| Contig-U11803-1 |
| Contig ID |
Contig-U11803-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
2011 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
2460685 |
| End point |
2462699 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
8 |
| Number of EST |
12 |
| Link to clone list |
U11803 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.27 |
| Homology vs DNA |
Query= Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Contig-U11803-1Q.Seq.d
(2021 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ369659) Dictyostelium discoideum cDNA clone:ddc51g08, 5' ... 1176 0.0 1
(BJ394698) Dictyostelium discoideum cDNA clone:dds36m05, 5' ... 952 0.0 2
(BJ397508) Dictyostelium discoideum cDNA clone:dds46g16, 5' ... 815 0.0 3
(BJ396854) Dictyostelium discoideum cDNA clone:dds44o02, 5' ... 456 0.0 4
(BJ367004) Dictyostelium discoideum cDNA clone:ddc41c01, 5' ... 521 0.0 3
(BJ408903) Dictyostelium discoideum cDNA clone:dds47h10, 3' ... 511 0.0 3
(BJ406705) Dictyostelium discoideum cDNA clone:dds36m05, 3' ... 511 0.0 4
(BJ408670) Dictyostelium discoideum cDNA clone:dds46g16, 3' ... 511 0.0 4
(BJ407955) Dictyostelium discoideum cDNA clone:dds44o02, 3' ... 511 0.0 4
(C85032) Dictyostelium discoideum slug cDNA, clone SSC102. 519 0.0 4
(BJ381279) Dictyostelium discoideum cDNA clone:ddc41c01, 3' ... 488 e-180 3
(BJ407296) Dictyostelium discoideum cDNA clone:dds38i02, 3' ... 468 e-174 3
(AC181871) Strongylocentrotus purpuratus clone R3-1019I20, W... 58 0.001 1
(AC179210) Strongylocentrotus purpuratus clone R3-4019O18, W... 58 0.001 1
(AC175973) Strongylocentrotus purpuratus clone R3-3035C9, WO... 58 0.001 1
(AC180269) Strongylocentrotus purpuratus clone R3-3123J22, W... 54 0.021 1
(AC181933) Strongylocentrotus purpuratus clone R3-1009F16, W... 52 0.084 1
(AC179825) Strongylocentrotus purpuratus clone R3-1012K7, WO... 52 0.084 1
(AC150440) Medicago truncatula chromosome 7 clone mth2-189e2... 42 0.12 4
(EY368990) CAXA12117.fwd CAXA Helobdella robusta Subtracted ... 34 0.25 2
(AC157960) Strongylocentrotus purpuratus clone R3-4002G5, WO... 50 0.33 1
(AC141973) Rattus norvegicus clone CH230-512G2, *** SEQUENCI... 50 0.33 1
(AC130085) Rattus norvegicus clone CH230-238O12, *** SEQUENC... 50 0.33 1
(AC181219) Strongylocentrotus purpuratus clone R3-4008P5, WO... 50 0.33 1
(AC180655) Strongylocentrotus purpuratus clone R3-3019L21, W... 50 0.33 1
(AC168406) Strongylocentrotus purpuratus clone R3-4002G5, WO... 50 0.33 1
(FE789125) CCAG16498.g1 CCAG Petrolisthes cinctipes heart, g... 50 0.33 1
(FE789124) CCAG16498.b3 CCAG Petrolisthes cinctipes heart, g... 50 0.33 1
(AM462305) Vitis vinifera, whole genome shotgun sequence, co... 44 0.38 2
(EV570450) RR4BJ45TF RR4(PB) Raphanus raphanistrum subsp. la... 38 0.58 2
(BB231036) Mus musculus 3 days neonate thymus cDNA, RIKEN fu... 46 0.90 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 0.95 17
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 40 1.0 11
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ... 42 1.1 4
(AC165361) Mus musculus BAC clone RP23-77H6 from chromosome ... 48 1.3 1
(AC124201) Mus musculus BAC clone RP23-329B24 from chromosom... 48 1.3 1
(AC121822) Mus musculus BAC clone RP23-465H5 from chromosome... 48 1.3 1
(AC101790) Mus musculus chromosome 8, clone RP24-163M14, com... 48 1.3 1
(AC128224) Rattus norvegicus clone CH230-497M8, WORKING DRAF... 48 1.3 1
(AC113727) Rattus norvegicus clone CH230-47O9, *** SEQUENCIN... 48 1.3 1
(AC180228) Strongylocentrotus purpuratus clone R3-36L15, WOR... 48 1.3 1
(AM652835) Entamoeba moshkovskii FIC GSS, clone mosh123b08.p1k. 48 1.3 1
(AM646523) Entamoeba moshkovskii FIC GSS, clone mosh039g07.p1k. 48 1.3 1
(EJ813646) 1093017503674 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.3 1
(EJ029548) 1095454041015 Global-Ocean-Sampling_GS-26-01-01-1... 48 1.3 1
(DX387898) Diversa 1104 Library 5 >3877_1111563_R_41498_B02_... 48 1.3 1
(CJ969936) Physcomitrella patens subsp. patens cDNA clone:PP... 48 1.3 1
(BY979801) Physcomitrella patens subsp. patens cDNA clone: P... 48 1.3 1
(BJ179192) Physcomitrella patens subsp. patens cDNA clone:pp... 48 1.3 1
(BJ176911) Physcomitrella patens subsp. patens cDNA clone:pp... 48 1.3 1
(AZ958295) 2M0225H04R Mouse 10kb plasmid UUGC2M library Mus ... 40 1.9 2
(CR847937) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.0 9
(AC186064) Canis Familiaris chromosome 2, clone XX-149D17, c... 34 2.6 2
(AC187308) Canis familiaris chromosome 2 clone XX-449A6 map ... 34 2.6 2
(AC190114) Canis Familiaris chromosome 2, clone XX-440P16, c... 34 2.6 2
(AC193672) Zea mays chromosome 6 clone CH201-179J13; ZMMBBc0... 36 2.6 2
(CU467857) Zebrafish DNA sequence from clone CH73-18H15 in l... 44 2.6 4
(AC137419) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 40 2.7 8
(CU302251) Zebrafish DNA sequence from clone CH1073-301I20 i... 34 2.8 2
(AC179416) Strongylocentrotus purpuratus clone R3-62D24, WOR... 38 3.0 7
(CR394541) Zebrafish DNA sequence from clone DKEY-51M5 in li... 36 3.5 4
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 40 4.3 6
(DB597213) Halocynthia roretzi cDNA clone:ma317o10, 3' end. 44 5.0 2
(CT737137) Zebrafish DNA sequence from clone DKEYP-44A8 in l... 46 5.2 1
(CT027573) Zebrafish DNA sequence from clone DKEY-177O9 in l... 46 5.2 1
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li... 46 5.2 1
(CR853298) Zebrafish DNA sequence from clone CH211-277B24 in... 46 5.2 1
(CR762429) Zebrafish DNA sequence from clone CH211-172J10. 46 5.2 1
(CR735144) Zebrafish DNA sequence from clone DKEY-241O6 in l... 46 5.2 1
(CR388417) Zebrafish DNA sequence from clone DKEY-211M6 in l... 46 5.2 1
(BX950224) Zebrafish DNA sequence from clone DKEY-284G18 in ... 46 5.2 1
(BX901972) Zebrafish DNA sequence from clone DKEY-24H22 in l... 46 5.2 1
(BX537273) Zebrafish DNA sequence from clone CH211-151F2 in ... 46 5.2 1
(BX248089) Zebrafish DNA sequence from clone DKEY-21K10 in l... 46 5.2 1
(BX000477) Zebrafish DNA sequence from clone CH211-59D8 in l... 46 5.2 1
(AL807378) Zebrafish DNA sequence from clone CH211-215A18 in... 46 5.2 1
(BC055955) Mus musculus RIKEN cDNA A130010J15 gene, mRNA (cD... 46 5.2 1
(AL928582) Mouse DNA sequence from clone RP23-235B20 on chro... 46 5.2 1
(AL365322) Mouse DNA sequence from clone RP23-282D4 on chrom... 46 5.2 1
(AC113110) Mus musculus chromosome 16, clone RP23-328A9, com... 46 5.2 1
(EU352840) Helianthus annuus NBS-LRR resistance-like protein... 46 5.2 1
(EU352828) Helianthus annuus NBS-LRR resistance-like protein... 46 5.2 1
(EF559704) Helianthus argophyllus NBS-LRR resistance-like pr... 46 5.2 1
(EF559654) Helianthus argophyllus NBS-LRR resistance-like pr... 46 5.2 1
(EF559425) Helianthus argophyllus NBS-LRR resistance-like pr... 46 5.2 1
(BT002385) Arabidopsis thaliana putative protein (At5g65410)... 46 5.2 1
(AB011479) Arabidopsis thaliana genomic DNA, chromosome 5, P... 46 5.2 1
(AC154869) Monodelphis domestica, clone XX-216E9, complete s... 46 5.2 1
(DQ137795) Schistosoma mansoni clone 94TAGA microsatellite s... 46 5.2 1
(DQ137784) Schistosoma mansoni clone 78TAGA microsatellite s... 46 5.2 1
(DQ137777) Schistosoma mansoni clone 69TAGA microsatellite s... 46 5.2 1
(DQ137755) Schistosoma mansoni clone 42TAGA microsatellite s... 46 5.2 1
(DQ137743) Schistosoma mansoni clone 28TAGA microsatellite s... 46 5.2 1
(DQ137729) Schistosoma mansoni clone 08TAGA microsatellite s... 46 5.2 1
(DQ137723) Schistosoma mansoni clone 01TAGA microsatellite s... 46 5.2 1
(AC007559) Homo sapiens BAC clone RP11-364J6 from 2, complet... 46 5.2 1
(AC160519) Lytechinus variegatus clone BAC 199M10, *** SEQUE... 46 5.2 1
(AC157963) Strongylocentrotus purpuratus clone R3-4002J19, W... 46 5.2 1
(AC124034) Rattus norvegicus clone CH230-169F9, WORKING DRAF... 46 5.2 1
(AC120273) Rattus norvegicus clone CH230-416I4, WORKING DRAF... 46 5.2 1
>(BJ369659) Dictyostelium discoideum cDNA clone:ddc51g08, 5' end,
single read.
Length = 603
Score = 1176 bits (593), Expect = 0.0
Identities = 600/603 (99%)
Strand = Plus / Plus
Query: 371 tctttcacataattcattgggtgctgaaggtttgtcattaattatttccgatataattaa 430
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctttcacataattcattgggtactgaaggtttgtcattaattatttccgatataattaa 60
Query: 431 aacaaatcgttccattacttggttaaatttatctcataataatttggaccaagatgatga 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacaaatcgttccattacttggttaaatttatctcataataatttggaccaagatgatga 120
Query: 491 tcattccataatggatgcattattatataatcaaaccattcaaacattggatttatccaa 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcattccataatggatgcattattatataatcaaaccattcaaacattggatttatccaa 180
Query: 551 taacgaataccaattgacattggatatatctaataatattaaattcatttattgaaaatt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taacgaataccaattgacattggatatatctaataatattaaattcatttattgaaaatt 240
Query: 611 gtcaatcaattactcatttaaatttttcacgtaatagtaaccgacatccaataagtggaa 670
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcaatcaattactcntttaaatttttcacgtaatagtaaccgacatccaataagtggaa 300
Query: 671 tttcaagagccttacaaataaaccaatcccttcgtcatattgatctttcatttatgtcaa 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcaagagccttacaaataaaccaatcccttcgtcatattgatctttcatttatgtcaa 360
Query: 731 ttgcaccacaagaatcgactgagctaattaaaactttaattgggtcaagatttttaacat 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgcaccacaagaatcgactgagctaattaaaactttaattgggtcaagatttttaacat 420
Query: 791 caattaatcttcaacaaactttactttcaactgttggcgaaacctttggaattagtatcg 850
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 caattaatcttcaacaaactttactttcaactgttggcgaaaccnttggaattagtatcg 480
Query: 851 taaattcattagccaaacgttataatgactacgacttggatgaagaagatggatggttta 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 taaattcattagccaaacgttataatgactacgacttggatgaagaagatggatggttta 540
Query: 911 agttttgttgattctaaaagtagtactacaacgacaacaaatactaatactactactatt 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agttttgttgattctaaaagtagtactacaacgacaacaaatactaatactactactatt 600
Query: 971 cca 973
|||
Sbjct: 601 cca 603
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,951,260,412
Number of extensions: 120083939
Number of successful extensions: 10394576
Number of sequences better than 10.0: 211
Length of query: 2021
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1997
Effective length of database: 97,308,875,965
Effective search space: 194325825302105
Effective search space used: 194325825302105
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 7. 1 |
| Homology vs Protein |
Query= Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Contig-U11803-1Q.Seq.d
(2021 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FJ004846_1(FJ004846|pid:none) Ictalurus punctatus NLRC3 receptor... 55 1e-09
BC160196_1(BC160196|pid:none) Synthetic construct Mus musculus c... 53 5e-09
(Q5DU56) RecName: Full=Protein NLRC3; 53 5e-09
AK079766_1(AK079766|pid:none) Mus musculus 0 day neonate thymus ... 52 5e-09
EU348832_1(EU348832|pid:none) Sus scrofa nucleotide-binding olig... 56 1e-08
CP000087_1029(CP000087|pid:none) Rickettsia bellii RML369-C, com... 63 4e-08
CP000849_411(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 63 4e-08
AF501291_1(AF501291|pid:none) Homo sapiens CARD15-like protein m... 55 4e-08
EU432548_11(EU432548|pid:none) Philodina roseola guanylyl cyclas... 62 1e-07
AF501292_1(AF501292|pid:none) Homo sapiens CARD15-like protein m... 55 3e-07
AM494972_448(AM494972|pid:none) Leishmania braziliensis chromoso... 60 4e-07
AY056236_1(AY056236|pid:none) Arabidopsis thaliana unknown prote... 56 4e-06
EU643474_20(EU643474|pid:none) Adineta vaga clone Av240_B G-prot... 55 7e-06
EU643483_23(EU643483|pid:none) Adineta vaga clone Av180_A AIG1-l... 54 2e-05
AM502254_692(AM502254|pid:none) Leishmania infantum chromosome 36. 54 2e-05
CR954207_82(CR954207|pid:none) Ostreococcus tauri strain OTTH059... 54 2e-05
CT005272_438(CT005272|pid:none) Leishmania major strain Friedlin... 53 4e-05
CP000080_288(CP000080|pid:none) Leishmania major strain Friedlin... 53 5e-05
BC166378_1(BC166378|pid:none) Xenopus tropicalis hypothetical pr... 52 6e-05
AC104642_21(AC104642|pid:none) Trypanosoma brucei chromosome 3 c... 43 7e-05
AM502247_310(AM502247|pid:none) Leishmania infantum chromosome 29. 50 2e-04
AM453162_2(AM453162|pid:none) Vitis vinifera contig VV78X048857.... 50 3e-04
CR954203_68(CR954203|pid:none) Ostreococcus tauri strain OTTH059... 49 7e-04
AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil ge... 40 0.001
(Q86W25) RecName: Full=NACHT, LRR and PYD domains-containing pro... 48 0.002
A45841(A45841) T-complex-associated-testes-expressed-1 protein -... 48 0.002
BC153732_1(BC153732|pid:none) Xenopus tropicalis hypothetical pr... 48 0.002
(A6H639) RecName: Full=T-complex-associated testis-expressed pro... 48 0.002
AK029938_1(AK029938|pid:none) Mus musculus adult male testis cDN... 47 0.002
AK057446_1(AK057446|pid:none) Homo sapiens cDNA FLJ32884 fis, cl... 47 0.003
AC006604_2(AC006604|pid:none) Caenorhabditis elegans cosmid C07F... 46 0.005
AF348166_1(AF348166|pid:none) Caenorhabditis elegans Toll-like r... 46 0.005
(Q1ZXD6) RecName: Full=Probable serine/threonine-protein kinase ... 46 0.006
(Q8BKR5) RecName: Full=Leucine-rich repeat-containing protein 68... 45 0.008
BC169296_1(BC169296|pid:none) Synthetic construct Homo sapiens c... 45 0.010
BC124387_1(BC124387|pid:none) Danio rerio si:ch211-234g24.1, mRN... 45 0.010
CP001324_560(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 45 0.010
(A0JPI9) RecName: Full=Uncharacterized protein C14orf166B homolo... 45 0.010
BC141792_1(BC141792|pid:none) Danio rerio si:ch211-234g24.1, mRN... 45 0.010
(Q5JU00) RecName: Full=T-complex-associated testis-expressed pro... 45 0.013
(Q4R642) RecName: Full=T-complex-associated testis-expressed pro... 45 0.013
BC098927_1(BC098927|pid:none) Rattus norvegicus similar to chrom... 45 0.013
BX908798_1341(BX908798|pid:none) Parachlamydia-related symbiont ... 45 0.013
AK049352_1(AK049352|pid:none) Mus musculus ES cells cDNA, RIKEN ... 44 0.017
BC098479_1(BC098479|pid:none) Mus musculus NLR family, pyrin dom... 44 0.017
CP000087_895(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 44 0.022
AM494963_52(AM494963|pid:none) Leishmania braziliensis chromosom... 44 0.029
AC116986_64(AC116986|pid:none) Dictyostelium discoideum chromoso... 44 0.029
AC005757_1(AC005757|pid:none) Homo sapiens chromosome 19, cosmid... 44 0.029
(O75864) RecName: Full=Leucine-rich repeat-containing protein 68; 44 0.029
CP000587_82(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 43 0.038
AB178084_1(AB178084|pid:none) Daucus carota LRR-S/T-RLK mRNA for... 43 0.038
AC091781_84(AC091781|pid:none) Trypanosoma brucei chromosome 4 c... 42 0.065
AC124218_15(AC124218|pid:none) Medicago truncatula clone mth2-30... 42 0.065
AC159410_1(AC159410|pid:none) Trypanosoma brucei chromosome 4 cl... 42 0.065
AC146937_18(AC146937|pid:none) Oryza sativa (japonica cultivar-g... 42 0.065
CU694407_5(CU694407|pid:none) Ralstonia solanacearum strain MolK... 42 0.065
CR628336_1010(CR628336|pid:none) Legionella pneumophila str. Par... 42 0.065
AY266455_1(AY266455|pid:none) Synthetic construct leucine-rich r... 42 0.085
BC161940_1(BC161940|pid:none) Rattus norvegicus similar to leuci... 42 0.085
BC087492_1(BC087492|pid:none) Xenopus laevis hypothetical LOC496... 42 0.085
AM494942_15(AM494942|pid:none) Leishmania braziliensis chromosom... 42 0.11
Z75539_5(Z75539|pid:none) Caenorhabditis elegans Cosmid F28C1, c... 42 0.11
BT053174_1(BT053174|pid:none) Medicago truncatula clone MTYFL_FM... 42 0.11
C89243(C89243) protein F28C1.3 [imported] - Caenorhabditis elega... 42 0.11
AM910995_453(AM910995|pid:none) Plasmodium knowlesi strain H chr... 42 0.11
CU695238_398(CU695238|pid:none) Ralstonia solanacearum strain Mo... 42 0.11
CP000684_3(CP000684|pid:none) Rickettsia massiliae MTU5 plasmid ... 41 0.15
CP001326_666(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 41 0.15
(Q14BP6) RecName: Full=Leucine-rich repeat-containing protein LO... 41 0.15
AE014134_2658(AE014134|pid:none) Drosophila melanogaster chromos... 41 0.15
BC153283_1(BC153283|pid:none) Bos taurus chromosome 1 open readi... 41 0.19
(Q8CIM1) RecName: Full=Leucine-rich repeat-containing protein 45... 41 0.19
CP000675_1037(CP000675|pid:none) Legionella pneumophila str. Cor... 41 0.19
AL646053_915(AL646053|pid:none) Ralstonia solanacearum GMI1000 m... 41 0.19
AM502246_206(AM502246|pid:none) Leishmania infantum chromosome 28. 40 0.25
AM910996_661(AM910996|pid:none) Plasmodium knowlesi strain H chr... 40 0.25
AK228987_1(AK228987|pid:none) Arabidopsis thaliana mRNA for hypo... 40 0.25
AK220210_1(AK220210|pid:none) Mus musculus mRNA for mFLJ00359 pr... 39 0.27
AB234024_1(AB234024|pid:none) Paralichthys olivaceus TLR9 gene f... 40 0.32
CP001102_101(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 40 0.32
(Q8N4P6) RecName: Full=Leucine-rich repeat-containing protein C1... 40 0.32
CT005265_51(CT005265|pid:none) Leishmania major strain Friedlin,... 40 0.32
(Q66X19) RecName: Full=NACHT, LRR and PYD domains-containing pro... 40 0.32
EU643473_3(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep... 40 0.32
BC118803_1(BC118803|pid:none) Xenopus tropicalis leucine-rich re... 40 0.32
AE014134_2544(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.32
AB234023_1(AB234023|pid:none) Paralichthys olivaceus TLR9 mRNA f... 40 0.32
AY596194_1(AY596194|pid:none) Mus musculus NALP-alpha (Nalp-alph... 40 0.42
(Q6GPJ8) RecName: Full=Centrosomal protein of 97 kDa; S... 40 0.42
AB178010_2(AB178010|pid:none) Ralstonia solanacearum lrpC, lrpD ... 40 0.42
AE017342_11(AE017342|pid:none) Cryptococcus neoformans var. neof... 40 0.42
BC120833_1(BC120833|pid:none) Mus musculus NLR family, pyrin dom... 40 0.42
AM494969_54(AM494969|pid:none) Leishmania braziliensis chromosom... 40 0.42
(Q96CN5) RecName: Full=Leucine-rich repeat-containing protein 45... 40 0.42
AM472222_1(AM472222|pid:none) Vitis vinifera contig VV78X170535.... 40 0.42
AJ002235_5(AJ002235|pid:none) Lycopersicon hirsutum Cf-4 resista... 40 0.42
FN357295_22(FN357295|pid:none) Schistosoma mansoni genome sequen... 39 0.55
AF528597_1(AF528597|pid:none) Arabidopsis thaliana ecotype An-2 ... 39 0.55
CP000087_915(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 39 0.55
AC004512_16(AC004512|pid:none) Arabidopsis thaliana chromosome 1... 39 0.55
AF528591_1(AF528591|pid:none) Arabidopsis thaliana ecotype Colum... 39 0.55
AY634611_1(AY634611|pid:none) Lycopersicon chmielewskii Hcr9-Avr... 39 0.55
FB902959_1(FB902959|pid:none) Sequence 122232 from Patent WO2008... 39 0.55
EU977109_1(EU977109|pid:none) Zea mays clone 999159 leucine-rich... 39 0.55
CT005269_48(CT005269|pid:none) Leishmania major strain Friedlin,... 39 0.55
CP000685_1182(CP000685|pid:none) Flavobacterium johnsoniae UW101... 39 0.55
AF285581_1(AF285581|pid:none) Mus musculus ribonuclease/angiogen... 39 0.55
AF177674_1(AF177674|pid:none) Arabidopsis thaliana cultivar Wass... 39 0.55
AF119041_2(AF119041|pid:none) Lycopersicon esculentum haplotype ... 39 0.72
AM502250_84(AM502250|pid:none) Leishmania infantum chromosome 32. 39 0.72
AY160238_1(AY160238|pid:none) Mus musculus musculus PWK/Ph NOD2 ... 39 0.72
CR855151_8(CR855151|pid:none) Oryza sativa genomic DNA, chromoso... 39 0.72
BC123070_1(BC123070|pid:none) Xenopus tropicalis cDNA clone IMAG... 39 0.72
(Q8K3Z0) RecName: Full=Nucleotide-binding oligomerization domain... 39 0.72
AM393202_1(AM393202|pid:none) Synthetic construct Homo sapiens c... 39 0.72
FJ004845_1(FJ004845|pid:none) Ictalurus punctatus NOD2 receptor ... 39 0.94
(Q6R2J8) RecName: Full=Protein STRUBBELIG-RECEPTOR FAMILY 8; Alt... 39 0.94
(Q9CZ62) RecName: Full=Centrosomal protein of 97 kDa; S... 39 0.94
AL080282_10(AL080282|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.94
CU928175_15(CU928175|pid:none) Zygosaccharomyces rouxii strain C... 39 0.94
AY596195_1(AY596195|pid:none) Mus musculus NALP-beta (Nalp-beta)... 39 0.94
AK040079_1(AK040079|pid:none) Mus musculus 0 day neonate thymus ... 39 0.94
BC065773_1(BC065773|pid:none) Mus musculus centrosomal protein 9... 39 0.94
AY160388_1(AY160388|pid:none) Mus musculus SM/J NOD2 (Nod2) gene... 38 1.2
EF613347_1(EF613347|pid:none) Danio rerio NOD-like receptor C mR... 38 1.2
AB120627_1(AB120627|pid:none) Populus nigra PnLRK1 mRNA for leuc... 38 1.2
AY160258_1(AY160258|pid:none) Mus musculus domesticus WSB/Ei NOD... 38 1.2
CR628337_2333(CR628337|pid:none) Legionella pneumophila str. Len... 38 1.2
AK089843_1(AK089843|pid:none) Mus musculus activated spleen cDNA... 38 1.2
AY160308_1(AY160308|pid:none) Mus musculus FL/1Re NOD2 (Nod2) ge... 38 1.2
AE017354_2353(AE017354|pid:none) Legionella pneumophila subsp. p... 38 1.2
BC044774_1(BC044774|pid:none) Mus musculus nucleotide-binding ol... 38 1.2
AY160328_1(AY160328|pid:none) Mus spretus NOD2 (Nod2) gene, exon... 38 1.2
AY160288_1(AY160288|pid:none) Mus musculus SOD1/Ei NOD2 (Nod2) g... 38 1.2
BX908798_1455(BX908798|pid:none) Parachlamydia-related symbiont ... 38 1.2
AY160338_1(AY160338|pid:none) Mus musculus SWR/J NOD2 (Nod2) gen... 38 1.2
AF172282_15(AF172282|pid:none) Oryza sativa adh1-adh2 region. &... 38 1.6
AY751796_1(AY751796|pid:none) Sparus aurata TLR9 isoform B (TLR9... 38 1.6
EF710653_18(EF710653|pid:none) Glyptapanteles indiensis clone BA... 38 1.6
AE017354_1919(AE017354|pid:none) Legionella pneumophila subsp. p... 38 1.6
(Q6ZQY2) RecName: Full=Leucine-rich repeat-containing protein LO... 38 1.6
BX649355_1(BX649355|pid:none) Zebrafish DNA sequence from clone ... 38 1.6
CT005244_15(CT005244|pid:none) Leishmania major strain Friedlin,... 38 1.6
AY751797_1(AY751797|pid:none) Sparus aurata TLR9 isoform A (TLR9... 38 1.6
FJ266024_16(FJ266024|pid:none) Oryza sativa Indica group clone O... 38 1.6
CP000926_1987(CP000926|pid:none) Pseudomonas putida GB-1, comple... 38 1.6
CR954204_218(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 38 1.6
FB902931_1(FB902931|pid:none) Sequence 122204 from Patent WO2008... 38 1.6
EF710646_9(EF710646|pid:none) Glyptapanteles flavicoxis clone BA... 38 1.6
FJ004848_1(FJ004848|pid:none) Ictalurus punctatus NLRX1 receptor... 38 1.6
EU073586_1(EU073586|pid:none) Anopheles arabiensis isolate AR36A... 38 1.6
CU914168_1295(CU914168|pid:none) Ralstonia solanacearum strain I... 38 1.6
T02764(T02764) myosin-I binding protein 125 - Acanthamoeba caste... 30 2.0
AM431594_1(AM431594|pid:none) Vitis vinifera contig VV78X160416.... 32 2.0
CT005262_17(CT005262|pid:none) Leishmania major strain Friedlin,... 37 2.1
AK095125_1(AK095125|pid:none) Homo sapiens cDNA FLJ37806 fis, cl... 37 2.1
AE014134_1176(AE014134|pid:none) Drosophila melanogaster chromos... 37 2.1
CR628336_1944(CR628336|pid:none) Legionella pneumophila str. Par... 37 2.1
AC125479_18(AC125479|pid:none) Medicago truncatula clone mth2-7f... 37 2.1
AK057852_1(AK057852|pid:none) Homo sapiens cDNA FLJ25123 fis, cl... 37 2.1
AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete... 37 2.1
(Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16... 37 2.1
AK125722_1(AK125722|pid:none) Homo sapiens cDNA FLJ43734 fis, cl... 37 2.1
(Q0VAK6) RecName: Full=Leiomodin-3; AltName: Full=Leiomodin, fet... 37 2.1
AM055943_196(AM055943|pid:none) Toxoplasma gondii RH, genomic DN... 37 2.1
(Q8IZ02) RecName: Full=Leucine-rich repeat-containing protein 34... 37 2.1
AK302466_1(AK302466|pid:none) Homo sapiens cDNA FLJ60966 complet... 37 2.1
CP001407_472(CP001407|pid:none) Bacillus cereus 03BB102, complet... 37 2.1
AK293661_1(AK293661|pid:none) Homo sapiens cDNA FLJ56393 complet... 37 2.1
AP008218_38(AP008218|pid:none) Oryza sativa (japonica cultivar-g... 37 2.1
AE014134_1175(AE014134|pid:none) Drosophila melanogaster chromos... 37 2.1
FJ266025_13(FJ266025|pid:none) Oryza nivara clone OR_BBa102H20, ... 37 2.7
AE016796_1559(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 37 2.7
AF052427_4(AF052427|pid:none) Trypanosoma cruzi cosmid 2i15 NPK-... 37 2.7
(Q24020) RecName: Full=Protein flightless-1; AltName: Full=Fligh... 37 2.7
BC127157_1(BC127157|pid:none) Mus musculus leiomodin 3 (fetal), ... 37 2.7
AJ002237_2(AJ002237|pid:none) Lycopersicon esculentum haplotype ... 37 2.7
AC007067_12(AC007067|pid:none) Genomic sequence for Arabidopsis ... 37 2.7
DQ423775_1(DQ423775|pid:none) Ictalurus punctatus Toll-like rece... 37 3.6
CP000849_412(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 37 3.6
CP000083_2251(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 37 3.6
AJ002235_3(AJ002235|pid:none) Lycopersicon hirsutum Cf-4 resista... 36 4.7
AP008207_2521(AP008207|pid:none) Oryza sativa (japonica cultivar... 36 4.7
AK084463_1(AK084463|pid:none) Mus musculus 13 days embryo heart ... 36 4.7
AY596199_1(AY596199|pid:none) Mus musculus NALP-iota (Nalp-iota)... 36 4.7
FJ266028_13(FJ266028|pid:none) Oryza rufipogon clone OR_CBa141L1... 36 4.7
AF082516_1(AF082516|pid:none) Homo sapiens I-1 receptor candidat... 36 4.7
CP000821_1104(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 36 4.7
BC056900_1(BC056900|pid:none) Homo sapiens nischarin, mRNA (cDNA... 36 4.7
(Q9Y2I1) RecName: Full=Nischarin; AltName: Full=Imidazoline rece... 36 4.7
BC155123_1(BC155123|pid:none) Danio rerio zgc:174178, mRNA (cDNA... 36 4.7
AC136974_8(AC136974|pid:none) Medicago truncatula clone mth2-22e... 36 4.7
BC038102_1(BC038102|pid:none) Homo sapiens nischarin, mRNA (cDNA... 36 4.7
(P10775) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 36 4.7
(Q6B966) RecName: Full=NACHT, LRR and PYD domains-containing pro... 36 4.7
AP003237_3(AP003237|pid:none) Oryza sativa Japonica Group genomi... 36 4.7
M58700_1(M58700|pid:none) Pig ribonuclease inhibitor (RI) mRNA, ... 36 4.7
AB429345_1(AB429345|pid:none) Bruguiera gymnorhiza mRNA for hypo... 36 4.7
CP000849_1055(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 36 4.7
AB384069_1(AB384069|pid:none) Synthetic construct DNA, clone: pF... 36 4.7
BX248395_6(BX248395|pid:none) Zebrafish DNA sequence from clone ... 36 4.7
AC147009_15(AC147009|pid:none) Medicago truncatula clone mth2-13... 36 4.7
AK147017_1(AK147017|pid:none) Mus musculus 16 days embryo kidney... 36 4.7
AP003434_13(AP003434|pid:none) Oryza sativa Japonica Group genom... 36 6.1
(Q91VI7) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 36 6.1
BC134854_1(BC134854|pid:none) Danio rerio si:ch211-81a5.5, mRNA ... 36 6.1
AK090431_1(AK090431|pid:none) Homo sapiens mRNA for FLJ00348 pro... 36 6.1
BC147936_1(BC147936|pid:none) Bos taurus NLR family, pyrin domai... 36 6.1
BA000038_501(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 36 6.1
(Q8VCH9) RecName: Full=Leucine-rich repeat-containing protein 3B... 36 6.1
AL161513_4(AL161513|pid:none) Arabidopsis thaliana DNA chromosom... 36 6.1
AF071546_1(AF071546|pid:none) Mus musculus ribonuclease/angiogen... 36 6.1
AM393203_1(AM393203|pid:none) Synthetic construct Homo sapiens c... 36 6.1
(A6H789) RecName: Full=Leucine-rich repeat-containing protein 3B... 36 6.1
FB916185_1(FB916185|pid:none) Sequence 135458 from Patent WO2008... 36 6.1
AY064972_1(AY064972|pid:none) Arabidopsis thaliana AT4g08850/T32... 36 6.1
AK046486_1(AK046486|pid:none) Mus musculus adult male corpora qu... 35 8.0
BT072930_1(BT072930|pid:none) Drosophila melanogaster MIP03712 f... 35 8.0
FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR... 35 8.0
AY154460_1(AY154460|pid:none) Homo sapiens NALP5 (NALP5) mRNA, c... 35 8.0
BX908397_1(BX908397|pid:none) Zebrafish DNA sequence from clone ... 35 8.0
(P59047) RecName: Full=NACHT, LRR and PYD domains-containing pro... 35 8.0
BC085829_1(BC085829|pid:none) Rattus norvegicus flightless I hom... 35 8.0
CR855521_1(CR855521|pid:none) Xenopus tropicalis finished cDNA, ... 35 8.0
FN313824_1(FN313824|pid:none) Schistosoma japonicum isolate Anhu... 35 8.0
AK121252_1(AK121252|pid:none) Oryza sativa Japonica Group cDNA c... 35 8.0
(Q9LJF3) RecName: Full=Serine/threonine-protein kinase BRI1-like... 31 9.1
CR954203_353(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 31 9.7
>FJ004846_1(FJ004846|pid:none) Ictalurus punctatus NLRC3 receptor
mRNA, partial cds.
Length = 800
Score = 53.9 bits (128), Expect(2) = 1e-09
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Frame = +3
Query: 183 SLQTVHLRLNTPQE--LVSISEALKQRHSIVHLNLSHNKSIKELESWIALGLALKAPNQT 356
+LQT+ LR N+ + + ++++AL + LNL N +E A+G AL+ N T
Sbjct: 542 TLQTLSLRSNSVSDRGMKALTQALCYNKGLTKLNLRENSI--GVEGARAIGRALQE-NHT 598
Query: 357 LSQLNLSHNSLGAEGLSLIISDIIKTNRSITWLNLSHNNLDQDDDHSIMDALLYNQTIQT 536
L +L+L+ N L EG+ I + +K NR++T L+L N + ++ +L N IQ
Sbjct: 599 LRELDLTANLLNDEGVKAIAA-AVKVNRALTSLHLQWNFMKAGAAKALAQSLQSNTFIQL 657
Query: 537 LDLSNN 554
LDL N
Sbjct: 658 LDLQEN 663
Score = 33.9 bits (76), Expect(2) = 1e-09
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 670 ISRALQINQSLRHIDLSFMSIAPQESTELIKTLIGSRFLTSINLQQTLLSTVGETF 837
++ AL +NQSL +DL SI + L L +R L S+NLQ+ L G F
Sbjct: 701 LAEALTVNQSLHTLDLRGNSIGMGGAKALSSALKTNRSLRSLNLQENSLGMDGAIF 756
Score = 54.7 bits (130), Expect(2) = 7e-09
Identities = 39/108 (36%), Positives = 62/108 (57%)
Frame = +3
Query: 231 SISEALKQRHSIVHLNLSHNKSIKELESWIALGLALKAPNQTLSQLNLSHNSLGAEGLSL 410
++++ALK IV +NL N+ E AL L++ N+ LS LN+ NS+G EG+
Sbjct: 448 TLADALKMNQVIVSVNLQSNQIGDEGAH--ALAEVLQS-NRKLSTLNVKKNSIGPEGVKK 504
Query: 411 IISDIIKTNRSITWLNLSHNNLDQDDDHSIMDALLYNQTIQTLDLSNN 554
I++ +K N+ + LN+S N+L ++ AL N T+QTL L +N
Sbjct: 505 -IAEALKKNQILQDLNVSGNHLGDIGALALAQALAVNHTLQTLSLRSN 551
Score = 30.8 bits (68), Expect(2) = 7e-09
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 613 QSITHLNFSRNS-NRHPISGISRALQINQSLRHIDLSFMSIAPQESTELIKTLIGSRFLT 789
+ +T LN NS I RALQ N +LR +DL+ + + + + +R LT
Sbjct: 569 KGLTKLNLRENSIGVEGARAIGRALQENHTLRELDLTANLLNDEGVKAIAAAVKVNRALT 628
Query: 790 SINLQ 804
S++LQ
Sbjct: 629 SLHLQ 633
Score = 53.1 bits (126), Expect = 4e-05
Identities = 41/125 (32%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Frame = +3
Query: 186 LQTVHLRLNT--PQELVSISEALKQRHSIVHLNLSHNKSIKELESWIALGLALKAPNQTL 359
L T++++ N+ P+ + I+EALK+ + LN+S N + ++ + +AL AL A N TL
Sbjct: 487 LSTLNVKKNSIGPEGVKKIAEALKKNQILQDLNVSGNH-LGDIGA-LALAQAL-AVNHTL 543
Query: 360 SQLNLSHNSLGAEGLSLIISDIIKTNRSITWLNLSHNNLDQDDDHSIMDALLYNQTIQTL 539
L+L NS+ G+ + + + N+ +T LNL N++ + +I AL N T++ L
Sbjct: 544 QTLSLRSNSVSDRGMKAL-TQALCYNKGLTKLNLRENSIGVEGARAIGRALQENHTLREL 602
Query: 540 DLSNN 554
DL+ N
Sbjct: 603 DLTAN 607
Score = 47.8 bits (112), Expect = 0.002
Identities = 41/110 (37%), Positives = 58/110 (52%)
Frame = +3
Query: 225 LVSISEALKQRHSIVHLNLSHNKSIKELESWIALGLALKAPNQTLSQLNLSHNSLGAEGL 404
+VS++ ALK S++ L L S E + +AL AL NQ+L L+L NS+G G
Sbjct: 670 VVSLAGALKVNSSLMVLYLQ-GVSAGEAGA-VALAEALTV-NQSLHTLDLRGNSIGMGGA 726
Query: 405 SLIISDIIKTNRSITWLNLSHNNLDQDDDHSIMDALLYNQTIQTLDLSNN 554
+ S +KTNRS+ LNL N+L D I AL N + ++L N
Sbjct: 727 KAL-SSALKTNRSLRSLNLQENSLGMDGAIFIATALRGNHQLTYINLQGN 775
Score = 45.1 bits (105), Expect = 0.010
Identities = 31/95 (32%), Positives = 52/95 (54%)
Frame = +3
Query: 228 VSISEALKQRHSIVHLNLSHNKSIKELESWIALGLALKAPNQTLSQLNLSHNSLGAEGLS 407
V+++EAL S+ L+L N + AL ALK N++L LNL NSLG +G +
Sbjct: 699 VALAEALTVNQSLHTLDLRGNSI--GMGGAKALSSALKT-NRSLRSLNLQENSLGMDG-A 754
Query: 408 LIISDIIKTNRSITWLNLSHNNLDQDDDHSIMDAL 512
+ I+ ++ N +T++NL N + + + DA+
Sbjct: 755 IFIATALRGNHQLTYINLQGNGIGESGAKVVSDAI 789
Score = 44.7 bits (104), Expect = 0.013
Identities = 30/112 (26%), Positives = 61/112 (54%)
Frame = +3
Query: 222 ELVSISEALKQRHSIVHLNLSHNKSIKELESWIALGLALKAPNQTLSQLNLSHNSLGAEG 401
+ S+ + L Q L + +NK K+ ++ LG L A + + L+++ +S+ ++G
Sbjct: 360 DFASLKQLLPQLLYCSKLRMENNK-FKD-DAMELLGSLLSAKDSHIQSLSMADSSISSKG 417
Query: 402 LSLIISDIIKTNRSITWLNLSHNNLDQDDDHSIMDALLYNQTIQTLDLSNNE 557
+ + S + NR++T L+L NN+ ++ DAL NQ I +++L +N+
Sbjct: 418 IKPL-SRALLVNRTLTTLDLHGNNIGTKGAKTLADALKMNQVIVSVNLQSNQ 468
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,599,189,103
Number of extensions: 45258085
Number of successful extensions: 111851
Number of sequences better than 10.0: 229
Number of HSP's gapped: 111233
Number of HSP's successfully gapped: 379
Length of query: 673
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 538
Effective length of database: 614,245,399
Effective search space: 330464024662
Effective search space used: 330464024662
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
5 |
| SF (FL, S) |
0 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |