Contig-U11830-1 |
Contig ID |
Contig-U11830-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
961 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
2 |
Number of EST |
3 |
Link to clone list |
U11830 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.27 |
Homology vs DNA |
Query= Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d (971 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' ... 886 0.0 2 (AU039777) Dictyostelium discoideum slug cDNA, clone SLG393. 646 0.0 2 (BJ367867) Dictyostelium discoideum cDNA clone:ddc44g14, 5' ... 80 5e-15 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 52 7e-10 7 (BJ367011) Dictyostelium discoideum cDNA clone:ddc41d04, 5' ... 58 4e-07 3 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 58 2e-06 5 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 2e-05 5 (AF204951) Ectocarpus siliculosus virus, complete genome. 62 4e-05 1 (CA964496) CcLX04a14l20f1 Carp mixed tissue library 1 Cyprin... 62 4e-05 1 (G38823) TA99 Plasmodium falciparum haploid Plasmodium falci... 34 8e-05 4 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 42 9e-05 5 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 42 9e-05 5 (ET898754) CHO_OF145xg03f1.ab1 CHO_OF Nicotiana tabacum geno... 42 1e-04 3 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 2e-04 5 (DQ483358) Gymnogyps californianus contig 61H microsatellite... 60 2e-04 1 (DJ205592) Method for identification of useful proteins deri... 60 2e-04 1 (L27591) Plasmodium chabaudi adami strain DK erythrocyte mem... 60 2e-04 1 (L27589) Plasmodium chabaudi adami erythrocyte membrane anti... 60 2e-04 1 (AC175346) Bos taurus clone CH240-527K6, WORKING DRAFT SEQUE... 60 2e-04 1 (AC172145) Bos taurus clone CH240-161L3, WORKING DRAFT SEQUE... 60 2e-04 1 (AP006852) Candida albicans genomic DNA, chromosome 7, compl... 54 2e-04 12 (AC158065) Bos taurus clone CH240-58F5, WORKING DRAFT SEQUEN... 44 3e-04 6 (AF010577) Plasmodium falciparum microsatellite TA99 sequence. 34 3e-04 4 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 46 4e-04 7 (AY428796) Dictyostelium discoideum DIF insensitive mutant A... 38 4e-04 5 (DH307326) Oryzias latipes Fosmid clone:GOLWFno659_g16, forw... 38 4e-04 3 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 42 6e-04 4 (DQ984517) Tripsacum dactyloides cultivar Pete mitochondrion... 58 6e-04 1 (AL031542) Human DNA sequence from clone RP5-1147O16 on chro... 58 6e-04 1 (AC156122) Bos taurus clone CH240-47H2, WORKING DRAFT SEQUEN... 58 6e-04 1 (AC156049) Bos taurus clone CH240-57F7, WORKING DRAFT SEQUEN... 58 6e-04 1 (AC152624) Bos taurus clone CH240-14A23, WORKING DRAFT SEQUE... 58 6e-04 1 (AC120061) Rattus norvegicus clone CH230-179G12, *** SEQUENC... 58 6e-04 1 (AC113692) Rattus norvegicus clone CH230-13I14, *** SEQUENCI... 58 6e-04 1 (AC107092) Rattus norvegicus clone CH230-229P8, *** SEQUENCI... 58 6e-04 1 (AP010123) Lotus japonicus genomic DNA, chromosome 2, clone:... 58 6e-04 1 (AP007661) Lotus japonicus genomic DNA, chromosome 2, clone:... 58 6e-04 1 (AC230111) Bos taurus clone CH240-521G5, WORKING DRAFT SEQUE... 58 6e-04 1 (AC230057) Bos taurus clone CH240-522P22, WORKING DRAFT SEQU... 58 6e-04 1 (AC224989) Bos taurus clone CH240-46D12, WORKING DRAFT SEQUE... 58 6e-04 1 (AC224050) Bos taurus clone CH240-451C12, WORKING DRAFT SEQU... 58 6e-04 1 (AC222992) Bos taurus clone CH240-433D20, WORKING DRAFT SEQU... 58 6e-04 1 (AC222179) Bos taurus clone CH240-411G20, WORKING DRAFT SEQU... 58 6e-04 1 (AC221500) Bos taurus clone CH240-409C16, WORKING DRAFT SEQU... 58 6e-04 1 (AC221271) Bos taurus clone CH240-401L21, WORKING DRAFT SEQU... 58 6e-04 1 (AC220902) Bos taurus clone CH240-341H10, WORKING DRAFT SEQU... 58 6e-04 1 (AC220458) Bos taurus clone CH240-357M14, WORKING DRAFT SEQU... 58 6e-04 1 (AC220099) Bos taurus clone CH240-362J2, WORKING DRAFT SEQUE... 58 6e-04 1 (AC219984) Bos taurus clone CH240-317B4, WORKING DRAFT SEQUE... 58 6e-04 1 (AC219882) Bos taurus clone CH240-319D16, WORKING DRAFT SEQU... 58 6e-04 1 (AC218545) Bos taurus clone CH240-312P9, WORKING DRAFT SEQUE... 58 6e-04 1 (AC218384) Bos taurus clone CH240-285B22, WORKING DRAFT SEQU... 58 6e-04 1 (AC174958) Bos taurus clone CH240-14D1, *** SEQUENCING IN PR... 58 6e-04 1 (AC173766) Bos taurus clone CH240-424H15, WORKING DRAFT SEQU... 58 6e-04 1 (AC172435) Bos taurus clone CH240-496J5, WORKING DRAFT SEQUE... 58 6e-04 1 (AC166434) Bos taurus clone CH240-180O5, WORKING DRAFT SEQUE... 58 6e-04 1 (AC163773) Bos taurus clone CH240-255L17, WORKING DRAFT SEQU... 58 6e-04 1 (AC162979) Bos taurus clone CH240-122E2, WORKING DRAFT SEQUE... 58 6e-04 1 (EK513359) 1095515488568 Global-Ocean-Sampling_GS-32-01-01-1... 58 6e-04 1 (EJ602725) 1092961207907 Global-Ocean-Sampling_GS-29-01-01-1... 58 6e-04 1 (EJ582626) 1092960185710 Global-Ocean-Sampling_GS-29-01-01-1... 58 6e-04 1 (BZ169004) CH230-463P1.TJ CHORI-230 Segment 2 Rattus norvegi... 58 6e-04 1 (FG249078) CBYC1190.b1 CBYC Cercospora zeae-maydis cercospor... 58 6e-04 1 (DH344803) Oryzias latipes Fosmid clone:GOLWFno716_m13, forw... 38 7e-04 3 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 42 8e-04 6 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 40 0.001 5 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 36 0.001 7 (BJ367108) Dictyostelium discoideum cDNA clone:ddc41l09, 5' ... 42 0.001 3 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 46 0.001 4 (BJ446301) Dictyostelium discoideum cDNA clone:ddv62e12, 3' ... 38 0.001 3 (AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 48 0.001 6 (BX230916) Danio rerio genomic clone DKEY-249L22, genomic su... 40 0.001 3 (AL844509) Plasmodium falciparum chromosome 13. 42 0.002 9 (U23477) Dictyostelium discoideum phosphatidylinositol-4,5-d... 38 0.002 4 (AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 42 0.002 5 (AB030033) Dictyostelium discoideum gene for AmiB, complete ... 42 0.002 4 (AY163574) Dictyostelium discoideum RGS-containing protein k... 42 0.002 4 (AU074248) Dictyostelium discoideum slug cDNA, clone SSK139. 34 0.002 4 (C92481) Dictyostelium discoideum slug cDNA, clone SSE624. 42 0.002 3 (BI815168) PfESToaa15c07.y1 Plasmodium falciparum 3D7 asexua... 34 0.002 4 (U81000) Dictyostelium discoideum unknown protein mRNA, prom... 46 0.002 2 (AP009375) Lobularia maritima chloroplast DNA, complete sequ... 56 0.003 1 (AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 56 0.003 1 (AC135600) Oryza sativa chromosome 3 BAC OSJNBb0047K21 genom... 56 0.003 1 (AC133859) Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 56 0.003 1 (EA710384) Sequence 89263 from patent US 7365185. 56 0.003 1 (AM910990) Plasmodium knowlesi strain H chromosome 8, comple... 56 0.003 1 (AC162534) Bos taurus clone CH240-120J9, WORKING DRAFT SEQUE... 56 0.003 1 (AC162007) Bos taurus clone CH240-108B3, WORKING DRAFT SEQUE... 56 0.003 1 (AC224575) Bos taurus clone CH240-481E16, WORKING DRAFT SEQU... 56 0.003 1 (AC224360) Bos taurus clone CH240-487O6, WORKING DRAFT SEQUE... 56 0.003 1 (AC223275) Bos taurus clone CH240-424D7, WORKING DRAFT SEQUE... 56 0.003 1 (AC222186) Bos taurus clone CH240-411I16, WORKING DRAFT SEQU... 56 0.003 1 (AC221473) Bos taurus clone CH240-410C6, WORKING DRAFT SEQUE... 56 0.003 1 (AC219248) Bos taurus clone CH240-334D7, WORKING DRAFT SEQUE... 56 0.003 1 (AC218315) Bos taurus clone CH240-287I6, WORKING DRAFT SEQUE... 56 0.003 1 (AC218266) Bos taurus clone CH240-289B9, WORKING DRAFT SEQUE... 56 0.003 1 (AC182062) Bos taurus clone CH240-488J22, WORKING DRAFT SEQU... 56 0.003 1 (AC172154) Bos taurus clone CH240-249E20, WORKING DRAFT SEQU... 56 0.003 1 (AC163304) Bos taurus clone CH240-144N2, *** SEQUENCING IN P... 56 0.003 1
>(BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' end, single read. Length = 560
Score = 886 bits (447), Expect(2) = 0.0 Identities = 464/470 (98%) Strand = Plus / Minus
Query: 247 ttattatatatgttttatcaagtcaaagtttatcaagtaataataataataactcaacac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 ttattatatatgttttatcaagtcaaagtttatcaagtaataataataataactcaacac 500
Query: 307 caacaattgaaccaaattatgtaacaactgttgatattcatacatttataacatcacata 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 caacaattgaaccaaattatgtaacaactgttgatattcatacatttataacatcacata 440
Query: 367 aagtattattaaatttaaataataatttaatacctgatagaaatagtgttacaaattgtc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 aagtattattaaatttaaataataatttaatacctgatagaaatagtgttacaaattgtc 380
Query: 427 tttcacatcaacaccgtatatttaaatctggtaaagaaatttatggttgcggttattggt 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 tttcacatcaacaccgtatatttaaatctggtaaagaaatttatggttgcggttattggt 320
Query: 487 cactcaaagatccatatgaagatccttggaatgaatcaattgattcaaattcttcaaccc 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 cactcaaagatccatatgaagatccttggaatgaatcaattgattcaaattcttcaaccc 260
Query: 547 catcatcatcacctttaaatcctttaatttgtggtgcaatcactaatcgtggaaatattt 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 catcatcatcacctttaaatcctttaatttgtggtgcaatcactaatcgtggaaatattt 200
Query: 607 gtaagaaaccattaaataaatgttcatttcattcaaataaacctggtataaaaaatatct 666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 gtaagaaaccattaaataaatgttcatttcattcaaataaacctggtataaaaaatatct 140
Query: 667 catcaattacgacgatgacaaataataatacaaacagcttttatttaatt 716 ||||| || || || ||||||||||||||||||||||||||||||||| Sbjct: 139 nttcaataacaaccataacaaataataatacaaacagcttttatttaatt 90
Score = 63.9 bits (32), Expect(2) = 0.0 Identities = 32/32 (100%) Strand = Plus / Minus
Query: 774 aataatagtaatagtaataatgaagatgaatt 805 |||||||||||||||||||||||||||||||| Sbjct: 32 aataatagtaatagtaataatgaagatgaatt 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 990,058,815 Number of extensions: 70824843 Number of successful extensions: 10070972 Number of sequences better than 10.0: 4178 Length of query: 971 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 947 Effective length of database: 97,308,875,965 Effective search space: 92151505538855 Effective search space used: 92151505538855 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |