosiphon pisum strain 5A mitochondrion, comp...    36   0.46   4
(BX255917) Zebrafish DNA sequence from clone DKEY-1H6 in lin...    48   0.49   1
(DQ532094) Havaika cf. pubens MAA-2006 voucher HavWM88 16S r...    48   0.49   1
(DQ532093) Havaika cf. pubens MAA-2006 voucher HavWM159 16S ...    48   0.49   1
(DQ532087) Havaika cf. pubens MAA-2006 voucher HavOK8 16S ri...    48   0.49   1
(DQ532085) Havaika cf. pubens MAA-2006 voucher HavOK23 16S r...    48   0.49   1
(AC026784) Homo sapiens chromosome 5 clone CTD-2138O14, comp...    48   0.49   1
(AC114317) Homo sapiens chromosome 5 clone RP11-379H24, WORK...    48   0.49   1
(BX901924) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.49   1
(ET110504) QM0AAC19AD01RM2 CCH3 Citrus clementina genomic cl...    48   0.49   1
(ET073459) QM0AAA8BF12RM1 CCL1 Citrus clementina genomic clo...    48   0.49   1
(EI481454) PV_GBa0094B09.f PV_GBa Phaseolus vulgaris genomic...    48   0.49   1
(EI456654) PV_GBa0058H01.r PV_GBa Phaseolus vulgaris genomic...    48   0.49   1
(EI450757) PV_GBa0050D03.r PV_GBa Phaseolus vulgaris genomic...    48   0.49   1
(EI369185) POTA731TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.49   1
(ED232373) AUAC-aah35d07.g1 Ascaris suum whole genome shotgu...    48   0.49   1
(AG951646) Drosophila sechellia DNA, clone: DSE1-003D23.F.fa...    48   0.49   1
(CG432109) Bg263-T3 Glomus intraradices Bgl II library (in p...    48   0.49   1
(CE419572) tigr-gss-dog-17000362725801 Dog Library Canis lup...    48   0.49   1
(EY444735) CBAY7269.fwd CBAY Tubifex tubifex Embryos and juv...    48   0.49   1
(EY444411) CBAY7036.fwd CBAY Tubifex tubifex Embryos and juv...    48   0.49   1
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    38   0.54   8
(FG286270) 1108770714425 New World Screwworm Egg 9261 ESTs C...    32   0.60   3
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.65   13
(DB760037) Apis mellifera head cDNA, RIKEN full-length enric...    40   0.79   2
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       32   0.89   2
(BZ397490) EINBQ92TF EI_10_12_KB Entamoeba invadens genomic ...    38   0.90   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.99   8
(AL035476) Plasmodium falciparum MAL4P3.                           36   1.0    6
(DX533921) GH_MBb0081G21r GH_MBb Gossypium hirsutum genomic ...    36   1.1    3
(EX613199) 255383128 Pea aphid whole body normalized full le...    36   1.1    2
(EX628230) 255450709 Pea aphid whole body normalized full le...    36   1.1    2
(FF319394) 280402625 Pea aphid whole body normalized full le...    36   1.1    2
(CN755987) ID0AAA17BF10RM1 ApMS Acyrthosiphon pisum cDNA clo...    36   1.2    2
(CN755397) ID0AAA15CH11RM1 ApMS Acyrthosiphon pisum cDNA clo...    36   1.2    2
(EK170453) 1095458071445 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.2    2
(BF617318) HVSMEc0015K09f Hordeum vulgare seedling shoot EST...    38   1.3    2
(DV745014) ID0AAG15DC04CM1 ID0AAG Acyrthosiphon pisum cDNA c...    36   1.3    2
(EC270373) TT1C113TV Tetrahymena thermophila SB210 cDNA libr...    36   1.3    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   1.5    9
(AM446338) Vitis vinifera contig VV78X011214.5, whole genome...    42   1.5    2
(AF279134) Dictyostelium discoideum bifunctional glycosyltra...    34   1.8    3
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   1.9    10
(DX559803) GH_MBb0035E15r GH_MBb Gossypium hirsutum genomic ...    36   1.9    2
(DQ533708) Stomoxys calcitrans mitochondrion, partial genome.      32   1.9    5
(CU638744) Podospora anserina genomic DNA chromosome 6, supe...    46   1.9    1
(AP000736) Arabidopsis thaliana genomic DNA, chromosome 3, T...    46   1.9    1
(AC027033) Arabidopsis thaliana chromosome 1 BAC F21N10 geno...    46   1.9    1
(DQ532084) Habronattus rufescens voucher HanMN105 16S riboso...    46   1.9    1
(AC098369) Rattus norvegicus clone CH230-2C20, *** SEQUENCIN...    46   1.9    1
(CU972423) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CU607015) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(AC094233) Rattus norvegicus clone CH230-3B21, *** SEQUENCIN...    46   1.9    1
(AC091480) Rattus norvegicus clone CH230-1P23, *** SEQUENCIN...    46   1.9    1
(AC172297) Atelerix albiventris clone LB4-439K13, WORKING DR...    46   1.9    1
(ER485486) 1093015295489 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.9    1
(ER483098) 1093015279541 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.9    1
(ER475521) 1093015231636 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.9    1
(EK215057) 1095460116010 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    1
(EK139079) 1095454061663 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    1
(CL533444) trib009xg22.b1 T. reesei HindIII BAC library Hypo...    46   1.9    1
(BZ398527) EINAO35TR EI_10_12_KB Entamoeba invadens genomic ...    46   1.9    1
(BZ391420) EINBB30TF EI_10_12_KB Entamoeba invadens genomic ...    46   1.9    1
(DT227462) JGI_CAAT3217.rev CAAT Pimephales promelas brain 7...    46   1.9    1
(AY947399) Aedes aegypti haplotype 19 tRNA-Ile gene, partial...    34   2.1    3
(AC096900) Rattus norvegicus clone CH230-4K17, *** SEQUENCIN...    40   2.1    6
(AL035477) Plasmodium falciparum MAL4P4.                           36   2.2    7
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    38   2.2    9
(BD428876) Method and nucleic acids for pharmacogenomic meth...    36   2.2    3
(AX348355) Sequence 50 from Patent WO0202806.                      36   2.2    3
(AX344552) Sequence 3 from Patent WO0200932.                       40   2.3    7
(AF174352) Praon volucre 16S ribosomal RNA gene, partial seq...    42   2.4    2
(BX950217) Zebrafish DNA sequence from clone DKEY-192L17 in ...    36   2.4    5
(AY466382) Dictyostelium discoideum uridine kinase uracil ph...    36   2.5    2
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    32   2.7    9
(AC184938) Bos taurus clone CH240-310D22, WORKING DRAFT SEQU...    44   2.7    2
(AC152919) Medicago truncatula clone mth2-21g11, complete se...    34   3.0    5
(AC216353) Zea mays chromosome 5 clone CH201-194K18; ZMMBBc0...    44   3.2    2
(CU210852) Pig DNA sequence from clone CH242-452O20 on chrom...    44   3.2    3
(AC169641) Bos taurus clone CH240-223J17, WORKING DRAFT SEQU...    44   3.3    2
(AL978531) Danio rerio genomic clone DKEY-23O8, genomic surv...    36   3.4    2
(DN338385) LIB3188-003-P1-K1-D3 LIB3188 Canis lupus familiar...    42   3.5    2
(AC172405) Strongylocentrotus purpuratus clone R3-14L7, WORK...    34   3.6    4
(AC174379) Medicago truncatula chromosome 8 clone mth2-57p18...    38   3.6    5
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    36   3.7    5
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   3.7    2
(AC144801) Mus musculus BAC clone RP24-276M2 from chromosome...    36   3.9    4
(DD392039) Method and nucleic acids for the improved treatme...    40   4.3    2
(DD391765) Method and nucleic acids for the improved treatme...    40   4.3    2
(CQ807295) Sequence 745 from Patent WO2004035803.                  40   4.3    2
(CQ807021) Sequence 471 from Patent WO2004035803.                  40   4.3    2
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    34   4.3    7
(DQ888607) Rhagophthalmus lufengensis mitochondrion, complet...    36   4.3    4
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   4.4    8
(CU929047) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   4.4    5
(AC108721) Homo sapiens 12 BAC RP11-272B17 (Roswell Park Can...    38   4.5    6
(CS468856) Sequence 47 from Patent EP1748080.                      34   4.5    3
(CS468855) Sequence 46 from Patent EP1748080.                      34   4.5    3
(CS419333) Sequence 47 from Patent WO2006094836.                   34   4.5    3
(CS419332) Sequence 46 from Patent WO2006094836.                   34   4.5    3
(EK275393) 1095462274345 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.9    2
(AZ676669) ENTHR93TR Entamoeba histolytica Sheared DNA Entam...    40   5.1    2
(AX345574) Sequence 645 from Patent WO0200928.                     40   5.1    2
(EJ177567) 1092344106869 Global-Ocean-Sampling_GS-27-01-01-1...    36   5.2    2
(EK081817) 1092961108844 Global-Ocean-Sampling_GS-31-01-01-1...    34   5.4    3
(AZ690732) ENTLA36TR Entamoeba histolytica Sheared DNA Entam...    40   5.4    2
(AC020701) Homo sapiens BAC clone RP11-200K10 from 4, comple...    38   5.9    3
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   5.9    9
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    32   6.0    9
(BH148675) ENTPH49TF Entamoeba histolytica Sheared DNA Entam...    36   6.2    3
(AJ294725) Astasia longa complete chloroplast genome.              36   6.6    5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   6.7    11
(BH151061) ENTPP42TR Entamoeba histolytica Sheared DNA Entam...    36   6.7    3
(AJ925855) Theileria annulata EST, clone tam009a05_q1k.            42   6.8    2
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    40   6.9    6
(AZ538859) ENTEA36TRB Entamoeba histolytica Sheared DNA Enta...    36   7.2    3
(AC099701) Mus musculus chromosome 7, clone RP23-184F6, comp...    36   7.4    5
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    34   7.6    6
(CU928216) Zebrafish DNA sequence from clone CH73-138N13 in ...    44   7.6    1
(CU693488) Zebrafish DNA sequence from clone ZFOS-929E12 in ...    44   7.6    1
(CU182082) Zebrafish DNA sequence from clone DKEY-219M7.           44   7.6    1
(CT573247) Zebrafish DNA sequence from clone DKEY-179O14 in ...    44   7.6    1
(CR847998) Zebrafish DNA sequence from clone DKEY-205L13 in ...    44   7.6    1
(CR628326) Zebrafish DNA sequence from clone CH211-247N12 in...    44   7.6    1
(CR394525) Zebrafish DNA sequence from clone DKEY-24N17 in l...    44   7.6    1
(CR392330) Zebrafish DNA sequence from clone CH211-282J17 in...    44   7.6    1
(CR382288) Zebrafish DNA sequence from clone CH211-234C14 in...    44   7.6    1
(BX936437) Zebrafish DNA sequence from clone DKEYP-96G2 in l...    44   7.6    1
(BX927402) Zebrafish DNA sequence from clone CH211-262G12 in...    44   7.6    1
(BX649638) Zebrafish DNA sequence from clone CH211-64M24 in ...    44   7.6    1
(BX511109) Zebrafish DNA sequence from clone DKEY-288G16 in ...    44   7.6    1
(BX005328) Zebrafish DNA sequence from clone DKEY-63D15 in l...    44   7.6    1
(AL928714) Zebrafish DNA sequence from clone CH211-46G6 in l...    44   7.6    1
(AC156275) Mus musculus 10 BAC RP24-192F16 (Roswell Park Can...    44   7.6    1
(AC118192) Mus musculus chromosome 1, clone RP23-200C17, com...    44   7.6    1
(CU633897) Podospora anserina genomic DNA chromosome 1, supe...    44   7.6    1
(CU633463) Podospora anserina genomic DNA chromosome 6, supe...    44   7.6    1
(CU633457) Podospora anserina genomic DNA chromosome 5, supe...    44   7.6    1
(CU633455) Podospora anserina genomic DNA chromosome 4, supe...    44   7.6    1
(CU179877) Medicago truncatula chromosome 5 clone mte1-74b17...    44   7.6    1
(CU013516) Medicago truncatula chromosome 5 clone mte1-13o15...    44   7.6    1
(AJ223323) Saccharomyces cerevisiae mitochondrial tRNA-Tyr, ...    44   7.6    1
(EA771730) Sequence 14 from patent US 7381808.                     44   7.6    1
(DJ387353) Diagnosis of Diseases Associated with Apoptosis.        44   7.6    1
(DD080724) Method and nucleic acids for the differentiation ...    44   7.6    1
(DD061418) Methods and nucleic acids for the analysis of  he...    44   7.6    1
(DD061272) Methods and nucleic acids for the analysis of  he...    44   7.6    1
(BD452715) Diagnosis of Diseases Associated with tumor suppr...    44   7.6    1
(AX767540) Sequence 188 from Patent WO03044226.                    44   7.6    1
(AX767464) Sequence 112 from Patent WO03044226.                    44   7.6    1
(AX659043) Sequence 14 from Patent WO02103041.                     44   7.6    1
(AX657769) Sequence 14 from Patent WO02103042.                     44   7.6    1
(AX598980) Sequence 320 from Patent WO02077272.                    44   7.6    1
(AX598834) Sequence 174 from Patent WO02077272.                    44   7.6    1
(AX349122) Sequence 48 from Patent WO0202808.                      44   7.6    1
(AX347401) Sequence 48 from Patent WO0200705.                      44   7.6    1
(AX345056) Sequence 127 from Patent WO0200928.                     44   7.6    1
(AX281261) Sequence 3 from Patent WO0177164.                       44   7.6    1
(AX251194) Sequence 162 from Patent WO0168912.                     44   7.6    1
(EU877950) Sphaerius sp. BT0074 mitochondrion, complete genome.    44   7.6    1
(DQ532076) Havaika cf. pubens MAA-2006 voucher HavH83 16S ri...    44   7.6    1
(DQ532075) Havaika cf. pubens MAA-2006 voucher HavH137 16S r...    44   7.6    1
(DQ532073) Havaika cf. pubens MAA-2006 voucher HavH109 16S r...    44   7.6    1
(DQ532071) Havaika sp. 'morphotype D' 16S ribosomal RNA gene...    44   7.6    1
(DQ021920) Delia radicum alpha-amylase (Amy) gene, partial cds.    44   7.6    1
(AF477249) Havaika sp. MCH-2002 16S ribosomal RNA gene, part...    44   7.6    1
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    44   7.6    1
(AC205539) Tribolium castaneum 3 BAC MEDEA BAC 22J23 complet...    44   7.6    1
(AC154135) Tribolium castaneum  BAC T.cast_C40D19 (Clemson U...    44   7.6    1
(AC154132) Tribolium castaneum  BAC T.cast_C43A19 () complet...    44   7.6    1
(AC015599) Homo sapiens chromosome , clone RP11-45B19, compl...    44   7.6    1
(AC152742) Bos taurus clone CH240-5M23, WORKING DRAFT SEQUEN...    44   7.6    1
(AC146291) Homo sapiens chromosome 8 clone XXfos-8780E5 map ...    44   7.6    1
(AC138407) Homo sapiens chromosome 8 clone RP11-123P9 map 8,...    44   7.6    1
(AC138373) Homo sapiens chromosome 8 clone CTD-3060F15 map 8...    44   7.6    1
(AC137138) Homo sapiens chromosome 8 clone RP13-995P5 map 8,...    44   7.6    1
(AC135933) Rattus norvegicus clone CH230-304J22, *** SEQUENC...    44   7.6    1
(AC131508) Strongylocentrotus purpuratus clone Sp163O19, ***...    44   7.6    1
(AC128743) Rattus norvegicus clone CH230-448P5, *** SEQUENCI...    44   7.6    1
(AC124788) Homo sapiens clone RP11-1293A7, 3 ordered pieces.       44   7.6    1
(AC117042) Rattus norvegicus clone CH230-21C20, *** SEQUENCI...    44   7.6    1
(AC110484) Rattus norvegicus clone CH230-119G13, WORKING DRA...    44   7.6    1
(AC107129) Rattus norvegicus clone CH230-134M6, *** SEQUENCI...    44   7.6    1
(AC096290) Rattus norvegicus clone CH230-37M20, *** SEQUENCI...    44   7.6    1
(EU024870) Fragaria vesca subsp. americana clone fosmid 76C0...    44   7.6    1
(CU929377) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.6    1
(CU929242) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.6    1
(CU571158) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.6    1
(CR940353) Theileria annulata genomic DNA chromosome 4.            44   7.6    1
(CR388025) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.6    1
(BX942830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.6    1
(AC230146) Bos taurus clone CH240-519M10, WORKING DRAFT SEQU...    44   7.6    1
(AC226645) Tupaia belangeri clone CH275-229D1, WORKING DRAFT...    44   7.6    1
(AC203475) Chlorocebus aethiops clone CH252-402E16, WORKING ...    44   7.6    1
(AC201698) Chlorocebus aethiops clone CH252-195L14, WORKING ...    44   7.6    1
(AC171592) Bos taurus clone CH240-302J3, WORKING DRAFT SEQUE...    44   7.6    1
(AC168460) Strongylocentrotus purpuratus clone R3-35H9, WORK...    44   7.6    1
(AC012185) Homo sapiens chromosome 16 clone RP11-548B6, WORK...    44   7.6    1
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    44   7.6    1
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29...    44   7.6    1
(BH552128) BOHLI90TF BOHL Brassica oleracea genomic clone BO...    44   7.6    1
(AZ595193) 1M0407H10R Mouse 10kb plasmid UUGC1M library Mus ...    44   7.6    1
(ET105130) QM0AAC10DB06RM1 CCH3 Citrus clementina genomic cl...    44   7.6    1
(ER520045) 1093015558634 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.6    1
(EK437708) 1095521098980 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK408975) 1095505115584 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK354639) 1095468460110 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK253368) 1095460290372 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK233914) 1095460191788 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK231232) 1095460180013 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(EK212063) 1095460102155 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.6    1
(AM642335) Entamoeba dispar GSS, clone dispar92g11.p1k.            44   7.6    1
(AM633419) Entamoeba dispar GSS, clone dispar101c09.q1k.           44   7.6    1
(AL736276) Danio rerio genomic clone DKEY-13N20, genomic sur...    44   7.6    1
(EJ554842) 1092959488292 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.6    1
(EJ524290) 1092955171827 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.6    1
(EJ264047) 1095349062882 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.6    1
(EI329376) GM_WBc0068B24.f GM_WBc Glycine max genomic clone ...    44   7.6    1
(ED746737) GM_WBb0111C02.r GM_WBb Glycine max genomic clone ...    44   7.6    1
(ED730054) GM_WBb0086L20.f GM_WBb Glycine max genomic clone ...    44   7.6    1
(ED698754) GM_WBb0039F12.f GM_WBb Glycine max genomic clone ...    44   7.6    1
(DX528031) GH_MBb0029L16f GH_MBb Gossypium hirsutum genomic ...    44   7.6    1
(DE352129) Bombyx mori genomic DNA, BAC clone:BET_069_G09.         44   7.6    1
(CZ521123) GMW2-86L20a.b1 GMW2 Glycine max genomic, genomic ...    44   7.6    1
(CZ514664) GMW2-39F12a.b1 GMW2 Glycine max genomic, genomic ...    44   7.6    1
(CW958115) TcB53.4_E04_T7 Tribolium BAC library Tribolium ca...    44   7.6    1
(AG912368) Drosophila auraria DNA, clone: DAB1-007D10.F.fa, ...    44   7.6    1
(CC287575) CH261-25J22_Sp6.1 CH261 Gallus gallus genomic clo...    44   7.6    1
(BZ499891) BONLN48TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   7.6    1
(BX205369) Danio rerio genomic clone DKEY-219M7, genomic sur...    44   7.6    1
(BH724009) BOMLB42TF BO_2_3_KB Brassica oleracea genomic clo...    44   7.6    1
(EG609432) KIDNEYF101160I18 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    44   7.6    1
(EG598419) BRAINF098389G15 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    44   7.6    1
(EG598282) BRAINF098377C10 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    44   7.6    1
(EG598106) BRAINF098378C12 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    44   7.6    1
(EG597976) BRAINF098377L1 POSSUM_01-POSSUM-C-BRAIN-2KB Trich...    44   7.6    1
(EC820469) SME00002885 esmbsro2 Sawyeria marylandensis cDNA,...    44   7.6    1
(EC343277) KIDNEYF089492C16 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    44   7.6    1
(EC339710) KIDNEYF089696B17 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    44   7.6    1
(EC327457) GUTF089546H12 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    44   7.6    1
(EC317171) REPROTRACTF089701J12 POSSUM_01-POSSUM-C-REPROTRAC...    44   7.6    1
(EC305771) OVARYF089559O5 POSSUM_01-POSSUM-C-OVARY-2KB Trich...    44   7.6    1
(EC284482) BRAINF089468B23 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    44   7.6    1
(EC270738) TT1C981TV Tetrahymena thermophila SB210 cDNA libr...    44   7.6    1
(DY591670) GUTF031290B6 POSSUM_01-POSSUM-GUT-2KB Trichosurus...    44   7.6    1
(CU603543) Theobroma cacao, mRNA sequence (KZ0AAR1YO20FM1).        44   7.6    1
(CT709496) Danio rerio EST, clone ZF_mu_203d08 3'.                 44   7.6    1
(CN598676) TTE00006851 Normalized large Tetrahymena thermoph...    44   7.6    1
(CN594859) TTE00007638 Normalized large Tetrahymena thermoph...    44   7.6    1
(CN591725) TTE00007412 Normalized large Tetrahymena thermoph...    44   7.6    1
(CN589432) TTE00004545 Normalized small Tetrahymena thermoph...    44   7.6    1
(CD451890) USDA-FP_104218 Adult Alate Brown Citrus Aphid Tox...    44   7.6    1
(CD413719) Gm_ck45315 Soybean induced by Salicylic Acid Glyc...    44   7.6    1
(CD394586) Gm_ck1430 Soybean induced by Salicylic Acid Glyci...    44   7.6    1
(BQ798774) EST 943 Green Grape berries Lambda Zap II Library...    44   7.6    1
(FF570433) TTCA361TG Tetrahymena thermophila CU428 log phase...    44   7.6    1
(EY824237) PT11-C1-901-062-G09-CT.F Poncirus trifoliata leaf...    44   7.6    1
(EX200980) SGT20r3_C06 normalized library from a mix of tamm...    44   7.6    1
(EV848829) TT1EW81TV Tetrahymena thermophila SB210 cDNA libr...    44   7.6    1
(EV848828) TT1EW81TH Tetrahymena thermophila SB210 cDNA libr...    44   7.6    1
(EV833402) FTSBX04TF Tetrahymena thermophila SB210 cDNA libr...    44   7.6    1
(EV827243) FTSA214TF Tetrahymena thermophila SB210 cDNA libr...    44   7.6    1
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       44   7.6    1
(CP000312) Clostridium perfringens SM101, complete genome.         44   7.6    1
(BH139635) ENTNZ39TF Entamoeba histolytica Sheared DNA Entam...    36   7.6    3
(EU221634) Heliosperma alpestre ribosomal protein S4 (rps4) ...    36   7.8    3
(AX345953) Sequence 1024 from Patent WO0200928.                    38   8.3    2
(AC015994) Homo sapiens, clone RP11-328A22, complete sequence.     34   8.3    5
(AM463355) Vitis vinifera, whole genome shotgun sequence, co...    38   8.7    4
(AF275245) Trama rara 12S small subunit ribosomal RNA gene, ...    38   8.9    2
(AF098349) Trictena sp. 'haplotype ACT' cytochrome oxidase s...    34   9.1    3
(BJ392701) Dictyostelium discoideum cDNA clone:dds28j14, 5' ...    36   9.1    2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   9.2    7
(DQ229107) Chara vulgaris chloroplast, complete genome.            32   9.5    7
(AX345850) Sequence 921 from Patent WO0200928.                     38   9.5    2

>(AC115599) Dictyostelium discoideum chromosome 2 map 4229098-4354721
             strain AX4, complete sequence.
          Length = 125623

 Score =  537 bits (271), Expect(4) = e-157
 Identities = 276/278 (99%)
 Strand = Plus / Minus


Query: 229   gttcagatgttcatcttcatcattactttgtggtaataatgttacatttacaatngttta 288
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 78312 gttcagatgttcatcttcatcattactttgtggtaataatgttacatttacaattgttta 78253


Query: 289   taatactcagcctggtgaaattttatttataactggatcaatgaaccaattgggtgaatg 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78252 taatactcagcctggtgaaattttatttataactggatcaatgaaccaattgggtgaatg 78193


Query: 349   ggatacatcaaaagcaaaaagaatgacatggaatattggtaatttatgggatgcaagtgt 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78192 ggatacatcaaaagcaaaaagaatgacatggaatattggtaatttatgggatgcaagtgt 78133


Query: 409   aggattcccagaatcagtatatattcaatataaatacttggtatacaatgaaattaataa 468
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 78132 aggattcccagaatcagtatatattcaatataaatactttgtatacaatgaaattaataa 78073


Query: 469   aacttatcgttgggaatcaattgagaatcgacaactca 506
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 78072 aacttatcgttgggaatcaattgagaatcgacaactca 78035

 Score = 69.9 bits (35), Expect(4) = e-157
 Identities = 38/39 (97%)
 Strand = Plus / Minus


Query: 119   aacaacttcaattaatttattaacactacatatatatat 157
             |||||||||||||||||||||||| ||||||||||||||
Sbjct: 78422 aacaacttcaattaatttattaaccctacatatatatat 78384

