Contig-U11827-1
Contig ID Contig-U11827-1
Contig update 2002.12.18
Contig sequence
>Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d
TATGATATCAAGTTCTATGAGCTACAGACATAGTACAAATTCAGTGTACA
CACTGAACCCACATTTGAATATTCCAATTTCAACATCGACAACAATTCCA
CCAACTAGTTTTTATGCAAACAATACACCAGAAATGATTCAATCTCAAAG
TGAAAATACCAATACCAATAATATTAATAATAGCAGCAGCAATATCAACA
ACAATAATAATAATACTCCATATTCAATGTCGATGTCAACATCTTTATCT
TCATCACCATCAGTTTCATTTAATCATTTAGATTTAAATAGTATTAATAA
TAAAATTAATAATAACACCACCACCAATAATAACAATAATAATAATAATA
ATAATGATGATAAATTCGATACAAATGCATTAAAATTGTCAAATACAATG
ATAATTAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATANTAAT----------CCCATTAAC
CTTTACACCAAAAGATTTTCAATCTTCAATTTCACCTTCAACCGATATGA
TCGCCTCCTTATCAATTATAACCCAAATGACTCAAACTCTAAAATTCCCA
CCACAACAACAACAAGATAATCCTTTTTCAAAATCATCAATTAAAATTTC
ACCTTCACCTTTAAATTCAACAAATATATCAATACCGAAGAATCAACAAT
TTCAACATCCTTTTCAAATTCAACCACAATTAGATCTTAACCTTCAACAA
CAACAACAACAATCACCTCAACAACTAAATGATAATCCACCTTTAAATAT
GAGTAGTAATAGCATTAAATTTCCACCTGTAACATCTTTATCATCTTGTC
ATTTATTTGAAGATAGTAAAAATAATGATAATAATAATAAACAACAACAA
CAGCAGCAACAACAACAACAAAAAAATAATCAACAATGTAGTGGTTTTTC
ACATTTTTTAAATAATAATAATAATAATGATAACAATGGTTCTTCAGGTG
GAGGATTTAATGGCTCATTTTTGTTTAATAGTAACAACAGTGGATCATCT
TCAACTAATTCTGAATGTTCTAATAATAATAAAAACAATAATAATAATAG
TAACAACAATAATAATAATAATAATAACAAAAATAGCGATAATAATGGTA
CAAAAGATAAAGATGAAAATGATTCTTGTGAATCACCAAGAGTTACACCA
ATTAAATGTTTTTAAAATTTCATTCTAAAAAACACAAAACAAAAACGNAT
TAATAAAATTTGTAAATACTTTAATAA

Gap gap included
Contig length 1267
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 4
Number of EST 5
Link to clone list U11827
List of clone(s)

est1=SHD287F,1,195
est2=CHL142F,122,481
est3=VHN433Z,482,1247
est4=VHP464Z,514,1268
est5=CHL142Z,594,1215
Translated Amino Acid sequence
MISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNTNNINN
SSSNINNNNNNTPYSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNNDD
KFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNXN---

---PLTFTPKDFQSSISPSTDMIASLSIITQMTQTLKFPPQQQQDNPFSKSSIKISPSPL
NSTNISIPKNQQFQHPFQIQPQLDLNLQQQQQQSPQQLNDNPPLNMSSNSIKFPPVTSLS
SCHLFEDSKNNDNNNKQQQQQQQQQQKNNQQCSGFSHFLNNNNNNDNNGSSGGGFNGSFL
FNSNNSGSSSTNSECSNNNKNNNNNSNNNNNNNNNKNSDNNGTKDKDENDSCESPRVTPI
KCF*nfilkntkqkrinkickyfn


Translated Amino Acid sequence (All Frames)
Frame A:
ydikfyelqt*ykfsvhteptfeysnfnidnnstn*flckqytrndsisk*kyqyq*y**
*qqqyqqq***ysifnvdvnififitisfi*sfrfk*y***n***hhhq**q********
*irykcikivkyndn*k*********************x*---

---pinlytkrfsifnftfnrydrllinynpndsnskiptttttr*sffkiin*nftftf
kfnkyinteestistsfsnsttirs*pstttttitsttk**stfkye***h*istcnifi
ilsfi*r**k******ttttaattttkk*stm*wfftffk*******qwffrwri*wlif
v***qqwiifn*f*mf****kq*****qq******qk*r**wykr*r*k*fl*itksytn
*mflkfhskkhktktx**nl*il**

Frame B:
MISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNTNNINN
SSSNINNNNNNTPYSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNNDD
KFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNXN---

---PLTFTPKDFQSSISPSTDMIASLSIITQMTQTLKFPPQQQQDNPFSKSSIKISPSPL
NSTNISIPKNQQFQHPFQIQPQLDLNLQQQQQQSPQQLNDNPPLNMSSNSIKFPPVTSLS
SCHLFEDSKNNDNNNKQQQQQQQQQQKNNQQCSGFSHFLNNNNNNDNNGSSGGGFNGSFL
FNSNNSGSSSTNSECSNNNKNNNNNSNNNNNNNNNKNSDNNGTKDKDENDSCESPRVTPI
KCF*nfilkntkqkrinkickyfn

Frame C:
*yqvl*atdivqiqcth*thi*ifqfqhrqqfhqlvfmqtihqk*fnlkvkipipiilii
aaaisttiiiilhiqcrcqhlylhhhqfhlii*i*ivliikliitpppiitiiiiiimmi
nsiqmh*ncqiq**lkiiiiiiiiiiiiiiiiiiiiiix---

---h*plhqkifnlqfhlqpi*sppyql*pk*lkl*nshhnnnkiilfqnhqlkfhlhl*
iqqiyqyrrinnfnilfkfnhn*iltfnnnnnnhlnn*miihl*i*vvialnfhl*hlyh
lviylkivkimiiiinnnnssnnnnkkiinnvvvfhif*iiiiimitmvlqvedlmahfc
livttvdhlqlilnvliiiktiiiivttiiiiiitkiaiimvqkikmkmilvnhqelhql
nvfkisf*ktqnknxlikfvntli

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11827-1 (Contig-U11827-1Q)
/CSM_Contig/Contig-U11827-1Q.Seq.d
(1277 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti... 500 e-141
Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U11262-1 (Contig-U11262-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U09020-1 (Contig-U09020-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U06528-1 (Contig-U06528-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11164-1 (Contig-U11164-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13032-1 (Contig-U13032-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti... 40 0.006

>Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d
Length = 1277

Score = 500 bits (252), Expect = e-141
Identities = 252/252 (100%)
Strand = Plus / Plus


Query: 492 cccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgat 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgat 551


Query: 552 cgcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaaca 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaaca 611


Query: 612 acaagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaac 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acaagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaac 671


Query: 672 aaatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatt 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatt 731


Query: 732 agatcttaacct 743
||||||||||||
Sbjct: 732 agatcttaacct 743


Score = 317 bits (160), Expect = 2e-86
Identities = 160/160 (100%)
Strand = Plus / Plus


Query: 1 tatgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccc 60


Query: 61 acatttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acatttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaa 120


Query: 121 caatacaccagaaatgattcaatctcaaagtgaaaatacc 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatacaccagaaatgattcaatctcaaagtgaaaatacc 160


Score = 226 bits (114), Expect = 5e-59
Identities = 114/114 (100%)
Strand = Plus / Plus


Query: 776 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 835


Query: 836 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataata 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataata 889


Score = 182 bits (92), Expect = 6e-46
Identities = 92/92 (100%)
Strand = Plus / Plus


Query: 979 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 1038


Query: 1039 agtggatcatcttcaactaattctgaatgttc 1070
||||||||||||||||||||||||||||||||
Sbjct: 1039 agtggatcatcttcaactaattctgaatgttc 1070


Score = 159 bits (80), Expect = 9e-39
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 1147 ggtacaaaagataaagatgaaaatgattcttgtgaatcaccaagagttacaccaattaaa 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 ggtacaaaagataaagatgaaaatgattcttgtgaatcaccaagagttacaccaattaaa 1206


Query: 1207 tgtttttaaaatttcattct 1226
||||||||||||||||||||
Sbjct: 1207 tgtttttaaaatttcattct 1226


Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 216 ctccatattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttcatttaatc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctccatattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttcatttaatc 275


Query: 276 atttagatttaaatagta 293
||||||||||||||||||
Sbjct: 276 atttagatttaaatagta 293


Score = 89.7 bits (45), Expect = 7e-18
Identities = 45/45 (100%)
Strand = Plus / Plus


Query: 356 gatgataaattcgatacaaatgcattaaaattgtcaaatacaatg 400
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gatgataaattcgatacaaatgcattaaaattgtcaaatacaatg 400


Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus


Query: 922 aaaaataatcaacaatgtagtggtttttcacattttt 958
|||||||||||||||||||||||||||||||||||||
Sbjct: 922 aaaaataatcaacaatgtagtggtttttcacattttt 958


Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 1249 attaataaaatttgtaaatactttaataa 1277
|||||||||||||||||||||||||||||
Sbjct: 1249 attaataaaatttgtaaatactttaataa 1277


Score = 38.2 bits (19), Expect = 0.023
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 867 taaaaataatgataataataata 889
|||||||||| ||||||||||||
Sbjct: 406 taaaaataataataataataata 428


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 413 aataataataataataata 431


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 419 aataataataataataata 437


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 425 aataataataataataata 443


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 434 aataataataataataata 452


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 449 aataataataataataata 467


Score = 30.2 bits (15), Expect = 5.6
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 863 atagtaaaaataatgataataataata 889
||||||| || ||| ||||||||||||
Sbjct: 1097 atagtaacaacaataataataataata 1123


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 437 aataataataataataata 455


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 416 aataataataataataata 434


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 335 aataataataataataata 353


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 452 aataataataataataata 470


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 458 aataataataataataata 476


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 455 aataataataataataata 473


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 443 aataataataataataata 461


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 431 aataataataataataata 449


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 428 aataataataataataata 446


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 1108 aataataataataataata 1126


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 870 aaataatgataataataat 888
||||||| |||||||||||
Sbjct: 960 aaataataataataataat 978


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 446 aataataataataataata 464


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 422 aataataataataataata 440


Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 871 aataatgataataataata 889
|||||| ||||||||||||
Sbjct: 440 aataataataataataata 458


>Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
Length = 1212

Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 863 atagtaaaaataatgataataataata 889
||||||| |||||||||||||||||||
Sbjct: 1033 atagtaataataatgataataataata 1059


>Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Contig-U11842-1Q.Seq.d
Length = 1222

Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 863 atagtaaaaataatgataataataata 889
||||||| |||||||||||||||||||
Sbjct: 291 atagtaataataatgataataataata 317


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,080
Number of Sequences: 6905
Number of extensions: 35080
Number of successful extensions: 11962
Number of sequences better than 10.0: 1493
length of query: 1277
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1261
effective length of database: 5,564,391
effective search space: 7016697051
effective search space used: 7016697051
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA
Query= Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d
(1277 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(U38197) Dictyostelium discoideum protein tyrosine phosphata... 500 0.0 7
(BJ444718) Dictyostelium discoideum cDNA clone:ddv57b10, 3' ... 502 0.0 5
(BJ446119) Dictyostelium discoideum cDNA clone:ddv61p16, 3' ... 432 0.0 6
(BJ382292) Dictyostelium discoideum cDNA clone:ddc44c11, 3' ... 274 0.0 6
(BJ393324) Dictyostelium discoideum cDNA clone:dds30m22, 5' ... 305 2e-78 1
(BJ367792) Dictyostelium discoideum cDNA clone:ddc44c11, 5' ... 103 5e-28 3
(AC226288) Tachyglossus aculeatus clone TA_Ba-383M9, WORKING... 56 0.003 1
(AF361474) Dictyostelium discoideum receptor histidine kinas... 38 0.007 5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 42 0.009 4
(CU633608) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 54 0.013 1
(EG905922) EST_ssal_evf_8487 ssalevf mixed_tissue Salmo sala... 42 0.018 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 0.038 5
(AC177347) Strongylocentrotus purpuratus clone R3-46P9, WORK... 52 0.053 1
(AC177346) Strongylocentrotus purpuratus clone R3-46P4, WORK... 52 0.053 1
(AZ155544) SP_0002_A2_D09_SP6E Strongylocentrotus purpuratus... 52 0.053 1
(EK486392) 1095479002385 Global-Ocean-Sampling_GS-32-01-01-1... 52 0.053 1
(FE104549) LV_HC_RA041K23f Litopenaeus vannamei hemocyte cDN... 52 0.053 1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 0.079 4
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 40 0.12 5
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 44 0.12 5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 38 0.19 6
(AC224516) Bos taurus clone CH240-483E20, WORKING DRAFT SEQU... 50 0.21 1
(AC184427) Strongylocentrotus purpuratus clone R3-3078O6, WO... 50 0.21 1
(AC184420) Strongylocentrotus purpuratus clone R3-3114A21, W... 50 0.21 1
(AC184206) Strongylocentrotus purpuratus clone R3-3026A14, W... 50 0.21 1
(AC180960) Strongylocentrotus purpuratus clone R3-3026L13, W... 50 0.21 1
(AC180510) Strongylocentrotus purpuratus clone R3-30A5, WORK... 50 0.21 1
(AC179828) Strongylocentrotus purpuratus clone R3-1012G5, WO... 50 0.21 1
(AC174006) Strongylocentrotus purpuratus clone R3-30C7, WORK... 50 0.21 1
(AC173564) Bos taurus clone CH240-528I7, WORKING DRAFT SEQUE... 50 0.21 1
(AC173235) Bos taurus clone CH240-525H9, WORKING DRAFT SEQUE... 50 0.21 1
(AC168611) Strongylocentrotus purpuratus clone R3-3046G5, WO... 50 0.21 1
(ED449250) AUAC-aas59f05.b1 Ascaris suum whole genome shotgu... 50 0.21 1
(ED215605) AUAC-aal52e10.b1 Ascaris suum whole genome shotgu... 50 0.21 1
(ED153929) AUAC-aat31d04.g1 Ascaris suum whole genome shotgu... 50 0.21 1
(CZ985858) 203414 Tomato MboI BAC Library Solanum lycopersic... 50 0.21 1
(AG626482) Macaca fuscata fuscata DNA, clone: MSB2-023G07_F,... 50 0.21 1
(BJ379975) Dictyostelium discoideum cDNA clone:ddc36i16, 3' ... 38 0.21 2
(AF029726) Dictyostelium discoideum histidine kinase C (dhkC... 38 0.25 4
(AM451893) Vitis vinifera contig VV78X035256.5, whole genome... 40 0.37 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.40 7
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.42 6
(CU302202) Zebrafish DNA sequence from clone DKEY-156M2 in l... 36 0.45 7
(AM445243) Vitis vinifera contig VV78X260659.9, whole genome... 42 0.45 2
(AC178172) Strongylocentrotus purpuratus clone R3-3081P23, W... 36 0.46 2
(BJ408100) Dictyostelium discoideum cDNA clone:dds44o15, 3' ... 40 0.49 3
(AC174235) Strongylocentrotus purpuratus clone R3-1036D3, WO... 46 0.58 4
(EY451145) CBAZ479.rev CBAZ Tubifex tubifex Embryos and juve... 36 0.67 3
(EK218141) 1095460126640 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.68 2
(CV746716) SJL_31_006__1-5__19.T7_018.ab1 SJL Schistosoma ja... 44 0.73 2
(BJ354142) Dictyostelium discoideum cDNA clone:dda52l18, 3' ... 40 0.74 2
(AY428796) Dictyostelium discoideum DIF insensitive mutant A... 34 0.75 3
(BJ401274) Dictyostelium discoideum cDNA clone:dds22p15, 3' ... 40 0.80 2
(BJ349760) Dictyostelium discoideum cDNA clone:dda37f15, 3' ... 40 0.82 2
(CU694202) Zebrafish DNA sequence from clone CH1073-483D10. 48 0.83 1
(AC183804) Pan troglodytes BAC clone CH251-67P16 from chromo... 48 0.83 1
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 48 0.83 1
(AC008268) Homo sapiens BAC clone RP11-34G16 from 2, complet... 48 0.83 1
(AC157107) Bos taurus clone CH240-60I15, WORKING DRAFT SEQUE... 48 0.83 1
(AC128891) Rattus norvegicus clone CH230-54A17, *** SEQUENCI... 48 0.83 1
(AC098302) Rattus norvegicus clone CH230-1N1, *** SEQUENCING... 48 0.83 1
(CU855514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.83 1
(CU571144) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.83 1
(AC215977) Felis catus clone RP86-49B19, WORKING DRAFT SEQUE... 48 0.83 1
(AC215769) Felis catus clone RP86-102C7, WORKING DRAFT SEQUE... 48 0.83 1
(AC170393) Bos taurus clone CH240-217P3, WORKING DRAFT SEQUE... 48 0.83 1
(CT345054) Sus scrofa genomic clone CH242-34F15, genomic sur... 48 0.83 1
(BG937240) jh_27132.z1 Penaeus chinensis' cephalothorax cDNA... 48 0.83 1
(CV738875) SJAL_017_24.T7 SJL Schistosoma japonicum cDNA, mR... 44 0.88 2
(AB010076) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 0.95 5
(AC115578) Dictyostelium discoideum chromosome 2 map complem... 36 1.4 4
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 1.8 7
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 1.8 4
(AJ245435) Plasmodium falciparum gc-alpha gene for guanylyl ... 44 1.8 3
(AC149950) Strongylocentrotus purpuratus clone R3-32B18, WOR... 42 1.9 6
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 42 1.9 6
(EY321672) CAWX8030.rev CAWX Helobdella robusta Primary Earl... 34 2.1 3
(AL132955) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 46 2.1 4
(CZ527451) SRAA-aac49b02.b1 Strongyloides ratti whole genome... 36 2.2 2
(BX571817) Zebrafish DNA sequence from clone DKEY-287H13 in ... 44 2.2 4
(AC198435) MACACA MULATTA BAC clone CH250-163A12 from chromo... 44 2.4 2
(DW007227) SGP296725 Atlantic salmon Brain cDNA library Salm... 38 2.5 2
(AC140678) Mus musculus BAC clone RP24-553I16 from chromosom... 36 2.6 5
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 2.6 8
(CU469407) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.6 5
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 2.7 4
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 46 2.7 6
(AC020079) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 2.8 3
(AU268002) Dictyostelium discoideum vegetative cDNA clone:VS... 36 3.0 3
(FE747091) CAYC4130.b1 CAYC Petrolisthes cinctipes heart, ne... 36 3.2 2
(EI923472) VUH2-59H15TV VUUBBa (VUH2) Vigna unguiculata geno... 44 3.2 2
(CT573300) Zebrafish DNA sequence from clone CH211-140I2 in ... 46 3.3 1
(CT009620) Zebrafish DNA sequence from clone CH73-187F10 in ... 46 3.3 1
(CR855391) Zebrafish DNA sequence from clone DKEY-81N5 in li... 46 3.3 1
(CR407701) Zebrafish DNA sequence from clone DKEY-160O24 in ... 46 3.3 1
(BX901968) Zebrafish DNA sequence from clone DKEYP-59C12 in ... 46 3.3 1
(BX324213) Zebrafish DNA sequence from clone DKEY-102C8 in l... 46 3.3 1
(AL954634) Zebrafish DNA sequence from clone DKEY-58C20 in l... 46 3.3 1
(AL807237) Mouse DNA sequence from clone RP23-384O9 on chrom... 46 3.3 1
(AC135187) Mus musculus BAC clone RP24-263A3 from 5, complet... 46 3.3 1

>(U38197) Dictyostelium discoideum protein tyrosine phosphatase (PTP3)
mRNA, complete cds.
Length = 2970

Score = 500 bits (252), Expect(7) = 0.0
Identities = 252/252 (100%)
Strand = Plus / Plus


Query: 493 ccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgatc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 ccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgatc 2307


Query: 553 gcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaacaa 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2308 gcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaacaa 2367


Query: 613 caagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaaca 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2368 caagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaaca 2427


Query: 673 aatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatta 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 aatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatta 2487


Query: 733 gatcttaacctt 744
||||||||||||
Sbjct: 2488 gatcttaacctt 2499

Score = 303 bits (153), Expect(7) = 0.0
Identities = 153/153 (100%)
Strand = Plus / Plus


Query: 2 atgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccca 60


Query: 62 catttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaac 120


Query: 122 aatacaccagaaatgattcaatctcaaagtgaa 154
|||||||||||||||||||||||||||||||||
Sbjct: 121 aatacaccagaaatgattcaatctcaaagtgaa 153

Score = 224 bits (113), Expect(7) = 0.0
Identities = 113/113 (100%)
Strand = Plus / Plus


Query: 776 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 2590


Query: 836 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataat 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataat 2643

Score = 182 bits (92), Expect(7) = 0.0
Identities = 92/92 (100%)
Strand = Plus / Plus


Query: 979 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2734 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 2793


Query: 1039 agtggatcatcttcaactaattctgaatgttc 1070
||||||||||||||||||||||||||||||||
Sbjct: 2794 agtggatcatcttcaactaattctgaatgttc 2825

Score = 95.6 bits (48), Expect(7) = 0.0
Identities = 51/52 (98%)
Strand = Plus / Plus


Query: 216 ctccatattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttc 267
||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctccagattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttc 266

Score = 89.7 bits (45), Expect(7) = 0.0
Identities = 45/45 (100%)
Strand = Plus / Plus


Query: 1171 gattcttgtgaatcaccaagagttacaccaattaaatgtttttaa 1215
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2926 gattcttgtgaatcaccaagagttacaccaattaaatgtttttaa 2970

Score = 44.1 bits (22), Expect(7) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 937 tgtagtggtttttcacattttt 958
||||||||||||||||||||||
Sbjct: 2692 tgtagtggtttttcacattttt 2713

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,009,843,964
Number of extensions: 70827765
Number of successful extensions: 8980843
Number of sequences better than 10.0: 220
Length of query: 1277
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1253
Effective length of database: 97,308,875,965
Effective search space: 121928021584145
Effective search space used: 121928021584145
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d
(1277 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

U38197_1(U38197|pid:none) Dictyostelium discoideum protein tyros... 142 2e-32
(P54637) RecName: Full=Tyrosine-protein phosphatase 3; ... 142 2e-32

>U38197_1(U38197|pid:none) Dictyostelium discoideum protein tyrosine
phosphatase (PTP3) mRNA, complete cds.
Length = 989

Score = 142 bits (359), Expect = 2e-32
Identities = 79/125 (63%), Positives = 79/125 (63%)
Frame = +1

Query: 493 PLTFTPKDFQSSISPSTDMIASLSIITQMTQTLKFPPQQQQDNPFXXXXXXXXXXXLNST 672
PLTFTPKDFQSSISPSTDMIASLSIITQMTQTLKFPPQQQQDNPF LNST
Sbjct: 750 PLTFTPKDFQSSISPSTDMIASLSIITQMTQTLKFPPQQQQDNPFSKSSIKISPSPLNST 809

Query: 673 NISIPKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSNSIKFPPVTSLSSCH 852
NISIPKN MSSNSIKFPPVTSLSSCH
Sbjct: 810 NISIPKNQQFQHPFQIQPQLDLNLQQQQQQSSQQLNDNPPLNMSSNSIKFPPVTSLSSCH 869

Query: 853 LFEDS 867
LFEDS
Sbjct: 870 LFEDS 874

Score = 102 bits (254), Expect = 3e-20
Identities = 63/136 (46%), Positives = 63/136 (46%)
Frame = +2

Query: 2 MISSSMSYRHSTNSVYTLNPHLNXXXXXXXXXXXXXFYANNTPEMIQSQSEXXXXXXXXX 181
MISSSMSYRHSTNSVYTLNPHLN FYANNTPEMIQSQSE
Sbjct: 1 MISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNTNNINN 60

Query: 182 XXXXXXXXXXXXPYXXXXXXXXXXXXXXXFNHLDLXXXXXXXXXXXXXXXXXXXXXXXDD 361
P FNHLDL DD
Sbjct: 61 SSSNINNNNNNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNNDD 120

Query: 362 KFDTNALKLSNTMIIK 409
KFDTNALKLSNTMIIK
Sbjct: 121 KFDTNALKLSNTMIIK 136

Score = 50.1 bits (118), Expect = 2e-04
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1

Query: 1150 TKDKDENDSCESPRVTPIKCF 1212
TKDKDENDSCESPRVTPIKCF
Sbjct: 969 TKDKDENDSCESPRVTPIKCF 989

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 938,671,148
Number of extensions: 10857889
Number of successful extensions: 22258
Number of sequences better than 10.0: 2
Number of HSP's gapped: 22248
Number of HSP's successfully gapped: 6
Length of query: 425
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 294
Effective length of database: 627,191,635
Effective search space: 184394340690
Effective search space used: 184394340690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.82 gvh: 0.32 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.50 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
16.0 %: cytoplasmic
16.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for Contig-U11827-1 is mit

VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0