Contig-U11827-1 |
Contig ID |
Contig-U11827-1 |
Contig update |
2002.12.18 |
Contig sequence |
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Gap |
gap included |
Contig length |
1267 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
4 |
Number of EST |
5 |
Link to clone list |
U11827 |
List of clone(s) |
|
Translated Amino Acid sequence |
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Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
Query= Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d (1277 letters)
Database: CSM 6905 sequences; 5,674,871 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti... 500 e-141 Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti... 46 9e-05 Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Conti... 46 9e-05 Contig-U11262-1 (Contig-U11262-1Q) /CSM_Contig/Conti... 44 4e-04 Contig-U09020-1 (Contig-U09020-1Q) /CSM_Contig/Conti... 44 4e-04 Contig-U06528-1 (Contig-U06528-1Q) /CSM_Contig/Conti... 44 4e-04 Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti... 42 0.001 Contig-U11164-1 (Contig-U11164-1Q) /CSM_Contig/Conti... 42 0.001 Contig-U13032-1 (Contig-U13032-1Q) /CSM_Contig/Conti... 40 0.006 Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti... 40 0.006
>Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d Length = 1277
Score = 500 bits (252), Expect = e-141 Identities = 252/252 (100%) Strand = Plus / Plus
Query: 492 cccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgat 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 cccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgat 551
Query: 552 cgcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaaca 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 cgcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaaca 611
Query: 612 acaagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaac 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 612 acaagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaac 671
Query: 672 aaatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatt 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 672 aaatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatt 731
Query: 732 agatcttaacct 743 |||||||||||| Sbjct: 732 agatcttaacct 743
Score = 317 bits (160), Expect = 2e-86 Identities = 160/160 (100%) Strand = Plus / Plus
Query: 1 tatgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccc 60
Query: 61 acatttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acatttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaa 120
Query: 121 caatacaccagaaatgattcaatctcaaagtgaaaatacc 160 |||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caatacaccagaaatgattcaatctcaaagtgaaaatacc 160
Score = 226 bits (114), Expect = 5e-59 Identities = 114/114 (100%) Strand = Plus / Plus
Query: 776 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 835
Query: 836 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataata 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 836 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataata 889
Score = 182 bits (92), Expect = 6e-46 Identities = 92/92 (100%) Strand = Plus / Plus
Query: 979 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 1038
Query: 1039 agtggatcatcttcaactaattctgaatgttc 1070 |||||||||||||||||||||||||||||||| Sbjct: 1039 agtggatcatcttcaactaattctgaatgttc 1070
Score = 159 bits (80), Expect = 9e-39 Identities = 80/80 (100%) Strand = Plus / Plus
Query: 1147 ggtacaaaagataaagatgaaaatgattcttgtgaatcaccaagagttacaccaattaaa 1206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1147 ggtacaaaagataaagatgaaaatgattcttgtgaatcaccaagagttacaccaattaaa 1206
Query: 1207 tgtttttaaaatttcattct 1226 |||||||||||||||||||| Sbjct: 1207 tgtttttaaaatttcattct 1226
Score = 155 bits (78), Expect = 1e-37 Identities = 78/78 (100%) Strand = Plus / Plus
Query: 216 ctccatattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttcatttaatc 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 ctccatattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttcatttaatc 275
Query: 276 atttagatttaaatagta 293 |||||||||||||||||| Sbjct: 276 atttagatttaaatagta 293
Score = 89.7 bits (45), Expect = 7e-18 Identities = 45/45 (100%) Strand = Plus / Plus
Query: 356 gatgataaattcgatacaaatgcattaaaattgtcaaatacaatg 400 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 gatgataaattcgatacaaatgcattaaaattgtcaaatacaatg 400
Score = 73.8 bits (37), Expect = 4e-13 Identities = 37/37 (100%) Strand = Plus / Plus
Query: 922 aaaaataatcaacaatgtagtggtttttcacattttt 958 ||||||||||||||||||||||||||||||||||||| Sbjct: 922 aaaaataatcaacaatgtagtggtttttcacattttt 958
Score = 58.0 bits (29), Expect = 2e-08 Identities = 29/29 (100%) Strand = Plus / Plus
Query: 1249 attaataaaatttgtaaatactttaataa 1277 ||||||||||||||||||||||||||||| Sbjct: 1249 attaataaaatttgtaaatactttaataa 1277
Score = 38.2 bits (19), Expect = 0.023 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 867 taaaaataatgataataataata 889 |||||||||| |||||||||||| Sbjct: 406 taaaaataataataataataata 428
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 413 aataataataataataata 431
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 419 aataataataataataata 437
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 425 aataataataataataata 443
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 434 aataataataataataata 452
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 449 aataataataataataata 467
Score = 30.2 bits (15), Expect = 5.6 Identities = 24/27 (88%) Strand = Plus / Plus
Query: 863 atagtaaaaataatgataataataata 889 ||||||| || ||| |||||||||||| Sbjct: 1097 atagtaacaacaataataataataata 1123
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 437 aataataataataataata 455
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 416 aataataataataataata 434
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 335 aataataataataataata 353
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 452 aataataataataataata 470
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 458 aataataataataataata 476
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 455 aataataataataataata 473
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 443 aataataataataataata 461
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 431 aataataataataataata 449
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 428 aataataataataataata 446
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 1108 aataataataataataata 1126
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 870 aaataatgataataataat 888 ||||||| ||||||||||| Sbjct: 960 aaataataataataataat 978
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 446 aataataataataataata 464
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 422 aataataataataataata 440
Score = 30.2 bits (15), Expect = 5.6 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 871 aataatgataataataata 889 |||||| |||||||||||| Sbjct: 440 aataataataataataata 458
>Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d Length = 1212
Score = 46.1 bits (23), Expect = 9e-05 Identities = 26/27 (96%) Strand = Plus / Plus
Query: 863 atagtaaaaataatgataataataata 889 ||||||| ||||||||||||||||||| Sbjct: 1033 atagtaataataatgataataataata 1059
>Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Contig-U11842-1Q.Seq.d Length = 1222
Score = 46.1 bits (23), Expect = 9e-05 Identities = 26/27 (96%) Strand = Plus / Plus
Query: 863 atagtaaaaataatgataataataata 889 ||||||| ||||||||||||||||||| Sbjct: 291 atagtaataataatgataataataata 317
Database: CSM Posted date: Jun 9, 2004 7:35 PM Number of letters in database: 5,674,871 Number of sequences in database: 6905 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 35,080 Number of Sequences: 6905 Number of extensions: 35080 Number of successful extensions: 11962 Number of sequences better than 10.0: 1493 length of query: 1277 length of database: 5,674,871 effective HSP length: 16 effective length of query: 1261 effective length of database: 5,564,391 effective search space: 7016697051 effective search space used: 7016697051 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 15 (30.2 bits)
|
dna update |
2008.11.27 |
Homology vs DNA |
Query= Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Contig-U11827-1Q.Seq.d (1277 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(U38197) Dictyostelium discoideum protein tyrosine phosphata... 500 0.0 7 (BJ444718) Dictyostelium discoideum cDNA clone:ddv57b10, 3' ... 502 0.0 5 (BJ446119) Dictyostelium discoideum cDNA clone:ddv61p16, 3' ... 432 0.0 6 (BJ382292) Dictyostelium discoideum cDNA clone:ddc44c11, 3' ... 274 0.0 6 (BJ393324) Dictyostelium discoideum cDNA clone:dds30m22, 5' ... 305 2e-78 1 (BJ367792) Dictyostelium discoideum cDNA clone:ddc44c11, 5' ... 103 5e-28 3 (AC226288) Tachyglossus aculeatus clone TA_Ba-383M9, WORKING... 56 0.003 1 (AF361474) Dictyostelium discoideum receptor histidine kinas... 38 0.007 5 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 42 0.009 4 (CU633608) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 54 0.013 1 (EG905922) EST_ssal_evf_8487 ssalevf mixed_tissue Salmo sala... 42 0.018 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 0.038 5 (AC177347) Strongylocentrotus purpuratus clone R3-46P9, WORK... 52 0.053 1 (AC177346) Strongylocentrotus purpuratus clone R3-46P4, WORK... 52 0.053 1 (AZ155544) SP_0002_A2_D09_SP6E Strongylocentrotus purpuratus... 52 0.053 1 (EK486392) 1095479002385 Global-Ocean-Sampling_GS-32-01-01-1... 52 0.053 1 (FE104549) LV_HC_RA041K23f Litopenaeus vannamei hemocyte cDN... 52 0.053 1 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 0.079 4 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 40 0.12 5 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 44 0.12 5 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 38 0.19 6 (AC224516) Bos taurus clone CH240-483E20, WORKING DRAFT SEQU... 50 0.21 1 (AC184427) Strongylocentrotus purpuratus clone R3-3078O6, WO... 50 0.21 1 (AC184420) Strongylocentrotus purpuratus clone R3-3114A21, W... 50 0.21 1 (AC184206) Strongylocentrotus purpuratus clone R3-3026A14, W... 50 0.21 1 (AC180960) Strongylocentrotus purpuratus clone R3-3026L13, W... 50 0.21 1 (AC180510) Strongylocentrotus purpuratus clone R3-30A5, WORK... 50 0.21 1 (AC179828) Strongylocentrotus purpuratus clone R3-1012G5, WO... 50 0.21 1 (AC174006) Strongylocentrotus purpuratus clone R3-30C7, WORK... 50 0.21 1 (AC173564) Bos taurus clone CH240-528I7, WORKING DRAFT SEQUE... 50 0.21 1 (AC173235) Bos taurus clone CH240-525H9, WORKING DRAFT SEQUE... 50 0.21 1 (AC168611) Strongylocentrotus purpuratus clone R3-3046G5, WO... 50 0.21 1 (ED449250) AUAC-aas59f05.b1 Ascaris suum whole genome shotgu... 50 0.21 1 (ED215605) AUAC-aal52e10.b1 Ascaris suum whole genome shotgu... 50 0.21 1 (ED153929) AUAC-aat31d04.g1 Ascaris suum whole genome shotgu... 50 0.21 1 (CZ985858) 203414 Tomato MboI BAC Library Solanum lycopersic... 50 0.21 1 (AG626482) Macaca fuscata fuscata DNA, clone: MSB2-023G07_F,... 50 0.21 1 (BJ379975) Dictyostelium discoideum cDNA clone:ddc36i16, 3' ... 38 0.21 2 (AF029726) Dictyostelium discoideum histidine kinase C (dhkC... 38 0.25 4 (AM451893) Vitis vinifera contig VV78X035256.5, whole genome... 40 0.37 3 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.40 7 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.42 6 (CU302202) Zebrafish DNA sequence from clone DKEY-156M2 in l... 36 0.45 7 (AM445243) Vitis vinifera contig VV78X260659.9, whole genome... 42 0.45 2 (AC178172) Strongylocentrotus purpuratus clone R3-3081P23, W... 36 0.46 2 (BJ408100) Dictyostelium discoideum cDNA clone:dds44o15, 3' ... 40 0.49 3 (AC174235) Strongylocentrotus purpuratus clone R3-1036D3, WO... 46 0.58 4 (EY451145) CBAZ479.rev CBAZ Tubifex tubifex Embryos and juve... 36 0.67 3 (EK218141) 1095460126640 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.68 2 (CV746716) SJL_31_006__1-5__19.T7_018.ab1 SJL Schistosoma ja... 44 0.73 2 (BJ354142) Dictyostelium discoideum cDNA clone:dda52l18, 3' ... 40 0.74 2 (AY428796) Dictyostelium discoideum DIF insensitive mutant A... 34 0.75 3 (BJ401274) Dictyostelium discoideum cDNA clone:dds22p15, 3' ... 40 0.80 2 (BJ349760) Dictyostelium discoideum cDNA clone:dda37f15, 3' ... 40 0.82 2 (CU694202) Zebrafish DNA sequence from clone CH1073-483D10. 48 0.83 1 (AC183804) Pan troglodytes BAC clone CH251-67P16 from chromo... 48 0.83 1 (AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 48 0.83 1 (AC008268) Homo sapiens BAC clone RP11-34G16 from 2, complet... 48 0.83 1 (AC157107) Bos taurus clone CH240-60I15, WORKING DRAFT SEQUE... 48 0.83 1 (AC128891) Rattus norvegicus clone CH230-54A17, *** SEQUENCI... 48 0.83 1 (AC098302) Rattus norvegicus clone CH230-1N1, *** SEQUENCING... 48 0.83 1 (CU855514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.83 1 (CU571144) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.83 1 (AC215977) Felis catus clone RP86-49B19, WORKING DRAFT SEQUE... 48 0.83 1 (AC215769) Felis catus clone RP86-102C7, WORKING DRAFT SEQUE... 48 0.83 1 (AC170393) Bos taurus clone CH240-217P3, WORKING DRAFT SEQUE... 48 0.83 1 (CT345054) Sus scrofa genomic clone CH242-34F15, genomic sur... 48 0.83 1 (BG937240) jh_27132.z1 Penaeus chinensis' cephalothorax cDNA... 48 0.83 1 (CV738875) SJAL_017_24.T7 SJL Schistosoma japonicum cDNA, mR... 44 0.88 2 (AB010076) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 0.95 5 (AC115578) Dictyostelium discoideum chromosome 2 map complem... 36 1.4 4 (AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 1.8 7 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 1.8 4 (AJ245435) Plasmodium falciparum gc-alpha gene for guanylyl ... 44 1.8 3 (AC149950) Strongylocentrotus purpuratus clone R3-32B18, WOR... 42 1.9 6 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 42 1.9 6 (EY321672) CAWX8030.rev CAWX Helobdella robusta Primary Earl... 34 2.1 3 (AL132955) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 46 2.1 4 (CZ527451) SRAA-aac49b02.b1 Strongyloides ratti whole genome... 36 2.2 2 (BX571817) Zebrafish DNA sequence from clone DKEY-287H13 in ... 44 2.2 4 (AC198435) MACACA MULATTA BAC clone CH250-163A12 from chromo... 44 2.4 2 (DW007227) SGP296725 Atlantic salmon Brain cDNA library Salm... 38 2.5 2 (AC140678) Mus musculus BAC clone RP24-553I16 from chromosom... 36 2.6 5 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 2.6 8 (CU469407) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.6 5 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 2.7 4 (AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 46 2.7 6 (AC020079) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 2.8 3 (AU268002) Dictyostelium discoideum vegetative cDNA clone:VS... 36 3.0 3 (FE747091) CAYC4130.b1 CAYC Petrolisthes cinctipes heart, ne... 36 3.2 2 (EI923472) VUH2-59H15TV VUUBBa (VUH2) Vigna unguiculata geno... 44 3.2 2 (CT573300) Zebrafish DNA sequence from clone CH211-140I2 in ... 46 3.3 1 (CT009620) Zebrafish DNA sequence from clone CH73-187F10 in ... 46 3.3 1 (CR855391) Zebrafish DNA sequence from clone DKEY-81N5 in li... 46 3.3 1 (CR407701) Zebrafish DNA sequence from clone DKEY-160O24 in ... 46 3.3 1 (BX901968) Zebrafish DNA sequence from clone DKEYP-59C12 in ... 46 3.3 1 (BX324213) Zebrafish DNA sequence from clone DKEY-102C8 in l... 46 3.3 1 (AL954634) Zebrafish DNA sequence from clone DKEY-58C20 in l... 46 3.3 1 (AL807237) Mouse DNA sequence from clone RP23-384O9 on chrom... 46 3.3 1 (AC135187) Mus musculus BAC clone RP24-263A3 from 5, complet... 46 3.3 1
>(U38197) Dictyostelium discoideum protein tyrosine phosphatase (PTP3) mRNA, complete cds. Length = 2970
Score = 500 bits (252), Expect(7) = 0.0 Identities = 252/252 (100%) Strand = Plus / Plus
Query: 493 ccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2248 ccattaacctttacaccaaaagattttcaatcttcaatttcaccttcaaccgatatgatc 2307
Query: 553 gcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaacaa 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2308 gcctccttatcaattataacccaaatgactcaaactctaaaattcccaccacaacaacaa 2367
Query: 613 caagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaaca 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2368 caagataatcctttttcaaaatcatcaattaaaatttcaccttcacctttaaattcaaca 2427
Query: 673 aatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatta 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2428 aatatatcaataccgaagaatcaacaatttcaacatccttttcaaattcaaccacaatta 2487
Query: 733 gatcttaacctt 744 |||||||||||| Sbjct: 2488 gatcttaacctt 2499
Score = 303 bits (153), Expect(7) = 0.0 Identities = 153/153 (100%) Strand = Plus / Plus
Query: 2 atgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccca 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgatatcaagttctatgagctacagacatagtacaaattcagtgtacacactgaaccca 60
Query: 62 catttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaac 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 catttgaatattccaatttcaacatcgacaacaattccaccaactagtttttatgcaaac 120
Query: 122 aatacaccagaaatgattcaatctcaaagtgaa 154 ||||||||||||||||||||||||||||||||| Sbjct: 121 aatacaccagaaatgattcaatctcaaagtgaa 153
Score = 224 bits (113), Expect(7) = 0.0 Identities = 113/113 (100%) Strand = Plus / Plus
Query: 776 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2531 taaatgataatccacctttaaatatgagtagtaatagcattaaatttccacctgtaacat 2590
Query: 836 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataat 888 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2591 ctttatcatcttgtcatttatttgaagatagtaaaaataatgataataataat 2643
Score = 182 bits (92), Expect(7) = 0.0 Identities = 92/92 (100%) Strand = Plus / Plus
Query: 979 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2734 gataacaatggttcttcaggtggaggatttaatggctcatttttgtttaatagtaacaac 2793
Query: 1039 agtggatcatcttcaactaattctgaatgttc 1070 |||||||||||||||||||||||||||||||| Sbjct: 2794 agtggatcatcttcaactaattctgaatgttc 2825
Score = 95.6 bits (48), Expect(7) = 0.0 Identities = 51/52 (98%) Strand = Plus / Plus
Query: 216 ctccatattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttc 267 ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 ctccagattcaatgtcgatgtcaacatctttatcttcatcaccatcagtttc 266
Score = 89.7 bits (45), Expect(7) = 0.0 Identities = 45/45 (100%) Strand = Plus / Plus
Query: 1171 gattcttgtgaatcaccaagagttacaccaattaaatgtttttaa 1215 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2926 gattcttgtgaatcaccaagagttacaccaattaaatgtttttaa 2970
Score = 44.1 bits (22), Expect(7) = 0.0 Identities = 22/22 (100%) Strand = Plus / Plus
Query: 937 tgtagtggtttttcacattttt 958 |||||||||||||||||||||| Sbjct: 2692 tgtagtggtttttcacattttt 2713
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,009,843,964 Number of extensions: 70827765 Number of successful extensions: 8980843 Number of sequences better than 10.0: 220 Length of query: 1277 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1253 Effective length of database: 97,308,875,965 Effective search space: 121928021584145 Effective search space used: 121928021584145 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
2 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |