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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11836-1
Contig ID Contig-U11836-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11836-1 (Contig-U11836-1Q) /CSM_Contig/Contig-U11836-1Q.Seq.d
CAAATCAAAACAATGGTATTGATAAAAATGAAAAACTAAAGCAATTTGGT
AGAGTTTTTGGAGAATCACCAATTCATTATGATTTATATACGGTTACATT
TTTACCATCAAATATATTTCAAAANGGTGAAGTTGTATTGGTACCAAGAT
CAAGAGGTGGTTTCACTTATGCAAAAATCTATGAAGCATCAGATTCAAAT
ATTTGTCATAATGATCCAACAGTTCATCATCATGTTGTTCAATACCGTGC
GGTTTATCCATCAAATGGTAAAAGGGATAATCTTTACAAGGATTTATCAG
CAATTTACTTGGGTAAATTAATACCAATGGAAAGATTACCACCAAATGTC
AAAAAGTATACATTAACCCCTCCAAATGAGAGCTTTTCAATCATTGGTCA
AAAAGCATCGGTAAGANATTTACAGGGTATTTTATTCTCACCATTTTCAA
AGTTTCATATGAATCAAATCGTATTGGTACCAAGAAGTAAAGGTGGTTTC
ACTTATGNNNNNNNNN----------GCAAAAAGAAATAAATTTAAATCA
TTTTCAGTTTCATCATTAAAGAAATCATTAGATTATTATATTTTCANAGG
TTATGANGTAGTTGCATTCGTTCCANAATCATTTGCATTTAGAAAACCCC
ATAATGATCCAAAAAAGACATTTACTATGTTTGATTACAATGATTTGGCA
NATGATTTAGTTGGACTTCAAAAATTGACAGATTCAGGTTATGTTTGTTT
AACCCCAGCTCAAGATTATGACGATAGNTATACCNTTCATTATGCTAAAA
ANAATGGNGCTTGNATCGTCNCCAATGATCGNTACAATGATCNCATTGAA
AAGCAACCAAATGAAATTGAAAAAGCCAAAACTAGAAAATTCATTANAGA
TCNTTGNATTTCCNTTGCTTTTGTTCGNAATGAATTCCTTCCAAATCCAG
ATTTCAAATTTCCAACAACATAAATTTANAAAATCNATTGAACNTTGATC
NTTTTTATCNCCNCNTTCTCNCAANCAGNCTATTTTTTTTTTTTCTTCAA
CTTGTTTGGAAAATGAANATTTTTTTTTAAAAGTAAAA
Gap gap included
Contig length 1078
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7092630
End point 7093700
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U11836
List of clone(s) 

est1=CHL720F,1,507
est2=CHL720Z,508,990
est3=AFI826Z,576,1070
Translated Amino Acid sequence 
NQNNGIDKNEKLKQFGRVFGESPIHYDLYTVTFLPSNIFQXGEVVLVPRSRGGFTYAKIY
EASDSNICHNDPTVHHHVVQYRAVYPSNGKRDNLYKDLSAIYLGKLIPMERLPPNVKKYT
LTPPNESFSIIGQKASVRXLQGILFSPFSKFHMNQIVLVPRSKGGFTYXXX---

---AKRNKFKSFSVSSLKKSLDYYIFXGYXVVAFVPXSFAFRKPHNDPKKTFTMFDYNDL
AXDLVGLQKLTDSGYVCLTPAQDYDDXYTXHYAKXNGAXIVXNDRYNDXIEKQPNEIEKA
KTRKFIXDXXISXAFVRNEFLPNPDFKFPTT*ixkix*tlixfixxfsqxxyfffffnlf
gk*xfffksk
Translated Amino Acid sequence (All Frames) 
Frame A:
qiktmvlikmkn*snlveflenhqfimiyirlhfyhqiyfkxvklywyqdqevvslmqks
mkhqiqifvimiqqfiimlfntvrfihqmvkgiiftriyqqftwvn*yqwkdyhqmsksi
h*plqmrafqslvkkhr*xiyrvfyshhfqsfi*iksywyqevkvvslmxxx---

---AKRNKFKSFSVSSLKKSLDYYIFXGYXVVAFVPXSFAFRKPHNDPKKTFTMFDYNDL
AXDLVGLQKLTDSGYVCLTPAQDYDDXYTXHYAKXNGAXIVXNDRYNDXIEKQPNEIEKA
KTRKFIXDXXISXAFVRNEFLPNPDFKFPTT*ixkix*tlixfixxfsqxxyfffffnlf
gk*xfffksk

Frame B:
kskqwy**k*ktkaiw*sfwritnsl*fiygyiftikyiskx*scigtkikrwfhlcknl
*sirfkyls**snssssccsipcglsikw*kg*slqgfisnllg*intngkittkcqkvy
inpsk*elfnhwsksigkxftgyfiltifkvsyesnrigtkk*rwfhlxxx---

---qkeinlnhfqfhh*rnh*iiifsxvmx*lhsfxnhlhlenpimiqkrhllclitmiw
xmi*ldfkn*qiqvmfv*pqlkimtixipfimlkxmxlxsspmixtmixlksnqmklkkp
klenslxixxfplllfxmnsfqiqisnfqqhkfxksiex*sflspxsxxqxifffsstcl
enexfflkvk

Frame C:
NQNNGIDKNEKLKQFGRVFGESPIHYDLYTVTFLPSNIFQXGEVVLVPRSRGGFTYAKIY
EASDSNICHNDPTVHHHVVQYRAVYPSNGKRDNLYKDLSAIYLGKLIPMERLPPNVKKYT
LTPPNESFSIIGQKASVRXLQGILFSPFSKFHMNQIVLVPRSKGGFTYXXX---

---kkk*i*iifsfiikeiirllyfxrl*xscirsxiici*ktp**skkdiyyv*lq*fg
x*fswtskidrfrlclfnpssrl*r*xyxslc*kxwxlxrxq*sxq*sh*katk*n*ksq
n*kihxrslxfxcfcsx*ipsksrfqisnninlxnxlnxdxfyxxxlxxxlfffflqlvw
kmxiff*k*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11836-1 (Contig-U11836-1Q)
/CSM_Contig/Contig-U11836-1Q.Seq.d
         (1088 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11836-1 (Contig-U11836-1Q) /CSM_Contig/Conti...   993  0.0
Contig-U05196-1 (Contig-U05196-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12452-1 (Contig-U12452-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U11642-1 (Contig-U11642-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U13872-1 (Contig-U13872-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U12470-1 (Contig-U12470-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U12064-1 (Contig-U12064-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U06421-1 (Contig-U06421-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Conti...    30  4.7

>Contig-U11836-1 (Contig-U11836-1Q) /CSM_Contig/Contig-U11836-1Q.Seq.d
          Length = 1088

 Score =  993 bits (501), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatcaaaacaatggtattgataaaaatgaaaaactaaagcaatttggtagagtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaatcaaaacaatggtattgataaaaatgaaaaactaaagcaatttggtagagtttttg 60

                                                                       
Query: 61  gagaatcaccaattcattatgatttatatacggttacatttttaccatcaaatatatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gagaatcaccaattcattatgatttatatacggttacatttttaccatcaaatatatttc 120

                                                                       
Query: 121 aaaanggtgaagttgtattggtaccaagatcaagaggtggtttcacttatgcaaaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaanggtgaagttgtattggtaccaagatcaagaggtggtttcacttatgcaaaaatct 180

                                                                       
Query: 181 atgaagcatcagattcaaatatttgtcataatgatccaacagttcatcatcatgttgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgaagcatcagattcaaatatttgtcataatgatccaacagttcatcatcatgttgttc 240

                                                                       
Query: 241 aataccgtgcggtttatccatcaaatggtaaaagggataatctttacaaggatttatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aataccgtgcggtttatccatcaaatggtaaaagggataatctttacaaggatttatcag 300

                                                                       
Query: 301 caatttacttgggtaaattaataccaatggaaagattaccaccaaatgtcaaaaagtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatttacttgggtaaattaataccaatggaaagattaccaccaaatgtcaaaaagtata 360

                                                                       
Query: 361 cattaacccctccaaatgagagcttttcaatcattggtcaaaaagcatcggtaaganatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cattaacccctccaaatgagagcttttcaatcattggtcaaaaagcatcggtaaganatt 420

                                                                       
Query: 421 tacagggtattttattctcaccattttcaaagtttcatatgaatcaaatcgtattggtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacagggtattttattctcaccattttcaaagtttcatatgaatcaaatcgtattggtac 480

                                      
Query: 481 caagaagtaaaggtggtttcacttatg 507
           |||||||||||||||||||||||||||
Sbjct: 481 caagaagtaaaggtggtttcacttatg 507


 Score =  842 bits (425), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Plus

                                                                        
Query: 527  gcaaaaagaaataaatttaaatcattttcagtttcatcattaaagaaatcattagattat 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  gcaaaaagaaataaatttaaatcattttcagtttcatcattaaagaaatcattagattat 586

                                                                        
Query: 587  tatattttcanaggttatgangtagttgcattcgttccanaatcatttgcatttagaaaa 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  tatattttcanaggttatgangtagttgcattcgttccanaatcatttgcatttagaaaa 646

                                                                        
Query: 647  ccccataatgatccaaaaaagacatttactatgtttgattacaatgatttggcanatgat 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  ccccataatgatccaaaaaagacatttactatgtttgattacaatgatttggcanatgat 706

                                                                        
Query: 707  ttagttggacttcaaaaattgacagattcaggttatgtttgtttaaccccagctcaagat 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ttagttggacttcaaaaattgacagattcaggttatgtttgtttaaccccagctcaagat 766

                                                                        
Query: 767  tatgacgatagntataccnttcattatgctaaaaanaatggngcttgnatcgtcnccaat 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  tatgacgatagntataccnttcattatgctaaaaanaatggngcttgnatcgtcnccaat 826

                                                                        
Query: 827  gatcgntacaatgatcncattgaaaagcaaccaaatgaaattgaaaaagccaaaactaga 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  gatcgntacaatgatcncattgaaaagcaaccaaatgaaattgaaaaagccaaaactaga 886

                                                                        
Query: 887  aaattcattanagatcnttgnatttccnttgcttttgttcgnaatgaattccttccaaat 946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  aaattcattanagatcnttgnatttccnttgcttttgttcgnaatgaattccttccaaat 946

                                                                        
Query: 947  ccagatttcaaatttccaacaacataaatttanaaaatcnattgaacnttgatcnttttt 1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  ccagatttcaaatttccaacaacataaatttanaaaatcnattgaacnttgatcnttttt 1006

                                      
Query: 1007 atcnccncnttctcncaancagncta 1032
            ||||||||||||||||||||||||||
Sbjct: 1007 atcnccncnttctcncaancagncta 1032


>Contig-U05196-1 (Contig-U05196-1Q) /CSM_Contig/Contig-U05196-1Q.Seq.d
          Length = 546

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 aaaaagaaataaatttaaat 548
           ||||||||||||||||||||
Sbjct: 408 aaaaagaaataaatttaaat 389


>Contig-U12452-1 (Contig-U12452-1Q) /CSM_Contig/Contig-U12452-1Q.Seq.d
          Length = 1317

 Score = 38.2 bits (19), Expect = 0.019
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 536  aataaatttaaatcatttt 554
            |||||||||||||||||||
Sbjct: 1187 aataaatttaaatcatttt 1169


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,767
Number of Sequences: 6905
Number of extensions: 13767
Number of successful extensions: 1666
Number of sequences better than 10.0: 172
length of query: 1088
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1072
effective length of database: 5,564,391
effective search space: 5965027152
effective search space used: 5965027152
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11836-1 (Contig-U11836-1Q) /CSM_Contig/Contig-U11836-1Q.Seq.d
         (1088 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ368053) Dictyostelium discoideum cDNA clone:ddc45h05, 5' ...   991   0.0    1
(BJ382546) Dictyostelium discoideum cDNA clone:ddc45h05, 3' ...   765   0.0    1
(BJ344053) Dictyostelium discoideum cDNA clone:dda18d08, 3' ...   618   e-180  2
(AC212805) Populus trichocarpa clone POP033-J14, complete se...    38   0.40   2
(AC182706) Populus trichocarpa clone Pop1-79P19, complete se...    38   0.40   2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   0.56   10
(EK100551) 1092963013965 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.70   1
(ES434257) EST1234463 ESTSYN-L Musa acuminata AAA Group cDNA...    48   0.70   1
(DR414402) gPGC_EST04244 Embryonic gonadal PGC cDNA Library ...    48   0.70   1
(AL499603) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   1.0    7
(BW448452) Ciona intestinalis cDNA, clone:cijv011g12, 5'end,...    32   1.2    3
(CT956033) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   1.4    2
(CR753794) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   1.4    2
(BX192020) Danio rerio genomic clone DKEY-203L20, genomic su...    32   1.9    2
(CU928154) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   1.9    2
(EI733438) CHORI51418E04TR BAC library from the primary brea...    36   2.1    2
(AM850132) Chelonus inanitus bracovirus segment CiV19.5.           40   2.4    4
(EI174433) MUGQ_CH252P178C20Sp6_CN246_078 CHORI-252 Vervet M...    42   2.6    2
(BV679211) OPB03-310 Genome-specific RAPD marker for W genom...    46   2.8    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.8    1
(AP004194) Oryza sativa Japonica Group genomic DNA, chromoso...    46   2.8    1
(AP003760) Oryza sativa Japonica Group genomic DNA, chromoso...    46   2.8    1
(EA685769) Sequence 64648 from patent US 7365185.                  46   2.8    1
(AC191166) Canis Familiaris chromosome 14, clone XX-126F24, ...    46   2.8    1
(AC179150) Strongylocentrotus purpuratus clone R3-4012I10, W...    46   2.8    1
(AC175969) Strongylocentrotus purpuratus clone R3-17F20, WOR...    46   2.8    1
(ED103702) AUAC-aaf72g10.b1 Ascaris suum whole genome shotgu...    46   2.8    1
(AG870266) Oryza sativa Indica Group genomic DNA, BAC end se...    46   2.8    1
(CN061381) Ag2_p31_A16_M13R AG Ambystoma tigrinum tigrinum c...    46   2.8    1
(FG088076) CMRC-FF-IH0-acj-f-03-0-CMRC.r1 Ceratitis capitata...    46   2.8    1
(FG068516) UI-FF-IF0-aaa-f-15-0-UI.r1 Ceratitis capitata emb...    46   2.8    1
(EY641660) CAWW5539.rev CAWW Capitella sp. I ECS-2004 Subtra...    46   2.8    1
(EY623074) CAWW17110.rev CAWW Capitella sp. I ECS-2004 Subtr...    46   2.8    1
(EY615147) CAWW12977.rev CAWW Capitella sp. I ECS-2004 Subtr...    46   2.8    1
(EY611626) CAWW11110.rev CAWW Capitella sp. I ECS-2004 Subtr...    46   2.8    1
(EY608118) CAWU9333.fwd CAWU Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY606320) CAWU8455.fwd CAWU Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY603941) CAWU7281.fwd CAWU Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY603888) CAWU7257.fwd CAWU Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY591149) CAWU22003.fwd CAWU Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY582253) CAWU17326.fwd CAWU Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY578730) CAWU15585.fwd CAWU Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY574481) CAWU13525.fwd CAWU Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY574197) CAWU13385.fwd CAWU Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY570515) CAWU1157.fwd CAWU Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY565824) CAWT9290.fwd CAWT Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY564619) CAWT8361.fwd CAWT Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY562732) CAWT7085.fwd CAWT Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY554661) CAWT2696.fwd CAWT Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY553692) CAWT20481.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY552455) CAWT1952.fwd CAWT Capitella sp. I ECS-2004 Primar...    46   2.8    1
(EY547099) CAWT16322.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY546051) CAWT15761.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY544798) CAWT14758.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY544661) CAWT14689.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY542470) CAWT13619.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY539652) CAWT11550.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY538577) CAWT11018.fwd CAWT Capitella sp. I ECS-2004 Prima...    46   2.8    1
(EY530375) CAPF619.fwd CAPF Capitella sp. I ECS-2004 whole a...    46   2.8    1
(EY525727) CAPF3509.fwd CAPF Capitella sp. I ECS-2004 whole ...    46   2.8    1
(EY515619) CAPF12637.rev CAPF Capitella sp. I ECS-2004 whole...    46   2.8    1
(EY512378) CAPF10747.fwd CAPF Capitella sp. I ECS-2004 whole...    46   2.8    1
(EY337291) CAWY8231.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY335429) CAWY7013.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY334773) CAWY6583.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY334050) CAWY6091.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY333765) CAWY5910.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY331931) CAWY4511.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY331714) CAWY4364.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY331421) CAWY4164.fwd CAWY Helobdella robusta Subtracted E...    46   2.8    1
(EY325626) CAWY11051.fwd CAWY Helobdella robusta Subtracted ...    46   2.8    1
(EY325204) CAWY10780.fwd CAWY Helobdella robusta Subtracted ...    46   2.8    1
(EY322578) CAWX8522.fwd CAWX Helobdella robusta Primary Earl...    46   2.8    1
(EY318451) CAWX6383.fwd CAWX Helobdella robusta Primary Earl...    46   2.8    1
(EY310223) CAWX22030.fwd CAWX Helobdella robusta Primary Ear...    46   2.8    1
(EY306809) CAWX20120.fwd CAWX Helobdella robusta Primary Ear...    46   2.8    1
(EY292633) CAWX10664.fwd CAWX Helobdella robusta Primary Ear...    46   2.8    1
(X82427) C.jejuni binding protein gene.                            46   2.8    1
(DQ493921) Campylobacter jejuni subsp. jejuni 81-176 probabl...    46   2.8    1
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    46   2.8    1
(CP000673) Clostridium kluyveri DSM 555, complete genome.          46   2.8    1
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    46   2.8    1
(CP000025) Campylobacter jejuni RM1221, complete genome.           46   2.8    1
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    46   2.8    1
(AC016734) Homo sapiens BAC clone RP11-391A7 from 2, complet...    32   3.6    8
(DU213095) 1098553222202 CHORI-243 Ovis aries genomic clone ...    32   4.3    3
(DN849767) 14274.2 Stolon Solanum tuberosum cDNA clone 14274...    34   4.7    3
(AL138799) Human DNA sequence from clone RP5-837I24 on chrom...    36   4.9    5
(AC134154) Rattus norvegicus clone CH230-10I12, *** SEQUENCI...    36   5.0    8
(AW870867) ra51g03.y1 Bird-Rao Meloidogyne incognita J2 Melo...    38   5.2    2
(AC206889) MACACA MULATTA BAC clone CH250-299I24 from chromo...    38   5.2    6
(AW828852) ra74h10.y1 Bird-Rao Meloidogyne incognita J2 Melo...    38   5.4    2
(BH148673) ENTPH81TF Entamoeba histolytica Sheared DNA Entam...    32   5.7    3
(AC199760) Medicago truncatula chromosome 2 BAC clone mth2-1...    36   6.4    4
(CR848826) Zebrafish DNA sequence from clone CH211-101L24 in...    38   6.9    4
(CA969251) CcLX06a22b12f1 Carp mixed tissue library 3 Cyprin...    40   7.4    2
(EF206804) Glycine max clone GM_WBb0040F22, *** SEQUENCING I...    36   7.5    5
(BX005256) Zebrafish DNA sequence from clone DKEY-79D12.           40   7.8    5
(AC010999) Homo sapiens chromosome 15 clone RP11-323F24 map ...    36   8.0    4
(AM465521) Vitis vinifera, whole genome shotgun sequence, co...    38   8.2    2

>(BJ368053) Dictyostelium discoideum cDNA clone:ddc45h05, 5' end,
           single read.
          Length = 507

 Score =  991 bits (500), Expect = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Plus


Query: 1   caaatcaaaacaatggtattgataaaaatgaaaaactaaagcaatttggtagagtttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaatcaaaacaatggtattgataaaaatgaaaaactaaagcaatttggtagagtttttg 60


Query: 61  gagaatcaccaattcattatgatttatatacggttacatttttaccatcaaatatatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gagaatcaccaattcattatgatttatatacggttacatttttaccatcaaatatatttc 120


Query: 121 aaaanggtgaagttgtattggtaccaagatcaagaggtggtttcacttatgcaaaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaanggtgaagttgtattggtaccaagatcaagaggtggtttcacttatgcaaaaatct 180


Query: 181 atgaagcatcagattcaaatatttgtcataatgatccaacagttcatcatcatgttgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgaagcatcagattcaaatatttgtcataatgatccaacagttcatcatcatgttgttc 240


Query: 241 aataccgtgcggtttatccatcaaatggtaaaagggataatctttacaaggatttatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aataccgtgcggtttatccatcaaatggtaaaagggataatctttacaaggatttatcag 300


Query: 301 caatttacttgggtaaattaataccaatggaaagattaccaccaaatgtcaaaaagtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatttacttgggtaaattaataccaatggaaagattaccaccaaatgtcaaaaagtata 360


Query: 361 cattaacccctccaaatgagagcttttcaatcattggtcaaaaagcatcggtaaganatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cattaacccctccaaatgagagcttttcaatcattggtcaaaaagcatcggtaaganatt 420


Query: 421 tacagggtattttattctcaccattttcaaagtttcatatgaatcaaatcgtattggtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacagggtattttattctcaccattttcaaagtttcatatgaatcaaatcgtattggtac 480


Query: 481 caagaagtaaaggtggtttcacttat 506
           ||||||||||||||||||||||||||
Sbjct: 481 caagaagtaaaggtggtttcacttat 506

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,146,463,241
Number of extensions: 71467070
Number of successful extensions: 6244115
Number of sequences better than 10.0: 107
Length of query: 1088
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1064
Effective length of database: 97,308,875,965
Effective search space: 103536644026760
Effective search space used: 103536644026760
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11836-1 (Contig-U11836-1Q) /CSM_Contig/Contig-U11836-1Q.Seq.d
         (1088 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844508_264(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.038
(Q5HYM0) RecName: Full=Probable ribonuclease ZC3H12B;          E...    40   0.14
BC140767_1(BC140767|pid:none) Homo sapiens zinc finger CCCH-type...    40   0.14
AL732438_1(AL732438|pid:none) Mouse DNA sequence from clone RP23...    40   0.14
AK299100_1(AK299100|pid:none) Homo sapiens cDNA FLJ55575 complet...    38   0.71
CR812469_5(CR812469|pid:none) Zebrafish DNA sequence from clone ...    38   0.71
AB384628_1(AB384628|pid:none) Synthetic construct DNA, clone: pF...    38   0.71
AK295437_1(AK295437|pid:none) Homo sapiens cDNA FLJ55974 complet...    38   0.71
(Q5DTV4) RecName: Full=Probable ribonuclease ZC3H12C;          E...    38   0.71
AK220416_1(AK220416|pid:none) Mus musculus mRNA for mKIAA1726 pr...    38   0.71
AB051513_1(AB051513|pid:none) Homo sapiens mRNA for KIAA1726 pro...    38   0.71
AJ418367_1(AJ418367|pid:none) Pisum sativum mRNA for nodulation ...    35   4.6
AJ418375_1(AJ418375|pid:none) Pisum sativum mRNA for nodulation ...    35   4.6
(Q6DJS0) RecName: Full=NEDD4-binding protein 1;          Short=N...    35   4.6
AJ418376_1(AJ418376|pid:none) Pisum sativum mRNA for nodulation ...    35   4.6
AF060542_1(AF060542|pid:none) Haemophilus aegyptius HaeIV restri...    35   4.6
CP000407_2110(CP000407|pid:none) Streptococcus suis 05ZYH33, com...    34   7.9
AE014297_2857(AE014297|pid:none) Drosophila melanogaster chromos...    34   7.9
BC059205_1(BC059205|pid:none) Danio rerio nedd4 binding protein ...    34   7.9
AE017261_335(AE017261|pid:none) Picrophilus torridus DSM 9790, c...    34   7.9
(Q1LVK9) RecName: Full=NEDD4-binding protein 1;          Short=N...    34   7.9
(Q7ZXG4) RecName: Full=NEDD4-binding protein 1;          Short=N...    34   7.9

>AL844508_264(AL844508|pid:none) Plasmodium falciparum 3D7 chromosome
            9.  &AL929358_18(AL929358|pid:none)
          Length = 1922

 Score = 42.0 bits (97), Expect = 0.038
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +2

Query: 680  FDYNDLAXDLVGLQKLTDSGYVCLTPAQDYDDXYTXHYAKXNGAXIVXNDRYNDXIEKQP 859
            F++     DL+ LQ L   GY+ + P ++Y      H  K N   +      N  I +
Sbjct: 1831 FEFALKKEDLLYLQHLNILGYLIIEPIENYYHSCIEHIIKSNSCLVT-----NISISQLD 1885

Query: 860  NEIEKAK-TRKFIXDXXISXAFVRNEFLPNPDFKFPT 967
            +       T K +    IS  F+ +EFLPNP+F +P+
Sbjct: 1886 SGFHHLHITSKTLSSYFISYTFLGDEFLPNPNFNWPS 1922

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,491,818,820
Number of extensions: 28519439
Number of successful extensions: 49197
Number of sequences better than 10.0: 22
Number of HSP's gapped: 49170
Number of HSP's successfully gapped: 22
Length of query: 362
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 232
Effective length of database: 630,428,194
Effective search space: 146259341008
Effective search space used: 146259341008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.64  gvh: 0.48  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U11836-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0