Contig-U11830-1
Contig ID Contig-U11830-1
Contig update 2002.12.18
Contig sequence
>Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d
ATTTAGCCATGTTAATATTAATTCATAAAGATATTTGAACATTTATTTAT
TTATTTATTTATTTTATTANGACAGAAACTTTTTTGTAAAAAAAAAATAT
TATTCAAAATAAAAAAAAAAAAAANTAAAAAANTAAAAAAAAAAAAAAAA
AAANTTNGGGGGGGGNAAAAAAAACCCCCCCCCCCNCNNNNNNNNNCNNN
ANNNCNAAAANNAACCNNAAAAAAAANNNNNNNNN----------GTTAT
TATATATGTTTTATCAAGTCAAAGTTTATCAAGTAATAATAATAATAACT
CAACACCAACAATTGAACCAAATTATGTAACAACTGTTGATATTCATACA
TTTATAACATCACATAAAGTATTATTAAATTTAAATAATAATTTAATACC
TGATAGAAATAGTGTTACAAATTGTCTTTCACATCAACACCGTATATTTA
AATCTGGTAAAGAAATTTATGGTTGCGGTTATTGGTCACTCAAAGATCCA
TATGAAGATCCTTGGAATGAATCAATTGATTCAAATTCTTCAACCCCATC
ATCATCACCTTTAAATCCTTTAATTTGTGGTGCAATCACTAATCGTGGAA
ATATTTGTAAGAAACCATTAAATAAATGTTCATTTCATTCAAATAAACCT
GGTATAAAAAATATCTCATCAATTACGACGATGACAAATAATAATACAAA
CAGCTTTTATTTAATTCAAAAACAGCAACAACAACAACTTCAACATCAAC
AACAACAGCAACAGCAACAACAAAATAATAGTAATAGTAATAATGAAGAT
GAATTTTTCAGTGAAAGTGAAAGTGAAAGTGAAAGTGATTTTTATTNNNN
TGATGTTGATAATAATGGTAATTTTGGAAGTAGTAGTAGTAGAGCAAGTA
GTAAAAGTAATGGTAGTAGCCACAACAACAACAACAACAACAACAACAAC
AACAAACAAGTGAACAACAAC

Gap gap included
Contig length 961
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 3
Link to clone list U11830
List of clone(s)

est1=CHL252F,1,226
est2=CHL252Z,227,786
est3=SLG393Z,364,953
Translated Amino Acid sequence
i*pc*y*FIKIFEHLFIYLFILLXQKLFCKKKILFKIKKKKXKKXKKKKKKXXGGXKKPP
PPXXXXXXXKXTXKKXXX---

---VIIYVLSSQSLSSNNNNNSTPTIEPNYVTTVDIHTFITSHKVLLNLNNNLIPDRNSV
TNCLSHQHRIFKSGKEIYGCGYWSLKDPYEDPWNESIDSNSSTPSSSPLNPLICGAITNR
GNICKKPLNKCSFHSNKPGIKNISSITTMTNNNTNSFYLIQKQQQQQLQHQQQQQQQQQN
NSNSNNEDEFFSESESESESDFYXXDVDNNGNFGSSSSRASSKSNGSSHNNNNNNNNNNK
QVNNN


Translated Amino Acid sequence (All Frames)
Frame A:
i*pc*y*FIKIFEHLFIYLFILLXQKLFCKKKILFKIKKKKXKKXKKKKKKXXGGXKKPP
PPXXXXXXXKXTXKKXXX---

---VIIYVLSSQSLSSNNNNNSTPTIEPNYVTTVDIHTFITSHKVLLNLNNNLIPDRNSV
TNCLSHQHRIFKSGKEIYGCGYWSLKDPYEDPWNESIDSNSSTPSSSPLNPLICGAITNR
GNICKKPLNKCSFHSNKPGIKNISSITTMTNNNTNSFYLIQKQQQQQLQHQQQQQQQQQN
NSNSNNEDEFFSESESESESDFYXXDVDNNGNFGSSSSRASSKSNGSSHNNNNNNNNNNK
QVNNN

Frame B:
fshvnins*rylniylfiylfyxdrnffvkkkyysk*kkkkxkx*kkkkkxxgggkknpp
pxxxxxxxxxxpxkkxxx---

---llymfyqvkvyqviiiitqhqqlnqim*qllifihl*hhikyy*i*iii*ylieivl
qivfhintvylnlvkkfmvavighskihmkilgmnqliqilqphhhhl*il*fvvqsliv
eifvrnh*invhfiqinlv*kishqlrr*qiiiqtafi*fknsnnnnfninnnsnsnnki
ivivimkmnfsvkvkvkvkvifixxmliimvilevvvveqvvkvmvvatttttttttttn
k*tt

Frame C:
lamlilihkdi*tfiylfiyfixtetfl*kkniiqnkkkkx*kxkkkkkkxxggxkktpp
pxxxxxxxkxnxkkxxx---

---yyicfikskfik*****lntnn*tklcnnc*ysyiynit*siikfk**fnt**k*cy
klsftstpyi*iw*rnlwlrllvtqrsi*rsle*in*fkffnpiiitfksfnlwcnh*sw
kyl*etik*mfisfk*twykkylinydddk**ykqllfnsktattttststttatattk*
******r*ifq*k*k*k*k*flxx*c***w*fwk****sk**k*w**pqqqqqqqqqqqt
seqq

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11830-1 (Contig-U11830-1Q)
/CSM_Contig/Contig-U11830-1Q.Seq.d
(971 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Conti... 932 0.0
Contig-U11806-1 (Contig-U11806-1Q) /CSM_Contig/Conti... 58 2e-08
Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U12089-1 (Contig-U12089-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U10772-1 (Contig-U10772-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U08981-1 (Contig-U08981-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U02015-1 (Contig-U02015-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U01687-1 (Contig-U01687-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U14532-1 (Contig-U14532-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Conti... 34 0.27

>Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d
Length = 971

Score = 932 bits (470), Expect = 0.0
Identities = 470/470 (100%)
Strand = Plus / Plus


Query: 246 gttattatatatgttttatcaagtcaaagtttatcaagtaataataataataactcaaca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gttattatatatgttttatcaagtcaaagtttatcaagtaataataataataactcaaca 305


Query: 306 ccaacaattgaaccaaattatgtaacaactgttgatattcatacatttataacatcacat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaacaattgaaccaaattatgtaacaactgttgatattcatacatttataacatcacat 365


Query: 366 aaagtattattaaatttaaataataatttaatacctgatagaaatagtgttacaaattgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaagtattattaaatttaaataataatttaatacctgatagaaatagtgttacaaattgt 425


Query: 426 ctttcacatcaacaccgtatatttaaatctggtaaagaaatttatggttgcggttattgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctttcacatcaacaccgtatatttaaatctggtaaagaaatttatggttgcggttattgg 485


Query: 486 tcactcaaagatccatatgaagatccttggaatgaatcaattgattcaaattcttcaacc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcactcaaagatccatatgaagatccttggaatgaatcaattgattcaaattcttcaacc 545


Query: 546 ccatcatcatcacctttaaatcctttaatttgtggtgcaatcactaatcgtggaaatatt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ccatcatcatcacctttaaatcctttaatttgtggtgcaatcactaatcgtggaaatatt 605


Query: 606 tgtaagaaaccattaaataaatgttcatttcattcaaataaacctggtataaaaaatatc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgtaagaaaccattaaataaatgttcatttcattcaaataaacctggtataaaaaatatc 665


Query: 666 tcatcaattacgacgatgacaaataataatacaaacagcttttatttaat 715
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcatcaattacgacgatgacaaataataatacaaacagcttttatttaat 715


Score = 182 bits (92), Expect = 5e-46
Identities = 104/104 (100%)
Strand = Plus / Plus


Query: 774 aataatagtaatagtaataatgaagatgaatttttcagtgaaagtgaaagtgaaagtgaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aataatagtaatagtaataatgaagatgaatttttcagtgaaagtgaaagtgaaagtgaa 833


Query: 834 agtgatttttattnnnntgatgttgataataatggtaattttgg 877
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 agtgatttttattnnnntgatgttgataataatggtaattttgg 877


Score = 79.8 bits (40), Expect = 5e-15
Identities = 40/40 (100%)
Strand = Plus / Plus


Query: 1 atttagccatgttaatattaattcataaagatatttgaac 40
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttagccatgttaatattaattcataaagatatttgaac 40


Score = 40.1 bits (20), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 65 tattangacagaaacttttttgt 87
|||||||||||||||||||||||
Sbjct: 65 tattangacagaaacttttttgt 87


Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 518 tgaatcaattgattca 533
||||||||||||||||
Sbjct: 533 tgaatcaattgattca 518


>Contig-U11806-1 (Contig-U11806-1Q) /CSM_Contig/Contig-U11806-1Q.Seq.d
Length = 1162

Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 810 agtgaaagtgaaagtgaaagtgaaagtga 838
|||||||||||||||||||||||||||||
Sbjct: 582 agtgaaagtgaaagtgaaagtgaaagtga 610


Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 810 agtgaaagtgaaagtgaaagtgaaagtga 838
|||||||||||||||||||||||||||||
Sbjct: 570 agtgaaagtgaaagtgaaagtgaaagtga 598


Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 810 agtgaaagtgaaagtgaaagtgaaagtga 838
|||||||||||||||||||||||||||||
Sbjct: 576 agtgaaagtgaaagtgaaagtgaaagtga 604


Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 810 agtgaaagtgaaagtgaaagtgaaagtga 838
|||||||||||||||||||||||||||||
Sbjct: 564 agtgaaagtgaaagtgaaagtgaaagtga 592


Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 813 gaaagtgaaagtgaaagtgaaagtga 838
||||||||||||||||||||||||||
Sbjct: 561 gaaagtgaaagtgaaagtgaaagtga 586


Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 810 agtgaaagtgaaagtgaaagtgaaa 834
|||||||||||||||||||||||||
Sbjct: 588 agtgaaagtgaaagtgaaagtgaaa 612


Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 810 agtgaaagtgaaagtgaaagtgaaagtga 838
||||| || ||||||||||||||||||||
Sbjct: 552 agtgatagcgaaagtgaaagtgaaagtga 580


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 284 taataataataataa 298
|||||||||||||||
Sbjct: 182 taataataataataa 196


Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 284 taataataataataa 298
|||||||||||||||
Sbjct: 185 taataataataataa 199


>Contig-U11875-1 (Contig-U11875-1Q) /CSM_Contig/Contig-U11875-1Q.Seq.d
Length = 2137

Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 776 taatagtaatagtaataatgaagatgaa 803
||||| ||||||||||||||||||||||
Sbjct: 834 taataataatagtaataatgaagatgaa 861


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,281
Number of Sequences: 6905
Number of extensions: 37281
Number of successful extensions: 12757
Number of sequences better than 10.0: 1656
length of query: 971
length of database: 5,674,871
effective HSP length: 16
effective length of query: 955
effective length of database: 5,564,391
effective search space: 5313993405
effective search space used: 5313993405
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA
Query= Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d
(971 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' ... 886 0.0 2
(AU039777) Dictyostelium discoideum slug cDNA, clone SLG393. 646 0.0 2
(BJ367867) Dictyostelium discoideum cDNA clone:ddc44g14, 5' ... 80 5e-15 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 52 7e-10 7
(BJ367011) Dictyostelium discoideum cDNA clone:ddc41d04, 5' ... 58 4e-07 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 58 2e-06 5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 2e-05 5
(AF204951) Ectocarpus siliculosus virus, complete genome. 62 4e-05 1
(CA964496) CcLX04a14l20f1 Carp mixed tissue library 1 Cyprin... 62 4e-05 1
(G38823) TA99 Plasmodium falciparum haploid Plasmodium falci... 34 8e-05 4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 42 9e-05 5
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 42 9e-05 5
(ET898754) CHO_OF145xg03f1.ab1 CHO_OF Nicotiana tabacum geno... 42 1e-04 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 2e-04 5
(DQ483358) Gymnogyps californianus contig 61H microsatellite... 60 2e-04 1
(DJ205592) Method for identification of useful proteins deri... 60 2e-04 1
(L27591) Plasmodium chabaudi adami strain DK erythrocyte mem... 60 2e-04 1
(L27589) Plasmodium chabaudi adami erythrocyte membrane anti... 60 2e-04 1
(AC175346) Bos taurus clone CH240-527K6, WORKING DRAFT SEQUE... 60 2e-04 1
(AC172145) Bos taurus clone CH240-161L3, WORKING DRAFT SEQUE... 60 2e-04 1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 54 2e-04 12
(AC158065) Bos taurus clone CH240-58F5, WORKING DRAFT SEQUEN... 44 3e-04 6
(AF010577) Plasmodium falciparum microsatellite TA99 sequence. 34 3e-04 4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 46 4e-04 7
(AY428796) Dictyostelium discoideum DIF insensitive mutant A... 38 4e-04 5
(DH307326) Oryzias latipes Fosmid clone:GOLWFno659_g16, forw... 38 4e-04 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 42 6e-04 4
(DQ984517) Tripsacum dactyloides cultivar Pete mitochondrion... 58 6e-04 1
(AL031542) Human DNA sequence from clone RP5-1147O16 on chro... 58 6e-04 1
(AC156122) Bos taurus clone CH240-47H2, WORKING DRAFT SEQUEN... 58 6e-04 1
(AC156049) Bos taurus clone CH240-57F7, WORKING DRAFT SEQUEN... 58 6e-04 1
(AC152624) Bos taurus clone CH240-14A23, WORKING DRAFT SEQUE... 58 6e-04 1
(AC120061) Rattus norvegicus clone CH230-179G12, *** SEQUENC... 58 6e-04 1
(AC113692) Rattus norvegicus clone CH230-13I14, *** SEQUENCI... 58 6e-04 1
(AC107092) Rattus norvegicus clone CH230-229P8, *** SEQUENCI... 58 6e-04 1
(AP010123) Lotus japonicus genomic DNA, chromosome 2, clone:... 58 6e-04 1
(AP007661) Lotus japonicus genomic DNA, chromosome 2, clone:... 58 6e-04 1
(AC230111) Bos taurus clone CH240-521G5, WORKING DRAFT SEQUE... 58 6e-04 1
(AC230057) Bos taurus clone CH240-522P22, WORKING DRAFT SEQU... 58 6e-04 1
(AC224989) Bos taurus clone CH240-46D12, WORKING DRAFT SEQUE... 58 6e-04 1
(AC224050) Bos taurus clone CH240-451C12, WORKING DRAFT SEQU... 58 6e-04 1
(AC222992) Bos taurus clone CH240-433D20, WORKING DRAFT SEQU... 58 6e-04 1
(AC222179) Bos taurus clone CH240-411G20, WORKING DRAFT SEQU... 58 6e-04 1
(AC221500) Bos taurus clone CH240-409C16, WORKING DRAFT SEQU... 58 6e-04 1
(AC221271) Bos taurus clone CH240-401L21, WORKING DRAFT SEQU... 58 6e-04 1
(AC220902) Bos taurus clone CH240-341H10, WORKING DRAFT SEQU... 58 6e-04 1
(AC220458) Bos taurus clone CH240-357M14, WORKING DRAFT SEQU... 58 6e-04 1
(AC220099) Bos taurus clone CH240-362J2, WORKING DRAFT SEQUE... 58 6e-04 1
(AC219984) Bos taurus clone CH240-317B4, WORKING DRAFT SEQUE... 58 6e-04 1
(AC219882) Bos taurus clone CH240-319D16, WORKING DRAFT SEQU... 58 6e-04 1
(AC218545) Bos taurus clone CH240-312P9, WORKING DRAFT SEQUE... 58 6e-04 1
(AC218384) Bos taurus clone CH240-285B22, WORKING DRAFT SEQU... 58 6e-04 1
(AC174958) Bos taurus clone CH240-14D1, *** SEQUENCING IN PR... 58 6e-04 1
(AC173766) Bos taurus clone CH240-424H15, WORKING DRAFT SEQU... 58 6e-04 1
(AC172435) Bos taurus clone CH240-496J5, WORKING DRAFT SEQUE... 58 6e-04 1
(AC166434) Bos taurus clone CH240-180O5, WORKING DRAFT SEQUE... 58 6e-04 1
(AC163773) Bos taurus clone CH240-255L17, WORKING DRAFT SEQU... 58 6e-04 1
(AC162979) Bos taurus clone CH240-122E2, WORKING DRAFT SEQUE... 58 6e-04 1
(EK513359) 1095515488568 Global-Ocean-Sampling_GS-32-01-01-1... 58 6e-04 1
(EJ602725) 1092961207907 Global-Ocean-Sampling_GS-29-01-01-1... 58 6e-04 1
(EJ582626) 1092960185710 Global-Ocean-Sampling_GS-29-01-01-1... 58 6e-04 1
(BZ169004) CH230-463P1.TJ CHORI-230 Segment 2 Rattus norvegi... 58 6e-04 1
(FG249078) CBYC1190.b1 CBYC Cercospora zeae-maydis cercospor... 58 6e-04 1
(DH344803) Oryzias latipes Fosmid clone:GOLWFno716_m13, forw... 38 7e-04 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 42 8e-04 6
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 40 0.001 5
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 36 0.001 7
(BJ367108) Dictyostelium discoideum cDNA clone:ddc41l09, 5' ... 42 0.001 3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 46 0.001 4
(BJ446301) Dictyostelium discoideum cDNA clone:ddv62e12, 3' ... 38 0.001 3
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 48 0.001 6
(BX230916) Danio rerio genomic clone DKEY-249L22, genomic su... 40 0.001 3
(AL844509) Plasmodium falciparum chromosome 13. 42 0.002 9
(U23477) Dictyostelium discoideum phosphatidylinositol-4,5-d... 38 0.002 4
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 42 0.002 5
(AB030033) Dictyostelium discoideum gene for AmiB, complete ... 42 0.002 4
(AY163574) Dictyostelium discoideum RGS-containing protein k... 42 0.002 4
(AU074248) Dictyostelium discoideum slug cDNA, clone SSK139. 34 0.002 4
(C92481) Dictyostelium discoideum slug cDNA, clone SSE624. 42 0.002 3
(BI815168) PfESToaa15c07.y1 Plasmodium falciparum 3D7 asexua... 34 0.002 4
(U81000) Dictyostelium discoideum unknown protein mRNA, prom... 46 0.002 2
(AP009375) Lobularia maritima chloroplast DNA, complete sequ... 56 0.003 1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 56 0.003 1
(AC135600) Oryza sativa chromosome 3 BAC OSJNBb0047K21 genom... 56 0.003 1
(AC133859) Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 56 0.003 1
(EA710384) Sequence 89263 from patent US 7365185. 56 0.003 1
(AM910990) Plasmodium knowlesi strain H chromosome 8, comple... 56 0.003 1
(AC162534) Bos taurus clone CH240-120J9, WORKING DRAFT SEQUE... 56 0.003 1
(AC162007) Bos taurus clone CH240-108B3, WORKING DRAFT SEQUE... 56 0.003 1
(AC224575) Bos taurus clone CH240-481E16, WORKING DRAFT SEQU... 56 0.003 1
(AC224360) Bos taurus clone CH240-487O6, WORKING DRAFT SEQUE... 56 0.003 1
(AC223275) Bos taurus clone CH240-424D7, WORKING DRAFT SEQUE... 56 0.003 1
(AC222186) Bos taurus clone CH240-411I16, WORKING DRAFT SEQU... 56 0.003 1
(AC221473) Bos taurus clone CH240-410C6, WORKING DRAFT SEQUE... 56 0.003 1
(AC219248) Bos taurus clone CH240-334D7, WORKING DRAFT SEQUE... 56 0.003 1
(AC218315) Bos taurus clone CH240-287I6, WORKING DRAFT SEQUE... 56 0.003 1
(AC218266) Bos taurus clone CH240-289B9, WORKING DRAFT SEQUE... 56 0.003 1
(AC182062) Bos taurus clone CH240-488J22, WORKING DRAFT SEQU... 56 0.003 1
(AC172154) Bos taurus clone CH240-249E20, WORKING DRAFT SEQU... 56 0.003 1
(AC163304) Bos taurus clone CH240-144N2, *** SEQUENCING IN P... 56 0.003 1

>(BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' end,
single read.
Length = 560

Score = 886 bits (447), Expect(2) = 0.0
Identities = 464/470 (98%)
Strand = Plus / Minus


Query: 247 ttattatatatgttttatcaagtcaaagtttatcaagtaataataataataactcaacac 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttattatatatgttttatcaagtcaaagtttatcaagtaataataataataactcaacac 500


Query: 307 caacaattgaaccaaattatgtaacaactgttgatattcatacatttataacatcacata 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caacaattgaaccaaattatgtaacaactgttgatattcatacatttataacatcacata 440


Query: 367 aagtattattaaatttaaataataatttaatacctgatagaaatagtgttacaaattgtc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aagtattattaaatttaaataataatttaatacctgatagaaatagtgttacaaattgtc 380


Query: 427 tttcacatcaacaccgtatatttaaatctggtaaagaaatttatggttgcggttattggt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttcacatcaacaccgtatatttaaatctggtaaagaaatttatggttgcggttattggt 320


Query: 487 cactcaaagatccatatgaagatccttggaatgaatcaattgattcaaattcttcaaccc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cactcaaagatccatatgaagatccttggaatgaatcaattgattcaaattcttcaaccc 260


Query: 547 catcatcatcacctttaaatcctttaatttgtggtgcaatcactaatcgtggaaatattt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catcatcatcacctttaaatcctttaatttgtggtgcaatcactaatcgtggaaatattt 200


Query: 607 gtaagaaaccattaaataaatgttcatttcattcaaataaacctggtataaaaaatatct 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gtaagaaaccattaaataaatgttcatttcattcaaataaacctggtataaaaaatatct 140


Query: 667 catcaattacgacgatgacaaataataatacaaacagcttttatttaatt 716
||||| || || || |||||||||||||||||||||||||||||||||
Sbjct: 139 nttcaataacaaccataacaaataataatacaaacagcttttatttaatt 90

Score = 63.9 bits (32), Expect(2) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Minus


Query: 774 aataatagtaatagtaataatgaagatgaatt 805
||||||||||||||||||||||||||||||||
Sbjct: 32 aataatagtaatagtaataatgaagatgaatt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 990,058,815
Number of extensions: 70824843
Number of successful extensions: 10070972
Number of sequences better than 10.0: 4178
Length of query: 971
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 947
Effective length of database: 97,308,875,965
Effective search space: 92151505538855
Effective search space used: 92151505538855
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d
(971 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117075_20(AC117075|pid:none) Dictyostelium discoideum chromoso... 42 0.042
AC117081_12(AC117081|pid:none) Dictyostelium discoideum chromoso... 37 1.3
AE014185_77(AE014185|pid:none) Plasmodium falciparum 3D7 chromos... 34 8.7

>AC117075_20(AC117075|pid:none) Dictyostelium discoideum chromosome
2 map 5201047-5455781 strain AX4, complete sequence.
Length = 637

Score = 41.6 bits (96), Expect = 0.042
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3

Query: 339 DIHTFITSHKVLLNLNNNLIPD-RNSVTNCLSHQHRIFKSGKEIYGC-GYWSLKDPYEDP 512
D++ ++ +H L+ P R + + LSH R+F+SG + + C G+W LKD DP
Sbjct: 119 DVYGYVATHWSLICTKKKKTPGWRKQLQDALSHCRRLFESGADHHECYGFWKLKD-MSDP 177

Query: 513 W 515
W
Sbjct: 178 W 178

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 718,836,029
Number of extensions: 14278862
Number of successful extensions: 17513
Number of sequences better than 10.0: 3
Number of HSP's gapped: 17501
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 195
Effective length of database: 636,901,312
Effective search space: 124195755840
Effective search space used: 124195755840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.98 gvh: 0.63 alm: 0.31 top: 0.97 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.31 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U11830-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0