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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11883-1
Contig ID Contig-U11883-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11883-1 (Contig-U11883-1Q) /CSM_Contig/Contig-U11883-1Q.Seq.d
TACAAAATTTATATATATATATAATATTTTTAAATAATTATATTTTTTTT
TTAAAATTNAAAATTAAAAAATTAAAAAGGGATTCCATGTTAAATNCAAA
AGTTTTTTATGGTTTAAANNNNNNNNN----------NNNNNNNNNNTNA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATATCCAAGGAAGTATATCAACATTACAATATGAAGAAATTAAAAAG
ATATTTTATAAATTATATAAAGAAATGAATGAAGAGAAAGAGGAACAAAA
AGTTGTTAAAATATTTTCAGTTAAAAAGAGTCAACACCTTTGTAATTTAA
CAGTATNTTCAAAACAAACATTATCTTATTTAGCACAGTTTTTAATACCA
CAAATGTTTCCACAATTGGGTAGAGGTCAACATTTTGAATTATATTGGAT
AGATAAAAGAAATGAATATTGTCAAGTATTTTACAAAGATTTGGACCAAC
TCATATTCTCATTTATTTGTAATTTAGATGTATTTGGTATTCAAACATTA
ACCGAACAACAAGCCTCTACAAAATTATTAACTTTTGTCATTTCAAAATC
AGGTGAAAA
Gap gap included
Contig length 599
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1457179
End point 1457762
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U11883
List of clone(s) 

est1=CHO161F,1,118
est2=CHO161Z,119,581
Translated Amino Acid sequence 
QNLYIYIIFLNNYIFFLKXKIKKLKRDSMLNXKVFYGLXXX---

---XXXXNNNNNNNNNNNNNNNNNNIQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVK
IFSVKKSQHLCNLTVXSKQTLSYLAQFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKD
LDQLIFSFICNLDVFGIQTLTEQQASTKLLTFVISKSGE
Translated Amino Acid sequence (All Frames) 
Frame A:
ykiyiyi*yf*iiifff*nxklkn*kgipc*xqkffmv*xxx---

---xxxxiiiiiiiiiiiiiiiiiiiskevyqhynmkklkryfinyikk*mkrkrnkkll
kyfqlkrvntfvi*qyxqnkhyli*hsf*yhkcfhnwvevnilnyig*ikemnivkyftk
iwtnsyshlfvi*mylvfkh*pnnkplqny*llsfqnqvk

Frame B:
tkfiyiynifk*lyfffkixn*kikkgfhvkxksflwfkxxx---

---xxxx******************yprkyiniti*rn*kdil*ii*rne*rergtksc*
nifs*kestpl*fnsxfktniilfstvfnttnvstig*rstf*iildr*kk*ilssilqr
fgpthiliyl*frciwysninrttslykiinfchfkir*k

Frame C:
QNLYIYIIFLNNYIFFLKXKIKKLKRDSMLNXKVFYGLXXX---

---XXXXNNNNNNNNNNNNNNNNNNIQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVK
IFSVKKSQHLCNLTVXSKQTLSYLAQFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKD
LDQLIFSFICNLDVFGIQTLTEQQASTKLLTFVISKSGE
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11883-1 (Contig-U11883-1Q)
/CSM_Contig/Contig-U11883-1Q.Seq.d
         (609 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11883-1 (Contig-U11883-1Q) /CSM_Contig/Conti...   793  0.0
Contig-U14404-1 (Contig-U14404-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U10797-1 (Contig-U10797-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09278-1 (Contig-U09278-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14438-1 (Contig-U14438-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U14025-1 (Contig-U14025-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13080-1 (Contig-U13080-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12200-1 (Contig-U12200-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U14343-1 (Contig-U14343-1Q) /CSM_Contig/Conti...    36  0.043

>Contig-U11883-1 (Contig-U11883-1Q) /CSM_Contig/Contig-U11883-1Q.Seq.d
          Length = 609

 Score =  793 bits (400), Expect = 0.0
 Identities = 403/403 (100%)
 Strand = Plus / Plus

                                                                       
Query: 207 tccaaggaagtatatcaacattacaatatgaagaaattaaaaagatattttataaattat 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tccaaggaagtatatcaacattacaatatgaagaaattaaaaagatattttataaattat 266

