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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11892-1
Contig ID Contig-U11892-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11892-1 (Contig-U11892-1Q) /CSM_Contig/Contig-U11892-1Q.Seq.d
AGCCCATTTTTGTTTTTTTTTAATTTTATTTTATTTTATTTTTATTTTTT
TTTATTTTTTTTTTTTAANTAACCNCAAATTTTTTTTTTTTTTNGAAAAT
TNCNNNNNNNNN----------ATCTCTCAAAGAAAGCCACATCTAAATG
GGAAGAAAGGTAAAGGTTGATCTCGATCAAAAAGTACCATTTGTATTTGC
AAACGCTCAAGAAGCAAAGGTTAAAAAGTCTGCTAGAGAAATTCAAGTGA
TTAAAGAGTTTCGTCAATTATTAAAAGACCATGAAAATGATAAACTCATT
AGACATAAAGAGTATGGTGGCTACTCAAAGGGGTTTCCAGAGAATCCAAG
AATCACAATGAAGGATTATAAACTTGTTGCTCAGTCTTCATTTGATCAAG
GTGGTACAAACCCATTGGCTGATCATAATGCCAGACATTAGAACTGTCTT
TGAAAAATGTTTTTTCCAAGTACACTCGCCGCTCAACCGTTGGTCAGAGG
TGATGATATCGAATTACTCTTATGGGACGTCCAAGGTTTCCCATGTAGAT
TCGCTGTCGAAGGTGGTCAATGTATCGATCCTTCAAGCTTGAAAGTTGGT
GGTAAATACTCGTTTATTGCCTTTTCAACATGTCGTTCTAAATTTGATAA
TCAAAAAATTCACGATTGTGATTGGATCATTCAAGGCCCCACAACTCCAT
CGCTATGCGCAAATTGTGGTAAAATTTGCACTTCAAAATGTACAACAAAC
TATTGTGATCGTGATTGTCAAACTGTTGATTGGCAAAGTTCATCATAAAT
TAATTTGTGGTTTAAAATCTTTTAAAGACAGATGAGATGAAACACCAATT
AAAAATTAAATTAAATAAAAAAAAATTAAATTAAATAATAAA
Gap gap included
Contig length 882
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3339714
End point 3340584
Strand (PLUS/MINUS) PLUS
Number of clones 23
Number of EST 24
Link to clone list U11892
List of clone(s) 

est1=CHO713F,1,103
est2=AHO814Z,104,833
est3=CHP646Z,109,809
est4=AHH739Z,124,815
est5=AHA785Z,126,862
est6=CHR248Z,126,736
est7=AHF612Z,136,867
est8=CHR420Z,138,865
est9=CHF421Z,150,870
est10=CHE616Z,154,865
est11=CHM846Z,154,868
est12=SHE575Z,154,756
est13=AHM323Z,155,809
est14=CHH517Z,157,810
est15=AHR373Z,211,808
est16=CHO713Z,220,691
est17=CHN303Z,227,839
est18=SHL102Z,249,874
est19=AHL677Z,371,651
est20=CHF177Z,372,756
est21=VHF244Z,405,710
est22=AHK831Z,467,760
est23=AHD672Z,468,861
est24=CHJ186Z,504,626
Translated Amino Acid sequence 
AHFCFFLILFYFIFIFFYFFFLXNXKFFFFXENXXXX---

---ISQRKPHLNGKKGKG*srsksticickrsrskg*kvc*rnssd*rvssiikrp*k**
th*t*rvwwllkgvsresknhnegl*tccsvfi*srwykpig*s*cqtlelslknvfsky
trrstvgqr**yritlmgrprfpm*ircrrwsmyrsfklesww*ilvyclfnmsf*i**s
knsrl*ldhsrphnsiamrklw*nlhfkmynkll*s*lsnc*lakfiin*fvv*nllktd
emkhqlkiklnkkkln*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
spflfffnfilfyfyfflffffx*pqiffffxkxxxx---

---ISQRKPHLNGKKGKG*srsksticickrsrskg*kvc*rnssd*rvssiikrp*k**
th*t*rvwwllkgvsresknhnegl*tccsvfi*srwykpig*s*cqtlelslknvfsky
trrstvgqr**yritlmgrprfpm*ircrrwsmyrsfklesww*ilvyclfnmsf*i**s
knsrl*ldhsrphnsiamrklw*nlhfkmynkll*s*lsnc*lakfiin*fvv*nllktd
emkhqlkiklnkkkln*ii

Frame B:
AHFCFFLILFYFIFIFFYFFFLXNXKFFFFXENXXXX---

---slkeshi*mgrkvkvdldqkvpfvfanaqeakvkksareiqvikefrqllkdhendk
lirhkeyggyskgfpenpritmkdyklvaqssfdqggtnpladhnarh*ncl*kmffpst
laaqplvrgddielllwdvqgfpcrfaveggqcidpsslkvggkysfiafstcrskfdnq
kihdcdwiiqgpttpslcancgkictskcttnycdrdcqtvdwqsss*inlwfkif*rqm
r*ntn*kln*ikkn*ik**

Frame C:
pifvff*fyfilflfffifff*xtxnffffxkixxx---

---lskkatskweer*rlisikkyhlylqtlkkqrlksllekfk*lksfvny*ktmkmin
sldiksmvatqrgfqriqesq*riinlllslhlikvvqthwliimpdirtvfekcffqvh
splnrwsevmisnysygtskvshvdslskvvnvsilqa*klvvntrllpfqhvvlnliik
kftivigsfkapqlhryaqivvkfalqnvqqtivivivklligkvhhklicglksfkdr*
detpikn*ik*kkiklnnk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11892-1 (Contig-U11892-1Q)
/CSM_Contig/Contig-U11892-1Q.Seq.d
         (892 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11892-1 (Contig-U11892-1Q) /CSM_Contig/Conti...  1435  0.0
Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11701-1 (Contig-U11701-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U08656-1 (Contig-U08656-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U08202-1 (Contig-U08202-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U06439-1 (Contig-U06439-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U05459-1 (Contig-U05459-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U05091-1 (Contig-U05091-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U09312-1 (Contig-U09312-1Q) /CSM_Contig/Conti...    32  0.98

>Contig-U11892-1 (Contig-U11892-1Q) /CSM_Contig/Contig-U11892-1Q.Seq.d
          Length = 892

 Score = 1435 bits (724), Expect = 0.0
 Identities = 724/724 (100%)
 Strand = Plus / Plus

                                                                       
Query: 123 atctctcaaagaaagccacatctaaatgggaagaaaggtaaaggttgatctcgatcaaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atctctcaaagaaagccacatctaaatgggaagaaaggtaaaggttgatctcgatcaaaa 182

                                                                       
Query: 183 agtaccatttgtatttgcaaacgctcaagaagcaaaggttaaaaagtctgctagagaaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 agtaccatttgtatttgcaaacgctcaagaagcaaaggttaaaaagtctgctagagaaat 242

                                                                       
Query: 243 tcaagtgattaaagagtttcgtcaattattaaaagaccatgaaaatgataaactcattag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcaagtgattaaagagtttcgtcaattattaaaagaccatgaaaatgataaactcattag 302

                                                                       
Query: 303 acataaagagtatggtggctactcaaaggggtttccagagaatccaagaatcacaatgaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acataaagagtatggtggctactcaaaggggtttccagagaatccaagaatcacaatgaa 362

                                                                       
Query: 363 ggattataaacttgttgctcagtcttcatttgatcaaggtggtacaaacccattggctga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggattataaacttgttgctcagtcttcatttgatcaaggtggtacaaacccattggctga 422

                                                                       
Query: 423 tcataatgccagacattagaactgtctttgaaaaatgttttttccaagtacactcgccgc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcataatgccagacattagaactgtctttgaaaaatgttttttccaagtacactcgccgc 482

                                                                       
Query: 483 tcaaccgttggtcagaggtgatgatatcgaattactcttatgggacgtccaaggtttccc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcaaccgttggtcagaggtgatgatatcgaattactcttatgggacgtccaaggtttccc 542

                                                                       
Query: 543 atgtagattcgctgtcgaaggtggtcaatgtatcgatccttcaagcttgaaagttggtgg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atgtagattcgctgtcgaaggtggtcaatgtatcgatccttcaagcttgaaagttggtgg 602

                                                                       
Query: 603 taaatactcgtttattgccttttcaacatgtcgttctaaatttgataatcaaaaaattca 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taaatactcgtttattgccttttcaacatgtcgttctaaatttgataatcaaaaaattca 662

                                                                       
Query: 663 cgattgtgattggatcattcaaggccccacaactccatcgctatgcgcaaattgtggtaa 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cgattgtgattggatcattcaaggccccacaactccatcgctatgcgcaaattgtggtaa 722

                                                                       
Query: 723 aatttgcacttcaaaatgtacaacaaactattgtgatcgtgattgtcaaactgttgattg 782
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aatttgcacttcaaaatgtacaacaaactattgtgatcgtgattgtcaaactgttgattg 782

                                                                       
Query: 783 gcaaagttcatcataaattaatttgtggtttaaaatcttttaaagacagatgagatgaaa 842
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gcaaagttcatcataaattaatttgtggtttaaaatcttttaaagacagatgagatgaaa 842

               
Query: 843 cacc 846
           ||||
Sbjct: 843 cacc 846


 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 876 ttaaattaaataataaa 892
           |||||||||||||||||
Sbjct: 876 ttaaattaaataataaa 892


>Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Contig-U14740-1Q.Seq.d
          Length = 1187

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 876 ttaaattaaataataaa 892
           |||||||||||||||||
Sbjct: 976 ttaaattaaataataaa 992


>Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Contig-U13903-1Q.Seq.d
          Length = 1303

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 277 gaccatgaaaatgataa 293
           |||||||||||||||||
Sbjct: 435 gaccatgaaaatgataa 419


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8552
Number of Sequences: 6905
Number of extensions: 8552
Number of successful extensions: 876
Number of sequences better than 10.0: 109
length of query: 892
length of database: 5,674,871
effective HSP length: 16
effective length of query: 876
effective length of database: 5,564,391
effective search space: 4874406516
effective search space used: 4874406516
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11892-1 (Contig-U11892-1Q) /CSM_Contig/Contig-U11892-1Q.Seq.d
         (892 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ354928) Dictyostelium discoideum cDNA clone:dda55n05, 3' ...  1181   0.0    2
(BJ348323) Dictyostelium discoideum cDNA clone:dda32j21, 3' ...   979   0.0    3
(BJ356388) Dictyostelium discoideum cDNA clone:dda60l04, 3' ...   759   0.0    3
(BJ384048) Dictyostelium discoideum cDNA clone:ddc48f01, 3' ...   739   0.0    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   722   0.0    3
(BJ383840) Dictyostelium discoideum cDNA clone:ddc47l12, 3' ...   722   0.0    3
(BJ378565) Dictyostelium discoideum cDNA clone:ddc32j06, 3' ...   722   0.0    3
(BJ378509) Dictyostelium discoideum cDNA clone:ddc31o04, 3' ...   722   0.0    3
(BJ408493) Dictyostelium discoideum cDNA clone:dds46c01, 3' ...   716   0.0    3
(BJ385772) Dictyostelium discoideum cDNA clone:ddc56h06, 3' ...   716   0.0    3
(BJ358098) Dictyostelium discoideum cDNA clone:dda65b19, 3' ...   714   0.0    4
(BJ351110) Dictyostelium discoideum cDNA clone:dda42g04, 3' ...   708   0.0    3
(BJ352338) Dictyostelium discoideum cDNA clone:dda46n09, 3' ...   700   0.0    3
(BJ383542) Dictyostelium discoideum cDNA clone:ddc53k12, 3' ...   696   0.0    3
(BJ380093) Dictyostelium discoideum cDNA clone:ddc37a05, 3' ...   692   0.0    3
(BJ409107) Dictyostelium discoideum cDNA clone:dds39p01, 3' ...   688   0.0    2
(BJ405998) Dictyostelium discoideum cDNA clone:dds33e19, 3' ...   674   0.0    2
(BJ385881) Dictyostelium discoideum cDNA clone:ddc56o12, 3' ...   611   0.0    2
(BJ384897) Dictyostelium discoideum cDNA clone:ddc51j03, 3' ...   478   0.0    2
(BJ378793) Dictyostelium discoideum cDNA clone:ddc32i19, 3' ...   670   0.0    2
(BJ350104) Dictyostelium discoideum cDNA clone:dda38o18, 3' ...   569   e-174  3
(BJ439705) Dictyostelium discoideum cDNA clone:ddv41g12, 3' ...   283   e-146  2
(BJ354072) Dictyostelium discoideum cDNA clone:dda52n08, 3' ...   527   e-145  1
(BJ354818) Dictyostelium discoideum cDNA clone:dda54i20, 3' ...   418   e-124  2
(BJ409105) Dictyostelium discoideum cDNA clone:dds39o01, 3' ...   375   2e-99  1
(BJ381243) Dictyostelium discoideum cDNA clone:ddc40k21, 3' ...   190   6e-44  1
(AC108322) Rattus norvegicus clone CH230-261G16, *** SEQUENC...    48   0.57   1
(AC122724) Medicago truncatula chromosome 6 clone mth2-14m14...    46   2.3    1
(AC200900) MACACA MULATTA BAC clone CH250-211O16 from chromo...    42   4.6    3
(EK001621) 1093025460490 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.0    2
(AX145718) Sequence 4440 from Patent WO0134809.                    40   6.5    2
(AR486354) Sequence 4440 from patent US 6703492.                   40   6.5    2
(AF270400) Staphylococcus epidermidis strain SR1 clone step....    40   6.5    2
(DU036710) 19341 Tomato HindIII BAC Library Solanum lycopers...    38   6.5    2
(EJ846956) 1093017859944 Global-Ocean-Sampling_GS-30-02-01-1...    42   7.1    2
(CU138478) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.2    4
(AM485060) Vitis vinifera contig VV78X213418.16, whole genom...    44   7.9    2
(AM482010) Vitis vinifera contig VV78X170789.6, whole genome...    44   8.4    2
(AM472363) Vitis vinifera, whole genome shotgun sequence, co...    44   8.6    3
(BS000224) Pan troglodytes chromosome 22 clone:PTB-030G10, m...    44   8.9    1
(AC183110) Pan troglodytes BAC clone CH251-353M12 from chrom...    44   8.9    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.9    1
(AC106887) Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom...    44   8.9    1
(U44759) Caenorhabditis elegans troponin T mRNA, complete cds.     44   8.9    1
(U43282) Caenorhabditis elegans cosmid T22E5, complete seque...    44   8.9    1
(DQ112134) Homo sapiens endogenous virus Human endogenous re...    44   8.9    1
(DQ112132) Homo sapiens endogenous virus Human endogenous re...    44   8.9    1
(DQ112123) Homo sapiens endogenous virus Human endogenous re...    44   8.9    1
(DQ112118) Homo sapiens endogenous virus Human endogenous re...    44   8.9    1
(AL163246) Homo sapiens chromosome 21 segment HS21C046.            44   8.9    1
(AL035610) Homo sapiens chromosome 21 PAC LLNLP704M17648Q13.       44   8.9    1
(AC215707) Homo sapiens FOSMID clone ABC11-48325300M17 from ...    44   8.9    1
(AC130379) Homo sapiens chromosome 17, clone RP13-383M5, com...    44   8.9    1
(AC130352) Homo sapiens chromosome 8, clone RP11-419I17, com...    44   8.9    1
(AC116562) Homo sapiens BAC clone RP11-489M13 from 4, comple...    44   8.9    1
(AC109324) Homo sapiens chromosome 8, clone CTD1-2308H5, com...    44   8.9    1
(AC105214) Homo sapiens chromosome 8, clone RP11-354G4, comp...    44   8.9    1
(AC092766) Homo sapiens chromosome 8, clone RP11-483N3, comp...    44   8.9    1
(AC087342) Homo sapiens chromosome 8, clone RP11-540E4, comp...    44   8.9    1
(AC079337) Homo sapiens BAC clone CTD-2171G21 from 2, comple...    44   8.9    1
(AC078961) Homo sapiens 4 BAC RP11-486H4 (Roswell Park Cance...    44   8.9    1
(AC068020) Homo sapiens chromosome 8, clone RP11-556O5, comp...    44   8.9    1
(AC156211) Bos taurus clone CH240-43G12, WORKING DRAFT SEQUE...    44   8.9    1
(AC146908) Oryza sativa Japonica Group chromosome 11 clone O...    44   8.9    1
(AC139169) Oryza sativa Japonica Group chromosome 3 clone OS...    44   8.9    1
(AC138201) Homo sapiens chromosome 8 clone RP11-98O19 map 8,...    44   8.9    1
(AC133643) Homo sapiens chromosome 8 clone CTC-776F21 map 8,...    44   8.9    1
(AC131279) Homo sapiens chromosome 8 clone RP11-449I16 map 8...    44   8.9    1
(AC109323) Homo sapiens chromosome 8 clone CTD-2005A12 map 8...    44   8.9    1
(AC105244) Homo sapiens chromosome 18 clone CTD-2387G16 map ...    44   8.9    1
(AC099809) Homo sapiens chromosome 8 clone RP11-535F5 map 8,...    44   8.9    1
(AC069290) Homo sapiens chromosome 8 clone RP11-540E4, WORKI...    44   8.9    1
(AC068974) Homo sapiens chromosome 8 clone RP11-351I21, WORK...    44   8.9    1
(CU024909) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(AF284563) Homo sapiens chromosome 8 clone CTC-776F21 map 8p...    44   8.9    1
(AC231774) Homo sapiens chromosome UNKNOWN clone ABC11-48001...    44   8.9    1
(AC230490) Bos taurus clone CH240-506O21, WORKING DRAFT SEQU...    44   8.9    1
(AC224885) Bos taurus clone CH240-473L9, WORKING DRAFT SEQUE...    44   8.9    1
(AC222174) Bos taurus clone CH240-411F24, WORKING DRAFT SEQU...    44   8.9    1
(AC214672) Oryza glaberrima clone OG_BBa0025O11, *** SEQUENC...    44   8.9    1
(AC189766) Zea mays chromosome 8 clone CH201-447I13; ZMMBBc0...    44   8.9    1
(AC175502) Bos taurus clone CH240-259N9, WORKING DRAFT SEQUE...    44   8.9    1
(AC172694) Bos taurus clone CH240-199A23, WORKING DRAFT SEQU...    44   8.9    1
(AC009617) Homo sapiens chromosome 4 clone RP11-64C20 map 4,...    44   8.9    1
(AQ052670) RPCI11-50D20.TJ RPCI-11 Homo sapiens genomic clon...    44   8.9    1
(EJ496351) 1095403576643 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.9    1
(ED445815) AUAC-aan68c09.b1 Ascaris suum whole genome shotgu...    44   8.9    1
(ED158593) AUAC-aaj14g01.b1 Ascaris suum whole genome shotgu...    44   8.9    1
(CG107048) PUIDC81TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   8.9    1
(CC683430) OG2AA77TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    44   8.9    1
(AG168839) Pan troglodytes DNA, clone: RP43-037F08.T7.             44   8.9    1
(EL776029) PUNAH28TV Pythium ultimum ESTs Pythium ultimum DA...    44   8.9    1
(EC018702) 3867011 KZ41 Caenorhabditis elegans cDNA clone 14...    44   8.9    1
(EC017601) 6644006 KZ41 Caenorhabditis elegans cDNA clone 17...    44   8.9    1
(AU216516) Caenorhabditis elegans cDNA clone:yk838g12 : 3' e...    44   8.9    1
(AU216479) Caenorhabditis elegans cDNA clone:yk838d08 : 3' e...    44   8.9    1
(AU214172) Caenorhabditis elegans cDNA clone:yk810b04 : 3' e...    44   8.9    1
(D73336) Caenorhabditis elegans cDNA clone yk117e5 : 3' end,...    44   8.9    1
(D73092) Caenorhabditis elegans cDNA clone yk113h7 : 3' end,...    44   8.9    1
(D71455) Caenorhabditis elegans cDNA clone yk75e8 : 3' end, ...    44   8.9    1

>(BJ354928) Dictyostelium discoideum cDNA clone:dda55n05, 3' end,
           single read.
          Length = 653

 Score = 1181 bits (596), Expect(2) = 0.0
 Identities = 609/615 (99%)
 Strand = Plus / Minus


Query: 174 cgatcaaaaagtaccatttgtatttgcaaacgctcaagaagcaaaggttaaaaagtctgc 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cgatcaaaaagtaccatttgtatttgcaaacgctcaagaagcaaaggttaaaaagtctgc 594


Query: 234 tagagaaattcaagtgattaaagagtttcgtcaattattaaaagaccatgaaaatgataa 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tagagaaattcaagtgattaaagagtttcgtcaattattaaaagaccatgaaaatgataa 534


Query: 294 actcattagacataaagagtatggtggctactcaaaggggtttccagagaatccaagaat 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 actcattagacataaagagtatggtggctactcaaaggggtttccagagaatccaagaat 474


Query: 354 cacaatgaaggattataaacttgttgctcagtcttcatttgatcaaggtggtacaaaccc 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cacaatgaaggattataaacttgttgctcagtcttcatttgatcaaggtggtacaaaccc 414


Query: 414 attggctgatcataatgccagacattagaactgtctttgaaaaatgttttttccaagtac 473
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 attgggtgatcataatgccagacattagaactgtctttgaaaaatgttttttccaagtac 354


Query: 474 actcgccgctcaaccgttggtcagaggtgatgatatcgaattactcttatgggacgtcca 533
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 353 actcgccgctcaaccgttggtcagaggtgatgatatcgaantactcttatgggacgtcca 294


Query: 534 aggtttcccatgtagattcgctgtcgaaggtggtcaatgtatcgatccttcaagcttgaa 593
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 aggtttcccatgtanattcgctgtngaaggtggtcaatgtatcgatccttcaagcttgaa 234


Query: 594 agttggtggtaaatactcgtttattgccttttcaacatgtcgttctaaatttgataatca 653
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 233 agttggtggtaaatactcgtttattgccttttcaacatgtcgttntaaatttgataatca 174


Query: 654 aaaaattcacgattgtgattggatcattcaaggccccacaactccatcgctatgcgcaaa 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aaaaattcacgattgtgattggatcattcaaggccccacaactccatcgctatgcgcaaa 114


Query: 714 ttgtggtaaaatttgcacttcaaaatgtacaacaaactattgtgatcgtgattgtcaaac 773
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttgtggtaaaatttgcncttcaaaatgtacaacaaactattgtgatcgtgattgtcaaac 54


Query: 774 tgttgattggcaaag 788
           |||||||||||||||
Sbjct: 53  tgttgattggcaaag 39

 Score = 46.1 bits (23), Expect(2) = 0.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus


Query: 792 atcataaattaatttgtggtttaaaatcttttaaag 827
           ||||||| |||||||| ||||  |||||||||||||
Sbjct: 36  atcataanttaatttgaggttnnaaatcttttaaag 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 805,870,680
Number of extensions: 45373526
Number of successful extensions: 3422936
Number of sequences better than 10.0: 127
Length of query: 892
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 868
Effective length of database: 97,308,875,965
Effective search space: 84464104337620
Effective search space used: 84464104337620
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11892-1 (Contig-U11892-1Q) /CSM_Contig/Contig-U11892-1Q.Seq.d
         (892 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK221682_1(AK221682|pid:none) Arabidopsis thaliana mRNA for puta...    36   1.5
(Q9SJA1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;...    36   1.5
AF068894_1(AF068894|pid:none) Homo sapiens rectosigmoid colon pr...    35   2.6
AF068897_1(AF068897|pid:none) Homo sapiens normal colorectal epi...    35   2.6
(O75513) RecName: Full=Deformed epidermal autoregulatory factor ...    35   2.6
AC116330_2(AC116330|pid:none) Dictyostelium discoideum chromosom...    35   4.4
T23682(T23682) hypothetical protein M02G9.3 - Caenorhabditis ele...    34   5.8
CP001503_219(CP001503|pid:none) Burkholderia glumae BGR1 chromos...    34   7.5
CP000620_48(CP000620|pid:none) Burkholderia vietnamiensis G4 pla...    33   9.9
(Q67XW5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 18;...    33   9.9
CU633873_66(CU633873|pid:none) Podospora anserina genomic DNA ch...    33   9.9

>AK221682_1(AK221682|pid:none) Arabidopsis thaliana mRNA for
           putative ubiquitin carboxyl terminal hydrolase, complete
           cds, clone: RAFL14-53-A17.
           &AK318726_1(AK318726|pid:none)
          Length = 418

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 706 CANCGKICTSKCT----TNYCDRDCQTVDWQS 789
           C+ CGK  T KC+      YC   CQT DW+S
Sbjct: 64  CSVCGKATTKKCSRCKSVRYCSAACQTSDWKS 95

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,315,105,019
Number of extensions: 28159483
Number of successful extensions: 60564
Number of sequences better than 10.0: 11
Number of HSP's gapped: 60530
Number of HSP's successfully gapped: 11
Length of query: 297
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 169
Effective length of database: 636,901,312
Effective search space: 107636321728
Effective search space used: 107636321728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.02  gvh: 0.54  alm: 0.17  top: 0.43  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoplasmic
	 12.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U11892-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 9
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 11
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0