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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11872-1
Contig ID Contig-U11872-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Contig-U11872-1Q.Seq.d
GTAAATATAAATATAAATTGGATTTATTTAAAACAATTTTTTAATTTTCA
AAAATAGTAAACAATGAAAGGTAAAAGTGTTGTAATTGCAATTGATTTTG
GTACTTCATGTTCTGGGTTTGCATTTGTTTTCCCCCAAGATATTTCAGAG
ACAGTTTATTGCACTGAAACTTGGGGTGGGTCATGTTCAATAAATGTAAA
AACTTTGACGCAAATTGTGTTGGATGAAAAAAAAAAATTTGTTGCATTTG
GTTACNAGGCTANANATTACTTTTCAAACAATGATGATGAAGGTNCTGAA
AAACATTCNCTTTACTCCTCTTATAAAATGCATCTATTTAACCCAAAAAC
TAGAGGCCAACCAATTAAATCAGTTTGNGGTAATCATAGTGCAACAATTC
AANAACTCATTACTGAATCCTTAANATATTTAAAAATTGTTGCAATGAAT
AAGGTAAATAGTATATCTTCCAAAAAAGTTTATGAATCCGAAGTTCAATG
GGTATTAACAATCCCTGCAATTTGGGATGACTCTAGTAAACAAGTAATGA
----------TGTGCATTACATGTAAAATCGGGAAAGGAAATTAGACATT
CTTACGACTTTGCACTCGATGAAGCAGAATCATTAAGAAGAAATAGATTA
CGTCAAGAAAAGAATAAACCCCCAGTGGTACAACTTTGCCTCATGATGGA
TTGCACTGGTAGTATGGGCTCATGGATTAAAGAAAGTAAAGAAAAAATTA
TTTCATTAACTGGATTATTAGCCAGCTCATATGTAGGTTTGGAATTGAAT
GCAAGTTTCATAGGTTATCGTGATATTACTGATTCCAATAGATTTGAGGT
TGTACCATTTACAACGGATATGGGATATCTTGCTTCCAAAATTAATGAAG
CAGTTCCAACAGGTGGTGGTGATACTCCAGAAGATATTACAGGTGCTTTT
TTACAAGTAAATAACCTATCGTGGAAACCAACTCATACTAAACTTGTTGT
CCATGTAGGCGATGCACCATGCCACGGCAAAAAATATCATAATTGTGTTG
ATTCATATCCAGATGGTGACCCAAGTGGTTTGGTTCCAGAAAAACTTTTA
CAAAAATTATCTTCAAAATCAATTGACTATTATTTCATTAAAATCACATC
TCAAACTGATAAGATGATTGAAATTTTTAGAAAGTCATATGACTCACCTC
AAAAAAAGATTGTAGTTCATGACCTTGGATCAGATGTCTCAAAATTATTA
CCTTCTTTAGTTAACTTTGTTCAAACCTCTATTACCAGATTTACAAATTA
AAAAATAATAANATCCCTTAAAAANAAATAAAAT
Gap gap included
Contig length 1324
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1901957
End point 1900628
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U11872
List of clone(s) 

est1=CHN535F,1,258
est2=VHM352F,9,550
est3=CHN535Z,551,1314
est4=VHM352Z,576,1326
Translated Amino Acid sequence 
vnininwiylkqffnfqk**TMKGKSVVIAIDFGTSCSGFAFVFPQDISETVYCTETWGG
SCSINVKTLTQIVLDEKKKFVAFGYXAXXYFSNNDDEGXEKHSLYSSYKMHLFNPKTRGQ
PIKSVXGNHSATIQXLITESLXYLKIVAMNKVNSISSKKVYESEVQWVLTIPAIWDDSSK
QVM---

---CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIK
ESKEKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPT
GGGDTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPE
KLLQKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFV
QTSITRFTN*kiixslkxk*n
Translated Amino Acid sequence (All Frames) 
Frame A:
vnininwiylkqffnfqk**TMKGKSVVIAIDFGTSCSGFAFVFPQDISETVYCTETWGG
SCSINVKTLTQIVLDEKKKFVAFGYXAXXYFSNNDDEGXEKHSLYSSYKMHLFNPKTRGQ
PIKSVXGNHSATIQXLITESLXYLKIVAMNKVNSISSKKVYESEVQWVLTIPAIWDDSSK
QVM---

---CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIK
ESKEKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPT
GGGDTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPE
KLLQKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFV
QTSITRFTN*kiixslkxk*n

Frame B:
*i*i*igfi*nnflifknskq*kvkvl*lqlilvlhvlglhlfspkifqrqfialklgvg
hvq*m*kl*rklcwmkkknllhlvtrlxitfqtmmmkvlknixftplikciyltqklean
qlnqfxviivqqfxnsllnp*xi*kllq*ir*ivylpkkfmnpkfngy*qslqfgmtlvn
k**---

---vhym*nrerkldilttlhsmkqnh*eeidyvkkrinpqwynfas*wialvvwahglk
kvkkklfh*ldy*pahm*vwn*mqvs*vivillipidlrlyhlqriwdillpklmkqfqq
vvvilqkilqvlfyk*ityrgnqlilnllsm*amhhatakniiivlihiqmvtqvvwfqk
nfyknylqnqltiislkshlklir*lkfleshmthlkkrl*fmtldqmsqnyyll*ltlf
kpllpdlqikk**xplkxnk

Frame C:
kykykldlfktif*fskivnner*kccncn*fwyfmfwvcicfppryfrdsllh*nlgwv
mfnkcknfdancvg*kkkicciwlxgxxllfkq***rx*ktfxllll*nasi*pkn*rpt
n*islx*s*cnnsxthy*ilxifknccne*gk*yifqksl*irssmginnpcnlg*l**t
sn---

---citckigkgn*tflrlctr*sriikkk*itsrke*tpsgttlphdglhw*yglmd*r
k*rknyfinwiisqlicrfgieckfhrls*yy*fq*i*gctiyngygiscfqn**sssnr
ww*ysrryyrcfftsk*pivetnsy*tccpcrrctmprqkis*lc*fisrw*pkwfgsrk
tftkiifkin*llfh*nhisn**dd*nf*kvi*ltskkdcss*pwirclkiitffs*lcs
nlyyqiyklknnxip*kxik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11872-1 (Contig-U11872-1Q)
/CSM_Contig/Contig-U11872-1Q.Seq.d
         (1334 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Conti...  2228  0.0
Contig-U06351-1 (Contig-U06351-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U04157-1 (Contig-U04157-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13973-1 (Contig-U13973-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U10372-1 (Contig-U10372-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U09446-1 (Contig-U09446-1Q) /CSM_Contig/Conti...    34  0.37

>Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Contig-U11872-1Q.Seq.d
          Length = 1334

 Score = 2228 bits (1124), Expect = 0.0
 Identities = 1214/1232 (98%)
 Strand = Plus / Plus

                                                                        
Query: 62   caatgaaaggtaaaagtgttgtaattgcaattgattttggtacttcatgttctgggtttg 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62   caatgaaaggtaaaagtgttgtaattgcaattgattttggtacttcatgttctgggtttg 121

                                                                        
Query: 122  catttgttttcccccaagatatttcagagacagtttattgcactgaaacttggggtgggt 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  catttgttttcccccaagatatttcagagacagtttattgcactgaaacttggggtgggt 181

                                                                        
Query: 182  catgttcaataaatgtaaaaactttgacgcaaattgtgttggatgnnnnnnnnnnntttg 241
            |||||||||||||||||||||||||||||||||||||||||||||           ||||
Sbjct: 182  catgttcaataaatgtaaaaactttgacgcaaattgtgttggatgaaaaaaaaaaatttg 241

                                                                        
Query: 242  ttgcatttggttacnaggctananattacttttcaaacaatgatgatgaaggtnctgaaa 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  ttgcatttggttacnaggctananattacttttcaaacaatgatgatgaaggtnctgaaa 301

                                                                        
Query: 302  aacattcnctttactcctcttataaaatgcatctatttaacccaaaaactagaggccaac 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  aacattcnctttactcctcttataaaatgcatctatttaacccaaaaactagaggccaac 361

                                                                        
Query: 362  caattaaatcagtttgnggtaatcatagtgcaacaattcaanaactcattactgaatcct 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  caattaaatcagtttgnggtaatcatagtgcaacaattcaanaactcattactgaatcct 421

                                                                        
Query: 422  taanatatttaaaaattgttgcaatgaataaggtaaatagtatatcttccaaaaaagttt 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  taanatatttaaaaattgttgcaatgaataaggtaaatagtatatcttccaaaaaagttt 481

                                                                        
Query: 482  atgaatccgaagttcaatgggtattaacaatccctgcaatttgggatgactctagtaaac 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  atgaatccgaagttcaatgggtattaacaatccctgcaatttgggatgactctagtaaac 541

                                                                        
Query: 542  aagtaatgannnnnnnnnntgtgcattacatgtaaaatcgggaaaggaaattagacattc 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aagtaatgannnnnnnnnntgtgcattacatgtaaaatcgggaaaggaaattagacattc 601

                                                                        
Query: 602  ttacgactttgcactcgatgaagcagaatcattaagaagaaatagattacgtcaagaaaa 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  ttacgactttgcactcgatgaagcagaatcattaagaagaaatagattacgtcaagaaaa 661

                                                                        
Query: 662  gaataaacccccagtggtacaactttgcctcatgatggattgcactggtagtatgggctc 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  gaataaacccccagtggtacaactttgcctcatgatggattgcactggtagtatgggctc 721

                                                                        
Query: 722  atggattaaagaaagtaaagaaaaaattatttcattaactggattattagccagctcata 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  atggattaaagaaagtaaagaaaaaattatttcattaactggattattagccagctcata 781

                                                                        
Query: 782  tgtaggtttggaattgaatgcaagtttcataggttatcgtgatattactgattccaatag 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  tgtaggtttggaattgaatgcaagtttcataggttatcgtgatattactgattccaatag 841

                                                                        
Query: 842  atttgaggttgtaccatttacaacggatatgggatatcttgcttccaaaattaatgaagc 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  atttgaggttgtaccatttacaacggatatgggatatcttgcttccaaaattaatgaagc 901

                                                                        
Query: 902  agttccaacaggtggtggtgatactccagaagatattacaggtgcttttttacaagtaaa 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  agttccaacaggtggtggtgatactccagaagatattacaggtgcttttttacaagtaaa 961

                                                                        
Query: 962  taacctatcgtggaaaccaactcatactaaacttgttgtccatgtaggcgatgcaccatg 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  taacctatcgtggaaaccaactcatactaaacttgttgtccatgtaggcgatgcaccatg 1021

                                                                        
Query: 1022 ccacggcaaaaaatatcataattgtgttgattcatatccagatggtgacccaagtggttt 1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 ccacggcaaaaaatatcataattgtgttgattcatatccagatggtgacccaagtggttt 1081

                                                                        
Query: 1082 ggttccagaaaaacttttacaaaaattatcttcaaaatcaattgactattatttcattaa 1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 ggttccagaaaaacttttacaaaaattatcttcaaaatcaattgactattatttcattaa 1141

                                                                        
Query: 1142 aatcacatctcaaactgataagatgattgaaatttttagaaagtcatatgactcacctcn 1201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1142 aatcacatctcaaactgataagatgattgaaatttttagaaagtcatatgactcacctca 1201

                                                                        
Query: 1202 nnnnnngattgtagttcatgaccttggatcagatgtctcaaaattattaccttctttagt 1261
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 aaaaaagattgtagttcatgaccttggatcagatgtctcaaaattattaccttctttagt 1261

                                            
Query: 1262 taactttgttcaaacctctattaccagattta 1293
            ||||||||||||||||||||||||||||||||
Sbjct: 1262 taactttgttcaaacctctattaccagattta 1293


>Contig-U06351-1 (Contig-U06351-1Q) /CSM_Contig/Contig-U06351-1Q.Seq.d
          Length = 507

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 728 taaagaaagtaaagaaaaaattattt 753
           |||||||| |||||||||||||||||
Sbjct: 361 taaagaaaataaagaaaaaattattt 386


>Contig-U04157-1 (Contig-U04157-1Q) /CSM_Contig/Contig-U04157-1Q.Seq.d
          Length = 605

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 737 taaagaaaaaattatttca 755
           |||||||||||||||||||
Sbjct: 546 taaagaaaaaattatttca 564


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,056
Number of Sequences: 6905
Number of extensions: 13056
Number of successful extensions: 1331
Number of sequences better than 10.0: 120
length of query: 1334
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1318
effective length of database: 5,564,391
effective search space: 7333867338
effective search space used: 7333867338
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Contig-U11872-1Q.Seq.d
         (1334 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ384393) Dictyostelium discoideum cDNA clone:ddc49e09, 3' ...  1269   0.0    4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...  1261   0.0    2
(BJ444198) Dictyostelium discoideum cDNA clone:ddv55h13, 3' ...  1203   0.0    2
(BJ425395) Dictyostelium discoideum cDNA clone:ddv55h13, 5' ...   573   0.0    2
(BJ369094) Dictyostelium discoideum cDNA clone:ddc49e09, 5' ...   319   4e-87  2
(EH783171) CNSS22400.b1_P07.ab1 CNS(LMS) yellow starthistle ...    52   0.055  1
(EH780893) CNSS19731.b1_F13.ab1 CNS(LMS) yellow starthistle ...    52   0.055  1
(EH778885) CNSS17714.b1_C13.ab1 CNS(LMS) yellow starthistle ...    52   0.055  1
(AC163335) Mus musculus chromosome 7, clone RP24-149G13, com...    50   0.22   1
(AC158345) Mus musculus chromosome 7, clone RP23-271M19, com...    50   0.22   1
(AC163005) Callicebus moloch clone LB5-96I1, WORKING DRAFT S...    38   0.48   2
(BX510923) Zebrafish DNA sequence from clone CH211-214J8 in ...    48   0.86   1
(AC099519) Homo sapiens chromosome 5 clone RP11-695O10, comp...    48   0.86   1
(AC099504) Homo sapiens chromosome 5 clone RP11-219L6, compl...    48   0.86   1
(AC008809) Homo sapiens chromosome 5 clone CTD-2093D7, compl...    48   0.86   1
(AC027027) Homo sapiens chromosome 5 clone RP11-695O10 map 5...    48   0.86   1
(AQ475401) CITBI-E1-2592G21.TF CITBI-E1 Homo sapiens genomic...    48   0.86   1
(EK003655) 1093139003437 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ949794) 1093018937028 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ883144) 1093018405489 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ858990) 1093017962282 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ847140) 1093017860360 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ779453) 1093011941786 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ759551) 1092963114846 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ685983) 1092955177981 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ677409) 1092955096814 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.86   1
(EJ461318) 1093018551480 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.86   1
(AI967616) Ljirnpest07-556-b3 Ljirnp Lambda HybriZap two-hyb...    48   0.86   1
(CP000923) Thermoanaerobacter sp. X514, complete genome.           48   0.86   1
(AE017308) Mycoplasma mobile 163K complete genome.                 36   1.8    13
(EG627124) EMBRYOF088229J20 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    38   2.0    3
(AF200386) Ceratosolen corneri cytochrome oxidase subunit I ...    38   2.2    2
(AM642353) Entamoeba dispar GSS, clone dispar92h09.p1k.            36   2.5    3
(AC078804) Homo sapiens chromosome 3 clone RP11-489M17, WORK...    40   3.3    5
(BX942837) Zebrafish DNA sequence from clone CH211-224B23 in...    46   3.4    1
(CU693175) Synthetic construct Homo sapiens gateway clone IM...    46   3.4    1
(AC123573) Medicago truncatula clone mth2-5n3, complete sequ...    46   3.4    1
(EF017203) Chlamys farreri clone CFFD196 microsatellite sequ...    46   3.4    1
(AC106531) Rattus norvegicus clone CH230-187L13, *** SEQUENC...    46   3.4    1
(AC099288) Rattus norvegicus clone CH230-206O7, *** SEQUENCI...    46   3.4    1
(AC096172) Rattus norvegicus clone CH230-11I9, *** SEQUENCIN...    46   3.4    1
(EJ379345) 1092963755688 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.4    1
(BB928725) Trifolium pratense cDNA clone:RCE39986.                 46   3.4    1
(BB927703) Trifolium pratense cDNA clone:RCE38814.                 46   3.4    1
(BB925500) Trifolium pratense cDNA clone:RCE34319.                 46   3.4    1
(BB925383) Trifolium pratense cDNA clone:RCE34183.                 46   3.4    1
(BB924369) Trifolium pratense cDNA clone:RCE33059.                 46   3.4    1
(FG932934) UCRVU09_CCNT12203_g1 Cowpea UCR 707 Mixed Tissue ...    46   3.4    1
(FG932933) UCRVU09_CCNT12203_b1 Cowpea UCR 707 Mixed Tissue ...    46   3.4    1
(FG912104) UCRVU08_CCNS8129_g1 Cowpea IT97K-461-4 Mixed Tiss...    46   3.4    1
(FG912103) UCRVU08_CCNS8129_b1 Cowpea IT97K-461-4 Mixed Tiss...    46   3.4    1
(FG867235) UCRVU07_CCNP4432_g1 Cowpea UCR 779 Mixed Tissue a...    46   3.4    1
(FG867234) UCRVU07_CCNP4432_b1 Cowpea UCR 779 Mixed Tissue a...    46   3.4    1
(FG834597) UCRVU04_CCNI16610_g1 Cowpea 524B Mixed Tissue and...    46   3.4    1
(FG834596) UCRVU04_CCNI16610_b1 Cowpea 524B Mixed Tissue and...    46   3.4    1
(FG825957) UCRVU04_CCNI9046_g1 Cowpea 524B Mixed Tissue and ...    46   3.4    1
(FF546438) MOPDW44TF MOP Vigna unguiculata cDNA 5', mRNA seq...    46   3.4    1
(FF537262) MOPA405TF MOP Vigna unguiculata cDNA 5', mRNA seq...    46   3.4    1
(FF392686) MOOCW41TF MOO Vigna unguiculata cDNA 5', mRNA seq...    46   3.4    1
(FF388806) MOOC456TF MOO Vigna unguiculata cDNA 5', mRNA seq...    46   3.4    1
(AC174299) Medicago truncatula clone mth2-80e19, complete se...    38   3.6    6
(AM430731) Vitis vinifera contig VV78X002660.13, whole genom...    38   4.6    2
(Z79753) Caenorhabditis elegans Cosmid F20G2.                      44   5.7    3
(BW932783) Branchiostoma floridae cDNA, neurula clone:bfne11...    32   6.3    3
(CC091998) CSU-K34.105A5.SP6 CSU-K34 Aedes aegypti genomic c...    32   6.3    3
(AM464700) Vitis vinifera contig VV78X076725.3, whole genome...    38   8.0    2
(CL801627) OR_CBa0013K04.f OR_CBa Oryza rufipogon genomic cl...    38   8.4    3
(FH716169) CHO_OF5050xn12r1.ab1 CHO_OF5 Nicotiana tabacum ge...    34   8.5    2
(BY892962) Cryptomeria japonica cDNA clone: CMFL042_E14, 5'e...    32   8.6    2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    40   9.0    8

>(BJ384393) Dictyostelium discoideum cDNA clone:ddc49e09, 3' end,
            single read.
          Length = 759

 Score = 1269 bits (640), Expect(4) = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Minus


Query: 561  tgtgcattacatgtaaaatcgggaaaggaaattagacattcttacgactttgcactcgat 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  tgtgcattacatgtaaaatcgggaaaggaaattagacattcttacgactttgcactcgat 700


Query: 621  gaagcagaatcattaagaagaaatagattacgtcaagaaaagaataaacccccagtggta 680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  gaagcagaatcattaagaagaaatagattacgtcaagaaaagaataaacccccagtggta 640


Query: 681  caactttgcctcatgatggattgcactggtagtatgggctcatggattaaagaaagtaaa 740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  caactttgcctcatgatggattgcactggtagtatgggctcatggattaaagaaagtaaa 580


Query: 741  gaaaaaattatttcattaactggattattagccagctcatatgtaggtttggaattgaat 800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  gaaaaaattatttcattaactggattattagccagctcatatgtaggtttggaattgaat 520


Query: 801  gcaagtttcataggttatcgtgatattactgattccaatagatttgaggttgtaccattt 860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519  gcaagtttcataggttatcgtgatattactgattccaatagatttgaggttgtaccattt 460


Query: 861  acaacggatatgggatatcttgcttccaaaattaatgaagcagttccaacaggtggtggt 920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459  acaacggatatgggatatcttgcttccaaaattaatgaagcagttccaacaggtggtggt 400


Query: 921  gatactccagaagatattacaggtgcttttttacaagtaaataacctatcgtggaaacca 980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399  gatactccagaagatattacaggtgcttttttacaagtaaataacctatcgtggaaacca 340


Query: 981  actcatactaaacttgttgtccatgtaggcgatgcaccatgccacggcaaaaaatatcat 1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339  actcatactaaacttgttgtccatgtaggcgatgcaccatgccacggcaaaaaatatcat 280


Query: 1041 aattgtgttgattcatatccagatggtgacccaagtggtttggttccagaaaaactttta 1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279  aattgtgttgattcatatccagatggtgacccaagtggtttggttccagaaaaactttta 220


Query: 1101 caaaaattatcttcaaaatcaattgactattatttcattaaaatcacatctcaaactgat 1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219  caaaaattatcttcaaaatcaattgactattatttcattaaaatcacatctcaaactgat 160


Query: 1161 aagatgattgaaatttttagaaagtcatatgactcacctc 1200
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 159  aagatgattgaaatttttagaaagtcatatgactcacctc 120

 Score = 71.9 bits (36), Expect(4) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Minus


Query: 1226 tggatcagatgtctcaaaattattaccttctttagt 1261
            ||||||||||||||||||||||||||||||||||||
Sbjct: 95   tggatcagatgtctcaaaattattaccttctttagt 60

 Score = 36.2 bits (18), Expect(4) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus


Query: 1208 gattgtagttcatgacct 1225
            ||||||||||||||||||
Sbjct: 112  gattgtagttcatgacct 95

 Score = 28.2 bits (14), Expect(4) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 1281 attaccagatttac 1294
            ||||||||||||||
Sbjct: 43   attaccagatttac 30

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,385,689,200
Number of extensions: 82178368
Number of successful extensions: 6428209
Number of sequences better than 10.0: 70
Length of query: 1334
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1310
Effective length of database: 97,308,875,965
Effective search space: 127474627514150
Effective search space used: 127474627514150
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11872-1 (Contig-U11872-1Q) /CSM_Contig/Contig-U11872-1Q.Seq.d
         (1334 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_32(AC117176|pid:none) Dictyostelium discoideum chromoso...   499   e-139
AL935186_4(AL935186|pid:none) Zebrafish DNA sequence from clone ...    86   4e-15
BX005238_5(BX005238|pid:none) Zebrafish DNA sequence from clone ...    86   4e-15
BX005238_7(BX005238|pid:none) Zebrafish DNA sequence from clone ...    86   4e-15
BC162264_1(BC162264|pid:none) Danio rerio heat shock protein 12B...    83   2e-14
AB007877_1(AB007877|pid:none) Homo sapiens KIAA0417 mRNA, comple...    83   3e-14
(O43301) RecName: Full=Heat shock 70 kDa protein 12A;  &AB385329...    83   3e-14
(Q9CZJ2) RecName: Full=Heat shock 70 kDa protein 12B;  &AK012548...    81   7e-14
BC090857_1(BC090857|pid:none) Homo sapiens heat shock 70kD prote...    80   2e-13
AK056712_1(AK056712|pid:none) Homo sapiens cDNA FLJ32150 fis, cl...    80   2e-13
BC122350_1(BC122350|pid:none) Danio rerio zgc:153612, mRNA (cDNA...    76   3e-12
BC143932_1(BC143932|pid:none) Homo sapiens heat shock 70kD prote...    75   5e-12
CP000283_133(CP000283|pid:none) Rhodopseudomonas palustris BisB5...    70   1e-10
AC115592_24(AC115592|pid:none) Dictyostelium discoideum chromoso...    70   2e-10
CP000463_230(CP000463|pid:none) Rhodopseudomonas palustris BisA5...    69   4e-10
AE017356_24(AE017356|pid:none) Cryptococcus neoformans var. neof...    68   9e-10
CP001096_569(CP001096|pid:none) Rhodopseudomonas palustris TIE-1...    65   6e-09
CP000155_907(CP000155|pid:none) Hahella chejuensis KCTC 2396, co...    59   4e-07
AK294672_1(AK294672|pid:none) Homo sapiens cDNA FLJ54655 complet...    59   5e-07
CU633438_196(CU633438|pid:none) Podospora anserina genomic DNA c...    56   3e-06
AC116977_41(AC116977|pid:none) Dictyostelium discoideum chromoso...    55   4e-06
AC116305_104(AC116305|pid:none) Dictyostelium discoideum chromos...    54   1e-05
CP000155_5640(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    54   1e-05
AM746676_2221(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    52   5e-05
CP000113_5001(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    52   6e-05
CP000155_3141(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...    51   8e-05
CP000383_229(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    48   7e-04
CP000568_3076(CP000568|pid:none) Clostridium thermocellum ATCC 2...    47   0.002
CP000509_141(CP000509|pid:none) Nocardioides sp. JS614, complete...    47   0.002
CP001357_1117(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    44   0.010
CP001393_2029(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    44   0.013
CP000771_94(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1,...    43   0.023
CP000510_1443(CP000510|pid:none) Psychromonas ingrahamii 37, com...    41   0.11
CP001099_212(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ...    41   0.11
BX908809_19(BX908809|pid:none) Neurospora crassa DNA linkage gro...    40   0.15
CP001110_1027(CP001110|pid:none) Pelodictyon phaeoclathratiforme...    40   0.15
AC117176_31(AC117176|pid:none) Dictyostelium discoideum chromoso...    40   0.15
CP000254_470(CP000254|pid:none) Methanospirillum hungatei JF-1, ...    40   0.15
CP001108_938(CP001108|pid:none) Prosthecochloris aestuarii DSM 2...    40   0.19
CP001097_1334(CP001097|pid:none) Chlorobium limicola DSM 245, co...    39   0.55
AP007175_438(AP007175|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.72
CP001634_1377(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c...    38   0.95
CP000393_1057(CP000393|pid:none) Trichodesmium erythraeum IMS101...    38   0.95
CP001634_954(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co...    37   1.6
CP000656_4859(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    35   8.0

>AC117176_32(AC117176|pid:none) Dictyostelium discoideum chromosome 2
            map 5018074-5200947 strain AX4, complete sequence.
          Length = 476

 Score =  499 bits (1284), Expect = e-139
 Identities = 245/246 (99%), Positives = 246/246 (100%)
 Frame = +3

Query: 561  CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPVVQLCLMMDCTGSMGSWIKESK 740
            CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPP+VQLCLMMDCTGSMGSWIKESK
Sbjct: 231  CALHVKSGKEIRHSYDFALDEAESLRRNRLRQEKNKPPMVQLCLMMDCTGSMGSWIKESK 290

Query: 741  EKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPTGGG 920
            EKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPTGGG
Sbjct: 291  EKIISLTGLLASSYVGLELNASFIGYRDITDSNRFEVVPFTTDMGYLASKINEAVPTGGG 350

Query: 921  DTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLL 1100
            DTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLL
Sbjct: 351  DTPEDITGAFLQVNNLSWKPTHTKLVVHVGDAPCHGKKYHNCVDSYPDGDPSGLVPEKLL 410

Query: 1101 QKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFVQTS 1280
            QKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFVQTS
Sbjct: 411  QKLSSKSIDYYFIKITSQTDKMIEIFRKSYDSPQKKIVVHDLGSDVSKLLPSLVNFVQTS 470

Query: 1281 ITRFTN 1298
            ITRFTN
Sbjct: 471  ITRFTN 476

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,146,046,255
Number of extensions: 43082774
Number of successful extensions: 95604
Number of sequences better than 10.0: 45
Number of HSP's gapped: 95546
Number of HSP's successfully gapped: 46
Length of query: 444
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 312
Effective length of database: 623,955,076
Effective search space: 194673983712
Effective search space used: 194673983712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.84  gvh: 0.50  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for Contig-U11872-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0