                                                                       
Query: 267 ataaagaaatgaatgaagagaaagaggaacaaaaagttgttaaaatattttcagttaaaa 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ataaagaaatgaatgaagagaaagaggaacaaaaagttgttaaaatattttcagttaaaa 326

                                                                       
Query: 327 agagtcaacacctttgtaatttaacagtatnttcaaaacaaacattatcttatttagcac 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agagtcaacacctttgtaatttaacagtatnttcaaaacaaacattatcttatttagcac 386

                                                                       
Query: 387 agtttttaataccacaaatgtttccacaattgggtagaggtcaacattttgaattatatt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtttttaataccacaaatgtttccacaattgggtagaggtcaacattttgaattatatt 446

                                                                       
Query: 447 ggatagataaaagaaatgaatattgtcaagtattttacaaagatttggaccaactcatat 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggatagataaaagaaatgaatattgtcaagtattttacaaagatttggaccaactcatat 506

                                                                       
Query: 507 tctcatttatttgtaatttagatgtatttggtattcaaacattaaccgaacaacaagcct 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tctcatttatttgtaatttagatgtatttggtattcaaacattaaccgaacaacaagcct 566

                                                      
Query: 567 ctacaaaattattaacttttgtcatttcaaaatcaggtgaaaa 609
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctacaaaattattaacttttgtcatttcaaaatcaggtgaaaa 609


 Score = 83.8 bits (42), Expect = 2e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                    
Query: 1  tacaaaatttatatatatatataatatttttaaataattata 42
          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tacaaaatttatatatatatataatatttttaaataattata 42


 Score = 73.8 bits (37), Expect = 2e-13
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 79  gggattccatgttaaatncaaaagttttttatggtttaaa 118
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gggattccatgttaaatncaaaagttttttatggtttaaa 118


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                          
Query: 9  ttatatatatatataa 24
          ||||||||||||||||
Sbjct: 24 ttatatatatatataa 9


>Contig-U14404-1 (Contig-U14404-1Q) /CSM_Contig/Contig-U14404-1Q.Seq.d
          Length = 276

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 5  aaatttatatatatatataata 26
          ||||||||||||||||||||||
Sbjct: 48 aaatttatatatatatataata 27


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 9  ttatatatatatataa 24
          ||||||||||||||||
Sbjct: 29 ttatatatatatataa 44


>Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Contig-U11054-1Q.Seq.d
          Length = 2106

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 7  atttatatatatatataatat 27
          |||||||||||||||||||||
Sbjct: 75 atttatatatatatataatat 95


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                          
Query: 9  ttatatatatatataa 24
          ||||||||||||||||
Sbjct: 92 ttatatatatatataa 77


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,406
Number of Sequences: 6905
Number of extensions: 13406
Number of successful extensions: 2602
Number of sequences better than 10.0: 347
length of query: 609
length of database: 5,674,871
effective HSP length: 16
effective length of query: 593
effective length of database: 5,564,391
effective search space: 3299683863
effective search space used: 3299683863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11883-1 (Contig-U11883-1Q) /CSM_Contig/Contig-U11883-1Q.Seq.d
         (609 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...   773   0.0    2
(BJ384755) Dictyostelium discoideum cDNA clone:ddc50i15, 3' ...   793   0.0    1
(BJ369447) Dictyostelium discoideum cDNA clone:ddc50i15, 5' ...    74   6e-09  1
(AC223931) Bos taurus clone CH240-454F19, WORKING DRAFT SEQU...    38   0.001  7
(AC226718) Zea mays chromosome 2 clone CH201-27P4; ZMMBBc002...    54   0.006  1
(AC211063) Solanum lycopersicum chromosome 6 clone C06HBa021...    38   0.025  6
(CE835633) tigr-gss-dog-17000332409375 Dog Library Canis lup...    48   0.043  2
(AC164731) Bos taurus clone CH240-153J7, *** SEQUENCING IN P...    40   0.057  2
(BX322555) Zebrafish DNA sequence from clone DKEY-19D21 in l...    38   0.057  2
(AC165925) Bos taurus clone CH240-174O24, WORKING DRAFT SEQU...    40   0.057  2
(FH612679) CHO_OF4937xj11f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.094  1
(EG551200) MM04K08_RP Sugar Beet germination cDNA library Be...    50   0.094  1
(CP000416) Lactobacillus brevis ATCC 367, complete genome.         50   0.094  1
(AL356278) Human DNA sequence from clone RP11-515J24 on chro...    40   0.096  8
(BX908398) Zebrafish DNA sequence from clone CH211-231A1 in ...    38   0.12   5
(AL844507) Plasmodium falciparum chromosome 8.                     38   0.12   14
(EY305187) CAWX19229.fwd CAWX Helobdella robusta Primary Ear...    40   0.20   2
(CV749436) sjl1-008_B08_sjl1-008B08-T7_061.ab1 SJL Schistoso...    34   0.20   3
(AC180002) Strongylocentrotus purpuratus clone R3-16O18, WOR...    34   0.21   2
(AC184614) Strongylocentrotus purpuratus clone R3-3093J13, W...    34   0.21   2
(AF067215) Caenorhabditis elegans cosmid ZK380, complete seq...    38   0.22   4
(AL359714) Human DNA sequence from clone RP11-22A15 on chrom...    34   0.29   5
(AZ678145) ENTIT24TF Entamoeba histolytica Sheared DNA Entam...    32   0.32   3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    46   0.34   8
(AC113464) Mus musculus chromosome 8, clone RP23-183P1, comp...    48   0.37   1
(AC127856) Rattus norvegicus clone CH230-255D13, WORKING DRA...    48   0.37   1
(AC096606) Rattus norvegicus clone CH230-64H5, WORKING DRAFT...    48   0.37   1
(ER631502) 1093018453986 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.37   1
(CC066328) CSU-K33r.24B9.SP6 CSU-K33r Aedes aegypti genomic ...    48   0.37   1
(DB768579) Apis mellifera head cDNA, RIKEN full-length enric...    48   0.37   1
(DB767124) Apis mellifera head cDNA, RIKEN full-length enric...    48   0.37   1
(AC121357) Mus musculus chromosome 15, clone RP23-56D7, comp...    36   0.44   5
(AX346873) Sequence 1944 from Patent WO0200928.                    46   0.46   2
(AL138711) Human DNA sequence from clone RP11-495J3 on chrom...    36   0.62   4
(EK170718) 1095458073103 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.66   2
(AC199459) Macaca mulatta clone CH250-133E1, WORKING DRAFT S...    46   0.70   4
(AC126876) Rattus norvegicus clone CH230-124O17, *** SEQUENC...    32   0.76   2
(AC098218) Rattus norvegicus clone CH230-121L18, *** SEQUENC...    32   0.77   2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    38   0.77   10
(CR938727) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.86   5
(AZ536333) ENTCD69TF Entamoeba histolytica Sheared DNA Entam...    32   0.92   3
(AZ535087) ENTBO37TF Entamoeba histolytica Sheared DNA Entam...    34   0.95   3
(AZ530620) ENTBN28TF Entamoeba histolytica Sheared DNA Entam...    34   0.95   3
(AZ536347) ENTBN59TR Entamoeba histolytica Sheared DNA Entam...    34   0.97   3
(AZ534398) ENTCE60TF Entamoeba histolytica Sheared DNA Entam...    32   1.0    2
(EJ838335) 1093017814986 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.0    2
(AZ672825) ENTKD45TF Entamoeba histolytica Sheared DNA Entam...    32   1.0    2