 Score = 30.2 bits (15), Expect(4) = e-157
 Identities = 18/19 (94%)
 Strand = Plus / Minus


Query: 5     tttttatttaaatttatta 23
             ||||| |||||||||||||
Sbjct: 88387 tttttttttaaatttatta 88369

 Score = 26.3 bits (13), Expect(4) = e-157
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 683   aaaatcaatcaac 695
             |||||||||||||
Sbjct: 46278 aaaatcaatcaac 46266

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 722,179,953
Number of extensions: 49446103
Number of successful extensions: 4855562
Number of sequences better than 10.0: 298
Length of query: 746
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 722
Effective length of database: 99,340,224,878
Effective search space: 71723642361916
Effective search space used: 71723642361916
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Contig-U01844-1Q.Seq.d
         (746 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115599_35(AC115599|pid:none) Dictyostelium discoideum chromoso...   191   3e-47
CP001327_18(CP001327|pid:none) Micromonas sp. RCC299 chromosome ...    59   1e-07
CR954210_49(CR954210|pid:none) Ostreococcus tauri strain OTTH059...    59   1e-07
CP001037_13(CP001037|pid:none) Nostoc punctiforme PCC 73102, com...    56   1e-06
CP000590_49(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 ...    54   5e-06
CS627085_1(CS627085|pid:none) Sequence 35 from Patent WO20050033...    52   2e-05
GN046000_1(GN046000|pid:none) Sequence 31 from Patent WO20071496...    52   2e-05
CS627055_1(CS627055|pid:none) Sequence 5 from Patent WO200500331...    52   2e-05
AI1827(AI1827) cyclomaltodextrin glucanotransferase [imported] -...    52   2e-05
EF545003_1(EF545003|pid:none) Thermomyces lanuginosus glucoamyla...    51   4e-05
CP001330_104(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    51   4e-05
AY948384_1(AY948384|pid:none) Thermomyces lanuginosus glucoamyla...    51   4e-05
BA000045_373(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...    50   8e-05
JS0631(JS0631)alpha-amylase (EC 3.2.1.1) precursor - Pseudomonas...    50   8e-05
D10769_1(D10769|pid:none) Pseudomonas sp. gene for maltopentaose...    50   8e-05
AF497477_1(AF497477|pid:none) Nostoc sp. PCC 9229 cyclomaltodext...    49   1e-04
BX842595_13(BX842595|pid:none) Neurospora crassa DNA linkage gro...    49   1e-04
AB083161_1(AB083161|pid:none) Aspergillus awamori GA I mRNA for ...    48   4e-04
CP000304_3409(CP000304|pid:none) Pseudomonas stutzeri A1501, com...    48   4e-04
(P08704) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    47   6e-04
FB722556_1(FB722556|pid:none) Sequence 3 from Patent WO2007147835.     47   6e-04
GN046004_1(GN046004|pid:none) Sequence 35 from Patent WO20071496...    47   6e-04
GN045998_1(GN045998|pid:none) Sequence 29 from Patent WO20071496...    47   6e-04
FB722560_1(FB722560|pid:none) Sequence 7 from Patent WO2007147835.     47   6e-04
CS627083_1(CS627083|pid:none) Sequence 33 from Patent WO20050033...    47   6e-04
AY652617_1(AY652617|pid:none) Aspergillus niger strain VanTieghe...    47   8e-04
U22045_1(U22045|pid:none) Bacillus sp. alpha-amylase (Amy) gene,...    47   8e-04
GN101274_1(GN101274|pid:none) Sequence 6055 from Patent WO200903...    46   0.001
DQ526426_2(DQ526426|pid:none) Ophiostoma floccosum alpha amylase...    46   0.001
CP001330_576(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    46   0.001
(P69327) RecName: Full=Glucoamylase;          EC=3.2.1.3; AltNam...    46   0.001
EU034722_1(EU034722|pid:none) Synthetic construct glucoamylase g...    46   0.001
AM268530_1(AM268530|pid:none) Pseudomonas sp. AM1(2006) g4-amyla...    46   0.001
AY642120_1(AY642120|pid:none) Aspergillus ficuum glucoamylase (g...    46   0.001
EU247508_1(EU247508|pid:none) Gibberella moniliformis putative g...    46   0.001
CP001329_634(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    45   0.002
CP000850_2786(CP000850|pid:none) Salinispora arenicola CNS-205, ...    45   0.002
D13068_1(D13068|pid:none) Bacillus sp. KC201 gene for cyclodextr...    45   0.003
(P31746) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    45   0.003
(P26827) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    45   0.003
CP001056_2098(CP001056|pid:none) Clostridium botulinum B str. Ek...    45   0.003
AP010656_444(AP010656|pid:none) Candidatus Azobacteroides pseudo...    45   0.003
CP000667_2645(CP000667|pid:none) Salinispora tropica CNB-440, co...    45   0.003
AY528665_1(AY528665|pid:none) Synthetic construct histidine-tagg...    44   0.004
(P13507) RecName: Full=Glucan 1,4-alpha-maltotetraohydrolase;   ...    44   0.004
A32803(A32803) glucan 1,4-alpha-maltotetraohydrolase (EC 3.2.1.6...    44   0.004
D01035_1(D01035|pid:none) Aspergillus oryzae mRNA for glucoamyla...    44   0.005
AM920431_62(AM920431|pid:none) Penicillium chrysogenum Wisconsin...    44   0.005
(P36914) RecName: Full=Glucoamylase;          EC=3.2.1.3; AltNam...    44   0.005
EU974217_1(EU974217|pid:none) Zea mays clone 443128 starch bindi...    44   0.007
AJ876899_1(AJ876899|pid:none) Haloferax mediterranei amy gene fo...    43   0.009
AC135421_3(AC135421|pid:none) Oryza sativa (japonica cultivar-gr...    43   0.012
AY510449_1(AY510449|pid:none) Solanum tuberosum 4-alpha-glucanot...    43   0.012
BT060504_1(BT060504|pid:none) Zea mays full-length cDNA clone ZM...    42   0.016
(P22998) RecName: Full=Alpha-amylase;          EC=3.2.1.1; AltNa...    42   0.016
S36364(S36364;S13710;S13711;S25539)glucan 1,4-alpha-glucosidase ...    42   0.027
CS340555_1(CS340555|pid:none) Sequence 7 from Patent WO2006066596.     42   0.027
CS340565_1(CS340565|pid:none) Sequence 17 from Patent WO20060665...    42   0.027
GM720877_1(GM720877|pid:none) Sequence 12 from Patent WO20081018...    42   0.027
CS340559_1(CS340559|pid:none) Sequence 11 from Patent WO20060665...    42   0.027
X67291_1(X67291|pid:none) N.crassa gla-1 gene for glucan 1,4-alp...    42   0.027
CS340557_1(CS340557|pid:none) Sequence 9 from Patent WO2006066596.     42   0.027
CS340561_1(CS340561|pid:none) Sequence 13 from Patent WO20060665...    42   0.027
CP000088_983(CP000088|pid:none) Thermobifida fusca YX, complete ...    41   0.035
