| Contig-U11858-1 |
| Contig ID |
Contig-U11858-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1529 |
| Chromosome number (1..6, M) |
3F |
| Chromosome length |
19366 |
| Start point |
1278 |
| End point |
1001 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
4 |
| Number of EST |
5 |
| Link to clone list |
U11858 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.27 |
| Homology vs DNA |
Query= Contig-U11858-1 (Contig-U11858-1Q) /CSM_Contig/Contig-U11858-1Q.Seq.d
(1539 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 995 0.0 3
(M11340) Slime mold (D.discoideum) transposon DIRS-1, clone ... 916 0.0 3
(M11339) Slime mold (D.discoideum) transposon DIRS-1, comple... 916 0.0 3
(BJ337797) Dictyostelium discoideum cDNA clone:dda59b06, 5' ... 995 0.0 1
(AF298624) Dictyostelium discoideum chromosome 2 repeat region. 868 0.0 3
(AU060833) Dictyostelium discoideum slug cDNA, clone SLB649. 876 0.0 2
(BJ368565) Dictyostelium discoideum cDNA clone:ddc47p06, 5' ... 751 0.0 2
(AF017046) Dictyostelium discoideum LTR-retrotransposon Skip... 434 e-141 2
(BJ383786) Dictyostelium discoideum cDNA clone:ddc47p06, 3' ... 460 e-125 1
(AU039737) Dictyostelium discoideum slug cDNA, clone SLG296. 450 e-122 1
(K03065) Slime mold (D.discoideum) mRNA complementary to the... 82 7e-26 2
(K03063) Slime mold (D.discoideum) mRNA complementary to lef... 82 7e-26 2
(K01221) Slime mold (D.discoideum) transposable element Tdd-... 98 3e-18 2
(AC204181) Nomascus leucogenys leucogenys clone CH271-201L13... 54 0.016 1
(AC169137) Colobus guereza clone CH272-273J11, WORKING DRAFT... 54 0.016 1
(AC165379) Colobus guereza clone CH272-444F24, WORKING DRAFT... 54 0.016 1
(CT025157) Mouse DNA sequence from clone RP23-292D13 on chro... 52 0.064 1
(AC154315) Mus musculus BAC clone RP23-348I6 from chromosome... 52 0.064 1
(AF003139) Caenorhabditis elegans cosmid F53G12, complete se... 44 0.52 3
(AJ566511) Theobroma cacao microsatellite, clone mTcCIR183. 38 0.73 2
(AC158915) Mus musculus chromosome 8, clone RP23-146N20, com... 48 1.00 1
(AC118012) Mus musculus chromosome 8, clone RP23-454D11, com... 48 1.00 1
(AL935200) Zebrafish DNA sequence from clone CH211-237I5. 46 3.9 1
(AB145981) Homo sapiens DNA, STS on chromosome 18, D18S0355i... 46 3.9 1
(AC158903) Mus musculus chromosome 18, clone RP23-318E22, co... 46 3.9 1
(AC140283) Mus musculus BAC clone RP24-510I14 from chromosom... 46 3.9 1
(AC092855) Mus musculus strain C57BL/6J chromosome 3 clone r... 46 3.9 1
(DJ470990) Method for analysing genome using microsatellite ... 46 3.9 1
(EU115745) Dictyostelium discoideum Ddi2426 RNA, complete se... 46 3.9 1
(EU115418) Dictyostelium discoideum Ddi2099 RNA, complete se... 46 3.9 1
(EU115342) Dictyostelium discoideum Ddi2023 RNA, complete se... 46 3.9 1
(AC100794) Homo sapiens chromosome 18, clone CTD-2559F21, co... 46 3.9 1
(AC027141) Homo sapiens chromosome 18, clone RP11-29E21, com... 46 3.9 1
(AC024908) Homo sapiens 10 BAC RP11-446F3 (Roswell Park Canc... 46 3.9 1
(AC011740) Homo sapiens BAC clone RP11-106G13 from 2, comple... 46 3.9 1
(BX470179) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 3.9 1
(AC183329) Chlorocebus aethiops clone CH252-463M21, WORKING ... 46 3.9 1
(AC165996) Pongo abelii clone CH253-60N5, WORKING DRAFT SEQU... 46 3.9 1
(AC165375) Pongo abelii clone CH253-499K6, WORKING DRAFT SEQ... 46 3.9 1
(AC164920) Macaca mulatta clone CH250-415F2, WORKING DRAFT S... 46 3.9 1
(AC164919) Macaca mulatta clone CH250-244I20, WORKING DRAFT ... 46 3.9 1
(EK113211) 1092963142461 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(EK104533) 1092963039532 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(CL582982) OB__Ba0048N14.f OB__Ba Oryza brachyantha genomic ... 46 3.9 1
(EC014552) 6643112 KZ41 Caenorhabditis elegans cDNA clone 18... 46 3.9 1
(FD584506) HA_MX2_43c12_SP6 Lobster Multiple Tissues, Normal... 46 3.9 1
>(AC115680) Dictyostelium discoideum chromosome 2 map 4915084-5005461
strain AX4, complete sequence.
Length = 90373
Score = 995 bits (502), Expect(3) = 0.0
Identities = 502/502 (100%)
Strand = Plus / Plus
Query: 579 caaacaagtttggaaagaattgggtcttccaaacttttgtcaagaggtcgtaaatggatt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72456 caaacaagtttggaaagaattgggtcttccaaacttttgtcaagaggtcgtaaatggatt 72515
Query: 639 aaaagtccatctacttccaaacttcaagccgatgccaaacccaattccgatttcaattcc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72516 aaaagtccatctacttccaaacttcaagccgatgccaaacccaattccgatttcaattcc 72575
Query: 699 agagggtccaaaatcagattgcatcacaaaggaagtacaagacttgttattagacgatgc 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72576 agagggtccaaaatcagattgcatcacaaaggaagtacaagacttgttattagacgatgc 72635
Query: 759 catcgaacaagtacttccaaaccgttattcaaagcgcgttttttactccaacgtgtttac 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72636 catcgaacaagtacttccaaaccgttattcaaagcgcgttttttactccaacgtgtttac 72695
Query: 819 ggttccaaaacctggaacgaatctacatcgtccagttctcgatttaaaaaggttaaacac 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72696 ggttccaaaacctggaacgaatctacatcgtccagttctcgatttaaaaaggttaaacac 72755
Query: 879 ttacatcaacaaccaatcattcaagatggaaggaatcaagaatctaccatcaatggtcaa 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72756 ttacatcaacaaccaatcattcaagatggaaggaatcaagaatctaccatcaatggtcaa 72815
Query: 939 acaaggttattacatggtaaaactcgatatcaagaaagcttacctccacgttttagtaga 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72816 acaaggttattacatggtaaaactcgatatcaagaaagcttacctccacgttttagtaga 72875
Query: 999 tccgcaatacagagacttatttcgcttcgtgtggaaaggttcgcactaccgttggaaaac 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72876 tccgcaatacagagacttatttcgcttcgtgtggaaaggttcgcactaccgttggaaaac 72935
Query: 1059 aatgccgttcgggttatcgaca 1080
||||||||||||||||||||||
Sbjct: 72936 aatgccgttcgggttatcgaca 72957
Score = 795 bits (401), Expect(3) = 0.0
Identities = 434/445 (97%)
Strand = Plus / Plus
Query: 124 gatatcaacaataaaatatgtctaccactgttaataataatgatgcctctagtagtagta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71401 gatatcaacaataaaatatgtctaccactgttaataataatgatgcctctagtagtagta 71460
Query: 184 cttctgcctctaatagcgccgaatcctttgatttaagaatgaaatcaatagaagatcaaa 243
| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct: 71461 cctctgcctctaatagcgctgaatcctttgatttaagaatgaaatcaatggaggatcaaa 71520
Query: 244 tcaacaacctttccttagcctttacaagattcatgaaagaatctatgttctcatctaata 303
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 71521 tcaacaacctttccttagcctttacaagattcatgaaagaacctatgttctcttctaata 71580
Query: 304 ccaactcacgtagccaaccttctcatgatgactctgacaccgagaatgaacaaagtgatg 363
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 71581 ccaactcacgtagccaaccttctcatgataactctgacaccgagaatgaacaaagtgaag 71640
Query: 364 atgaatcaagtaacaatgtcgatgttccaaccgattatcaattatccgatactttacttg 423
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 71641 atgaatcaagtaacaatgtcgatgttccaaccgattatcaattatccgataccttacttg 71700
Query: 424 gtcagtacaaacatattgtaaacaatcaaggtttactcgtcgaagaagaatgtatcctca 483
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71701 gtcagtacaaacatatggtaaacaataaaggtttactcgtcgaagaagaatgtatcctca 71760
Query: 484 agaaagatgagatatccgaattgaataaagtattcaactttccatctaacttccaagtga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71761 agaaagatgagatatccgaattgaataaagtattcaactttccatctaacttccaagtga 71820
Query: 544 atgtcgctccattcggtacacctga 568
|||||||||||||||||||||||||
Sbjct: 71821 atgtcgctccattcggtacacctga 71845
Score = 105 bits (53), Expect(3) = 0.0
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 1 gatttattttatttgggaattcctcctatatatatttaagatacacacacaca 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71275 gatttattttatttgggaattcctcctatatatatttaagatacacacacaca 71327
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,105,916,396
Number of extensions: 94005908
Number of successful extensions: 5208249
Number of sequences better than 10.0: 47
Length of query: 1539
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1515
Effective length of database: 97,308,875,965
Effective search space: 147422947086975
Effective search space used: 147422947086975
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 1 |
| Homology vs Protein |
Query= Contig-U11858-1 (Contig-U11858-1Q) /CSM_Contig/Contig-U11858-1Q.Seq.d
(1539 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
C24785(C24785)hypothetical protein 668 - slime mold (Dictyosteli... 346 2e-93
B24785(B24785)hypothetical protein 1028 - slime mold (Dictyostel... 306 2e-81
M11339_3(M11339|pid:none) Slime mold (D.discoideum) transposon D... 281 3e-74
A24785(A24785)hypothetical protein 335 - slime mold (Dictyosteli... 235 3e-60
M11339_1(M11339|pid:none) Slime mold (D.discoideum) transposon D... 234 6e-60
EU528617_1(EU528617|pid:none) Daphnia pulex clone D11 retrotrans... 87 1e-15
EU528616_1(EU528616|pid:none) Daphnia pulex clone D5 retrotransp... 75 5e-12
EF710659_7(EF710659|pid:none) Glyptapanteles indiensis clone BAC... 69 5e-10
AF541963_5(AF541963|pid:none) Glycine max cv Williams 82 BAC clo... 55 9e-06
AL663018_10(AL663018|pid:none) Oryza sativa genomic DNA, chromos... 50 3e-04
FN392321_863(FN392321|pid:none) Pichia pastoris GS115 chromosome... 49 5e-04
D10032_1(D10032|pid:none) Baboon endogenous virus strain M7 prov... 48 8e-04
DQ822074_4(DQ822074|pid:none) Dioscorea bacilliform virus clone ... 48 8e-04
AJ133521_2(AJ133521|pid:none) Drosophila buzzatii osvaldo retrot... 48 8e-04
DQ822073_3(DQ822073|pid:none) Dioscorea bacilliform virus clone ... 48 8e-04
AF221065_1(AF221065|pid:none) DG-75 Murine leukemia virus, compl... 47 0.002
AM425694_7(AM425694|pid:none) Vitis vinifera contig VV78X190235.... 47 0.002
AF492764_2(AF492764|pid:none) Drosophila melanogaster transposon... 47 0.002
AY198186_2(AY198186|pid:none) Saccharomyces paradoxus Ty3-like r... 46 0.003
AE010299_2794(AE010299|pid:none) Methanosarcina acetivorans str.... 46 0.003
FM992694_183(FM992694|pid:none) Candida dubliniensis CD36 chromo... 46 0.004
FM992694_180(FM992694|pid:none) Candida dubliniensis CD36 chromo... 46 0.004
DQ887187_2(DQ887187|pid:none) Drosophila melanogaster clone 4.1 ... 46 0.004
AF033821_2(AF033821|pid:none) Drosophila melanogaster gypsy tran... 46 0.004
X03734_1(X03734|pid:none) D. melanogaster retrotransposon gypsy ... 46 0.004
DQ444469_1(DQ444469|pid:none) Nosema bombycis retrotransposon Nb... 46 0.004
(P10401) RecName: Full=Retrovirus-related Pol polyprotein from t... 46 0.004
EF591043_2(EF591043|pid:none) Drosophila melanogaster clone B18 ... 46 0.004
DQ887186_2(DQ887186|pid:none) Drosophila melanogaster clone B10 ... 46 0.004
AY818896_1(AY818896|pid:none) Murine leukemia virus serotype HEM... 46 0.004
EF591042_2(EF591042|pid:none) Drosophila melanogaster clone 8.1 ... 46 0.004
AL844504_144(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 45 0.005
S70430(S70430)hypothetical protein 4 - fruit fly (Drosophila mel... 45 0.005
AY236763_2(AY236763|pid:none) Recombinant M-MuLV/RaLV retrovirus... 45 0.005
(P20825) RecName: Full=Retrovirus-related Pol polyprotein from t... 45 0.007
(Q7TD08) RecName: Full=Enzymatic polyprotein; Includes: RecNam... 45 0.007
AF214005_1(AF214005|pid:none) Banana streak virus polyprotein ge... 45 0.007
AJ009736_2(AJ009736|pid:none) Drosophila melanogaster Idefix ret... 45 0.009
AF454635_6(AF454635|pid:none) Mirabilis mosaic virus, complete g... 45 0.009
(Q6XKE6) RecName: Full=Genome polyprotein; Contains: RecName: ... 45 0.009
(P26809) RecName: Full=Pol polyprotein; Contains: RecName: Ful... 44 0.012
AY236762_2(AY236762|pid:none) Recombinant M-MuLV/RaLV retrovirus... 44 0.012
EU884191_5(EU884191|pid:none) Citrus yellow mosaic virus from In... 44 0.012
M89923_3(M89923|pid:none) Sugarcane bacilliform Mor virus ORF1, ... 44 0.012
AE014188_433(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.012
AY999005_1(AY999005|pid:none) Mus musculus castaneus endogenous ... 44 0.012
(Q99315) RecName: Full=Transposon Ty3-G Gag-Pol polyprotein; Alt... 44 0.016
DQ366148_1(DQ366148|pid:none) Mus musculus isolate MelARV endoge... 44 0.016
DQ366147_1(DQ366147|pid:none) Mus musculus endogenous ecotropic ... 44 0.016
(P03355) RecName: Full=Pol polyprotein; Contains: RecName: Ful... 44 0.016
AM480561_2(AM480561|pid:none) Vitis vinifera contig VV78X172208.... 44 0.016
EU075331_1(EU075331|pid:none) Mutant Murine leukemia virus clone... 44 0.016
EU075329_1(EU075329|pid:none) Murine leukemia virus isolate 4070... 44 0.016
AY180916_3(AY180916|pid:none) Drosophila melanogaster blood tran... 44 0.016
EU035300_1(EU035300|pid:none) Xenotropic murine leukemia virus i... 44 0.016
(Q7LHG5) RecName: Full=Transposon Ty3-I Gag-Pol polyprotein; Alt... 44 0.016
GNMV1M(A03956)HIV-1 retropepsin (EC 3.4.23.16) - Moloney murine ... 44 0.016
M23367_2(M23367|pid:none) Saccharomyces cerevisiae TY3-2 complet... 44 0.016
M34549_2(M34549|pid:none) Saccharomyces cerevisiae tRNA-Cys gene... 44 0.016
DQ241301_1(DQ241301|pid:none) Xenotropic MuLV-related virus VP35... 44 0.016
AF033811_1(AF033811|pid:none) Moloney murine leukemia virus, com... 44 0.016
DQ366149_1(DQ366149|pid:none) Murine leukemia virus isolate NeRV... 44 0.016
AB187566_2(AB187566|pid:none) Murine leukemia virus Graffi GV-1.... 44 0.016
EU075330_1(EU075330|pid:none) Mutant Murine leukemia virus clone... 44 0.016
EF185282_1(EF185282|pid:none) Xenotropic MuLV-related virus VP62... 44 0.016
DQ241302_1(DQ241302|pid:none) Xenotropic MuLV-related virus VP42... 44 0.016
(P03356) RecName: Full=Pol polyprotein; Contains: RecName: Ful... 44 0.016
EU708317_3(EU708317|pid:none) Citrus yellow mosaic virus, comple... 44 0.016
AM910986_136(AM910986|pid:none) Plasmodium knowlesi strain H chr... 44 0.016
AB187565_2(AB187565|pid:none) Murine leukemia virus Graffi GV-1.... 44 0.016
AM478438_2(AM478438|pid:none) Vitis vinifera contig VV78X003232.... 44 0.016
EU489744_3(EU489744|pid:none) Citrus yellow mosaic virus isolate... 44 0.016
AF169256_1(AF169256|pid:none) Murine leukemia virus SL3-3, compl... 44 0.016
AM478438_3(AM478438|pid:none) Vitis vinifera contig VV78X003232.... 44 0.016
U60065_2(U60065|pid:none) Gibbon leukemia virus strain X, comple... 44 0.016
Z46728_15(Z46728|pid:none) S.cerevisiae chromosome IX cosmid 9910. 44 0.016
AM494971_436(AM494971|pid:none) Leishmania braziliensis chromoso... 44 0.016
X95426_1(X95426|pid:none) Dioscorea alata bacilliform virus (clo... 44 0.016
AF411814_1(AF411814|pid:none) Amphotropic murine leukemia virus ... 44 0.021
AY252102_1(AY252102|pid:none) Murine leukemia virus strain BM5ec... 44 0.021
AJ277091_3(AJ277091|pid:none) Sugarcane bacilliform IM virus com... 44 0.021
EU090956_1(EU090956|pid:none) Dahlia mosaic virus-Holland revers... 44 0.021
M87550_2(M87550|pid:none) Murine leukemia virus putative gag pro... 44 0.021
AL844505_158(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.021
M32803_1(M32803|pid:none) Moloney murine leukemia virus pol gene... 44 0.021
(P26810) RecName: Full=Pol polyprotein; Contains: RecName: Ful... 44 0.021
X95428_1(X95428|pid:none) Dioscorea alata bacilliform virus (clo... 44 0.021
X58484_2(X58484|pid:none) Simian foamy virus type-1 gag gene (co... 44 0.021
AL031744_7(AL031744|pid:none) Plasmodium falciparum DNA from MAL... 44 0.021
D88386_1(D88386|pid:none) Friend murine leukemia virus genomic R... 44 0.021
DQ444468_1(DQ444468|pid:none) Nosema bombycis retrotransposon Nb... 44 0.021
S15566(S15566)pol protein - simian foamy virus 44 0.021
(Q05654) RecName: Full=Retrotransposable element Tf2 155 kDa pro... 43 0.027
S18738(S18738)pol protein - simian foamy virus (fragment) 43 0.027
AM429380_1(AM429380|pid:none) Vitis vinifera contig VV78X044097.... 43 0.027
AL035248_8(AL035248|pid:none) S.pombe chromosome I cosmid c167. 43 0.027
(P23074) RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125P... 43 0.027
AY099324_1(AY099324|pid:none) Porcine endogenous retrovirus B ga... 43 0.036
Y17013_2(Y17013|pid:none) Porcine endogenous retrovirus gag, pol... 43 0.036
AF541947_2(AF541947|pid:none) Drosophila melanogaster transposon... 43 0.036
T31657(T31657) reverse transcriptase homolog - sea squirt (Ciona... 43 0.036
AJ238747_3(AJ238747|pid:none) Nicotiana tabacum pararetrovirus-l... 43 0.036
U77599_1(U77599|pid:none) Sus scrofa polyprotein gene, protease ... 43 0.036
AY056035_2(AY056035|pid:none) Porcine endogenous retrovirus clon... 43 0.036
AJ133818_1(AJ133818|pid:none) Porcine endogenous retrovirus type... 43 0.036
AM479657_1(AM479657|pid:none) Vitis vinifera contig VV78X062003.... 43 0.036
A66553_2(A66553|pid:none) Sequence 3 from Patent WO9740167. 43 0.036
AJ000387_3(AJ000387|pid:none) Drosophila melanogaster ZAM retroe... 43 0.036
AM472681_1(AM472681|pid:none) Vitis vinifera contig VV78X171662.... 43 0.036
AJ133817_1(AJ133817|pid:none) Porcine endogenous retrovirus type... 43 0.036
AF136491_1(AF136491|pid:none) Murine leukemia virus erv1 polymer... 43 0.036
EF133960_2(EF133960|pid:none) Porcine endogenous type C retrovir... 43 0.036
AC069473_21(AC069473|pid:none) Arabidopsis thaliana chromosome 3... 43 0.036
AJ133816_1(AJ133816|pid:none) Porcine endogenous retrovirus type... 43 0.036
EU489745_3(EU489745|pid:none) Citrus yellow mosaic virus isolate... 42 0.047
EU030001_1(EU030001|pid:none) RD114 retrovirus isolate SC3C, com... 42 0.047
U63133_1(U63133|pid:none) Mus musculus C-type ecotropic endogeno... 42 0.047
(P27401) RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125P... 42 0.047
M74509_1(M74509|pid:none) Human endogenous retrovirus type C onc... 42 0.047
AY236757_2(AY236757|pid:none) Recombinant M-MuLV/RaLV retrovirus... 42 0.047
GNLJLK(B40820) pol polyprotein - simian foamy virus (type 3, str... 42 0.047
EU155202_1(EU155202|pid:none) Dahlia mosaic virus isolate DMV-Ho... 42 0.061
EF203675_1(EF203675|pid:none) Dahlia mosaic virus isolate 1 reve... 42 0.061
(P10394) RecName: Full=Retrovirus-related Pol polyprotein from t... 42 0.061
AY928609_2(AY928609|pid:none) Drosophila melanogaster chromosome... 42 0.061