(AM684969) Entamoeba terrapinae GSS, clone terra018e11.q1k.        32   1.0    2
(EJ926263) 1093018782885 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.0    2
(EX632699) 256583161 Pea aphid whole body normalized full le...    34   1.0    2
(AZ681386) ENTIG92TR Entamoeba histolytica Sheared DNA Entam...    34   1.1    3
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       36   1.2    12
(AC140246) Mus musculus chromosome UNK clone RP23-295K16, WO...    34   1.3    7
(AL356799) Human chromosome 14 DNA sequence BAC R-63P7 of li...    44   1.3    3
(Z68270) Caenorhabditis elegans Cosmid ZC410.                      46   1.5    1
(AY268350) Homo sapiens mutS homolog 4 (E. coli) (MSH4) gene...    46   1.5    1
(AL445464) Human DNA sequence from clone RP11-262K24 on chro...    46   1.5    1
(AC148499) Callithrix jacchus clone CH259-273L3, WORKING DRA...    46   1.5    1
(AC148257) Callithrix jacchus clone CH259-174L21, WORKING DR...    46   1.5    1
(AC112757) Rattus norvegicus clone CH230-306I13, WORKING DRA...    46   1.5    1
(AC095010) Rattus norvegicus clone CH230-6L7, *** SEQUENCING...    46   1.5    1
(CR940352) Theileria annulata genomic DNA chromosome 3.            46   1.5    1
(AY881150) Solanum lycopersicum chromosome 8 clone BAC LE_HB...    46   1.5    1
(AC025147) Homo sapiens chromosome 1 clone RP11-262I24 map 1...    46   1.5    1
(AC009337) Homo sapiens clone RPCI11-189G2, WORKING DRAFT SE...    46   1.5    1
(FI068769) CHO_OF7311xo21f1.ab1 CHO_OF7 Nicotiana tabacum ge...    46   1.5    1
(ER409384) 1095368008604 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.5    1
(CW498978) fsbb001f293i04k0 Sorghum methylation filtered lib...    46   1.5    1
(AC182193) Bos taurus clone CH240-511J20, WORKING DRAFT SEQU...    40   1.5    3
(AC084808) Homo sapiens chromosome 11 clone RP11-268A7 map 1...    36   1.8    5
(AC215514) Nomascus leucogenys chromosome UNK clone CH271-97...    40   2.1    4
(AC128931) Rattus norvegicus clone CH230-369A6, WORKING DRAF...    36   2.5    6
(AX345357) Sequence 428 from Patent WO0200928.                     38   2.6    3
(AC116091) Rattus norvegicus clone CH230-377N11, *** SEQUENC...    36   2.6    7
(AC146464) Saimiri boliviensis boliviensis clone CH254-84A11...    34   2.8    2
(AC084320) Oryza sativa chromosome 3 BAC OSJNBa0091J19 genom...    34   2.8    2
(AC170236) Bos taurus clone CH240-216B8, WORKING DRAFT SEQUE...    32   2.9    2
(AC084748) Oryza sativa chromosome 3 BAC OSJNBa0010I09 genom...    34   2.9    2
(AC145458) Cicer arietinum strain FLIP84-92C clone gl1-4n10,...    40   2.9    3
(CT030165) M.truncatula DNA sequence from clone MTH2-150K22 ...    32   2.9    2
(AC130910) Rattus norvegicus clone CH230-77K1, *** SEQUENCIN...    44   3.0    4
(AZ542371) ENTES88TR Entamoeba histolytica Sheared DNA Entam...    32   3.0    3
(AC208932) Populus trichocarpa clone JGIACSB1081-D10, comple...    32   3.1    2
(AC208087) Populus trichocarpa clone JGIACSB05-D20, complete...    32   3.1    2
(EJ566032) 1092959713996 Global-Ocean-Sampling_GS-29-01-01-1...    36   3.2    2
(AZ527864) ENTCN43TF Entamoeba histolytica Sheared DNA Entam...    32   3.3    3
(EA681687) Sequence 60566 from patent US 7365185.                  34   3.4    2
(AL845296) Mouse DNA sequence from clone RP23-121B24 on chro...    34   3.6    6
(AC105263) Drosophila melanogaster 3L BAC RP98-48G3 (Roswell...    38   3.6    7
(AP002979) Homo sapiens genomic DNA, chromosome 8q23, clone:...    36   3.7    7
(AL844509) Plasmodium falciparum chromosome 13.                    36   3.7    11
(EA643604) Sequence 22483 from patent US 7365185.                  34   3.7    2
(AZ690967) ENTJB78TF Entamoeba histolytica Sheared DNA Entam...    34   3.8    2
(BH139134) ENTOX90TR Entamoeba histolytica Sheared DNA Entam...    34   3.8    2
(BH163952) ENTTC38TR Entamoeba histolytica Sheared DNA Entam...    34   3.8    2
(BH164064) ENTTC05TF Entamoeba histolytica Sheared DNA Entam...    32   3.8    2
(AZ538195) ENTGK30TR Entamoeba histolytica Sheared DNA Entam...    32   3.8    2
(AZ548869) ENTGP64TF Entamoeba histolytica Sheared DNA Entam...    34   3.8    2
(BH146442) ENTPS39TR Entamoeba histolytica Sheared DNA Entam...    34   3.8    2
(BH156935) ENTRX25TF Entamoeba histolytica Sheared DNA Entam...    34   3.8    2

>(AC116921) Dictyostelium discoideum chromosome 2 map 4624505-4657775
            strain AX4, complete sequence.
          Length = 33270

 Score =  773 bits (390), Expect(2) = 0.0
 Identities = 398/401 (99%)
 Strand = Plus / Plus


Query: 209  caaggaagtatatcaacattacaatatgaagaaattaaaaagatattttataaattatat 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7833 caaggaagtatatcaacattacaatatgaagaaattaaaaagatattttataaattatat 7892


Query: 269  aaagaaatgaatgaagagaaagaggaacaaaaagttgttaaaatattttcagttaaaaag 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7893 aaagaaatgaatgaagagaaagaggaacaaaaagttgttaaaatattttcagttaaaaag 7952


Query: 329  agtcaacacctttgtaatttaacagtatnttcaaaacaaacattatcttatttagcacag 388
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7953 agtcaacacctttgtaatttaacagtatcttcaaaacaaacattatcttatttagcacag 8012


Query: 389  tttttaataccacaaatgtttccacaattgggtagaggtcaacattttgaattatattgg 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8013 tttttaataccacaaatgtttccacaattgggtagaggtcaacattttgaattatattgg 8072


Query: 449  atagataaaagaaatgaatattgtcaagtattttacaaagatttggaccaactcatattc 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8073 atagataaaagaaatgaatattgtcaagtattttacaaagatttggaccaactcatattc 8132


Query: 509  tcatttatttgtaatttagatgtatttggtattcaaacattaaccgaacaacaagcctct 568
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 8133 tcatttatttgtaatttagatgtatttggtattcaaacattaactgaacaacaagcctct 8192


Query: 569  acaaaattattaacttttgtcatttcaaaatcaggtgaaaa 609
            |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8193 acaaaattattaacttttgtcatttcaaaatctggtgaaaa 8233

 Score = 71.9 bits (36), Expect(2) = 0.0
 Identities = 38/39 (97%)
 Strand = Plus / Plus


Query: 80   ggattccatgttaaatncaaaagttttttatggtttaaa 118
            |||||||||||||||| ||||||||||||||||||||||
Sbjct: 6074 ggattccatgttaaattcaaaagttttttatggtttaaa 6112

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 688,840,285
Number of extensions: 47282388
Number of successful extensions: 4398242
Number of sequences better than 10.0: 208
Length of query: 609
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 586
Effective length of database: 93,106,754,628
Effective search space: 54560558212008
Effective search space used: 54560558212008
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11883-1 (Contig-U11883-1Q) /CSM_Contig/Contig-U11883-1Q.Seq.d
         (609 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_4(AC116921|pid:none) Dictyostelium discoideum chromosom...   268   1e-70
FJ483517_4(FJ483517|pid:none) Bunostomum phlebotomum mitochondri...    33   8.2

>AC116921_4(AC116921|pid:none) Dictyostelium discoideum chromosome 2
           map 4624505-4657775 strain AX4, complete sequence.
          Length = 734

 Score =  268 bits (684), Expect = 1e-70
 Identities = 133/134 (99%), Positives = 133/134 (99%)
 Frame = +2

Query: 206 IQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVKIFSVKKSQHLCNLTVXSKQTLSYLA 385
           IQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVKIFSVKKSQHLCNLTV SKQTLSYLA
Sbjct: 587 IQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVKIFSVKKSQHLCNLTVSSKQTLSYLA 646

Query: 386 QFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKDLDQLIFSFICNLDVFGIQTLTEQQA 565
           QFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKDLDQLIFSFICNLDVFGIQTLTEQQA
Sbjct: 647 QFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKDLDQLIFSFICNLDVFGIQTLTEQQA 706

Query: 566 STKLLTFVISKSGE 607
           STKLLTFVISKSGE
Sbjct: 707 STKLLTFVISKSGE 720

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 662,561,019
Number of extensions: 13888970
Number of successful extensions: 27777
Number of sequences better than 10.0: 2
Number of HSP's gapped: 27757
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 81
Effective length of database: 656,320,666
Effective search space: 53161973946
Effective search space used: 53161973946
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.93  gvh: 0.40  alm: 0.35  top: 0.80  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U11883-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0