(P14804) RecName: Full=Glucoamylase;          EC=3.2.1.3; AltNam...    41   0.046
A18991_1(A18991|pid:none) Bacillus 290-3 (DSM 5850) gene for gam...    41   0.046
EF577268_1(EF577268|pid:none) Bacillus sp. WS06 AmyG (amyG) gene...    41   0.046
AP005493_8(AP005493|pid:none) Oryza sativa Japonica Group genomi...    40   0.060
AP005493_7(AP005493|pid:none) Oryza sativa Japonica Group genomi...    40   0.060
GN101278_1(GN101278|pid:none) Sequence 6059 from Patent WO200903...    40   0.060
(P30270) RecName: Full=Alpha-amylase;          EC=3.2.1.1; AltNa...    40   0.060
(P17692) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    40   0.078
CP000680_3114(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    40   0.078
CP001327_476(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    40   0.078
NRL(1CGX) Cyclomaltodextrin glucanotransferase (cgtase) (EC 2.4....    40   0.078
NRL(1CGV) Cyclomaltodextrin glucanotransferase (EC 2.4.1.19) (cg...    40   0.078
(P05618) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    40   0.078
(P09121) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    40   0.078
PDBN(1CXK)A MOL_ID: 1;MOL_ID: 1; MOLECULE: CYCLODEXTRIN-GLYCOSYL...    40   0.078
NRL(1CGW) Cyclomaltodextrin glucanotransferase (cgtase) (EC 2.4....    40   0.078
CP001056_2099(CP001056|pid:none) Clostridium botulinum B str. Ek...    40   0.078
(O30565) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    40   0.078
NRL(1CGY) Cyclomaltodextrin glucanotransferase (cgtase) (EC 2.4....    40   0.078
AF302787_3(AF302787|pid:none) Bacillus circulans putative ferric...    40   0.078
NRL(1CDG) cyclomaltodextrin glucanotransferase (EC 2.4.1.19) - B...    40   0.078
AY478421_1(AY478421|pid:none) Bacillus sp. I-5 CGTase (cgt) gene...    40   0.078
FJ664262_1(FJ664262|pid:none) Annona cherimola disproportionatin...    40   0.10
CP000573_200(CP000573|pid:none) Burkholderia pseudomallei 1106a ...    39   0.13
CP000085_213(CP000085|pid:none) Burkholderia thailandensis E264 ...    39   0.13
BX571966_146(BX571966|pid:none) Burkholderia pseudomallei strain...    39   0.13
CP000961_3383(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    39   0.13
CP000125_1656(CP000125|pid:none) Burkholderia pseudomallei 1710b...    39   0.13
CP000140_3(CP000140|pid:none) Parabacteroides distasonis ATCC 85...    39   0.13
(Q03045) RecName: Full=Glucoamylase P;          EC=3.2.1.3; AltN...    39   0.13
ALBSXF(S26588;S26590;S31284;S31283;S31282)cyclomaltodextrin gluc...    39   0.17
CR954211_16(CR954211|pid:none) Ostreococcus tauri strain OTTH059...    39   0.17
DQ473479_1(DQ473479|pid:none) Thermobifida fusca strain NTU22 al...    39   0.17
EF085922_1(EF085922|pid:none) Picea sitchensis clone WS02724_P21...    39   0.17
CP000586_179(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...    39   0.23
S15693(S15693)hypothetical protein (P8A7 5' region) - slime mold...    39   0.23
AY770575_1(AY770575|pid:none) Bacillus sp. TS1-1 cyclodextrin gl...    39   0.23
EU572721_1(EU572721|pid:none) Paenibacillus sp. JB-13 cyclodextr...    38   0.30
AM746676_4032(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    38   0.30
AP009493_5280(AP009493|pid:none) Streptomyces griseus subsp. gri...    38   0.39
AM262927_1(AM262927|pid:none) Phillyrea latifolia partial mRNA f...    37   0.50
CP001344_1115(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    37   0.86
CR626927_3520(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...    37   0.86
(P30920) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    37   0.86
NRL(1CGT) cyclomaltodextrin glucanotransferase (EC 2.4.1.19) - B...    37   0.86
AK107570_1(AK107570|pid:none) Oryza sativa Japonica Group cDNA c...    37   0.86
PDBN(1B90)A MOL_ID: 1;MOL_ID: 1; MOLECULE: BETA-AMYLASE; MOLECUL...    36   1.1
CU633901_403(CU633901|pid:none) Podospora anserina genomic DNA c...    36   1.1
(P30921) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    36   1.1
AE014296_3276(AE014296|pid:none) Drosophila melanogaster chromos...    36   1.1
(P36924) RecName: Full=Beta-amylase;          EC=3.2.1.2; AltNam...    36   1.1
CU075930_4(CU075930|pid:none) Zebrafish DNA sequence from clone ...    36   1.5
AL137189_25(AL137189|pid:none) Arabidopsis thaliana DNA chromoso...    36   1.5
CP001638_650(CP001638|pid:none) Geobacillus sp. WCH70, complete ...    36   1.5
(P14014) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    36   1.5
AY057624_1(AY057624|pid:none) Arabidopsis thaliana AT5g01260/F7J...    36   1.5
CP001575_68(CP001575|pid:none) Micromonas sp. RCC299 chromosome ...    35   1.9
BC085594_1(BC085594|pid:none) Danio rerio si:rp71-81o21.1, mRNA ...    35   1.9
AP006841_3821(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    35   1.9
AM933612_1(AM933612|pid:none) Paenibacillus sp. C36 cgt gene for...    35   2.5
BC118615_1(BC118615|pid:none) Mus musculus starch binding domain...    35   2.5
(P31747) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    35   3.3
DQ243816_1(DQ243816|pid:none) Paenibacillus sp. BL11 amylase X (...    35   3.3
A48961(A48961)beta-amylase - Bacillus cereus                           34   4.3
BC168443_1(BC168443|pid:none) Xenopus tropicalis cDNA clone MGC:...    34   4.3
AM748796_1(AM748796|pid:none) Paenibacillus pabuli cgtase gene f...    34   4.3
(Q2QTC2) RecName: Full=Phosphoglucan, water dikinase, chloroplas...    34   5.6
AB037855_1(AB037855|pid:none) Homo sapiens mRNA for KIAA1434 pro...    34   5.6
AC116984_73(AC116984|pid:none) Dictyostelium discoideum chromoso...    34   5.6
AE016825_3490(AE016825|pid:none) Chromobacterium violaceum ATCC ...    34   5.6
AE014134_685(AE014134|pid:none) Drosophila melanogaster chromoso...    34   5.6
AX453023_1(AX453023|pid:none) Sequence 1 from Patent WO0244350.        33   7.3
(P27036) RecName: Full=Cyclomaltodextrin glucanotransferase;    ...    33   9.5
AX356717_1(AX356717|pid:none) Sequence 1 from Patent WO0206508.        33   9.5
AY251462_1(AY251462|pid:none) Bacillus agaradhaerens LS-3C cyclo...    33   9.5
EU644086_1(EU644086|pid:none) Bacillus circulans strain DF 9R cy...    33   9.5
GM712409_1(GM712409|pid:none) Sequence 1 from Patent WO2008092919.     33   9.5

>AC115599_35(AC115599|pid:none) Dictyostelium discoideum chromosome
           2 map 4229098-4354721 strain AX4, complete sequence.
          Length = 146

 Score =  191 bits (484), Expect = 3e-47
 Identities = 89/91 (97%), Positives = 89/91 (97%)
 Frame = +2

Query: 233 RCSSSSLLCGNNVTFTXVYNTQPGEILFITGSMNQLGEWDTSKAKRMTWNIGNLWDASVG 412
           RCSSSSLLCGNNVTFT VYNTQPGEILFITGSMNQLGEWDTSKAKRMTWNIGNLWDASVG
Sbjct: 3   RCSSSSLLCGNNVTFTIVYNTQPGEILFITGSMNQLGEWDTSKAKRMTWNIGNLWDASVG 62

Query: 413 FPESVYIQYKYLVYNEINKTYRWESIENRQL 505
           FPESVYIQYKY VYNEINKTYRWESIENRQL
Sbjct: 63  FPESVYIQYKYFVYNEINKTYRWESIENRQL 93

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 619,351,431
Number of extensions: 9172371
Number of successful extensions: 21109
Number of sequences better than 10.0: 141
Number of HSP's gapped: 21080
Number of HSP's successfully gapped: 145
Length of query: 248
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 123
Effective length of database: 646,610,989
Effective search space: 79533151647
Effective search space used: 79533151647
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.88  gvh: 0.45  alm: 0.30  top: 1.00  tms: 0.13  mit: 0.50  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U01844-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0