DQ890022_204(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 42 0.061
AM437417_1(AM437417|pid:none) Vitis vinifera contig VV78X239580.... 42 0.061
(Q9TTC1) RecName: Full=Pro-Pol polyprotein; AltName: Full=Pr125P... 42 0.061
AY750155_3(AY750155|pid:none) Banana streak virus strain Acumina... 42 0.061
AF530470_1(AF530470|pid:none) Antheraea mylitta Tamy retrotransp... 42 0.061
AY928610_2(AY928610|pid:none) Drosophila melanogaster chromosome... 42 0.061
AM436045_5(AM436045|pid:none) Vitis vinifera contig VV78X243800.... 42 0.061
AY236761_2(AY236761|pid:none) Recombinant M-MuLV/RaLV retrovirus... 42 0.061
EU155201_1(EU155201|pid:none) Dahlia mosaic virus isolate DaMV-S... 42 0.079
AF541948_2(AF541948|pid:none) Drosophila melanogaster transposon... 42 0.079
AF362957_1(AF362957|pid:none) Aspergillus flavus genomic probe p... 42 0.079
AP008215_89(AP008215|pid:none) Oryza sativa (japonica cultivar-g... 42 0.079
(Q00962) RecName: Full=Enzymatic polyprotein; Includes: RecNam... 42 0.079
U89994_2(U89994|pid:none) Drosophila melanogaster burdock retrot... 42 0.079
EU155198_1(EU155198|pid:none) Dahlia mosaic virus isolate DaMV1 ... 42 0.079
AF133052_3(AF133052|pid:none) Walleye epidermal hyperplasia viru... 42 0.079
BX088700_16(BX088700|pid:none) DNA centromeric region sequence f... 42 0.079
AM468506_1(AM468506|pid:none) Vitis vinifera contig VV78X270902.... 42 0.079
U94692_2(U94692|pid:none) Rauscher murine leukemia virus, comple... 42 0.079
EF203676_1(EF203676|pid:none) Dahlia mosaic virus isolate 2 trun... 42 0.079
AK119906_1(AK119906|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.079
AY309479_1(AY309479|pid:none) Dahlia mosaic virus polyprotein (V... 42 0.079
DQ408427_2(DQ408427|pid:none) Drosophila buzzatii Isis retrotran... 42 0.079
AY859498_1(AY859498|pid:none) Citrus yellow mosaic virus polypro... 42 0.079
(Q6CMM2) RecName: Full=Spindle assembly checkpoint component MAD... 41 0.10
(Q9UR07) RecName: Full=Retrotransposable element Tf2 155 kDa pro... 41 0.10
(P03554) RecName: Full=Enzymatic polyprotein; Includes: RecNam... 41 0.10
AC150244_6(AC150244|pid:none) Medicago truncatula chromosome 7 c... 41 0.10
(Q02964) RecName: Full=Enzymatic polyprotein; Includes: RecNam... 41 0.10
AF314096_2(AF314096|pid:none) Magnaporthe grisea truncated trans... 41 0.10
(P03555) RecName: Full=Enzymatic polyprotein; Includes: RecNam... 41 0.10
(Q9C0R2) RecName: Full=Retrotransposable element Tf2 155 kDa pro... 41 0.10
EU155195_1(EU155195|pid:none) Cauliflower mosaic virus isolate P... 41 0.10
EU155193_1(EU155193|pid:none) Cauliflower mosaic virus isolate P... 41 0.10
S44816(S44816)F44E2.1 protein - Caenorhabditis elegans 41 0.14
AL606459_2(AL606459|pid:none) Oryza sativa genomic DNA, chromoso... 41 0.14
L23646_13(L23646|pid:none) Caenorhabditis elegans cosmid F44E2, ... 41 0.14
AF033260_1(AF033260|pid:none) Porcine endogenous type C retrovir... 41 0.14
AF038600_2(AF038600|pid:none) Sus scrofa porcine endogenous retr... 41 0.14
AJ279056_2(AJ279056|pid:none) Porcine endogenous retrovirus prov... 41 0.14
M65026_2(M65026|pid:none) Rice tungro bacilliform virus ORF2, OR... 41 0.14
T18572(T18572) gag, pol and env protein precursor - Caenorhabdit... 41 0.14
AY570980_2(AY570980|pid:none) Porcine endogenous retrovirus C/A ... 41 0.14
AF435966_2(AF435966|pid:none) Porcine endogenous retrovirus isol... 41 0.14
DQ889228_2(DQ889228|pid:none) Drosophila erecta endogenous virus... 41 0.14
DQ444467_1(DQ444467|pid:none) Nosema bombycis retrotransposon Nb... 41 0.14
AM229313_1(AM229313|pid:none) Porcine endogenous retrovirus C pr... 41 0.14
AM229311_1(AM229311|pid:none) Porcine endogenous retrovirus C pr... 41 0.14
S11480(S11480)hypothetical protein 4 - Commelina yellow mottle v... 41 0.14
EU610285_1(EU610285|pid:none) HIV-1 isolate 03-100979 pol protei... 40 0.18
AF506028_20(AF506028|pid:none) Poncirus trifoliata citrus triste... 40 0.18
AM432134_1(AM432134|pid:none) Vitis vinifera contig VV78X136056.... 40 0.18
AF053745_3(AF053745|pid:none) Mus dunni endogenous virus complet... 40 0.18
EU569831_5(EU569831|pid:none) Eupatorium vein clearing virus, co... 40 0.18
EU853709_3(EU853709|pid:none) Cycad leaf necrosis virus, complet... 40 0.18
DQ889229_2(DQ889229|pid:none) Drosophila erecta endogenous virus... 40 0.18
AJ864642_1(AJ864642|pid:none) Orpinomyces sp. OUS1 partial putat... 40 0.18
AL606641_19(AL606641|pid:none) Oryza sativa genomic DNA, chromos... 40 0.23
AF113831_3(AF113831|pid:none) Rice tungro bacilliform virus stra... 40 0.23
(P27502) RecName: Full=Polyprotein P3; AltName: Full=P194 protei... 40 0.23
AF113832_3(AF113832|pid:none) Rice tungro bacilliform virus stra... 40 0.23
AM502232_141(AM502232|pid:none) Leishmania infantum chromosome 14. 40 0.23
AM483642_2(AM483642|pid:none) Vitis vinifera contig VV78X226434.... 40 0.23
AF140604_6(AF140604|pid:none) Cauliflower mosaic virus isolate X... 40 0.23
AJ002234_3(AJ002234|pid:none) Banana streak OL virus coding regi... 40 0.23
DQ451009_3(DQ451009|pid:none) Banana streak virus isolate GD, co... 40 0.23
(Q6ZZF5) RecName: Full=Oxidation resistance protein 1; Flags: Fr... 40 0.23
AM910996_270(AM910996|pid:none) Plasmodium knowlesi strain H chr... 40 0.23
DQ859899_3(DQ859899|pid:none) Banana streak virus isolate TRY, c... 40 0.23
D10774_3(D10774|pid:none) Rice tungro bacilliform virus DNA, com... 40 0.23
FN392319_381(FN392319|pid:none) Pichia pastoris GS115 chromosome... 40 0.23
AF113830_3(AF113830|pid:none) Rice tungro bacilliform virus stra... 40 0.23
AB039752_1(AB039752|pid:none) Yarrowia lipolytica sup35 gene for... 40 0.30
AC136141_29(AC136141|pid:none) Medicago truncatula clone mth2-12... 40 0.30
AM443849_4(AM443849|pid:none) Vitis vinifera contig VV79X004539.... 40 0.30
AL731612_10(AL731612|pid:none) Oryza sativa genomic DNA, chromos... 39 0.39
AM502253_450(AM502253|pid:none) Leishmania infantum chromosome 35. 39 0.39
S46347(S46347) pol polyprotein - simian immunodeficiency virus S... 39 0.39
AP007151_1375(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 39 0.39
EU155199_1(EU155199|pid:none) Dahlia mosaic virus isolate DaMV3 ... 39 0.39
CR855107_8(CR855107|pid:none) Oryza sativa (indica cultivar-grou... 39 0.39
AJ314596_3(AJ314596|pid:none) Rice tungro bacilliform virus comp... 39 0.39
B36329(B36329)hypothetical protein 2 - cabbage looper transposon... 39 0.39
AF014792_1(AF014792|pid:none) Walleye epidermal hyperplasia viru... 39 0.39
AL844509_71(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 39 0.51
(Q54U64) RecName: Full=Putative uncharacterized protein DDB_G028... 39 0.51
EF029069_2(EF029069|pid:none) HIV-1 isolate U.NL.01.H10986_C11 f... 39 0.51
U04327_2(U04327|pid:none) Simian foamy virus SFVcpz, complete ge... 39 0.51
AC096687_18(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ... 39 0.51
EF029068_2(EF029068|pid:none) HIV-1 isolate U.NL.01.H10986_D1 fr... 39 0.51
AJ580407_2(AJ580407|pid:none) Simian immunodeficiency virus SIVd... 39 0.51
X97304_5(X97304|pid:none) Strawberry vein banding virus complete... 39 0.51
EU034539_3(EU034539|pid:none) Bougainvillea spectabilis chloroti... 39 0.67
AY113457_1(AY113457|pid:none) Drosophila melanogaster RE36839 fu... 39 0.67
AJ853858_5(AJ853858|pid:none) Carnation etched ring virus, compl... 39 0.67
AY959231_1(AY959231|pid:none) Pinus radiata clone 2 ty3/gypsy-li... 39 0.67
AY655744_2(AY655744|pid:none) Simian immunodeficiency virus stra... 39 0.67
AM451932_1(AM451932|pid:none) Vitis vinifera contig VV78X066820.... 39 0.67
AL844504_151(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.88
AY493509_3(AY493509|pid:none) Banana streak GF virus, complete g... 38 0.88
AL929352_69(AL929352|pid:none) Plasmodium falciparum strain 3D7,... 38 0.88
AJ006557_1(AJ006557|pid:none) Anopheles funestus Afun1 gypsy-lik... 38 0.88
AC121241_22(AC121241|pid:none) Medicago truncatula clone mth2-4n... 38 0.88
CR382131_591(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 38 0.88
AJ746250_2(AJ746250|pid:none) Yarrowia lipolytica retrotransposo... 38 0.88
FJ493469_5(FJ493469|pid:none) Rudbeckia flower distortion virus ... 38 1.1
M19427_2(M19427|pid:none) Human spumaretrovirus gag and pol gene... 38 1.1
EU554423_5(EU554423|pid:none) Lamium leaf distortion associated ... 38 1.1
DQ879936_1(DQ879936|pid:none) HIV-1 isolate 1182.12-2002-2003061... 38 1.1
AM182197_2(AM182197|pid:none) Simian immunodeficiency virus pcom... 38 1.1
DQ879447_1(DQ879447|pid:none) HIV-1 isolate 1182.12-1374-2003062... 38 1.1
AF251987_1(AF251987|pid:none) HIV-1 HAART patient isolate 186 fr... 38 1.1
AP008213_1128(AP008213|pid:none) Oryza sativa (japonica cultivar... 38 1.1
EU019768_1(EU019768|pid:none) HIV-1 isolate 3032a from Italy pol... 38 1.1
AF033816_2(AF033816|pid:none) Human spumaretrovirus, complete ge... 38 1.1
AM441412_1(AM441412|pid:none) Vitis vinifera contig VV78X147599.... 38 1.1
AY227352_3(AY227352|pid:none) Chlamydomonas reinhardtii retrotra... 38 1.1
AC133005_18(AC133005|pid:none) Oryza sativa (japonica cultivar-g... 38 1.1
CP001287_3305(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 38 1.1
AM910994_228(AM910994|pid:none) Plasmodium knowlesi strain H chr... 38 1.1
AE014188_288(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.5
AM477550_1(AM477550|pid:none) Vitis vinifera contig VV78X249557.... 37 1.5
AM443905_1(AM443905|pid:none) Vitis vinifera contig VV78X013035.... 37 1.5
AF188115_2(AF188115|pid:none) Simian immunodeficiency virus Gag ... 37 1.5
AC134046_23(AC134046|pid:none) Oryza sativa (japonica cultivar-g... 37 1.5
AC138012_23(AC138012|pid:none) Medicago truncatula clone mth2-9b... 37 1.5
AF052723_1(AF052723|pid:none) Feline leukemia virus strain Ricka... 37 1.5
AY534732_1(AY534732|pid:none) Horseradish latent virus polyprote... 37 1.5
AC151743_25(AC151743|pid:none) Medicago truncatula clone mth2-25... 37 1.5
FM992693_401(FM992693|pid:none) Candida dubliniensis CD36 chromo... 37 1.5
EU607574_1(EU607574|pid:none) HIV-1 isolate 02-123807 pol protei... 37 1.5
AE016796_140(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 37 1.5
AM455243_1(AM455243|pid:none) Vitis vinifera contig VV78X273128.... 37 1.5
AL844509_596(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.9
AC114263_8(AC114263|pid:none) Dictyostelium discoideum chromosom... 37 1.9
AY801249_1(AY801249|pid:none) HIV-1 isolate CA38391 from USA rev... 37 2.0
AF201902_2(AF201902|pid:none) Equine foamy virus, complete genome. 37 2.0
(Q8I7P9) RecName: Full=Retrovirus-related Pol polyprotein from t... 37 2.0
AF076475_2(AF076475|pid:none) HIV-1 isolate VI1126 from Democrat... 37 2.0
AC120533_15(AC120533|pid:none) Oryza sativa (japonica cultivar-g... 37 2.0
AC109602_26(AC109602|pid:none) Oryza sativa chromosome 3 BAC OSJ... 37 2.0
FM165200_2(FM165200|pid:none) Simian immunodeficiency virus - ol... 37 2.0
AL663005_17(AL663005|pid:none) Oryza sativa genomic DNA, chromos... 37 2.0
(P05400) RecName: Full=Enzymatic polyprotein; Includes: RecNam... 37 2.0
AJ966994_1(AJ966994|pid:none) Lotus corniculatus var. japonicus ... 37 2.0
AY773078_1(AY773078|pid:none) Carassius auratus gibelio Vasa (va... 37 2.0
AF466646_9(AF466646|pid:none) Zea mays putative transposase (Z19... 37 2.0
AC084818_13(AC084818|pid:none) Oryza sativa (japonica cultivar-g... 37 2.0
AY855446_1(AY855446|pid:none) HIV-1 isolate 1725-885A from Italy... 37 2.0
AL606592_7(AL606592|pid:none) Oryza sativa genomic DNA, chromoso... 37 2.0
AM483609_1(AM483609|pid:none) Vitis vinifera contig VV78X106163.... 37 2.6
AY156775_1(AY156775|pid:none) HIV-1 clone LA07.RT from USA rever... 37 2.6
EU248540_1(EU248540|pid:none) HIV-1 isolate KYXpvTXwcaNwFbg from... 37 2.6
DQ878584_1(DQ878584|pid:none) HIV-1 isolate 1182.48-5074-2003080... 37 2.6
DQ880307_1(DQ880307|pid:none) HIV-1 isolate 1182.12-3078-2003040... 37 2.6
AJ608931_3(AJ608931|pid:none) Cacao swollen shoot virus ORF1, OR... 37 2.6
AL606628_4(AL606628|pid:none) Oryza sativa genomic DNA, chromoso... 37 2.6
EU615777_1(EU615777|pid:none) HIV-1 isolate 03-129502 truncated ... 37 2.6
AM481999_2(AM481999|pid:none) Vitis vinifera contig VV78X241394.... 37 2.6
AP006852_226(AP006852|pid:none) Candida albicans genomic DNA, ch... 37 2.6
U14635_1(U14635|pid:none) Caenorhabditis elegans cosmid C27H5, c... 37 2.6
T01781(T01781)probable pol protein pseudogene - human (fragment) 37 2.6
EF374992_1(EF374992|pid:none) HIV-1 clone 31.9.2 from USA pol pr... 37 2.6
DQ878971_1(DQ878971|pid:none) HIV-1 isolate 1182.48-7133-2003072... 37 2.6
AY000319_1(AY000319|pid:none) HIV-1 isolate 106D07 from USA pol ... 37 2.6
T15667(T15667)hypothetical protein C27H5.3 - Caenorhabditis eleg... 37 2.6
AF514233_1(AF514233|pid:none) HIV-1 isolate 5541-060401 from USA... 37 2.6
FJ800431_1(FJ800431|pid:none) HIV-1 isolate HN-TR59 from Hondura... 37 2.6
EF374989_1(EF374989|pid:none) HIV-1 clone 31.8.4 from USA pol pr... 37 2.6
EU693676_1(EU693676|pid:none) HIV-1 isolate 148 from USA pol pro... 37 2.6
EF374990_1(EF374990|pid:none) HIV-1 clone 31.8.5 from USA pol pr... 37 2.6
AM481999_1(AM481999|pid:none) Vitis vinifera contig VV78X241394.... 37 2.6
AY050234_1(AY050234|pid:none) Drosophila melanogaster SD02026 fu... 37 2.6
AJ609020_3(AJ609020|pid:none) Cacao swollen shoot virus complete... 37 2.6
AF357836_3(AF357836|pid:none) Taro bacilliform virus complete ge... 37 2.6
AM430592_3(AM430592|pid:none) Vitis vinifera contig VV78X013968.... 36 3.3
AB231328_1(AB231328|pid:none) Plasmodium berghei lsp2 gene for l... 36 3.3
BA000026_399(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 36 3.3
EU609327_1(EU609327|pid:none) HIV-1 isolate 02-133767 pol protei... 36 3.3
S52564(S52564)hypothetical protein 2 (clone Db314) - fruit fly (... 36 3.3
DQ444471_1(DQ444471|pid:none) Nosema bombycis retrotransposon Nb... 36 3.3
AC149290_9(AC149290|pid:none) Solanum demissum chromosome 5 clon... 36 3.3
AY031822_1(AY031822|pid:none) HIV-1 isolate NC5265-1999 from USA... 36 3.3
AM425716_1(AM425716|pid:none) Vitis vinifera contig VV78X226971.... 36 3.3
AM441582_2(AM441582|pid:none) Vitis vinifera contig VV78X073836.... 36 3.3
AC161107_16(AC161107|pid:none) Medicago truncatula clone mth2-19... 36 3.3
S75260_3(S75260|pid:none) pol {Osvaldo, retrotransposon} [Drosop... 36 3.3
(Q06975) RecName: Full=H/ACA ribonucleoprotein complex subunit 1... 36 3.3
AF517283_1(AF517283|pid:none) HIV-1 from Italy patient 31, on-th... 36 3.3
L14546_3(L14546|pid:none) Cacao swollen shoot virus polyprotein ... 36 3.3
AY340700_2(AY340700|pid:none) Simian immunodeficiency virus SIVm... 36 3.3
AY683037_1(AY683037|pid:none) Vigna radiata clone VRG-56 gypsy-l... 36 3.3
AM910983_48(AM910983|pid:none) Plasmodium knowlesi strain H chro... 36 3.3
EF623966_1(EF623966|pid:none) Malus x domestica isolate GyRTFJ-2... 36 3.3
AJ534983_3(AJ534983|pid:none) Cacao swollen shoot virus ORF1, OR... 36 3.3
AB028236_3(AB028236|pid:none) Tricholoma matsutake LTR retroelem... 36 3.3
AM479826_1(AM479826|pid:none) Vitis vinifera contig VV78X194893.... 36 3.3
AM471288_2(AM471288|pid:none) Vitis vinifera contig VV78X214009.... 36 3.3
EF374988_1(EF374988|pid:none) HIV-1 clone 31.8.3 from USA pol pr... 36 3.3
AE014188_72(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 29 3.8
BT045428_1(BT045428|pid:none) Salmo salar clone ssal-rgf-521-095... 36 4.3
FM992695_36(FM992695|pid:none) Candida dubliniensis CD36 chromos... 36 4.4
(P03371) RecName: Full=Pol polyprotein; Contains: RecName: Ful... 36 4.4
AM461285_1(AM461285|pid:none) Vitis vinifera contig VV79X002621.... 36 4.4
AM445773_2(AM445773|pid:none) Vitis vinifera contig VV78X064450.... 36 4.4
AM445081_1(AM445081|pid:none) Vitis vinifera contig VV78X175576.... 36 4.4
AJ578157_1(AJ578157|pid:none) Human immunodeficiency virus 1 par... 36 4.4
DQ991636_1(DQ991636|pid:none) HIV-1 isolate A2830_C2 from Mali p... 36 4.4
AC084218_11(AC084218|pid:none) Oryza sativa (japonica cultivar-g... 36 4.4
AC148360_22(AC148360|pid:none) Medicago truncatula clone mth2-27... 36 4.4
AM472298_1(AM472298|pid:none) Vitis vinifera contig VV78X182697.... 36 4.4
AM465353_1(AM465353|pid:none) Vitis vinifera contig VV78X008284.... 36 4.4
AY035395_1(AY035395|pid:none) Saccharomyces exiguus retrotranspo... 36 4.4
AY001587_1(AY001587|pid:none) HIV-1 isolate 059G06 from USA pol ... 36 4.4
(P22382) RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160G... 36 4.4
M32815_1(M32815|pid:none) Cauliflower mosaic virus reverse trans... 36 4.4
EU607690_1(EU607690|pid:none) HIV-1 isolate 02-124531 pol protei... 36 4.4
CR380953_301(CR380953|pid:none) Candida glabrata strain CBS138 c... 36 4.4
AY673967_1(AY673967|pid:none) Candida glabrata transposon LTR-re... 36 4.4
AY878195_1(AY878195|pid:none) Feline immunodeficiency virus isol... 36 4.4
AY032412_1(AY032412|pid:none) HIV-1 isolate NC6461-2000 from USA... 36 4.4
M27470_2(M27470|pid:none) Simian immunodeficiency virus, complet... 36 4.4
AM488359_1(AM488359|pid:none) Vitis vinifera contig VV78X124634.... 36 4.4
AY802343_1(AY802343|pid:none) HIV-1 isolate CA42758 from USA rev... 36 4.4
AF139170_1(AF139170|pid:none) Human T-cell lymphotropic virus ty... 36 4.4
AM453133_1(AM453133|pid:none) Vitis vinifera contig VV79X000398.... 36 4.4
EU608237_1(EU608237|pid:none) HIV-1 isolate 02-127848 pol protei... 36 4.4
AF301332_1(AF301332|pid:none) HIV-1 clone AA0299 from USA revers... 36 4.4
AY032051_1(AY032051|pid:none) HIV-1 isolate NC5541-1999 from USA... 36 4.4
AJ439555_2(AJ439555|pid:none) Saccharomyces exiguus LTR-retrotra... 36 4.4
DQ113147_1(DQ113147|pid:none) HIV-1 isolate CB_346 from Cuba pol... 36 4.4
EF374994_1(EF374994|pid:none) HIV-1 clone 31.9.4 from USA pol pr... 36 4.4
EU609402_1(EU609402|pid:none) HIV-1 isolate 02-134254 pol protei... 36 4.4
AM451749_7(AM451749|pid:none) Vitis vinifera contig VV78X233142.... 36 4.4
AY802129_1(AY802129|pid:none) HIV-1 isolate CA24124 from USA rev... 36 4.4
AL844509_46(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 35 5.7
(Q54LK8) RecName: Full=Uncharacterized protein DDB_G0286591; 35 5.7
AC115606_2(AC115606|pid:none) Dictyostelium discoideum chromosom... 35 5.7
Y14497_1(Y14497|pid:none) HIV-1 pol gene, isolate BCF02, partial. 35 5.7
AF514126_1(AF514126|pid:none) HIV-1 isolate 1850-050399 from USA... 35 5.7
L77962_1(L77962|pid:none) Bamboo mosaic virus, complete genome. 35 5.7
EF455610_2(EF455610|pid:none) Feline immunodeficiency virus isol... 35 5.7
AF119819_2(AF119819|pid:none) HIV-1 strain GR84 complete genome. 35 5.7
Z99321_1(Z99321|pid:none) Human immunodeficiency virus 1 isolate... 35 5.7
AY801247_1(AY801247|pid:none) HIV-1 isolate CA34337 from USA rev... 35 5.7
EU614193_1(EU614193|pid:none) HIV-1 isolate 03-121399 pol protei... 35 5.7
AY900573_2(AY900573|pid:none) HIV-1 isolate CB418 from Cuba gag ... 35 5.7
DQ308419_1(DQ308419|pid:none) Feline immunodeficiency virus isol... 35 5.7
DQ308418_1(DQ308418|pid:none) Feline immunodeficiency virus isol... 35 5.7
EF449337_1(EF449337|pid:none) HIV-1 isolate 104GR86723 from Gree... 35 5.7
AY653598_1(AY653598|pid:none) HIV-1 isolate 2562USSP2 from USA p... 35 5.7
EU610703_1(EU610703|pid:none) HIV-1 isolate 03-103077 pol protei... 35 5.7
AM451346_1(AM451346|pid:none) Vitis vinifera contig VV78X003090.... 35 5.7
(Q9TYK1) RecName: Full=Probable H/ACA ribonucleoprotein complex ... 35 5.7
AC141111_40(AC141111|pid:none) Medicago truncatula clone mth2-20... 35 5.7
AF088114_1(AF088114|pid:none) HIV-1 isolate PCCRT37 from USA rev... 35 5.7
AY802508_1(AY802508|pid:none) HIV-1 isolate CA38979 from USA rev... 35 5.7
AF347459_1(AF347459|pid:none) HIV-1 isolate 991615 from Germany ... 35 5.7
EU008049_1(EU008049|pid:none) HIV-1 clone 703 from Italy pol pro... 35 5.7
AY032441_1(AY032441|pid:none) HIV-1 isolate NC6490-2000 from USA... 35 5.7
AM910992_184(AM910992|pid:none) Plasmodium knowlesi strain H chr... 35 5.7
DQ380962_1(DQ380962|pid:none) Orobanche cernua var. desertorum c... 35 5.7
AM454788_1(AM454788|pid:none) Vitis vinifera contig VV78X045593.... 35 5.7
EU553137_1(EU553137|pid:none) HIV-1 strain 05RO3447 from Romania... 35 5.7
AM439905_1(AM439905|pid:none) Vitis vinifera contig VV78X022197.... 35 5.7
EU607189_1(EU607189|pid:none) HIV-1 isolate 02-121658 pol protei... 35 5.7
AY449462_4(AY449462|pid:none) Oikopleura dioica clone BACOIKO006... 35 5.7
EU518012_1(EU518012|pid:none) HIV-1 isolate BEC125 from USA reve... 35 5.7
AE014187_149(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 5.7
EU615234_1(EU615234|pid:none) HIV-1 isolate 03-126707 pol protei... 35 5.7
AF427197_1(AF427197|pid:none) HIV-1 isolate cfi53 from USA pol p... 35 5.7
DQ380897_1(DQ380897|pid:none) Orobanche cernua var. cumana clone... 35 5.7
AF423123_1(AF423123|pid:none) HIV-1 isolate 85 from USA pol poly... 35 5.7
D26017_1(D26017|pid:none) Bamboo mosaic virus genomic RNA, compl... 35 5.7
AY801993_1(AY801993|pid:none) HIV-1 isolate CA42658 from USA rev... 35 5.7
AM476300_1(AM476300|pid:none) Vitis vinifera contig VV78X013271.... 35 5.7
AM486004_1(AM486004|pid:none) Vitis vinifera contig VV78X181222.... 35 5.7
AM485448_3(AM485448|pid:none) Vitis vinifera contig VV78X205419.... 35 7.4
AE014185_175(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 35 7.4
EU177915_1(EU177915|pid:none) HIV-1 isolate GH_041 from Ghana po... 35 7.4
EU910808_1(EU910808|pid:none) HIV-1 isolate BEB531p from Poland ... 35 7.4
AM487977_3(AM487977|pid:none) Vitis vinifera contig VV78X047347.... 35 7.4
AY683028_1(AY683028|pid:none) Vigna radiata clone VRG-44 gypsy-l... 35 7.4
AM487977_4(AM487977|pid:none) Vitis vinifera contig VV78X047347.... 35 7.4
AJ564745_2(AJ564745|pid:none) Feline foamy virus complete provir... 35 7.4
AB033250_1(AB033250|pid:none) Oryza sativa Japonica Group gypsy-... 35 7.4
M10376_7(M10376|pid:none) Cauliflower mosaic virus (altered viru... 35 7.4
AY031012_1(AY031012|pid:none) HIV-1 isolate NC4016-1999 from USA... 35 7.4
AM431009_1(AM431009|pid:none) Vitis vinifera contig VV78X186079.... 35 7.4
EU613241_1(EU613241|pid:none) HIV-1 isolate 03-116844 pol protei... 35 7.4
EU609855_1(EU609855|pid:none) HIV-1 isolate 02-136834 pol protei... 35 7.4
AM910987_250(AM910987|pid:none) Plasmodium knowlesi strain H chr... 35 7.4
AY683033_1(AY683033|pid:none) Vigna radiata clone VRG-50 gypsy-l... 35 7.4
EU609610_1(EU609610|pid:none) HIV-1 isolate 02-135304 pol protei... 35 7.4
EF374531_1(EF374531|pid:none) HIV-1 clone 7.5.1 from USA pol pro... 35 7.4
AM910994_309(AM910994|pid:none) Plasmodium knowlesi strain H chr... 35 7.4
AY003221_1(AY003221|pid:none) HIV-1 isolate 003H03 from USA pol ... 35 7.4
AC140850_20(AC140850|pid:none) Medicago truncatula clone mth2-11... 35 7.4
FM955727_1(FM955727|pid:none) HIV-1 06TG.HT127 partial gag-pol g... 35 7.4
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 35 7.4
AY031534_1(AY031534|pid:none) HIV-1 isolate NC4894-1999 from USA... 35 7.4
EF076692_1(EF076692|pid:none) Human T-lymphotropic virus 1 cell-... 35 7.4
DQ328547_1(DQ328547|pid:none) HIV-1 isolate 02AZ057 from Azerbai... 35 7.4
AY169815_2(AY169815|pid:none) HIV-1 isolate 99CMU4122 from Camer... 35 7.4
EU614830_1(EU614830|pid:none) HIV-1 isolate 03-124654 pol protei... 35 7.4
AY683016_1(AY683016|pid:none) Vigna radiata clone VRG-20 gypsy-l... 35 7.4
AY801663_1(AY801663|pid:none) HIV-1 isolate CA38443 from USA rev... 35 7.4
AY618998_2(AY618998|pid:none) HIV-1 clone pCMO2.3 from Cameroon,... 35 7.4
DQ372323_1(DQ372323|pid:none) HIV-1 isolate WC28P-0100-8 from US... 35 7.4
EU608041_1(EU608041|pid:none) HIV-1 isolate 02-126684 pol protei... 35 7.4
AF016316_2(AF016316|pid:none) Equine infectious anemia virus clo... 35 7.4
EF076695_1(EF076695|pid:none) Human T-lymphotropic virus 1 cell-... 35 7.4
AC084766_13(AC084766|pid:none) Oryza sativa chromosome 3 BAC OSJ... 35 7.4
CR855110_3(CR855110|pid:none) Oryza sativa genomic DNA, chromoso... 35 7.4
AM452536_1(AM452536|pid:none) Vitis vinifera contig VV78X013854.... 35 7.4
DQ372316_1(DQ372316|pid:none) HIV-1 isolate WC28P-0100-1 from US... 35 7.4
AY000218_1(AY000218|pid:none) HIV-1 isolate 000A12a from USA pol... 35 7.4
AY003222_1(AY003222|pid:none) HIV-1 isolate 003H05 from USA pol ... 35 7.4
AY881975_1(AY881975|pid:none) Verticillium dahliae putative pol ... 35 7.4
AJ564746_2(AJ564746|pid:none) Feline foamy virus complete provir... 35 7.4
EU607296_1(EU607296|pid:none) HIV-1 isolate 02-122124 pol protei... 35 7.4
EU606638_1(EU606638|pid:none) HIV-1 isolate 02-118252 pol protei... 35 7.4
AM477762_1(AM477762|pid:none) Vitis vinifera contig VV78X040501.... 35 7.4
DQ880712_1(DQ880712|pid:none) HIV-1 isolate 1182.48-9088-2003082... 35 7.4
AE010299_706(AE010299|pid:none) Methanosarcina acetivorans str. ... 35 7.4
AC090870_4(AC090870|pid:none) Oryza sativa chromosome 10 BAC OSJ... 35 7.4
AM451829_1(AM451829|pid:none) Vitis vinifera contig VV78X165873.... 35 7.4
AY003224_1(AY003224|pid:none) HIV-1 isolate 018E03 from USA pol ... 35 7.4
EU290644_1(EU290644|pid:none) HIV-1 isolate KRC4372_05_07_25 fro... 35 7.4
EU606755_1(EU606755|pid:none) HIV-1 isolate 02-118782 pol protei... 35 7.4
AF456726_1(AF456726|pid:none) HIV-1 isolate AR22600 from Argenti... 35 7.4
AC141111_28(AC141111|pid:none) Medicago truncatula clone mth2-20... 35 7.4
EU613387_1(EU613387|pid:none) HIV-1 isolate 03-117497 pol protei... 35 7.4
(Q5UP44) RecName: Full=Uncharacterized protein L645; &AY653733_... 35 7.4
AM468044_2(AM468044|pid:none) Vitis vinifera contig VV78X105073.... 35 7.4
EU608605_1(EU608605|pid:none) HIV-1 isolate 02-130020 pol protei... 35 7.4
DQ113341_1(DQ113341|pid:none) HIV-1 isolate CB_613 from Cuba pol... 35 7.4
AF349366_1(AF349366|pid:none) HIV-1 isolate VRP116930 from USA p... 35 7.4
AY801248_1(AY801248|pid:none) HIV-1 isolate CA48078 from USA rev... 35 7.4
FJ594182_1(FJ594182|pid:none) HIV-1 isolate BRGO3150 from Brazil... 35 7.4
AF028231_3(AF028231|pid:none) Equine infectious anemia virus clo... 35 7.4
EU612616_1(EU612616|pid:none) HIV-1 isolate 03-113748 pol protei... 35 7.4
BT023955_1(BT023955|pid:none) Drosophila melanogaster AT31092 fu... 35 9.7
AE014296_3434(AE014296|pid:none) Drosophila melanogaster chromos... 35 9.7
AK221299_1(AK221299|pid:none) Arabidopsis thaliana mRNA for pseu... 35 9.7
AY061161_1(AY061161|pid:none) Drosophila melanogaster LD12812 fu... 35 9.7
AF327877_2(AF327877|pid:none) Equine infectious anemia virus str... 35 9.7
AY736475_1(AY736475|pid:none) Schistosoma mansoni clone FuPro420... 35 9.7
AY000195_1(AY000195|pid:none) HIV-1 isolate 000A07c from USA pol... 35 9.7
AY000209_1(AY000209|pid:none) HIV-1 isolate 106B06 from USA pol ... 35 9.7
AY030791_1(AY030791|pid:none) HIV-1 isolate NC2083-1998 from USA... 35 9.7
AC147774_16(AC147774|pid:none) Medicago truncatula chromosome 2 ... 35 9.7
AM457000_1(AM457000|pid:none) Vitis vinifera contig VV78X185715.... 35 9.7
DQ879469_1(DQ879469|pid:none) HIV-1 isolate 1182.12-1405-2003050... 35 9.7
AY000194_1(AY000194|pid:none) HIV-1 isolate 000A05a from USA pol... 35 9.7
AF315780_1(AF315780|pid:none) HIV-1 isolate 37 from Greece pol p... 35 9.7
EU614198_1(EU614198|pid:none) HIV-1 isolate 03-121446 truncated ... 35 9.7
AB430329_1(AB430329|pid:none) Lotus japonicus Ty3-gypsy LORE2B7 ... 35 9.7
AY000219_1(AY000219|pid:none) HIV-1 isolate 106B07 from USA pol ... 35 9.7
AY634223_2(AY634223|pid:none) Oikopleura dioica transposon LTR r... 35 9.7
EU312854_1(EU312854|pid:none) HIV-1 isolate 03HN_TX125 from Hond... 35 9.7
AY000217_1(AY000217|pid:none) HIV-1 isolate 106B02 from USA pol ... 35 9.7
AJ286991_1(AJ286991|pid:none) Human immunodeficiency virus type ... 35 9.7
AY000201_1(AY000201|pid:none) HIV-1 isolate 026B06 from USA pol ... 35 9.7
EU612222_1(EU612222|pid:none) HIV-1 isolate 03-111149 pol protei... 35 9.7
AY000292_1(AY000292|pid:none) HIV-1 isolate 015A09 from USA pol ... 35 9.7
AF264028_2(AF264028|pid:none) Colletotrichum gloeosporioides aut... 35 9.7
DQ237902_1(DQ237902|pid:none) Spleen necrosis virus polymerase (... 35 9.7
AY000198_1(AY000198|pid:none) HIV-1 isolate 000A12 from USA pol ... 35 9.7
AF346784_1(AF346784|pid:none) HIV-1 isolate 69-1 from Australia ... 35 9.7
AY000210_1(AY000210|pid:none) HIV-1 isolate 106B08 from USA pol ... 35 9.7
AB430321_1(AB430321|pid:none) Lotus japonicus Ty3-gypsy LORE2B r... 35 9.7
AM464301_1(AM464301|pid:none) Vitis vinifera contig VV78X260019.... 35 9.7
EU178005_1(EU178005|pid:none) HIV-1 isolate GH_166 from Ghana po... 35 9.7
AY000206_1(AY000206|pid:none) HIV-1 isolate 026B08 from USA pol ... 35 9.7
>C24785(C24785)hypothetical protein 668 - slime mold (Dictyostelium
discoideum) transposon DIRS-1 (fragment)
Length = 668
Score = 346 bits (887), Expect = 2e-93
Identities = 165/167 (98%), Positives = 165/167 (98%)
Frame = +1
Query: 580 KQVWKELGLPNFCQEVVNGLKVHLLPNFKPMPNPIPISIPEGPKSDCITKEVQDLLLDDA 759
KQVWKELGLPNFCQEVVNGLKVHLLPNFKPM NPIPISIPEGPKSDCITKEVQDLLLDDA
Sbjct: 31 KQVWKELGLPNFCQEVVNGLKVHLLPNFKPMLNPIPISIPEGPKSDCITKEVQDLLLDDA 90
Query: 760 IEQVLPNRYSKRVFYSNVFTVPKPGTNLHRPVLDLKRLNTYINNQSFKMEGIKNLPSMVK 939
IEQVLPN YSKRVFYSNVFTVPKPGTNLHRPVLDLKRLNTYINNQSFKMEGIKNLPSMVK
Sbjct: 91 IEQVLPNHYSKRVFYSNVFTVPKPGTNLHRPVLDLKRLNTYINNQSFKMEGIKNLPSMVK 150
Query: 940 QGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLST 1080
QGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLST
Sbjct: 151 QGYYMVKLDIKKAYLHVLVDPQYRDLFRFVWKGSHYRWKTMPFGLST 197
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,031,410,258
Number of extensions: 40034675
Number of successful extensions: 133830
Number of sequences better than 10.0: 524
Number of HSP's gapped: 127256
Number of HSP's successfully gapped: 605
Length of query: 513
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 380
Effective length of database: 620,718,517
Effective search space: 235873036460
Effective search space used: 235873036460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
1 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
2 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |