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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01835-1
Contig ID Contig-U01835-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Contig-U01835-1Q.Seq.d
ATTTTAAATCAATAATTATCATAAAAATAAAATATTTATATTCTTATAAA
TAATAAATTTACTTTTTTTTTTTTAAGTTAGAAGTAGTAGTAATAGTAGT
AGTAATAATATTAATAATAATAATAATAATAACAATAATAATAATATACA
TCAGTTATCATCATCTAGGACAATGATAGATCATCATAATAGTGATCCTA
CTTCATCTTCATCACCAACCAATGAAAGTCAAATTCATCATTTTTCAAAT
TCAAATTATAATTATAATTATGATGATGTTGATGACTCGACAATAAATTC
AAATAGTACAAATAATAATAATAAAAATCGCAATATACAAAATAATAATA
ACCAAAATATTTCAAATAATCGTGATAATAATAATAATAATATAAATTCA
AATTTAAATAATCAAACAAATTTAATAAATTATAATGATGATGAAGATTA
TGATGAAGATTATGAAAGAGAAATTGAAGATGATGAAGAATATGAAGAGA
TCGGAGATGAAGAGAGTAGTAGTGGAATTGGTGGTGATTCAGAATTTAAT
GATTCTTTGAATGGCTCAAAGGCTGGTAGTAGAAATAGAGAGATTTGGAT
CAATCCAAATATTGAATTAATGTTAAAGATTGCACTATCCACTACA
Gap no gap
Contig length 646
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U01835
List of clone(s) 

est1=SSI452F,1,647
Translated Amino Acid sequence 
f*innyhknkififl*iinllfff*VRSSSNSSSNNINNNNNNNNNNNIHQLSSSRTMID
HHNSDPTSSSSPTNESQIHHFSNSNYNYNYDDVDDSTINSNSTNNNNKNRNIQNNNNQNI
SNNRDNNNNNINSNLNNQTNLINYNDDEDYDEDYEREIEDDEEYEEIGDEESSSGIGGDS
EFNDSLNGSKAGSRNREIWINPNIELMLKIALSTT
Translated Amino Acid sequence (All Frames) 
Frame A:
ilnq*ls*k*niyilinnkftfffls*k********y*******q***ytsviii*dndr
ss***syfifitnq*ksnssffkfkl*l*l**c**ldnkfk*yk****ksqytk***pky
fk*s******ykfkfk*snkfnkl****rl**rl*krn*r**ri*rdrr*re**wnww*f
ri**ffewlkgw**k*rdldqsky*invkdctihy


Frame B:
f*innyhknkififl*iinllfff*VRSSSNSSSNNINNNNNNNNNNNIHQLSSSRTMID
HHNSDPTSSSSPTNESQIHHFSNSNYNYNYDDVDDSTINSNSTNNNNKNRNIQNNNNQNI
SNNRDNNNNNINSNLNNQTNLINYNDDEDYDEDYEREIEDDEEYEEIGDEESSSGIGGDS
EFNDSLNGSKAGSRNREIWINPNIELMLKIALSTT


Frame C:
fksiiiikikylysyk**iyffffklevvvivvviiliiiiiitiiiiyisyhhlgq**i
iiivillhlhhqpmkvkfiifqiqiiiiimmmlmtrq*iqivqiiiikiaiykiiitkif
qiiviiiiii*iqi*iikqi**iimmmkimmkimkeklkmmknmkrsemkrvvvelvviq
nlmil*maqrlvveierfgsiqiln*c*rlhypl
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01835-1 (Contig-U01835-1Q)
/CSM_Contig/Contig-U01835-1Q.Seq.d
         (646 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Conti...   299  3e-81
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11465-1 (Contig-U11465-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11420-1 (Contig-U11420-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11248-1 (Contig-U11248-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U10719-1 (Contig-U10719-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U10335-1 (Contig-U10335-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Contig-U01835-1Q.Seq.d
          Length = 646

 Score =  299 bits (151), Expect = 3e-81
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 149 catcagttatcatcatctaggacaatgatagatcatcataatagtgatcctacttcatct 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 catcagttatcatcatctaggacaatgatagatcatcataatagtgatcctacttcatct 208

                                                                       
Query: 209 tcatcaccaaccaatgaaagtcaaattcatcatttttcaaattcaaattataattataat 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcatcaccaaccaatgaaagtcaaattcatcatttttcaaattcaaattataattataat 268

                                          
Query: 269 tatgatgatgttgatgactcgacaataaatt 299
           |||||||||||||||||||||||||||||||
Sbjct: 269 tatgatgatgttgatgactcgacaataaatt 299


 Score =  258 bits (130), Expect = 9e-69
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 517 tagtagtggaattggtggtgattcagaatttaatgattctttgaatggctcaaaggctgg 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tagtagtggaattggtggtgattcagaatttaatgattctttgaatggctcaaaggctgg 576

                                                                       
Query: 577 tagtagaaatagagagatttggatcaatccaaatattgaattaatgttaaagattgcact 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tagtagaaatagagagatttggatcaatccaaatattgaattaatgttaaagattgcact 636

                     
Query: 637 atccactaca 646
           ||||||||||
Sbjct: 637 atccactaca 646


 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 75  aagttagaagtagtagtaatagtagtag 102
           ||||||||||||||||||||||||||||
Sbjct: 75  aagttagaagtagtagtaatagtagtag 102


 Score = 32.2 bits (16), Expect = 0.98
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 254 aattataattataatt 269
           ||||||||||||||||
Sbjct: 269 aattataattataatt 254


>Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Contig-U13992-1Q.Seq.d
          Length = 1205

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  agtagtagtaatagtagtag 102
           ||||||||||||||||||||
Sbjct: 284 agtagtagtaatagtagtag 303


>Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Contig-U09201-1Q.Seq.d
          Length = 602

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 79  tagaagtagtagtaatagtagtag 102
           |||||||||||||| |||||||||
Sbjct: 231 tagaagtagtagtagtagtagtag 208


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,234
Number of Sequences: 8361
Number of extensions: 10234
Number of successful extensions: 1761
Number of sequences better than 10.0: 304
length of query: 646
length of database: 7,895,291
effective HSP length: 16
effective length of query: 630
effective length of database: 7,761,515
effective search space: 4889754450
effective search space used: 4889754450
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 8
Homology vs DNA 
Query= Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Contig-U01835-1Q.Seq.d
         (646 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073824) Dictyostelium discoideum slug cDNA, clone SSI452.      182   3e-51  2
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ...    40   8e-04  5
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ...    40   8e-04  5
(AL844509) Plasmodium falciparum chromosome 13.                    56   0.002  1
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    56   0.002  1
(BI815047) PfESToaa13f02.y1 Plasmodium falciparum 3D7 asexua...    56   0.002  1
(AC180233) Strongylocentrotus purpuratus clone R3-36E7, WORK...    46   0.004  3
(AC175887) Strongylocentrotus purpuratus clone R3-15B18, WOR...    42   0.014  3
(AC149972) Strongylocentrotus purpuratus clone R3-32A16, WOR...    46   0.014  3
(AC202513) Medicago truncatula clone mth2-60a13, complete se...    52   0.027  1
(AC137832) Medicago truncatula chromosome 6 clone mth2-22i17...    52   0.027  1
(AC176790) Strongylocentrotus purpuratus clone R3-3106K14, W...    44   0.034  3
(AC175843) Strongylocentrotus purpuratus clone R3-15M1, WORK...    44   0.044  3
(AC176841) Strongylocentrotus purpuratus clone R3-3120C6, WO...    42   0.045  3
(AC201285) Strongylocentrotus purpuratus clone R3-16F21, WOR...    44   0.064  2
(AC175958) Strongylocentrotus purpuratus clone R3-3035L09, W...    46   0.079  5
(AC178589) Strongylocentrotus purpuratus clone R3-3025F16, W...    48   0.087  5
(AC149985) Strongylocentrotus purpuratus clone R3-32A3, WORK...    50   0.11   1
(AC149982) Strongylocentrotus purpuratus clone R3-32A4, WORK...    50   0.11   1
(AC179422) Strongylocentrotus purpuratus clone R3-62K1, WORK...    50   0.11   1
(AC177159) Strongylocentrotus purpuratus clone R3-4015E22, W...    50   0.11   1
(EK366614) 1095469400542 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.11   1
(EH383542) EST01414 G. natalis leg muscle expression library...    50   0.11   1
(GE547609) CCHS6479.b1_N12.ab1 CCHS Espina Barnadesia spinos...    50   0.11   1
(AC184429) Strongylocentrotus purpuratus clone R3-3089I6, WO...    40   0.12   7
(AC168687) Strongylocentrotus purpuratus clone R3-3014J3, WO...    40   0.14   3
(AC179928) Strongylocentrotus purpuratus clone R3-23H18, WOR...    40   0.17   4
(AC176247) Strongylocentrotus purpuratus clone R3-3062C9, WO...    40   0.20   4
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...    46   0.20   4
(AC119787) Rattus norvegicus clone CH230-206E12, *** SEQUENC...    48   0.24   2
(AC107411) Rattus norvegicus clone CH230-153M22, WORKING DRA...    48   0.24   2
(AC179206) Strongylocentrotus purpuratus clone R3-4019N20, W...    48   0.26   4
(AC184496) Strongylocentrotus purpuratus clone R3-16E22, WOR...    44   0.27   3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   0.27   7
(AC179150) Strongylocentrotus purpuratus clone R3-4012I10, W...    38   0.28   3
(AC178826) Strongylocentrotus purpuratus clone R3-25I18, WOR...    40   0.29   4
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   0.30   4
(AC157832) Strongylocentrotus purpuratus clone R3-3011B2, WO...    48   0.33   5
(CU062484) Zebrafish DNA sequence from clone CH73-329L6 in l...    48   0.42   1
(CR352283) Zebrafish DNA sequence from clone CH211-105M14 in...    48   0.42   1
(BX511013) Zebrafish DNA sequence from clone DKEY-221I2 in l...    48   0.42   1
(BX510919) Zebrafish DNA sequence from clone DKEY-164K19 in ...    48   0.42   1
(BX465198) Zebrafish DNA sequence from clone DKEYP-84E12 in ...    48   0.42   1
(AC156639) Mus musculus BAC clone RP23-301M11 from chromosom...    48   0.42   1
(AC151977) Mus musculus BAC clone RP24-534C19 from chromosom...    48   0.42   1
(AC149989) Strongylocentrotus purpuratus clone R3-60A4, WORK...    48   0.42   1
(AC118977) Rattus norvegicus clone CH230-33N20, WORKING DRAF...    48   0.42   1
(AC109974) Rattus norvegicus clone CH230-278C23, *** SEQUENC...    48   0.42   1
(AC108576) Rattus norvegicus clone CH230-228K24, WORKING DRA...    48   0.42   1
(AC098909) Rattus norvegicus clone CH230-151K7, WORKING DRAF...    48   0.42   1
(CR931999) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.42   1
(AC226825) Medicago truncatula chromosome 2 clone mte1-30g11...    48   0.42   1
(AC220187) Bos taurus clone CH240-365J8, WORKING DRAFT SEQUE...    48   0.42   1
(AC201663) Strongylocentrotus purpuratus clone R3-3081B8, WO...    48   0.42   1
(AC201643) Strongylocentrotus purpuratus clone R3-54F19, WOR...    48   0.42   1
(AC201596) Strongylocentrotus purpuratus clone R3-45E14, WOR...    48   0.42   1
(AC201580) Strongylocentrotus purpuratus clone R3-4011J24, W...    48   0.42   1
(AC201046) Strongylocentrotus purpuratus clone R3-12M21, WOR...    48   0.42   1
(AC184528) Strongylocentrotus purpuratus clone R3-3110F15, W...    48   0.42   1
(AC184473) Strongylocentrotus purpuratus clone R3-1012G8, WO...    48   0.42   1
(AC184454) Strongylocentrotus purpuratus clone R3-3082P6, WO...    48   0.42   1
(AC184354) Strongylocentrotus purpuratus clone R3-57H8, WORK...    48   0.42   1
(AC181638) Strongylocentrotus purpuratus clone R3-1103M24, W...    48   0.42   1
(AC181183) Strongylocentrotus purpuratus clone R3-14O6, WORK...    48   0.42   1
(AC181126) Strongylocentrotus purpuratus clone R3-16J12, WOR...    48   0.42   1
(AC181046) Strongylocentrotus purpuratus clone R3-3050I13, W...    48   0.42   1
(AC180852) Strongylocentrotus purpuratus clone R3-3068H12, W...    48   0.42   1
(AC180809) Strongylocentrotus purpuratus clone R3-3071J15, W...    48   0.42   1
(AC180572) Strongylocentrotus purpuratus clone R3-3095G8, WO...    48   0.42   1
(AC180287) Strongylocentrotus purpuratus clone R3-3121L15, W...    48   0.42   1
(AC180041) Strongylocentrotus purpuratus clone R3-24A22, WOR...    48   0.42   1
(AC180004) Strongylocentrotus purpuratus clone R3-3036M14, W...    48   0.42   1
(AC179941) Strongylocentrotus purpuratus clone R3-3032K10, W...    48   0.42   1
(AC179859) Strongylocentrotus purpuratus clone R3-1007F1, WO...    48   0.42   1
(AC179754) Strongylocentrotus purpuratus clone R3-1018B20, W...    48   0.42   1
(AC179728) Strongylocentrotus purpuratus clone R3-1018N07, W...    48   0.42   1
(AC179685) Strongylocentrotus purpuratus clone R3-1021M20, W...    48   0.42   1
(AC179546) Strongylocentrotus purpuratus clone R3-6M2, WORKI...    48   0.42   1
(AC179507) Strongylocentrotus purpuratus clone R3-64L14, WOR...    48   0.42   1
(AC179378) Strongylocentrotus purpuratus clone R3-1101L22, W...    48   0.42   1
(AC179377) Strongylocentrotus purpuratus clone R3-59O24, WOR...    48   0.42   1
(AC179254) Strongylocentrotus purpuratus clone R3-1106H15, W...    48   0.42   1
(AC179193) Strongylocentrotus purpuratus clone R3-1107F21, W...    48   0.42   1
(AC179135) Strongylocentrotus purpuratus clone R3-4011N4, WO...    48   0.42   1
(AC178769) Strongylocentrotus purpuratus clone R3-19H10, WOR...    48   0.42   1
(AC178708) Strongylocentrotus purpuratus clone R3-12J4, WORK...    48   0.42   1
(AC178693) Strongylocentrotus purpuratus clone R3-12F2, WORK...    48   0.42   1
(AC178625) Strongylocentrotus purpuratus clone R3-3007N5, WO...    48   0.42   1
(AC178521) Strongylocentrotus purpuratus clone R3-3032D12, W...    48   0.42   1
(AC178479) Strongylocentrotus purpuratus clone R3-3039F17, W...    48   0.42   1
(AC178350) Strongylocentrotus purpuratus clone R3-3105J21, W...    48   0.42   1
(AC177990) Strongylocentrotus purpuratus clone R3-3051K9, WO...    48   0.42   1
(AC177954) Strongylocentrotus purpuratus clone R3-3049C16, W...    48   0.42   1
(AC177684) Strongylocentrotus purpuratus clone R3-1013P4, WO...    48   0.42   1
(AC177133) Strongylocentrotus purpuratus clone R3-4014J24, W...    48   0.42   1
(AC177087) Strongylocentrotus purpuratus clone R3-4005A06, W...    48   0.42   1
(AC176985) Strongylocentrotus purpuratus clone R3-1103C04, W...    48   0.42   1
(AC176867) Strongylocentrotus purpuratus clone R3-31D6, WORK...    48   0.42   1
(AC176748) Strongylocentrotus purpuratus clone R3-3097G9, WO...    48   0.42   1
(AC176606) Strongylocentrotus purpuratus clone R3-3079F5, WO...    48   0.42   1
(AC176540) Strongylocentrotus purpuratus clone R3-3075N13, W...    48   0.42   1
(AC176507) Strongylocentrotus purpuratus clone R3-3072N14, W...    48   0.42   1
(AC176417) Strongylocentrotus purpuratus clone R3-3043M04, W...    48   0.42   1
(AC176407) Strongylocentrotus purpuratus clone R3-3044L23, W...    48   0.42   1
(AC176334) Strongylocentrotus purpuratus clone R3-3053L6, WO...    48   0.42   1
(AC176301) Strongylocentrotus purpuratus clone R3-3055L23, W...    48   0.42   1
(AC176295) Strongylocentrotus purpuratus clone R3-3057L2, WO...    48   0.42   1
(AC176252) Strongylocentrotus purpuratus clone R3-3060I22, W...    48   0.42   1
(AC176215) Strongylocentrotus purpuratus clone R3-3063M23, W...    48   0.42   1
(AC176190) Strongylocentrotus purpuratus clone R3-3063P22, W...    48   0.42   1
(AC176157) Strongylocentrotus purpuratus clone R3-2L19, WORK...    48   0.42   1
(AC176150) Strongylocentrotus purpuratus clone R3-3019I21, W...    48   0.42   1
(AC176002) Strongylocentrotus purpuratus clone R3-17M07, WOR...    48   0.42   1
(AC174871) Strongylocentrotus purpuratus clone R3-3112P21, W...    48   0.42   1
(AC174246) Strongylocentrotus purpuratus clone R3-1113L3, **...    48   0.42   1
(AC169937) Bos taurus clone CH240-238E18, WORKING DRAFT SEQU...    48   0.42   1
(AC168717) Strongylocentrotus purpuratus clone R3-3011B2, WO...    48   0.42   1
(AC168683) Strongylocentrotus purpuratus clone R3-3014O11, W...    48   0.42   1
(AZ164486) SP_0076_A1_C01_T7A Strongylocentrotus purpuratus,...    48   0.42   1
(EK827449) 1093017273418 Global-Ocean-Sampling_GS-33-01-01-1...    48   0.42   1
(EH013920) USDA-FP_186673 Lysiphlebus testaceipes adult whol...    48   0.42   1
(CU559111) Spc_11YC16 cDNA clone of Developmental Stages Lib...    48   0.42   1
(EY385521) CAXA5732.rev CAXA Helobdella robusta Subtracted L...    48   0.42   1
(AC176980) Strongylocentrotus purpuratus clone R3-1103C23, W...    42   0.45   2
(AC177020) Strongylocentrotus purpuratus clone R3-1038L04, W...    42   0.48   2
(AC184595) Strongylocentrotus purpuratus clone R3-3110B2, WO...    46   0.49   2
(AC178491) Strongylocentrotus purpuratus clone R3-3034B2, WO...    40   0.50   2
(AC180964) Strongylocentrotus purpuratus clone R3-3058N9, WO...    40   0.51   2
(AC178225) Strongylocentrotus purpuratus clone R3-1116H1, WO...    42   0.54   3
(AC184607) Strongylocentrotus purpuratus clone R3-3087A2, WO...    40   0.57   3
(AC181677) Strongylocentrotus purpuratus clone R3-1040O2, WO...    40   0.64   5
(AC179175) Strongylocentrotus purpuratus clone R3-4016L2, WO...    42   0.64   3
(AC178061) Strongylocentrotus purpuratus clone R3-3056L18, W...    40   0.67   3
(AC176438) Strongylocentrotus purpuratus clone R3-3066N3, WO...    42   0.69   2
(AC176599) Strongylocentrotus purpuratus clone R3-3078B1, WO...    46   0.70   4
(AY915462) Schistosoma japonicum SJCHGC06892 protein mRNA, c...    34   0.71   3
(CV740429) SJAL_027_04.T3 SJL Schistosoma japonicum cDNA, mR...    34   0.72   3
(AC132784) Rattus norvegicus clone CH230-145A12, *** SEQUENC...    42   0.77   2
(AP007850) Lotus japonicus genomic DNA, chromosome 1, clone:...    38   0.80   3
(AC176427) Strongylocentrotus purpuratus clone R3-12C1, WORK...    42   0.81   3
(EY382686) CAXA4179.fwd CAXA Helobdella robusta Subtracted L...    40   0.90   2
(EF710652) Glyptapanteles indiensis clone BAC 1H21, complete...    34   0.91   2
(AC180174) Strongylocentrotus purpuratus clone R3-4001E1, WO...    40   0.94   4
(EU001252) Glyptapanteles indiensis bracovirus segment 23, c...    34   0.99   2
(AZ183942) SP_1002_A1_H11_SP6 Strongylocentrotus purpuratus,...    38   1.0    3
(AC128907) Rattus norvegicus clone CH230-2K21, WORKING DRAFT...    46   1.0    2
(AC178924) Strongylocentrotus purpuratus clone R3-3115F22, W...    40   1.1    3
(FP017285) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   1.1    3
(CR812761) Zebrafish DNA sequence from clone CH211-51P7 in l...    42   1.2    2
(AC179228) Strongylocentrotus purpuratus clone R3-1106O16, W...    40   1.2    3
(AU072534) Dictyostelium discoideum slug cDNA, clone SSE814.       34   1.2    2
(AC179707) Strongylocentrotus purpuratus clone R3-1021I1, WO...    46   1.4    4
(AC119316) Rattus norvegicus clone CH230-195F14, *** SEQUENC...    42   1.4    3
(AC168611) Strongylocentrotus purpuratus clone R3-3046G5, WO...    42   1.4    4
(AC176589) Strongylocentrotus purpuratus clone R3-3077K21, W...    40   1.4    4
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    38   1.4    3
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    40   1.5    4
(BX927206) Zebrafish DNA sequence from clone CH211-71K14 in ...    40   1.6    2
(AC178002) Strongylocentrotus purpuratus clone R3-3052F10, W...    42   1.6    3
(AC181547) Strongylocentrotus purpuratus clone R3-1109O21, W...    42   1.6    4
(AC168814) Strongylocentrotus purpuratus clone R3-13G18, WOR...    40   1.6    4
(CR855388) Zebrafish DNA sequence from clone DKEY-38O15.           46   1.7    1
(CR450704) Zebrafish DNA sequence from clone DKEY-65O14 in l...    46   1.7    1
(BX927196) Zebrafish DNA sequence from clone DKEY-121D19 in ...    46   1.7    1
(BX544876) Zebrafish DNA sequence from clone CH211-167B20 in...    46   1.7    1
(AL929128) Zebrafish DNA sequence from clone CH211-203P17 in...    46   1.7    1
(AC158921) Mus musculus chromosome 15, clone RP23-120K5, com...    46   1.7    1
(AC135736) Mus musculus BAC clone RP23-251A14 from chromosom...    46   1.7    1
(AC122392) Mus musculus BAC clone RP24-81I14 from chromosome...    46   1.7    1
(AC102101) Mus musculus chromosome 15, clone RP23-74N15, com...    46   1.7    1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    46   1.7    1
(CT571261) Medicago truncatula chromosome 5 clone mth2-67l4,...    46   1.7    1
(AP010277) Lotus japonicus genomic DNA, chromosome 2, clone:...    46   1.7    1
(AC153725) Medicago truncatula clone mth2-78c5, complete seq...    46   1.7    1
(EA686143) Sequence 65022 from patent US 7365185.                  46   1.7    1
(AC157844) Ornithorhynchus anatinus clone OA_Bb-428P9, WORKI...    46   1.7    1
(AC130767) Rattus norvegicus clone CH230-233E4, *** SEQUENCI...    46   1.7    1
(CR940368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.7    1
(AP009985) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.7    1
(AC216324) Pteropus vampyrus clone CH279-367G23, WORKING DRA...    46   1.7    1
(AC201593) Strongylocentrotus purpuratus clone R3-41H21, WOR...    46   1.7    1
(AC201480) Strongylocentrotus purpuratus clone R3-3056D07, W...    46   1.7    1
(AC201008) Strongylocentrotus purpuratus clone R3-12F3, WORK...    46   1.7    1
(AC181437) Strongylocentrotus purpuratus clone R3-1111P11, W...    46   1.7    1
(AC180991) Strongylocentrotus purpuratus clone R3-3026N21, W...    46   1.7    1
(AC180847) Strongylocentrotus purpuratus clone R3-3025N11, W...    46   1.7    1
(AC180796) Strongylocentrotus purpuratus clone R3-3073K14, W...    46   1.7    1
(AC180641) Strongylocentrotus purpuratus clone R3-3089M05, W...    46   1.7    1
(AC180148) Strongylocentrotus purpuratus clone R3-4004D20, W...    46   1.7    1
(AC180050) Strongylocentrotus purpuratus clone R3-25F23, WOR...    46   1.7    1
(AC179828) Strongylocentrotus purpuratus clone R3-1012G5, WO...    46   1.7    1
(AC179763) Strongylocentrotus purpuratus clone R3-1016L20, W...    46   1.7    1
(AC179654) Strongylocentrotus purpuratus clone R3-1024I05, W...    46   1.7    1
(AC179640) Strongylocentrotus purpuratus clone R3-1025D19, W...    46   1.7    1
(AC179569) Strongylocentrotus purpuratus clone R3-1029O7, WO...    46   1.7    1
(AC179463) Strongylocentrotus purpuratus clone R3-1036O20, W...    46   1.7    1
(AC179207) Strongylocentrotus purpuratus clone R3-4019N9, WO...    46   1.7    1
(AC178729) Strongylocentrotus purpuratus clone R3-12P2, WORK...    46   1.7    1
(AC178726) Strongylocentrotus purpuratus clone R3-12O15, WOR...    46   1.7    1
(AC178500) Strongylocentrotus purpuratus clone R3-3032L5, WO...    46   1.7    1
(AC178454) Strongylocentrotus purpuratus clone R3-3039I15, W...    46   1.7    1
(AC178237) Strongylocentrotus purpuratus clone R3-3086C18, W...    46   1.7    1
(AC177746) Strongylocentrotus purpuratus clone R3-1008E12, W...    46   1.7    1
(AC177491) Strongylocentrotus purpuratus clone R3-61N20, WOR...    46   1.7    1
(AC177445) Strongylocentrotus purpuratus clone R3-5E17, WORK...    46   1.7    1
(AC177284) Strongylocentrotus purpuratus clone R3-1033H21, W...    46   1.7    1
(AC177273) Strongylocentrotus purpuratus clone R3-1033N24, W...    46   1.7    1
(AC177092) Strongylocentrotus purpuratus clone R3-4012F20, W...    46   1.7    1
(AC176995) Strongylocentrotus purpuratus clone R3-1103B01, W...    46   1.7    1
(AC176851) Strongylocentrotus purpuratus clone R3-3120J18, W...    46   1.7    1
(AC176765) Strongylocentrotus purpuratus clone R3-3097O8, WO...    46   1.7    1
(AC176602) Strongylocentrotus purpuratus clone R3-3079B1, WO...    46   1.7    1
(AC176199) Strongylocentrotus purpuratus clone R3-3066G23, W...    46   1.7    1
(AC175945) Strongylocentrotus purpuratus clone R3-17C11, WOR...    46   1.7    1
(AC174807) Strongylocentrotus purpuratus clone R3-3009J10, W...    46   1.7    1
(AC173976) Strongylocentrotus purpuratus clone R3-3004E3, WO...    46   1.7    1
(AC168398) Strongylocentrotus purpuratus clone R3-4002K7, WO...    46   1.7    1
(FH025166) CHO_OF3249xn21r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.7    1
(ER796849) PPTGM24TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   1.7    1
(EK524960) 1095515638411 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.7    1
(ED796785) MFCAC37TF Coffea arabica MF library, 0.8-2KB Coff...    46   1.7    1
(BZ176203) CH230-443I4.TJ CHORI-230 Segment 2 Rattus norvegi...    46   1.7    1
(FL675765) CIRGL003G04 CiRG Cichorium intybus cDNA 3', mRNA ...    46   1.7    1
(EY337775) CAWY8555.rev CAWY Helobdella robusta Subtracted E...    46   1.7    1
(EY309892) CAWX21844.fwd CAWX Helobdella robusta Primary Ear...    46   1.7    1
(EX852925) CBNC9844.rev CBNC Phycomyces blakesleeanus NRRL15...    46   1.7    1
(EX845244) CBNC5805.rev CBNC Phycomyces blakesleeanus NRRL15...    46   1.7    1
(EX844024) CBNC517.rev CBNC Phycomyces blakesleeanus NRRL155...    46   1.7    1
(EX842695) CBNC11477.rev CBNC Phycomyces blakesleeanus NRRL1...    46   1.7    1
(EX842517) CBNC11379.rev CBNC Phycomyces blakesleeanus NRRL1...    46   1.7    1
(EX517326) Hops-CTAB-07_2007-06-07/Hops_CTAB-7R_D08_029_1 Hu...    46   1.7    1
(ES654138) Hops-Column2_2007-03-15/Hops-Column2_C01_006_1 Hu...    46   1.7    1
(AC179070) Strongylocentrotus purpuratus clone R3-4009E11, W...    40   1.7    5
(AC178185) Strongylocentrotus purpuratus clone R3-3082E2, WO...    40   1.7    4
(AC184483) Strongylocentrotus purpuratus clone R3-1110K19, W...    40   1.7    3
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    36   1.8    4
(AC168440) Strongylocentrotus purpuratus clone R3-39F11, WOR...    42   1.8    3
(AC176393) Strongylocentrotus purpuratus clone R3-3012P16, W...    42   1.8    2
(AC168523) Strongylocentrotus purpuratus clone R3-3108A8, WO...    42   1.8    4
(AC178849) Strongylocentrotus purpuratus clone R3-26H1, WORK...    38   1.9    5
(AC177171) Strongylocentrotus purpuratus clone R3-4015O06, W...    40   1.9    3
(CT027627) Zebrafish DNA sequence from clone CH211-214F1 in ...    40   2.0    3
(AC179091) Strongylocentrotus purpuratus clone R3-4010A15, W...    42   2.0    4
(AC223193) Bos taurus clone CH240-426N6, WORKING DRAFT SEQUE...    38   2.0    3
(AC176981) Strongylocentrotus purpuratus clone R3-36F20, WOR...    42   2.0    2
(AC177448) Strongylocentrotus purpuratus clone R3-1030L10, W...    40   2.0    2
(AC179357) Strongylocentrotus purpuratus clone R3-59F5, WORK...    40   2.1    4
(AC168808) Strongylocentrotus purpuratus clone R3-13H1, WORK...    38   2.1    4
(AC092162) Homo sapiens BAC clone RP11-632P5 from 2, complet...    40   2.1    2
(AC181702) Strongylocentrotus purpuratus clone R3-1040B20, W...    40   2.1    3
(AC180151) Strongylocentrotus purpuratus clone R3-4005B02, W...    40   2.2    3
(AB086179) Anthoceros formosae chloroplast DNA, complete gen...    42   2.2    2
(AC180806) Strongylocentrotus purpuratus clone R3-3071I04, W...    40   2.2    2
(CR391974) Zebrafish DNA sequence from clone CH211-59E10 in ...    40   2.4    2
(AC181564) Strongylocentrotus purpuratus clone R3-7P1, WORKI...    40   2.4    3
(AC178645) Strongylocentrotus purpuratus clone R3-11G01, WOR...    40   2.4    2
(AC173371) Strongylocentrotus purpuratus clone R3-14D2, WORK...    40   2.5    4
(AC181870) Strongylocentrotus purpuratus clone R3-1019K19, W...    40   2.6    3
(AC129092) Medicago truncatula clone mth2-17n16, complete se...    38   2.7    3
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   2.8    4
(AC103479) Rattus norvegicus clone CH230-191J2, WORKING DRAF...    40   2.8    2
(EB939364) 9704119 ZF34 Danio rerio cDNA clone 3410590, mRNA...    40   2.8    2
(AC176650) Strongylocentrotus purpuratus clone R3-112N12, WO...    40   2.9    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   2.9    9
(AK046090) Mus musculus adult male corpora quadrigemina cDNA...    40   3.0    2
(AC200983) Strongylocentrotus purpuratus clone R3-12A7, WORK...    40   3.1    4
(AC176492) Strongylocentrotus purpuratus clone R3-3072D11, W...    44   3.2    4
(BX248312) Zebrafish DNA sequence from clone CH211-139O4.          34   3.2    2
(AC184458) Strongylocentrotus purpuratus clone R3-4003P19, W...    32   3.2    2
(CK360333) AGENCOURT_17113197 NIH_ZGC_4 Danio rerio cDNA clo...    40   3.2    2
(AC181944) Strongylocentrotus purpuratus clone R3-1008H7, WO...    42   3.3    3
(BJ419314) Dictyostelium discoideum cDNA clone:ddv35p15, 5' ...    38   3.4    2
(EK593461) 1092343738241 Global-Ocean-Sampling_GS-33-01-01-1...    40   3.5    2
(AC122191) Mus musculus BAC clone RP23-42J4 from 6, complete...    40   3.5    3
(EY369144) CAXA12202.fwd CAXA Helobdella robusta Subtracted ...    40   3.5    2
(FI219180) CccaBa037-H8TR CccABa Cajanus cajan genomic clone...    38   3.6    2
(AC172400) Strongylocentrotus purpuratus clone R3-14D16, WOR...    40   3.6    3
(AC091447) Rattus norvegicus clone CH230-1O6, *** SEQUENCING...    40   3.7    2
(AC176806) Strongylocentrotus purpuratus clone R3-3109E22, W...    40   3.9    4
(AC176256) Strongylocentrotus purpuratus clone R3-3060L22, W...    44   3.9    2
(AC157829) Strongylocentrotus purpuratus clone R3-13A6, WORK...    40   4.0    3
(AC181933) Strongylocentrotus purpuratus clone R3-1009F16, W...    40   4.1    3
(AC178147) Strongylocentrotus purpuratus clone R3-3078O13, W...    40   4.2    3
(AU061752) Dictyostelium discoideum slug cDNA, clone SLF690.       40   4.3    2
(ET813317) CHO_OF735xl06r1.ab1 CHO_OF Nicotiana tabacum geno...    32   4.3    2
(AC176031) Strongylocentrotus purpuratus clone R3-18F9, WORK...    40   4.3    5
(AC201592) Strongylocentrotus purpuratus clone R3-40N22, WOR...    40   4.3    3
(FH033527) CHO_OF3264xk21f1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   4.3    2
(BX005232) Zebrafish DNA sequence from clone CH211-172G24 in...    38   4.3    4
(AC201059) Strongylocentrotus purpuratus clone R3-12O9, WORK...    40   4.4    2
(AC201687) Strongylocentrotus purpuratus clone R3-3121J19, W...    40   4.4    3
(AC168487) Strongylocentrotus purpuratus clone R3-3117I23, W...    40   4.6    4
(AC176202) Strongylocentrotus purpuratus clone R3-3005B8, WO...    40   4.6    5
(AC219214) Solanum lycopersicum chromosome 6 clone C06HBa015...    38   4.7    2
(ES402915) MUT06-H06.y1d-s SHGC-MUT Mytilus californianus cD...    38   4.8    2
(AC179481) Strongylocentrotus purpuratus clone R3-63M7, WORK...    40   4.9    3
(AC201355) Strongylocentrotus purpuratus clone R3-17B10, WOR...    40   5.0    3
(AC178136) Strongylocentrotus purpuratus clone R3-3078G23, W...    40   5.1    3
(AC179958) Strongylocentrotus purpuratus clone R3-20M15, WOR...    40   5.2    4
(AC173729) Strongylocentrotus purpuratus clone R3-3017H8, WO...    40   5.3    3
(AC168806) Strongylocentrotus purpuratus clone R3-13H13, WOR...    40   5.3    5
(CR381638) Zebrafish DNA sequence from clone DKEYP-20A11 in ...    42   5.4    3
(AC179042) Strongylocentrotus purpuratus clone R3-4005C17, W...    40   5.4    4
(AC201024) Strongylocentrotus purpuratus clone R3-12I10, WOR...    40   5.4    3
(AC178140) Strongylocentrotus purpuratus clone R3-3078L19, W...    40   5.5    2
(AC179537) Strongylocentrotus purpuratus clone R3-6J22, WORK...    42   5.6    2
(AC168327) Strongylocentrotus purpuratus clone R3-58P7, WORK...    40   6.0    3
(AC179824) Strongylocentrotus purpuratus clone R3-1012N7, WO...    40   6.1    5
(BX465867) Zebrafish DNA sequence from clone DKEYP-24D6 in l...    42   6.2    3
(AC175925) Strongylocentrotus purpuratus clone R3-3043K20, W...    40   6.2    3
(AC177367) Strongylocentrotus purpuratus clone R3-52L04, WOR...    40   6.3    3
(AC176900) Strongylocentrotus purpuratus clone R3-1105A16, W...    40   6.3    3
(AC134046) Oryza sativa Japonica Group chromosome 11 clone O...    42   6.3    3
(CT025939) Zebrafish DNA sequence from clone DKEY-99P10 in l...    44   6.5    1
(CR392032) Zebrafish DNA sequence from clone DKEYP-64A3 in l...    44   6.5    1
(BX950865) Zebrafish DNA sequence from clone DKEYP-100E12 in...    44   6.5    1
(BX927382) Zebrafish DNA sequence from clone DKEY-168I13 in ...    44   6.5    1
(BX511224) Zebrafish DNA sequence from clone CH211-113D14 in...    44   6.5    1
(AC149879) Xenopus (Silurana) tropicalis clone CH216-40M16, ...    44   6.5    1
(AC175116) Mus musculus BAC clone RP23-396H16 from chromosom...    44   6.5    1
(AC159298) Mus musculus BAC clone RP23-265N1 from chromosome...    44   6.5    1
(AC151965) Mus musculus BAC clone RP24-173B17 from chromosom...    44   6.5    1
(AC058789) Mus musculus strain C57BL/6J clone rp23-428p20 ma...    44   6.5    1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    44   6.5    1
(BX284751) Neurospora crassa DNA linkage group II BAC contig...    44   6.5    1
(AY062730) Arabidopsis thaliana Unknown protein (At2g19870; ...    44   6.5    1
(AP010276) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   6.5    1
(AP004955) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   6.5    1
(AM459938) Vitis vinifera contig VV78X031816.6, whole genome...    44   6.5    1
(AF499436) Arabidopsis thaliana hypothetical protein mRNA, c...    44   6.5    1
(AC215420) Solanum lycopersicum chromosome 2 clone C02HBa020...    44   6.5    1
(AC215388) Solanum lycopersicum chromosome 2 clone C02HBa012...    44   6.5    1
(AC005169) Arabidopsis thaliana chromosome 2 clone F6F22 map...    44   6.5    1
(AB030143) Pinus densiflora pdsts1-35 mRNA for pinosylvin sy...    44   6.5    1
(DL119717) Diagnosis of existing illnesses or that praedispo...    44   6.5    1
(DL119716) Diagnosis of existing illnesses or that praedispo...    44   6.5    1
(DL043082) Diagnosis of existing illnesses or that praedispo...    44   6.5    1
(DL043081) Diagnosis of existing illnesses or that praedispo...    44   6.5    1
(GM655546) Sequence 34068 from Patent EP1942197.                   44   6.5    1
(GM655545) Sequence 34067 from Patent EP1942197.                   44   6.5    1
(DQ018837) Argiope aetherea cytochrome oxidase subunit II (C...    44   6.5    1
(DQ018828) Argiope versicolor cytochrome oxidase subunit II ...    44   6.5    1
(DQ018821) Argiope mangal cytochrome oxidase subunit II (COI...    44   6.5    1
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ...    44   6.5    1
(AC171128) Helobdella robusta clone CH306-1A10, complete seq...    44   6.5    1
(AC120804) Rattus norvegicus clone CH230-15O3, *** SEQUENCIN...    44   6.5    1
(AC103434) Rattus norvegicus clone CH230-157I5, *** SEQUENCI...    44   6.5    1
(AC094841) Rattus norvegicus clone CH230-6B4, WORKING DRAFT ...    44   6.5    1
(FP236431) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.5    1
(CU468867) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.5    1
(CU457775) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.5    1
(AP007948) Lotus japonicus genomic DNA, clone: LjB10M13, BM1...    44   6.5    1
(AP007552) Lotus japonicus genomic DNA, clone: LjT29K06, TM0...    44   6.5    1
(AC233053) Solanum tuberosum chromosome 6 clone RHPOTKEY063H...    44   6.5    1
(AC207403) Zea mays chromosome 5 clone CH201-250O4; ZMMBBc02...    44   6.5    1
(AC201392) Strongylocentrotus purpuratus clone R3-17J23, WOR...    44   6.5    1
(AC181957) Strongylocentrotus purpuratus clone R3-1003J22, W...    44   6.5    1
(AC181652) Strongylocentrotus purpuratus clone R3-10K16, WOR...    44   6.5    1
(AC180925) Strongylocentrotus purpuratus clone R3-3064C21, W...    44   6.5    1
(AC180521) Strongylocentrotus purpuratus clone R3-3099C8, WO...    44   6.5    1
(AC180440) Strongylocentrotus purpuratus clone R3-3102L05, W...    44   6.5    1
(AC180426) Strongylocentrotus purpuratus clone R3-3103F7, WO...    44   6.5    1
(AC180061) Strongylocentrotus purpuratus clone R3-3030B18, W...    44   6.5    1
(AC179857) Strongylocentrotus purpuratus clone R3-1007G7, WO...    44   6.5    1
(AC179542) Strongylocentrotus purpuratus clone R3-6L18, WORK...    44   6.5    1
(AC179143) Strongylocentrotus purpuratus clone R3-4012D23, W...    44   6.5    1
(AC178841) Strongylocentrotus purpuratus clone R3-26D18, WOR...    44   6.5    1
(AC177972) Strongylocentrotus purpuratus clone R3-3049P7, WO...    44   6.5    1
(AC177381) Strongylocentrotus purpuratus clone R3-52O20, WOR...    44   6.5    1
(AC176779) Strongylocentrotus purpuratus clone R3-3104N9, WO...    44   6.5    1
(AC173104) Bos taurus clone CH240-162D5, WORKING DRAFT SEQUE...    44   6.5    1
(AC163808) Bos taurus clone CH240-139B21, *** SEQUENCING IN ...    44   6.5    1
(FI018019) CHO_OF6923xg03f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.5    1
(FH331481) CHO_OF4579xb10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.5    1
(ET964090) CHO_OF624xo18r1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.5    1
(ET964022) CHO_OF624xo18f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.5    1
(ET620760) fcg3x.232150l20.f C. graminicola genomic sequence...    44   6.5    1
(ET604066) fcg3x.224550k01 C. graminicola genomic sequence G...    44   6.5    1
(ET567533) fcg3x.229150l07 C. graminicola genomic sequence G...    44   6.5    1
(ET557056) fcg3x.606750f03.f C. graminicola genomic sequence...    44   6.5    1
(ET465340) fcg2x.pk260.a9a C. graminicola genomic sequence G...    44   6.5    1
(ET465264) fcg2x.pk260.a9 C. graminicola genomic sequence Gl...    44   6.5    1
(ET403304) S0237I08_SP6 CHORI-214 Salmo salar genomic clone ...    44   6.5    1
(ED745390) GM_WBb0109E14.f GM_WBb Glycine max genomic clone ...    44   6.5    1
(AJ587012) Arabidopsis thaliana T-DNA flanking sequence, lef...    44   6.5    1
(AG986707) Hemicentrotus pulcherrimus BAC clone: BUB1-09E14_...    44   6.5    1
(DE152263) Bombyx mori genomic DNA, Fosmid clone:RO0293-K03_R.     44   6.5    1
(CW488036) fsbb001f254d10f0 Sorghum methylation filtered lib...    44   6.5    1
(CW484438) fsbb001f246j09k0 Sorghum methylation filtered lib...    44   6.5    1
(CW213965) 104_645_11191842_116_37037_067 Sorghum methylatio...    44   6.5    1
(CW121047) 104_498_11109675_116_34651_004 Sorghum methylatio...    44   6.5    1
(BH714232) BOMCW11TF BO_2_3_KB Brassica oleracea genomic clo...    44   6.5    1
(BH587904) BOGWC39TR BOGW Brassica oleracea genomic clone BO...    44   6.5    1
(EG471969) AYBAH04T505TF pooled cDNA populations Arabidopsis...    44   6.5    1
(EG471674) AYBAH05T508TR pooled cDNA populations Arabidopsis...    44   6.5    1
(EG442373) AYABZ08T008TR pooled cDNA populations Arabidopsis...    44   6.5    1
(EB443222) KR2B.001J13F.050815T7 KR2B Nicotiana tabacum cDNA...    44   6.5    1
(EB208395) PEG002-C-007909-301 Normalized Pedal-Pleural Gang...    44   6.5    1
(DR278225) 972650 CERES-149 Arabidopsis thaliana cDNA clone ...    44   6.5    1
(DR278224) 4500805 CERES-148 Arabidopsis thaliana cDNA clone...    44   6.5    1
(CD810800) 459 Lingulodinium polyedrum Lingulodinium polyedr...    44   6.5    1
(CD809768) 458 Lingulodinium polyedrum Lingulodinium polyedr...    44   6.5    1
(CD809644) 309 Lingulodinium polyedrum Lingulodinium polyedr...    44   6.5    1
(CB081052) hk45f02.g1 Gnetum leaves (NYBG) Gnetum gnemon cDN...    44   6.5    1
(BQ072724) AGENCOURT_6763162 NIH_MGC_118 Homo sapiens cDNA c...    44   6.5    1
(BM162015) EST564538 PyBS Plasmodium yoelii yoelii cDNA clon...    44   6.5    1
(GD229308) G1045P378RH18.T1 Aplysia californica Pooled Norma...    44   6.5    1
(GD223227) G1045P383RG13.T1 Aplysia californica Pooled Norma...    44   6.5    1
(FG193009) AGN_PNL219dr1_b5.trimmed.seq AGN_PNL Nicotiana ta...    44   6.5    1
(EY620781) CAWW15935.fwd CAWW Capitella sp. I ECS-2004 Subtr...    44   6.5    1
(EY620780) CAWW15935.rev CAWW Capitella sp. I ECS-2004 Subtr...    44   6.5    1
(EY355443) CAWZ3823.rev CAWZ Helobdella robusta Primary Late...    44   6.5    1
(FM178379) Aliivibrio salmonicida LFI1238 chromosome 1 compl...    44   6.5    1
(CP000300) Methanococcoides burtonii DSM 6242, complete genome.    44   6.5    1
(AC179533) Strongylocentrotus purpuratus clone R3-1035A4, WO...    42   6.5    2
(AC180656) Strongylocentrotus purpuratus clone R3-3019N12, W...    40   6.6    4
(AC177615) Strongylocentrotus purpuratus clone R3-14A5, WORK...    36   6.7    3
(AC173845) Strongylocentrotus purpuratus clone R3-1117C12, W...    42   6.8    3
(AC179418) Strongylocentrotus purpuratus clone R3-1101A13, W...    40   6.8    2
(AC180644) Strongylocentrotus purpuratus clone R3-3089P18, W...    40   6.9    4
(AC179770) Strongylocentrotus purpuratus clone R3-1016H14, W...    40   6.9    3
(AC168762) Strongylocentrotus purpuratus clone R3-3004F4, WO...    40   7.0    2
(AC184370) Strongylocentrotus purpuratus clone R3-1011K1, WO...    40   7.0    2
(AC177222) Strongylocentrotus purpuratus clone R3-40I7, WORK...    40   7.2    2
(AC179066) Strongylocentrotus purpuratus clone R3-4009B23, W...    40   7.3    2
(AC176027) Strongylocentrotus purpuratus clone R3-3024L21, W...    40   7.4    3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   7.4    6
(AL034426) Human DNA sequence from clone RP4-580G13 on chrom...    40   7.5    2
(BX322793) Zebrafish DNA sequence from clone CH211-208I8 in ...    40   7.6    3
(AC178450) Strongylocentrotus purpuratus clone R3-3039F18, W...    40   7.6    2
(AC179628) Strongylocentrotus purpuratus clone R3-1025N13, W...    40   7.6    2
(AC168318) Strongylocentrotus purpuratus clone R3-64O21, WOR...    42   7.7    2
(AC177071) Strongylocentrotus purpuratus clone R3-4004J21, W...    40   7.8    2
(AC174936) Strongylocentrotus purpuratus clone R3-4016H14, W...    40   7.8    2
(AF140067) Apis mellifera carnica microsatellite 4A3 sequence.     40   7.8    2
(AC179836) Strongylocentrotus purpuratus clone R3-1012D6, WO...    38   7.9    5
(AC184303) Strongylocentrotus purpuratus clone R3-15H3, WORK...    40   8.0    5
(AC200973) Strongylocentrotus purpuratus clone R3-112M5, WOR...    40   8.0    3
(AC177792) Strongylocentrotus purpuratus clone R3-1002C21, W...    40   8.0    4
(AC180420) Strongylocentrotus purpuratus clone R3-3106B21, W...    40   8.1    5
(CU207214) Zebrafish DNA sequence from clone CH211-106K22.         40   8.2    2
(AC176066) Strongylocentrotus purpuratus clone R3-3024E19, W...    40   8.3    2
(AC198836) Ornithorhynchus anatinus clone OA_Bb-498J4, WORKI...    40   8.4    2
(AC179166) Strongylocentrotus purpuratus clone R3-4016F18, W...    40   8.6    2
(AC176679) Strongylocentrotus purpuratus clone R3-3085A03, W...    40   8.7    4
(AC180722) Strongylocentrotus purpuratus clone R3-3083H22, W...    40   8.8    3
(EG963454) AU_Ich_020D_A05 Whole organism normalized cDNA li...    40   9.0    2
(AC175974) Strongylocentrotus purpuratus clone R3-17G09, WOR...    40   9.2    2
(DX475959) Cpl18165 Papaya Genomic DNA BAC Library Carica pa...    40   9.2    2
(AC180667) Strongylocentrotus purpuratus clone R3-3089K13, W...    40   9.3    2
(AC177713) Strongylocentrotus purpuratus clone R3-1011D17, W...    38   9.3    4
(AC177351) Strongylocentrotus purpuratus clone R3-49E24, WOR...    40   9.4    3
(BX927228) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   9.4    2
(AC177151) Strongylocentrotus purpuratus clone R3-4015A11, W...    40   9.7    4

>(AU073824) Dictyostelium discoideum slug cDNA, clone SSI452.
          Length = 240

 Score =  182 bits (92), Expect(2) = 3e-51
 Identities = 92/92 (100%)
 Strand = Plus / Plus


Query: 149 catcagttatcatcatctaggacaatgatagatcatcataatagtgatcctacttcatct 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 catcagttatcatcatctaggacaatgatagatcatcataatagtgatcctacttcatct 208


Query: 209 tcatcaccaaccaatgaaagtcaaattcatca 240
           ||||||||||||||||||||||||||||||||
Sbjct: 209 tcatcaccaaccaatgaaagtcaaattcatca 240

 Score = 56.0 bits (28), Expect(2) = 3e-51
 Identities = 28/28 (100%)
 Strand = Plus / Plus


Query: 75  aagttagaagtagtagtaatagtagtag 102
           ||||||||||||||||||||||||||||
Sbjct: 75  aagttagaagtagtagtaatagtagtag 102

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 375,278,921
Number of extensions: 25350949
Number of successful extensions: 2580911
Number of sequences better than 10.0: 456
Length of query: 646
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 622
Effective length of database: 99,340,224,878
Effective search space: 61789619874116
Effective search space used: 61789619874116
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Contig-U01835-1Q.Seq.d
         (646 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 340,388,657
Number of extensions: 3111841
Number of successful extensions: 3779
Number of sequences better than 10.0: 0
Number of HSP's gapped: 3779
Number of HSP's successfully gapped: 0
Length of query: 215
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 92
Effective length of database: 653,084,107
Effective search space: 60083737844
Effective search space used: 60083737844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.71  gvh: 0.26  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U01835-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0