Contig-U11835-1
Contig ID Contig-U11835-1
Contig update 2002.12.18
Contig sequence
>Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Contig-U11835-1Q.Seq.d
ATTTATTTGTTTTTGTGCATGAATTTATATTAAATAACAAAATGTTACAA
AGTTTAAAAAATGTTTTTTTTTCAGAAACCACAACTACAACAACAACATC
AACTACAACACCAGTATCAAATTCAGCTATTAAAAGATACATTGGCAATA
TAAATGATTATAAGAATGCAAACTATTTTAATTATTATAGAATTTTGGAG
AATAAATATGACTACCTTAGGGACACCTTTGGTTTAAAAACTTTTTCAAA
CAATGAAACATTCAAATTAATTGATTTTACAATTGATTCAGAAATGAATA
ATACTTGTATAACATCAATTTGGAATCAAAAGTATTCAAATAATTCAAGT
ATACCAGTTGAGGGTATTTATAAAATTCCATTAGCACCATATAGTGTCAT
TTCAGGATTCACAGTAGAATATCAAGATAAAGTTTTCATCGGTAAAATTA
AATCAAAAGAAAAAGCACAAAATCAATACTCTGATTCAATCGCAAGTGGT
GGCCAAGCATTCCTCGCAGAGAAAACTCAAGATGGTCAATTCTCATTTAG
AATCGGTAATTTACCACCAAATGAAAATGTTACAATTCATTTAACAATTA
TTTCAGGAGTTTGTCCTCATTTATCAAGTTTGCAAAATTGTTTCCATCGT
TTCTTATTCCCAAATTATTCATTTAATTTCCAATTCAATTTAAATATTAA
ATTAACATTACCAATTAAAACTATTGAATTATTATATTATCCAAATAGAG
AAATTAAATTCAAAGAAAACTCTAATAATAAAGAAGCAACTCTTACATTC
TCTT----------CAATAGAGACAGAATAGAAGAGTTAGGAAAAAGCTA
TGGATTAATATCAAAGTATACTTCATATATTGTCACTGCAGCTTCTGAAC
AAGTAACTGAAGAAACAATGAAAACTTTAAATATTATCCAAACACCAACA
ACAACAACAACAACATCACACTCAAATCGTAGAAGAGAAGAAGCAGATCA
TACTATGAATCAAACTTTGCTTAAAAATTGTGCTGTTGTTGATGATTTAT
TTGAAAGTTGTGAAATGTTATCAGAAACCTCAATTAAATTTGAATGTAAT
AGAGTGTACAAAAAAATTCCTTCCTCTTTATCAAAGATTTTTTCATTCTT
TTCATCACTATCCACATCTTCCTCTGTGAGATCAGAAGTTGTATCCAATT
TTGATAATGATATAGAATCAGAGGAAAAGAAAAATAATAGTATTAATAAT
AATAGTGATAGTTTATTAAAATTAATTAAACTTCAAAAAGCCAATGGCTC
ATGGGGTTCCCCATTTGGTGAATTCAAAACTAGGTTTATCAAGGGCACCT
TCAAACATTGATAGCGGTGATATTTGGATCACTTTAATGGTAATCAACAA
GATTCTTAATGATTATCCAACTCAACAATCTCAATATGCCCTTGTAATTC
AAAAGGCTTCAAAATGGGTAAAACAACAATTAACAAGGTTAAACATTCCA
AATCAATATGGCTCATTATTAGCTACTTCAAAATTACATATTTAATATAA
AAAAAAAAAAAAAAAAAAAAAAAAACTTGTAAATCTTTTCTTTTCTTTTC
CAATAAATAAACATTTTAATTATTAAAAAAAAAAATAATAAAAAAAAA

Gap gap included
Contig length 1638
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 7
Number of EST 8
Link to clone list U11835
List of clone(s)

est1=SSI110F,1,611
est2=SLA866E,15,805
est3=CHL719F,76,419
est4=CHL719Z,806,1533
est5=SSI110Z,872,1546
est6=SSL625Z,1091,1640
est7=FC-IC0639Z,1099,1594
est8=SSH666Z,1169,1551
Translated Amino Acid sequence
LFVFVHEFILNNKMLQSLKNVFFSETTTTTTTSTTTPVSNSAIKRYIGNINDYKNANYFN
YYRILENKYDYLRDTFGLKTFSNNETFKLIDFTIDSEMNNTCITSIWNQKYSNNSSIPVE
GIYKIPLAPYSVISGFTVEYQDKVFIGKIKSKEKAQNQYSDSIASGGQAFLAEKTQDGQF
SFRIGNLPPNENVTIHLTIISGVCPHLSSLQNCFHRFLFPNYSFNFQFNLNIKLTLPIKT
IELLYYPNREIKFKENSNNKEATLTFS---

---NRDRIEELGKSYGLISKYTSYIVTAASEQVTEETMKTLNIIQTPTTTTTTSHSNRRR
EEADHTMNQTLLKNCAVVDDLFESCEMLSETSIKFECNRVYKKIPSSLSKIFSFFSSLST
SSSVRSEVVSNFDNDIESEEKKNNSINNNSDSLLKLIKLQKANGSWGSPFGEFKTRFIKG
TFKH**r*yldhfngnqqds**lsnstisicpcnskgfkmgkttinkvkhsksiwliisy
fkityli*kkkkkkkktcksflffsnk*tf*llkkkiikk


Translated Amino Acid sequence (All Frames)
Frame A:
iylflcmnly*itkcykv*kmfffqkpqlqqqhqlqhqyqiqllkdtlai*miirmqtil
iiiefwrinmttlgtplv*klfqtmkhsn*lilqliqk*iilv*hqfgiksiqiiqvyql
rvfikfh*hhivsfqdsq*nikikfssvklnqkkkhkintliqsqvvakhssqrklkmvn
shlesviyhqmkmlqfi*qlfqefvliyqvckivsivsysqiihlisnsi*iln*hyqlk
llnyyiiqieklnskktliikkqllhsl---

---q*rqnrrvrkklwinikvyfiychcsf*tsn*rnnenfkyypntnnnnnnitlks*k
rrsrsyyesnfa*klccc**fi*kl*nvirnln*i*m**svqknsflfikdffilfitih
iflceirsciqf***yrirgkek**y******fikin*tsksqwlmgfpiw*iqn*vyqg
hlqtliavifgsl*w*strflmiiqlnnlnmpl*fkrlqng*nnn*qg*tfqinmahy*l
lqnyifnikkkkkkkknl*ifsflfq*iniliikkknnkkk

Frame B:
ficfca*iyik*qnvtkfkkcfffrnhnynnninyntsikfsy*kihwqyk*l*ecklf*
ll*nfge*i*lp*ghlwfknffkq*niqin*fyn*frne*ylyninleskvfk*fkyts*
gyl*nsisti*chfrihsrisr*sfhr*n*ikrkstksil*fnrkwwpsiprrensrwsi
li*nr*fttk*kcynsfnnyfrslssfikfaklfpsflipklfi*fpiqfky*initn*n
y*iiilsk*rn*iqrkl***rsnsyil---

---NRDRIEELGKSYGLISKYTSYIVTAASEQVTEETMKTLNIIQTPTTTTTTSHSNRRR
EEADHTMNQTLLKNCAVVDDLFESCEMLSETSIKFECNRVYKKIPSSLSKIFSFFSSLST
SSSVRSEVVSNFDNDIESEEKKNNSINNNSDSLLKLIKLQKANGSWGSPFGEFKTRFIKG
TFKH**r*yldhfngnqqds**lsnstisicpcnskgfkmgkttinkvkhsksiwliisy
fkityli*kkkkkkkktcksflffsnk*tf*llkkkiikk

Frame C:
LFVFVHEFILNNKMLQSLKNVFFSETTTTTTTSTTTPVSNSAIKRYIGNINDYKNANYFN
YYRILENKYDYLRDTFGLKTFSNNETFKLIDFTIDSEMNNTCITSIWNQKYSNNSSIPVE
GIYKIPLAPYSVISGFTVEYQDKVFIGKIKSKEKAQNQYSDSIASGGQAFLAEKTQDGQF
SFRIGNLPPNENVTIHLTIISGVCPHLSSLQNCFHRFLFPNYSFNFQFNLNIKLTLPIKT
IELLYYPNREIKFKENSNNKEATLTFS---

---iete*ks*ekamd*yqsilhilslqllnk*lkkq*kl*ilskhqqqqqqhhtqivee
kkqiil*iklclkivlllmiylkvvkcyqkpqlnlnviectkkflplyqrffhsfhhyph
lpl*dqklypilimi*nqrkrkiivliiivivy*n*lnfkkpmahgvphlvnsklglsra
psnidsgdiwitlmvinkilndyptqqsqyalviqkaskwvkqqltrlnipnqygsllat
sklhi*ykkkkkkkkklvnlffsfpinkhfny*kkk**kk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11835-1 (Contig-U11835-1Q)
/CSM_Contig/Contig-U11835-1Q.Seq.d
(1648 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Conti... 1294 0.0
Contig-U13662-1 (Contig-U13662-1Q) /CSM_Contig/Conti... 56 1e-07
Contig-U14601-1 (Contig-U14601-1Q) /CSM_Contig/Conti... 50 8e-06
Contig-U11503-1 (Contig-U11503-1Q) /CSM_Contig/Conti... 50 8e-06
Contig-U01715-1 (Contig-U01715-1Q) /CSM_Contig/Conti... 50 8e-06
Contig-U13269-1 (Contig-U13269-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U03116-1 (Contig-U03116-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U11587-1 (Contig-U11587-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U09872-1 (Contig-U09872-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Conti... 46 1e-04

>Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Contig-U11835-1Q.Seq.d
Length = 1648

Score = 1294 bits (653), Expect = 0.0
Identities = 671/680 (98%)
Strand = Plus / Plus


Query: 1 atttatttgtttttgtgcatgaatttatattaaataacaaaatgttacaaagtttaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttatttgtttttgtgcatgaatttatattaaataacaaaatgttacaaagtttaaaaa 60


Query: 61 atgnnnnnnnnncagaaaccacaactacaacaacaacatcaactacaacaccagtatcaa 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtttttttttcagaaaccacaactacaacaacaacatcaactacaacaccagtatcaa 120


Query: 121 attcagctattaaaagatacattggcaatataaatgattataagaatgcaaactatttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcagctattaaaagatacattggcaatataaatgattataagaatgcaaactatttta 180


Query: 181 attattatagaattttggagaataaatatgactaccttagggacacctttggtttaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attattatagaattttggagaataaatatgactaccttagggacacctttggtttaaaaa 240


Query: 241 ctttttcaaacaatgaaacattcaaattaattgattttacaattgattcagaaatgaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttttcaaacaatgaaacattcaaattaattgattttacaattgattcagaaatgaata 300


Query: 301 atacttgtataacatcaatttggaatcaaaagtattcaaataattcaagtataccagttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atacttgtataacatcaatttggaatcaaaagtattcaaataattcaagtataccagttg 360


Query: 361 agggtatttataaaattccattagcaccatatagtgtcatttcaggattcacagtagaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agggtatttataaaattccattagcaccatatagtgtcatttcaggattcacagtagaat 420


Query: 421 atcaagataaagttttcatcggtaaaattaaatcaaaagaaaaagcacaaaatcaatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaagataaagttttcatcggtaaaattaaatcaaaagaaaaagcacaaaatcaatact 480


Query: 481 ctgattcaatcgcaagtggtggccaagcattcctcgcagagaaaactcaagatggtcaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctgattcaatcgcaagtggtggccaagcattcctcgcagagaaaactcaagatggtcaat 540


Query: 541 tctcatttagaatcggtaatttaccaccaaatgaaaatgttacaattcatttaacaatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctcatttagaatcggtaatttaccaccaaatgaaaatgttacaattcatttaacaatta 600


Query: 601 tttcaggagtttgtcctcatttatcaagtttgcaaaattgtttccatcgtttcttattcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttcaggagtttgtcctcatttatcaagtttgcaaaattgtttccatcgtttcttattcc 660


Query: 661 caaattattcatttaatttc 680
||||||||||||||||||||
Sbjct: 661 caaattattcatttaatttc 680


Score = 1114 bits (562), Expect = 0.0
Identities = 576/583 (98%)
Strand = Plus / Plus


Query: 966 tcacactcaaatcgtagaagagaagaagcagatcatactatgaatcaaactttgcttaaa 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tcacactcaaatcgtagaagagaagaagcagatcatactatgaatcaaactttgcttaaa 1025


Query: 1026 aattgtgctgttgttgatgatttatttgaaagttgtgaaatgttatcagaaacctcaatt 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aattgtgctgttgttgatgatttatttgaaagttgtgaaatgttatcagaaacctcaatt 1085


Query: 1086 aaatttgaatgtaatagagtgtacnnnnnnnttccttcctctttatcaaagattttttca 1145
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1086 aaatttgaatgtaatagagtgtacaaaaaaattccttcctctttatcaaagattttttca 1145


Query: 1146 ttcttttcatcactatccacatcttcctctgtgagatcagaagttgtatccaattttgat 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ttcttttcatcactatccacatcttcctctgtgagatcagaagttgtatccaattttgat 1205


Query: 1206 aatgatatagaatcagaggaaaagaaaaataatagtattaataataatagtgatagttta 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 aatgatatagaatcagaggaaaagaaaaataatagtattaataataatagtgatagttta 1265


Query: 1266 ttaaaattaattaaacttcaaaaagccaatggctcatggggttccccatttggtgaattc 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 ttaaaattaattaaacttcaaaaagccaatggctcatggggttccccatttggtgaattc 1325


Query: 1326 aaaactaggtttatcaagggcaccttcaaacattgatagcggtgatatttggatcacttt 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 aaaactaggtttatcaagggcaccttcaaacattgatagcggtgatatttggatcacttt 1385


Query: 1386 aatggtaatcaacaagattcttaatgattatccaactcaacaatctcaatatgcccttgt 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 aatggtaatcaacaagattcttaatgattatccaactcaacaatctcaatatgcccttgt 1445


Query: 1446 aattcaaaaggcttcaaaatgggtaaaacaacaattaacaaggttaaacattccaaatca 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1446 aattcaaaaggcttcaaaatgggtaaaacaacaattaacaaggttaaacattccaaatca 1505


Query: 1506 atatggctcattattagctacttcaaaattacatatttaatat 1548
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 atatggctcattattagctacttcaaaattacatatttaatat 1548


Score = 333 bits (168), Expect = 4e-91
Identities = 198/198 (100%)
Strand = Plus / Plus


Query: 741 ccaaatagagaaattaaattcaaagaaaactctaataataaagaagcaactcttacattc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaaatagagaaattaaattcaaagaaaactctaataataaagaagcaactcttacattc 800


Query: 801 tcttnnnnnnnnnncaatagagacagaatagaagagttaggaaaaagctatggattaata 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcttnnnnnnnnnncaatagagacagaatagaagagttaggaaaaagctatggattaata 860


Query: 861 tcaaagtatacttcatatattgtcactgcagcttctgaacaagtaactgaagaaacaatg 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcaaagtatacttcatatattgtcactgcagcttctgaacaagtaactgaagaaacaatg 920


Query: 921 aaaactttaaatattatc 938
||||||||||||||||||
Sbjct: 921 aaaactttaaatattatc 938


Score = 97.6 bits (49), Expect = 4e-20
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 1576 cttgtaaatcttttcttttcttttccaataaataaacattttaattatt 1624
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 cttgtaaatcttttcttttcttttccaataaataaacattttaattatt 1624


Score = 34.2 bits (17), Expect = 0.46
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 81 acaactacaacaacaacatca 101
||||| |||||||||||||||
Sbjct: 948 acaacaacaacaacaacatca 968


>Contig-U13662-1 (Contig-U13662-1Q) /CSM_Contig/Contig-U13662-1Q.Seq.d
Length = 502

Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus


Query: 75 gaaaccacaactacaacaacaacatcaactacaaca 110
||||| ||||||||||||||||||||||| ||||||
Sbjct: 268 gaaacaacaactacaacaacaacatcaacaacaaca 303


Score = 36.2 bits (18), Expect = 0.12
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 1233 aataatagtattaataataata 1254
|||||||||| |||||||||||
Sbjct: 238 aataatagtaataataataata 259


>Contig-U14601-1 (Contig-U14601-1Q) /CSM_Contig/Contig-U14601-1Q.Seq.d
Length = 610

Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 77 aaccacaactacaacaacaacatca 101
|||||||||||||||||||||||||
Sbjct: 309 aaccacaactacaacaacaacatca 333


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,473
Number of Sequences: 6905
Number of extensions: 46473
Number of successful extensions: 12476
Number of sequences better than 10.0: 1468
length of query: 1648
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1632
effective length of database: 5,564,391
effective search space: 9081086112
effective search space used: 9081086112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA
Query= Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Contig-U11835-1Q.Seq.d
(1648 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060285) Dictyostelium discoideum slug cDNA, clone SLA866. 1132 0.0 2
(BJ382536) Dictyostelium discoideum cDNA clone:ddc45f05, 3' ... 285 0.0 6
(AU033470) Dictyostelium discoideum slug cDNA, clone SLA866. 932 0.0 2
(C90116) Dictyostelium discoideum slug cDNA, clone SSI110. 361 0.0 5
(BJ368044) Dictyostelium discoideum cDNA clone:ddc45f05, 5' ... 652 0.0 1
(C93702) Dictyostelium discoideum slug cDNA, clone SSL625. 446 e-171 4
(AU271745) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 361 e-158 3
(AU038401) Dictyostelium discoideum slug cDNA, clone SSH666. 361 e-122 3
(AU073704) Dictyostelium discoideum slug cDNA, clone SSI110. 333 e-118 2
(AU061300) Dictyostelium discoideum slug cDNA, clone SLD709. 125 3e-27 2
(BJ421612) Dictyostelium discoideum cDNA clone:ddv43c07, 5' ... 42 1e-13 4
(BJ395269) Dictyostelium discoideum cDNA clone:dds38c08, 5' ... 54 9e-09 3
(BJ392936) Dictyostelium discoideum cDNA clone:dds29b17, 5' ... 50 1e-07 3
(BJ394625) Dictyostelium discoideum cDNA clone:dds35l20, 5' ... 48 5e-07 3
(AL805940) Mouse DNA sequence from clone RP24-286B19 on chro... 58 0.001 1
(EB326274) CNSN01-F-105027-501 Normalized CNS library (juven... 58 0.001 1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 0.003 9
(BJ367671) Dictyostelium discoideum cDNA clone:ddc43g14, 5' ... 44 0.003 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.004 13
(DR059403) RTNIT1_17_B03.g1_A029 Roots minus nitrogen Pinus ... 40 0.004 2
(BJ422255) Dictyostelium discoideum cDNA clone:ddv45i07, 5' ... 56 0.004 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 46 0.012 13
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 38 0.014 9
(AC159975) Mus musculus chromosome 3, clone RP24-204F16, com... 54 0.017 1
(AC154207) Mus musculus BAC clone RP24-377E1 from chromosome... 54 0.017 1
(AC112979) Mus musculus chromosome 3, clone RP24-530C22, com... 54 0.017 1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 54 0.017 1
(AK078737) Mus musculus adult male cortex cDNA, RIKEN full-l... 54 0.017 1
(BJ424594) Dictyostelium discoideum cDNA clone:ddv52o21, 5' ... 54 0.017 1
(BJ333301) Dictyostelium discoideum cDNA clone:dda42n06, 5' ... 54 0.017 1
(BB580526) Mus musculus adult male cortex cDNA, RIKEN full-l... 54 0.017 1
(AR549749) Sequence 4880 from patent US 6747137. 44 0.025 2
(AC111026) Mus musculus clone RP24-491F3, WORKING DRAFT SEQU... 38 0.026 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 0.036 14
(CT025850) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.037 6
(EY332686) CAWY5034.fwd CAWY Helobdella robusta Subtracted E... 42 0.054 2
(EY301451) CAWX15583.fwd CAWX Helobdella robusta Primary Ear... 42 0.054 2
(EY304729) CAWX17980.fwd CAWX Helobdella robusta Primary Ear... 42 0.054 2
(EY311036) CAWX23250.fwd CAWX Helobdella robusta Primary Ear... 42 0.054 2
(EY335465) CAWY7040.fwd CAWY Helobdella robusta Subtracted E... 42 0.054 2
(CU313319) Zebrafish DNA sequence from clone DKEY-182O1 in l... 52 0.069 1
(CR559944) Zebrafish DNA sequence from clone CH211-10D19 in ... 52 0.069 1
(BX004837) Zebrafish DNA sequence from clone CH211-134F7 in ... 52 0.069 1
(AL845521) Mouse DNA sequence from clone RP23-359C5 on chrom... 52 0.069 1
(AC135889) Rattus norvegicus clone CH230-58E2, *** SEQUENCIN... 52 0.069 1
(AC129737) Rattus norvegicus clone CH230-506G1, *** SEQUENCI... 52 0.069 1
(AC111370) Rattus norvegicus clone CH230-79E6, *** SEQUENCIN... 52 0.069 1
(AC201505) Strongylocentrotus purpuratus clone R3-3079J23, W... 52 0.069 1
(AC168821) Strongylocentrotus purpuratus clone R3-13E24, WOR... 52 0.069 1
(AK135559) Mus musculus 12 days embryo female mullerian duct... 52 0.069 1
(DE227408) Trifolium pratense DNA, clone:RCG20053. 52 0.069 1
(CZ532491) SRAA-aac79a11.g1 Strongyloides ratti whole genome... 52 0.069 1
(CZ532313) SRAA-aac78a11.g1 Strongyloides ratti whole genome... 52 0.069 1
(CC170093) ii94h10.g7 WGS-ZmaysF (DH5a methyl filtered) Zea ... 52 0.069 1
(EG757865) EST_ssal_sjb_6484 ssalsjb mixed_tissue Salmo sala... 52 0.069 1
(EC689156) JLE00005635 Jakoba libera Company (STANDARD) Jako... 52 0.069 1
(EB572359) AGENCOURT_51118186 D. virilis EST Drosophila viri... 52 0.069 1
(EB567055) AGENCOURT_51193232 D. virilis EST Drosophila viri... 52 0.069 1
(CU558948) Spc_11YO20 cDNA clone of Developmental Stages Lib... 52 0.069 1
(CJ052250) Mus musculus 12 days embryo female mullerian duct... 52 0.069 1
(BX837786) Arabidopsis thaliana Full-length cDNA 5PRIM end o... 52 0.069 1
(FC612540) CAXS6140.fwd CAXS Lottia gigantea from head, foot... 52 0.069 1
(FC590396) CAXP5990.fwd CAXP Lottia gigantea from head, foot... 52 0.069 1
(FC588030) CAXP4456.fwd CAXP Lottia gigantea from head, foot... 52 0.069 1
(FC577220) CAXP12726.fwd CAXP Lottia gigantea from head, foo... 52 0.069 1
(EY336947) CAWY8019.rev CAWY Helobdella robusta Subtracted E... 52 0.069 1
(EY333026) CAWY541.rev CAWY Helobdella robusta Subtracted Ea... 52 0.069 1
(EY306125) CAWX19748.fwd CAWX Helobdella robusta Primary Ear... 52 0.069 1
(AC135706) Rattus norvegicus clone CH230-451N6, WORKING DRAF... 36 0.070 8
(CB333906) Mg_AFT_10H12_M13F Mesobuthus gibbosus adult femal... 42 0.072 2
(AF362375) Dictyostelium discoideum histidine kinase DhkE (d... 44 0.075 4
(AY184995) Dictyostelium discoideum inositol 5-phosphatase 4... 44 0.10 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 0.10 8
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 38 0.11 13
(CR382336) Zebrafish DNA sequence from clone CH211-125A6 in ... 50 0.11 7
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 38 0.12 2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 0.12 7
(AL143133) Anopheles gambiae GSS SP6 end of clone 06M07 of N... 40 0.13 2
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 36 0.15 12
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.15 2
(AC007691) Drosophila melanogaster, chromosome 3R, region 82... 40 0.16 2
(AC007531) Drosophila melanogaster, chromosome 3R, region 82... 40 0.16 2
(AC099014) Drosophila melanogaster, chromosome 2R, region 56... 38 0.16 2
(AC009738) Drosophila melanogaster clone BACR02J10, complete... 38 0.16 2
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 40 0.16 2
(AC171127) Helobdella robusta clone CH306-1A1, WORKING DRAFT... 36 0.16 2
(AC005148) Drosophila melanogaster DNA sequence (P1s DS05759... 38 0.16 2
(AC020279) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 0.17 2
(CU467867) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.17 7
(AC121291) Mus musculus chromosome 5, clone RP23-170M15, com... 44 0.17 7
(EC821592) SME00008813 esmbsro2 Sawyeria marylandensis cDNA,... 40 0.17 3
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 48 0.17 8
(AC014880) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 0.18 2
(AJ320543) Ciona intestinalis partial mRNA for complement co... 34 0.19 2
(CQ607976) Sequence 35734 from Patent WO0171042. 40 0.19 2
(AM482479) Vitis vinifera, whole genome shotgun sequence, co... 48 0.20 3
(DY773103) 5TH_old01_C16 Bicyclus anynana wings - 5TH instar... 34 0.21 2
(AU039450) Dictyostelium discoideum slug cDNA, clone SLH813. 38 0.21 2
(AU039145) Dictyostelium discoideum slug cDNA, clone SSM443. 38 0.21 2
(C84849) Dictyostelium discoideum slug cDNA, clone SSG781. 38 0.21 2

>(AU060285) Dictyostelium discoideum slug cDNA, clone SLA866.
Length = 629

Score = 1132 bits (571), Expect(2) = 0.0
Identities = 571/571 (100%)
Strand = Plus / Plus


Query: 73 cagaaaccacaactacaacaacaacatcaactacaacaccagtatcaaattcagctatta 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 cagaaaccacaactacaacaacaacatcaactacaacaccagtatcaaattcagctatta 118


Query: 133 aaagatacattggcaatataaatgattataagaatgcaaactattttaattattatagaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaagatacattggcaatataaatgattataagaatgcaaactattttaattattatagaa 178


Query: 193 ttttggagaataaatatgactaccttagggacacctttggtttaaaaactttttcaaaca 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttttggagaataaatatgactaccttagggacacctttggtttaaaaactttttcaaaca 238


Query: 253 atgaaacattcaaattaattgattttacaattgattcagaaatgaataatacttgtataa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atgaaacattcaaattaattgattttacaattgattcagaaatgaataatacttgtataa 298


Query: 313 catcaatttggaatcaaaagtattcaaataattcaagtataccagttgagggtatttata 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 catcaatttggaatcaaaagtattcaaataattcaagtataccagttgagggtatttata 358


Query: 373 aaattccattagcaccatatagtgtcatttcaggattcacagtagaatatcaagataaag 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaattccattagcaccatatagtgtcatttcaggattcacagtagaatatcaagataaag 418


Query: 433 ttttcatcggtaaaattaaatcaaaagaaaaagcacaaaatcaatactctgattcaatcg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttttcatcggtaaaattaaatcaaaagaaaaagcacaaaatcaatactctgattcaatcg 478


Query: 493 caagtggtggccaagcattcctcgcagagaaaactcaagatggtcaattctcatttagaa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caagtggtggccaagcattcctcgcagagaaaactcaagatggtcaattctcatttagaa 538


Query: 553 tcggtaatttaccaccaaatgaaaatgttacaattcatttaacaattatttcaggagttt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tcggtaatttaccaccaaatgaaaatgttacaattcatttaacaattatttcaggagttt 598


Query: 613 gtcctcatttatcaagtttgcaaaattgttt 643
|||||||||||||||||||||||||||||||
Sbjct: 599 gtcctcatttatcaagtttgcaaaattgttt 629

Score = 97.6 bits (49), Expect(2) = 0.0
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 15 gtgcatgaatttatattaaataacaaaatgttacaaagtttaaaaaatg 63
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgcatgaatttatattaaataacaaaatgttacaaagtttaaaaaatg 49

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,987,563,623
Number of extensions: 134148861
Number of successful extensions: 13793310
Number of sequences better than 10.0: 884
Length of query: 1648
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1624
Effective length of database: 97,308,875,965
Effective search space: 158029614567160
Effective search space used: 158029614567160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Contig-U11835-1Q.Seq.d
(1648 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AK304399_1(AK304399|pid:none) Homo sapiens cDNA FLJ61556 complet... 73 3e-11
(Q9UKK3) RecName: Full=Poly [ADP-ribose] polymerase 4; ... 73 3e-11
AF057160_1(AF057160|pid:none) Homo sapiens putative poly(ADP-rib... 73 3e-11
AB384443_1(AB384443|pid:none) Synthetic construct DNA, clone: pF... 73 3e-11
AK172907_1(AK172907|pid:none) Mus musculus mRNA for mKIAA0177 pr... 71 1e-10
BX294150_20(BX294150|pid:none) Rhodopirellula baltica SH 1 compl... 65 6e-09
AM746676_2133(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 65 7e-09
CP000469_1794(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 62 8e-08
AK019914_1(AK019914|pid:none) Mus musculus adult male pituitary ... 61 1e-07
(Q99KC8) RecName: Full=Loss of heterozygosity 11 chromosomal reg... 61 1e-07
AY366502_1(AY366502|pid:none) Mus musculus BCSC1 (Bcsc1) mRNA, c... 61 1e-07
BC080948_1(BC080948|pid:none) Xenopus tropicalis loh11cr2a prote... 61 1e-07
CP000931_1964(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 60 2e-07
CP000113_756(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 59 7e-07
AE016796_749(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 59 7e-07
BA000038_1267(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, ch... 58 9e-07
CP000854_1181(CP000854|pid:none) Mycobacterium marinum M, comple... 57 2e-06
CP000325_1199(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 57 2e-06
CP000854_3489(CP000854|pid:none) Mycobacterium marinum M, comple... 56 4e-06
CP000325_2296(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 56 4e-06
CP001281_1662(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 55 8e-06
CP000507_1996(CP000507|pid:none) Shewanella amazonensis SB2B, co... 55 1e-05
AK295247_1(AK295247|pid:none) Homo sapiens cDNA FLJ55206 complet... 54 1e-05
AY366501_3(AY366501|pid:none) Homo sapiens clone BAC44d21 BCSC-1... 54 1e-05
AY366501_2(AY366501|pid:none) Homo sapiens clone BAC44d21 BCSC-1... 54 1e-05
CP000252_17(CP000252|pid:none) Syntrophus aciditrophicus SB, com... 54 2e-05
CP000155_87(CP000155|pid:none) Hahella chejuensis KCTC 2396, com... 54 2e-05
CP000514_3645(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 52 5e-05
BC095235_1(BC095235|pid:none) Danio rerio zgc:110377, mRNA (cDNA... 52 5e-05
CP001635_22(CP001635|pid:none) Variovorax paradoxus S110 chromos... 52 6e-05
CP000774_2286(CP000774|pid:none) Parvibaculum lavamentivorans DS... 52 6e-05
CP000555_140(CP000555|pid:none) Methylibium petroleiphilum PM1, ... 52 6e-05
CP000478_3656(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 51 1e-04
CP000763_23(CP000763|pid:none) Ochrobactrum anthropi ATCC 49188 ... 50 2e-04
BC081656_1(BC081656|pid:none) Danio rerio zgc:92481, mRNA (cDNA ... 50 2e-04
CP000448_2005(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 50 3e-04
CP000943_4870(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 49 4e-04
AK049098_1(AK049098|pid:none) Mus musculus 0 day neonate cerebel... 49 4e-04
AM286690_46(AM286690|pid:none) Alcanivorax borkumensis SK2, comp... 49 5e-04
CP001029_1366(CP001029|pid:none) Methylobacterium populi BJ001, ... 47 0.002
CP000388_3889(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 45 0.006
CP001349_5311(CP001349|pid:none) Methylobacterium nodulans ORS 2... 45 0.006
CP000606_1786(CP000606|pid:none) Shewanella loihica PV-4, comple... 44 0.017
AL845287_8(AL845287|pid:none) Zebrafish DNA sequence from clone ... 44 0.023
BC098981_1(BC098981|pid:none) Xenopus laevis hypothetical LOC495... 43 0.030
AM920431_866(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 43 0.030
BC100665_1(BC100665|pid:none) Xenopus tropicalis hypothetical pr... 43 0.039
BC034341_1(BC034341|pid:none) Mus musculus inter-alpha trypsin i... 42 0.050
(A9Z1V5) RecName: Full=von Willebrand factor A domain-containing... 42 0.050
(Q61703) RecName: Full=Inter-alpha-trypsin inhibitor heavy chain... 42 0.050
AK149533_1(AK149533|pid:none) Mus musculus adult male liver tumo... 42 0.050
BC057376_1(BC057376|pid:none) Mus musculus RIKEN cDNA 4931403E03... 42 0.086
FM204883_1920(FM204883|pid:none) Streptococcus equi subsp. equi ... 41 0.11
FN357542_22(FN357542|pid:none) Schistosoma mansoni genome sequen... 40 0.25
FN357542_21(FN357542|pid:none) Schistosoma mansoni genome sequen... 40 0.25
CP000814_427(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 40 0.25
AL111168_423(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 40 0.33
(P97279) RecName: Full=Inter-alpha-trypsin inhibitor heavy chain... 40 0.33
CP000768_1234(CP000768|pid:none) Campylobacter jejuni subsp. doy... 40 0.33
AK222757_1(AK222757|pid:none) Homo sapiens mRNA for inter-alpha ... 39 0.43
CP001634_414(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 39 0.56
CP001129_1715(CP001129|pid:none) Streptococcus equi subsp. zooep... 39 0.73
AB035707_1(AB035707|pid:none) Oryctolagus cuniculus ITI HC1 mRNA... 38 0.95
EU741623_1(EU741623|pid:none) Gallus gallus inter-alpha inhibito... 38 0.95
BT026189_1(BT026189|pid:none) Bos taurus inter-alpha (globulin) ... 38 1.2
(P56652) RecName: Full=Inter-alpha-trypsin inhibitor heavy chain... 38 1.2
FN318927_1(FN318927|pid:none) Schistosoma japonicum isolate Anhu... 37 1.6
BC092555_1(BC092555|pid:none) Xenopus tropicalis hypothetical pr... 37 1.6
CP000155_1434(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 37 2.1
S30350(S30350;S34123;S02141;D34245;A39079;S50133;B53642;)inter-a... 37 2.1
(Q06033) RecName: Full=Inter-alpha-trypsin inhibitor heavy chain... 37 2.1
X67055_1(X67055|pid:none) H.sapiens mRNA for inter-alpha-trypsin... 37 2.1
AK298450_1(AK298450|pid:none) Homo sapiens cDNA FLJ60769 complet... 37 2.1
X99854_1(X99854|pid:none) H.sapiens ITIH3 gene. 37 2.1
AL844508_215(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.1
(Q61704) RecName: Full=Inter-alpha-trypsin inhibitor heavy chain... 37 2.8
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ... 37 2.8
BC015276_1(BC015276|pid:none) Mus musculus inter-alpha trypsin i... 37 2.8
S54355(S54355) inter-alpha-trypsin inhibitor heavy chain 3 precu... 37 2.8
BC136609_1(BC136609|pid:none) Homo sapiens von Willebrand factor... 37 2.8
CP000940_7(CP000940|pid:none) Clostridium botulinum B1 str. Okra... 37 2.8
(Q6UXX5) RecName: Full=Inter-alpha-trypsin inhibitor heavy chain... 36 3.6
JC5576(JC5576;PC4486)inter-alpha-trypsin inhibitor heavy chain 3... 36 3.6
(Q5UPU1) RecName: Full=Uncharacterized protein R253; &AY653733_... 36 3.6
AE014187_720(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 36 3.6
AP008217_1224(AP008217|pid:none) Oryza sativa (japonica cultivar... 36 3.6
AB050594_1(AB050594|pid:none) Oryctolagus cuniculus ITI-HC4 mRNA... 36 4.7
AK048916_1(AK048916|pid:none) Mus musculus 0 day neonate cerebel... 36 4.7
EU972117_1(EU972117|pid:none) Zea mays clone 375382 signal recog... 36 4.7
CP000876_145(CP000876|pid:none) Herpetosiphon aurantiacus ATCC 2... 36 4.7
BC045924_1(BC045924|pid:none) Danio rerio inter-alpha (globulin)... 35 6.2
FN318925_1(FN318925|pid:none) Schistosoma japonicum isolate Anhu... 35 6.2
AK141799_1(AK141799|pid:none) Mus musculus 12 days embryo spinal... 35 6.2
(Q3UR50) RecName: Full=von Willebrand factor A domain-containing... 35 6.2
EF494740_11(EF494740|pid:none) Blastocystis sp. NandII mitochond... 35 8.1

