Contig-U11835-1 |
Contig ID |
Contig-U11835-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1638 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
7 |
Number of EST |
8 |
Link to clone list |
U11835 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.27 |
Homology vs DNA |
Query= Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Contig-U11835-1Q.Seq.d (1648 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU060285) Dictyostelium discoideum slug cDNA, clone SLA866. 1132 0.0 2 (BJ382536) Dictyostelium discoideum cDNA clone:ddc45f05, 3' ... 285 0.0 6 (AU033470) Dictyostelium discoideum slug cDNA, clone SLA866. 932 0.0 2 (C90116) Dictyostelium discoideum slug cDNA, clone SSI110. 361 0.0 5 (BJ368044) Dictyostelium discoideum cDNA clone:ddc45f05, 5' ... 652 0.0 1 (C93702) Dictyostelium discoideum slug cDNA, clone SSL625. 446 e-171 4 (AU271745) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 361 e-158 3 (AU038401) Dictyostelium discoideum slug cDNA, clone SSH666. 361 e-122 3 (AU073704) Dictyostelium discoideum slug cDNA, clone SSI110. 333 e-118 2 (AU061300) Dictyostelium discoideum slug cDNA, clone SLD709. 125 3e-27 2 (BJ421612) Dictyostelium discoideum cDNA clone:ddv43c07, 5' ... 42 1e-13 4 (BJ395269) Dictyostelium discoideum cDNA clone:dds38c08, 5' ... 54 9e-09 3 (BJ392936) Dictyostelium discoideum cDNA clone:dds29b17, 5' ... 50 1e-07 3 (BJ394625) Dictyostelium discoideum cDNA clone:dds35l20, 5' ... 48 5e-07 3 (AL805940) Mouse DNA sequence from clone RP24-286B19 on chro... 58 0.001 1 (EB326274) CNSN01-F-105027-501 Normalized CNS library (juven... 58 0.001 1 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 0.003 9 (BJ367671) Dictyostelium discoideum cDNA clone:ddc43g14, 5' ... 44 0.003 3 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.004 13 (DR059403) RTNIT1_17_B03.g1_A029 Roots minus nitrogen Pinus ... 40 0.004 2 (BJ422255) Dictyostelium discoideum cDNA clone:ddv45i07, 5' ... 56 0.004 1 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 46 0.012 13 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 38 0.014 9 (AC159975) Mus musculus chromosome 3, clone RP24-204F16, com... 54 0.017 1 (AC154207) Mus musculus BAC clone RP24-377E1 from chromosome... 54 0.017 1 (AC112979) Mus musculus chromosome 3, clone RP24-530C22, com... 54 0.017 1 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 54 0.017 1 (AK078737) Mus musculus adult male cortex cDNA, RIKEN full-l... 54 0.017 1 (BJ424594) Dictyostelium discoideum cDNA clone:ddv52o21, 5' ... 54 0.017 1 (BJ333301) Dictyostelium discoideum cDNA clone:dda42n06, 5' ... 54 0.017 1 (BB580526) Mus musculus adult male cortex cDNA, RIKEN full-l... 54 0.017 1 (AR549749) Sequence 4880 from patent US 6747137. 44 0.025 2 (AC111026) Mus musculus clone RP24-491F3, WORKING DRAFT SEQU... 38 0.026 5 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 0.036 14 (CT025850) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.037 6 (EY332686) CAWY5034.fwd CAWY Helobdella robusta Subtracted E... 42 0.054 2 (EY301451) CAWX15583.fwd CAWX Helobdella robusta Primary Ear... 42 0.054 2 (EY304729) CAWX17980.fwd CAWX Helobdella robusta Primary Ear... 42 0.054 2 (EY311036) CAWX23250.fwd CAWX Helobdella robusta Primary Ear... 42 0.054 2 (EY335465) CAWY7040.fwd CAWY Helobdella robusta Subtracted E... 42 0.054 2 (CU313319) Zebrafish DNA sequence from clone DKEY-182O1 in l... 52 0.069 1 (CR559944) Zebrafish DNA sequence from clone CH211-10D19 in ... 52 0.069 1 (BX004837) Zebrafish DNA sequence from clone CH211-134F7 in ... 52 0.069 1 (AL845521) Mouse DNA sequence from clone RP23-359C5 on chrom... 52 0.069 1 (AC135889) Rattus norvegicus clone CH230-58E2, *** SEQUENCIN... 52 0.069 1 (AC129737) Rattus norvegicus clone CH230-506G1, *** SEQUENCI... 52 0.069 1 (AC111370) Rattus norvegicus clone CH230-79E6, *** SEQUENCIN... 52 0.069 1 (AC201505) Strongylocentrotus purpuratus clone R3-3079J23, W... 52 0.069 1 (AC168821) Strongylocentrotus purpuratus clone R3-13E24, WOR... 52 0.069 1 (AK135559) Mus musculus 12 days embryo female mullerian duct... 52 0.069 1 (DE227408) Trifolium pratense DNA, clone:RCG20053. 52 0.069 1 (CZ532491) SRAA-aac79a11.g1 Strongyloides ratti whole genome... 52 0.069 1 (CZ532313) SRAA-aac78a11.g1 Strongyloides ratti whole genome... 52 0.069 1 (CC170093) ii94h10.g7 WGS-ZmaysF (DH5a methyl filtered) Zea ... 52 0.069 1 (EG757865) EST_ssal_sjb_6484 ssalsjb mixed_tissue Salmo sala... 52 0.069 1 (EC689156) JLE00005635 Jakoba libera Company (STANDARD) Jako... 52 0.069 1 (EB572359) AGENCOURT_51118186 D. virilis EST Drosophila viri... 52 0.069 1 (EB567055) AGENCOURT_51193232 D. virilis EST Drosophila viri... 52 0.069 1 (CU558948) Spc_11YO20 cDNA clone of Developmental Stages Lib... 52 0.069 1 (CJ052250) Mus musculus 12 days embryo female mullerian duct... 52 0.069 1 (BX837786) Arabidopsis thaliana Full-length cDNA 5PRIM end o... 52 0.069 1 (FC612540) CAXS6140.fwd CAXS Lottia gigantea from head, foot... 52 0.069 1 (FC590396) CAXP5990.fwd CAXP Lottia gigantea from head, foot... 52 0.069 1 (FC588030) CAXP4456.fwd CAXP Lottia gigantea from head, foot... 52 0.069 1 (FC577220) CAXP12726.fwd CAXP Lottia gigantea from head, foo... 52 0.069 1 (EY336947) CAWY8019.rev CAWY Helobdella robusta Subtracted E... 52 0.069 1 (EY333026) CAWY541.rev CAWY Helobdella robusta Subtracted Ea... 52 0.069 1 (EY306125) CAWX19748.fwd CAWX Helobdella robusta Primary Ear... 52 0.069 1 (AC135706) Rattus norvegicus clone CH230-451N6, WORKING DRAF... 36 0.070 8 (CB333906) Mg_AFT_10H12_M13F Mesobuthus gibbosus adult femal... 42 0.072 2 (AF362375) Dictyostelium discoideum histidine kinase DhkE (d... 44 0.075 4 (AY184995) Dictyostelium discoideum inositol 5-phosphatase 4... 44 0.10 2 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 0.10 8 (AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 38 0.11 13 (CR382336) Zebrafish DNA sequence from clone CH211-125A6 in ... 50 0.11 7 (AE013599) Drosophila melanogaster chromosome 2R, complete s... 38 0.12 2 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 0.12 7 (AL143133) Anopheles gambiae GSS SP6 end of clone 06M07 of N... 40 0.13 2 (AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 36 0.15 12 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.15 2 (AC007691) Drosophila melanogaster, chromosome 3R, region 82... 40 0.16 2 (AC007531) Drosophila melanogaster, chromosome 3R, region 82... 40 0.16 2 (AC099014) Drosophila melanogaster, chromosome 2R, region 56... 38 0.16 2 (AC009738) Drosophila melanogaster clone BACR02J10, complete... 38 0.16 2 (AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 40 0.16 2 (AC171127) Helobdella robusta clone CH306-1A1, WORKING DRAFT... 36 0.16 2 (AC005148) Drosophila melanogaster DNA sequence (P1s DS05759... 38 0.16 2 (AC020279) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 0.17 2 (CU467867) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.17 7 (AC121291) Mus musculus chromosome 5, clone RP23-170M15, com... 44 0.17 7 (EC821592) SME00008813 esmbsro2 Sawyeria marylandensis cDNA,... 40 0.17 3 (AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 48 0.17 8 (AC014880) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 0.18 2 (AJ320543) Ciona intestinalis partial mRNA for complement co... 34 0.19 2 (CQ607976) Sequence 35734 from Patent WO0171042. 40 0.19 2 (AM482479) Vitis vinifera, whole genome shotgun sequence, co... 48 0.20 3 (DY773103) 5TH_old01_C16 Bicyclus anynana wings - 5TH instar... 34 0.21 2 (AU039450) Dictyostelium discoideum slug cDNA, clone SLH813. 38 0.21 2 (AU039145) Dictyostelium discoideum slug cDNA, clone SSM443. 38 0.21 2 (C84849) Dictyostelium discoideum slug cDNA, clone SSG781. 38 0.21 2
>(AU060285) Dictyostelium discoideum slug cDNA, clone SLA866. Length = 629
Score = 1132 bits (571), Expect(2) = 0.0 Identities = 571/571 (100%) Strand = Plus / Plus
Query: 73 cagaaaccacaactacaacaacaacatcaactacaacaccagtatcaaattcagctatta 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59 cagaaaccacaactacaacaacaacatcaactacaacaccagtatcaaattcagctatta 118
Query: 133 aaagatacattggcaatataaatgattataagaatgcaaactattttaattattatagaa 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 aaagatacattggcaatataaatgattataagaatgcaaactattttaattattatagaa 178
Query: 193 ttttggagaataaatatgactaccttagggacacctttggtttaaaaactttttcaaaca 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 ttttggagaataaatatgactaccttagggacacctttggtttaaaaactttttcaaaca 238
Query: 253 atgaaacattcaaattaattgattttacaattgattcagaaatgaataatacttgtataa 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 atgaaacattcaaattaattgattttacaattgattcagaaatgaataatacttgtataa 298
Query: 313 catcaatttggaatcaaaagtattcaaataattcaagtataccagttgagggtatttata 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 catcaatttggaatcaaaagtattcaaataattcaagtataccagttgagggtatttata 358
Query: 373 aaattccattagcaccatatagtgtcatttcaggattcacagtagaatatcaagataaag 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 aaattccattagcaccatatagtgtcatttcaggattcacagtagaatatcaagataaag 418
Query: 433 ttttcatcggtaaaattaaatcaaaagaaaaagcacaaaatcaatactctgattcaatcg 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 ttttcatcggtaaaattaaatcaaaagaaaaagcacaaaatcaatactctgattcaatcg 478
Query: 493 caagtggtggccaagcattcctcgcagagaaaactcaagatggtcaattctcatttagaa 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 caagtggtggccaagcattcctcgcagagaaaactcaagatggtcaattctcatttagaa 538
Query: 553 tcggtaatttaccaccaaatgaaaatgttacaattcatttaacaattatttcaggagttt 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 tcggtaatttaccaccaaatgaaaatgttacaattcatttaacaattatttcaggagttt 598
Query: 613 gtcctcatttatcaagtttgcaaaattgttt 643 ||||||||||||||||||||||||||||||| Sbjct: 599 gtcctcatttatcaagtttgcaaaattgttt 629
Score = 97.6 bits (49), Expect(2) = 0.0 Identities = 49/49 (100%) Strand = Plus / Plus
Query: 15 gtgcatgaatttatattaaataacaaaatgttacaaagtttaaaaaatg 63 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtgcatgaatttatattaaataacaaaatgttacaaagtttaaaaaatg 49
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,987,563,623 Number of extensions: 134148861 Number of successful extensions: 13793310 Number of sequences better than 10.0: 884 Length of query: 1648 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1624 Effective length of database: 97,308,875,965 Effective search space: 158029614567160 Effective search space used: 158029614567160 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
3 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
1 |