>AK304399_1(AK304399|pid:none) Homo sapiens cDNA FLJ61556 complete
cds, highly similar to Poly (ADP-ribose) polymerase 4
(EC 2.4.2.30).
Length = 1005

Score = 72.8 bits (177), Expect = 3e-11
Identities = 42/125 (33%), Positives = 63/125 (50%)
Frame = +3

Query: 231 GLKTFSNNETFKLIDFTIDSEMNNTCITSIWNQKYSNNSSIPVEGIYKIPLAPYSVISGF 410
GL+ S N L D I + +T I Q Y+N S +P+E Y PL + + GF
Sbjct: 612 GLQDASGN-LVPLEDVHIKGRIIDTVAQVIVFQTYTNKSHVPIEAKYIFPLDDKAAVCGF 670

Query: 411 TVEYQDKVFIGKIKSKEKAQNQYSDSIASGGQAFLAEKTQDGQFSFRIGNLPPNENVTIH 590
K +G+IK KE+AQ +Y +++ G A+L + F+ +GNLPP V I
Sbjct: 671 EAFINGKHIVGEIKEKEEAQQEYLEAVTQGHGAYLMSQDAPDVFTVSVGNLPPKAKVLIK 730

Query: 591 LTIIS 605
+T I+
Sbjct: 731 ITYIT 735

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,066,740,572
Number of extensions: 35834333
Number of successful extensions: 90318
Number of sequences better than 10.0: 95
Number of HSP's gapped: 90253
Number of HSP's successfully gapped: 96
Length of query: 549
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 415
Effective length of database: 617,481,958
Effective search space: 256255012570
Effective search space used: 256255012570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.43 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.11
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U11835-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1