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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11796-1
Contig ID Contig-U11796-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Contig-U11796-1Q.Seq.d
CTAAACTATAAATATAAAAATAATAAATATATTATATAAAAACATAAATA
ATGGAACCACTTAGAAAAAGAGTTAAAGTCTATCAATTAGATAATAGCGG
AAAGTGGGATGATAAAGGTACAGGTCATGTATCATGTATATATGTAGATG
CATTATGTGCAATGGGATTAATTGTTAGATCAGAGAGTGATAACAGTGTA
ATTTTACAAACTCGACTATCAGCAGAGGATATATATCAAAAACAACAAGA
TTCCTTAATCGTTTGGACAGAACCAGATTCACAATTAGATTTAGCCCTAT
CATTTCAAGATTCATTGGGTTGTCAGGATATTTGGGAGAACATATTACAA
TATCAAAATCAAAGAACTGGTAGTTGTGATAGTGTAGATTTAGATTTACC
ACCAGTTTCAATCAATAATCTTCAAACAATTAATGAATTATTAGAAGCTT
CATTACCAATGTTAGATAAAGATAAAATTATAAATTCAATTTTTAAAGAG
GATTTAGTAAGATCATTATTAGATTTATTTGATGAAATTGAAAAATCAGG
TGAAGGAGGAGTTCACTTGTTTCAAATATTCAATATTTTTAAAAACCTTA
TTTTATTCAATGATACATCAATNNNNNNNNN----------AAATAGTGA
AAGATATTTAATACTTGGATCAATTAGATTTTTTAGATCAATGGTAAATA
TGAAAGATGACCTATATAATCAACATATCATTCAAGAGAATCTATTTGAA
CCAATCATTGAAGTTTTCAAATCAAACATTTCTAGGTATAATCTATTAAA
TTCAGCAATCATAGAACTATTTCAATACATCTACAAAGAGAACATTAGGG
ATTTAATTGTTTATTTAGTCGAAAGGTATAGAGAATTGTTTGAATCGGTA
ACCTATACCGACGTTTTAAAACAATTGATTTTAAAGTATGAACAAATTAA
GGATTCTTCATTTGAAAGTCCAGAAACATCTTGTAATAATAACGATAGCA
GTAGCAATGATATTGATAGCAAACCTATCATTGGTAATAATAAAATTAAT
CATAATTATCAAAGAACTCAAAGAGAAATCGATGAGGAAGAAGAAGAAGC
TTATTTTAATAGAGATGATGATTCTGAAGATTCTGATGATGAAGATGAAT
TAATTCCGATTTCAATTAATAATAATAATAATAACAATAATAATAATAAA
CAAATTTGTACAAATAATGAAAATAATATGGAGAAAAATGATGATAATAT
AGAAAAGGATAATGAAAATACTAATAATGGAAATGGTAGTAGTCATATAA
AGATTGTAGATTATGAAGACGAAGATGATGAAGATGATGAAATTAATAAA
TCTGTAGAAAGTGATGATATTGTTGAAAAACATGAAATAATAGATAAAAA
TGAAAAAAAAGATGAAATAATGAAAGAAAATAATGATAGTGATAATGATG
ATAATGATAATAATGATAATGACAATGATAATGATAATAATAGCGATATA
GAAAATAAAAATCATCTTAATAATAATGGTAATAATGAAAATAATGAAAA
TAATGACGATGTTCAAGATAAAAGTAACAACAAAAACAATAGTGATAAAA
TAAACGAAGANAAAAAATAGAAAAACAAGANAAAGAAAGAGAATTTAGAA
AGGAAGAAATAG
Gap gap included
Contig length 1652
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 4
Link to clone list U11796
List of clone(s) 

est1=CHJ265F,1,622
est2=SHD278Z,623,1165
est3=CHJ265Z,822,1070
est4=SFI243Z,869,1644
Translated Amino Acid sequence 
kl*i*k**iyyikt*IMEPLRKRVKVYQLDNSGKWDDKGTGHVSCIYVDALCAMGLIVRS
ESDNSVILQTRLSAEDIYQKQQDSLIVWTEPDSQLDLALSFQDSLGCQDIWENILQYQNQ
RTGSCDSVDLDLPPVSINNLQTINELLEASLPMLDKDKIINSIFKEDLVRSLLDLFDEIE
KSGEGGVHLFQIFNIFKNLILFNDTSXXX---

---NSERYLILGSIRFFRSMVNMKDDLYNQHIIQENLFEPIIEVFKSNISRYNLLNSAII
ELFQYIYKENIRDLIVYLVERYRELFESVTYTDVLKQLILKYEQIKDSSFESPETSCNNN
DSSSNDIDSKPIIGNNKINHNYQRTQREIDEEEEEAYFNRDDDSEDSDDEDELIPISINN
NNNNNNNNKQICTNNENNMEKNDDNIEKDNENTNNGNGSSHIKIVDYEDEDDEDDEINKS
VESDDIVEKHEIIDKNEKKDEIMKENNDSDNDDNDNNDNDNDNDNNSDIENKNHLNNNGN
NENNENNDDVQDKSNNKNNSDKINEXKK*knkxkkenlerkk*
Translated Amino Acid sequence (All Frames) 
Frame A:
lnykyknnkyii*khk*wnhlekelksin*iiaesgmikvqvmyhvym*mhyvqwd*lld
qrvitv*fykldyqqriyiknnkip*sfgqnqihn*i*pyhfkihwvvrifgrtyyniki
kelvvviv*i*iyhqfqsiifkqlmny*klhyqc*ikikl*iqflkri**dhy*iylmkl
knqvkeeftcfkysiflktlfysmihqxxx---

---k**kifntwin*if*ingkyer*pi*styhsresi*tnh*sfqikhf*v*sikfsnh
rtisihlqreh*gfnclfsrkv*riv*ignlyrrfktidfkv*tn*gffi*ksrnil***
r*q*q*y**qtyhw***n*s*lsknskrnr*grrrslf**r**f*rf***r*insdfn**
****q****tnlyk**k*ygek***yrkg**ky**wkw**sykdcrl*rrr**r**n**i
crk**yc*kt*nnr*k*kkr*nnerk**************q******ryrk*kss***w*
**k**k**rcsr*k*qqkq***nkrrxkiekqxkerefrkeei

Frame B:
*tinikiinilykninngtt*kks*slsir**rkvg**ryrscimyicrcimcnginc*i
re**qcnftnstisrgyiskttrflnrldrtrftirfspiisrfiglsgylgehitisks
knw*l**crfrfttsfnq*ssnn**iirsfitnvr*r*nykfnf*rgfskiiirfi**n*
kir*rrsslvsniqyf*kpyfiq*yinxxx---

---NSERYLILGSIRFFRSMVNMKDDLYNQHIIQENLFEPIIEVFKSNISRYNLLNSAII
ELFQYIYKENIRDLIVYLVERYRELFESVTYTDVLKQLILKYEQIKDSSFESPETSCNNN
DSSSNDIDSKPIIGNNKINHNYQRTQREIDEEEEEAYFNRDDDSEDSDDEDELIPISINN
NNNNNNNNKQICTNNENNMEKNDDNIEKDNENTNNGNGSSHIKIVDYEDEDDEDDEINKS
VESDDIVEKHEIIDKNEKKDEIMKENNDSDNDDNDNNDNDNDNDNNSDIENKNHLNNNGN
NENNENNDDVQDKSNNKNNSDKINEXKK*knkxkkenlerkk*

Frame C:
kl*i*k**iyyikt*IMEPLRKRVKVYQLDNSGKWDDKGTGHVSCIYVDALCAMGLIVRS
ESDNSVILQTRLSAEDIYQKQQDSLIVWTEPDSQLDLALSFQDSLGCQDIWENILQYQNQ
RTGSCDSVDLDLPPVSINNLQTINELLEASLPMLDKDKIINSIFKEDLVRSLLDLFDEIE
KSGEGGVHLFQIFNIFKNLILFNDTSXXX---

---ivkdi*yldqldfldqw*i*kmtyiinisfkriylnqslkfsnqtflgiiy*iqqs*
nyfntstkrtlgi*lfi*skgienclnr*piptf*nn*f*smnklrilhlkvqkhlviit
iavamilianlslviikliiiikelkeksmrkkkkliliemmilkilmmkmn*frfqlii
iiitiiiinkfvqimkiiwrkmmii*krimkilimemvvvi*rl*imktkmmkmmklinl
*kvmillknmk**ikmkkkmk**kkimivimmimiimimtmimiiiai*kikiiliimvi
mkimkimtmfkikvttktivik*tkxknrktrxrkri*kgrn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11796-1 (Contig-U11796-1Q)
/CSM_Contig/Contig-U11796-1Q.Seq.d
         (1662 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Conti...  1130  0.0
Contig-U04016-1 (Contig-U04016-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12461-1 (Contig-U12461-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U11516-1 (Contig-U11516-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10387-1 (Contig-U10387-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Contig-U11796-1Q.Seq.d
          Length = 1662

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 53  ggaaccacttagaaaaagagttaaagtctatcaattagataatagcggaaagtgggatga 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  ggaaccacttagaaaaagagttaaagtctatcaattagataatagcggaaagtgggatga 112

                                                                       
Query: 113 taaaggtacaggtcatgtatcatgtatatatgtagatgcattatgtgcaatgggattaat 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 taaaggtacaggtcatgtatcatgtatatatgtagatgcattatgtgcaatgggattaat 172

                                                                       
Query: 173 tgttagatcagagagtgataacagtgtaattttacaaactcgactatcagcagaggatat 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgttagatcagagagtgataacagtgtaattttacaaactcgactatcagcagaggatat 232

                                                                       
Query: 233 atatcaaaaacaacaagattccttaatcgtttggacagaaccagattcacaattagattt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atatcaaaaacaacaagattccttaatcgtttggacagaaccagattcacaattagattt 292

                                                                       
Query: 293 agccctatcatttcaagattcattgggttgtcaggatatttgggagaacatattacaata 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agccctatcatttcaagattcattgggttgtcaggatatttgggagaacatattacaata 352

                                                                       
Query: 353 tcaaaatcaaagaactggtagttgtgatagtgtagatttagatttaccaccagtttcaat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcaaaatcaaagaactggtagttgtgatagtgtagatttagatttaccaccagtttcaat 412

                                                                       
Query: 413 caataatcttcaaacaattaatgaattattagaagcttcattaccaatgttagataaaga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caataatcttcaaacaattaatgaattattagaagcttcattaccaatgttagataaaga 472

                                                                       
Query: 473 taaaattataaattcaatttttaaagaggatttagtaagatcattattagatttatttga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taaaattataaattcaatttttaaagaggatttagtaagatcattattagatttatttga 532

                                                                       
Query: 533 tgaaattgaaaaatcaggtgaaggaggagttcacttgtttcaaatattcaatatttttaa 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgaaattgaaaaatcaggtgaaggaggagttcacttgtttcaaatattcaatatttttaa 592

                                         
Query: 593 aaaccttattttattcaatgatacatcaat 622
           ||||||||||||||||||||||||||||||
Sbjct: 593 aaaccttattttattcaatgatacatcaat 622


 Score = 1041 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Plus

                                                                        
Query: 642  aaatagtgaaagatatttaatacttggatcaattagattttttagatcaatggtaaatat 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642  aaatagtgaaagatatttaatacttggatcaattagattttttagatcaatggtaaatat 701

                                                                        
Query: 702  gaaagatgacctatataatcaacatatcattcaagagaatctatttgaaccaatcattga 761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  gaaagatgacctatataatcaacatatcattcaagagaatctatttgaaccaatcattga 761

                                                                        
Query: 762  agttttcaaatcaaacatttctaggtataatctattaaattcagcaatcatagaactatt 821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  agttttcaaatcaaacatttctaggtataatctattaaattcagcaatcatagaactatt 821

                                                                        
Query: 822  tcaatacatctacaaagagaacattagggatttaattgtttatttagtcgaaaggtatag 881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  tcaatacatctacaaagagaacattagggatttaattgtttatttagtcgaaaggtatag 881

                                                                        
Query: 882  agaattgtttgaatcggtaacctataccgacgttttaaaacaattgattttaaagtatga 941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  agaattgtttgaatcggtaacctataccgacgttttaaaacaattgattttaaagtatga 941

                                                                        
Query: 942  acaaattaaggattcttcatttgaaagtccagaaacatcttgtaataataacgatagcag 1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  acaaattaaggattcttcatttgaaagtccagaaacatcttgtaataataacgatagcag 1001

                                                                        
Query: 1002 tagcaatgatattgatagcaaacctatcattggtaataataaaattaatcataattatca 1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 tagcaatgatattgatagcaaacctatcattggtaataataaaattaatcataattatca 1061

                                                                        
Query: 1062 aagaactcaaagagaaatcgatgaggaagaagaagaagcttattttaatagagatgatga 1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 aagaactcaaagagaaatcgatgaggaagaagaagaagcttattttaatagagatgatga 1121

                                                         
Query: 1122 ttctgaagattctgatgatgaagatgaattaattccgatttcaat 1166
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 ttctgaagattctgatgatgaagatgaattaattccgatttcaat 1166


 Score =  188 bits (95), Expect = 1e-47
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1279 ggaaatggtagtagtcatataaagattgtagattatgaagacgaagatgatgaagatgat 1338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 ggaaatggtagtagtcatataaagattgtagattatgaagacgaagatgatgaagatgat 1338

                                               
Query: 1339 gaaattaataaatctgtagaaagtgatgatattgt 1373
            |||||||||||||||||||||||||||||||||||
Sbjct: 1339 gaaattaataaatctgtagaaagtgatgatattgt 1373


>Contig-U04016-1 (Contig-U04016-1Q) /CSM_Contig/Contig-U04016-1Q.Seq.d
          Length = 369

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                              
Query: 1308 agattatgaagacgaagatgatgaagatgatgaa 1341
            ||||||||| || |||||||||||||||||||||
Sbjct: 109  agattatgatgatgaagatgatgaagatgatgaa 142


 Score = 36.2 bits (18), Expect = 0.12
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                          
Query: 1119 tgattctgaagattctgatgatgaagatga 1148
            ||||| || ||||| |||||||||||||||
Sbjct: 100  tgattgtgcagattatgatgatgaagatga 129


>Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Contig-U07029-1Q.Seq.d
          Length = 834

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 1116 tgatgattctgaagattctgatgatgaagatgaattaat 1154
            ||||||||| || ||||| ||||||||||| ||||||||
Sbjct: 500  tgatgattcagatgattcagatgatgaagaagaattaat 538


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,567
Number of Sequences: 6905
Number of extensions: 25567
Number of successful extensions: 3872
Number of sequences better than 10.0: 532
length of query: 1662
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1646
effective length of database: 5,564,391
effective search space: 9158987586
effective search space used: 9158987586
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Contig-U11796-1Q.Seq.d
         (1662 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(EA356980) Sequence 29 from patent US 7288385.                   1130   0.0    1
(EA356961) Sequence 9 from patent US 7288385.                    1130   0.0    1
(BJ366855) Dictyostelium discoideum cDNA clone:ddc40a18, 5' ...  1130   0.0    1
(BJ405192) Dictyostelium discoideum cDNA clone:dds30k20, 3' ...  1035   0.0    1
(BJ402549) Dictyostelium discoideum cDNA clone:dds17e12, 3' ...   539   0.0    2
(BJ381137) Dictyostelium discoideum cDNA clone:ddc40a18, 3' ...   456   e-123  1
(EL910985) INIT2_43_C05.b1_A006 G5 trophont cDNA (INIT2) Ich...    52   3e-06  2
(EL911062) INIT2_43_C06.g1_A006 G5 trophont cDNA (INIT2) Ich...    52   9e-06  2
(EL910986) INIT2_43_C06.b1_A006 G5 trophont cDNA (INIT2) Ich...    52   1e-05  2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   1e-05  16
(DB647974) Saccharomyces cerevisiae mRNA, clone: S03052-52_B...    44   5e-05  3
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   7e-05  14
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    42   1e-04  16
(EI022558) bb01f06.r Dekkera bruxellensis Random Genomic Lib...    54   2e-04  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   2e-04  18
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   2e-04  14
(DJ335365) CELL CYCLE GENES AND RELATED METHODS OF USING.          48   5e-04  4
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      46   5e-04  15
(AZ551618) ENTDV54TR Entamoeba histolytica Sheared DNA Entam...    46   6e-04  3
(AZ669474) ENTIY88TR Entamoeba histolytica Sheared DNA Entam...    46   6e-04  3
(AZ548467) ENTEK30TR Entamoeba histolytica Sheared DNA Entam...    46   7e-04  3
(BH160272) ENTQV49TR Entamoeba histolytica Sheared DNA Entam...    46   7e-04  3
(AM963498) Sparus aurata EST, clone cDN07P0001B17, 5'-end se...    46   8e-04  2
(FK208641) XABT216269.b1 Gateway compatible cien cDNA librar...    40   0.001  4
(DR168690) RTPHOS1_27_E07.b1_A029 Roots minus phosphorous Pi...    48   0.001  3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   0.002  15
(BW791115) Branchiostoma floridae cDNA, gastrula clone:bfga0...    40   0.002  3
(AZ546009) ENTFW53TF Entamoeba histolytica Sheared DNA Entam...    42   0.002  3
(EJ333257) 1092963456788 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.002  3
(AZ550256) ENTEV58TR Entamoeba histolytica Sheared DNA Entam...    42   0.002  3
(AF020720) AF020720 Entamoeba dispar cDNAs Entamoeba dispar ...    42   0.003  3
(AY660592) Atrina rigida clone Asprich_B unknown mRNA.             48   0.003  2
(FK167058) XABT190612.b1 Gateway compatible cien cDNA librar...    38   0.004  4
(AC181899) Strongylocentrotus purpuratus clone R3-1015I01, W...    56   0.004  1
(AC179777) Strongylocentrotus purpuratus clone R3-1015N09, W...    56   0.004  1
(EL894472) CGF2002469_B05 WLO-02:  Walnut leaf Juglans hinds...    56   0.004  1
(BP051651) Lotus japonicus cDNA, clone:SPD096b08_f, 3' end.        40   0.006  2
(BW934017) Branchiostoma floridae cDNA, neurula clone:bfne11...    40   0.006  3
(AR551123) Sequence 6254 from patent US 6747137.                   38   0.006  3
(FF791573) XABT87135.fwd Gateway compatible cien cDNA librar...    38   0.008  4
(AZ531291) ENTBQ34TR Entamoeba histolytica Sheared DNA Entam...    44   0.008  3
(AZ551092) ENTFJ22TF Entamoeba histolytica Sheared DNA Entam...    44   0.009  3
(AU284781) Dictyostelium discoideum gamete cDNA clone:FC-BK1...    42   0.010  3
(ES543605) Kr_K06_03J09_attB1_seq K06 Euphausia superba cDNA...    42   0.012  3
(BQ861886) QGC19N16.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    38   0.014  3
(BQ912819) QHA3a12.yg.ab1 QH_ABCDI sunflower RHA801 Helianth...    40   0.015  2
(CL898629) abg49f04.y1 Soybean random, unfiltered genomic li...    38   0.015  2
(BB975591) Plasmodium berghei strain ANKA cDNA clone:OK00542...    34   0.015  4
(AZ399608) 1M0165H05R Mouse 10kb plasmid UUGC1M library Mus ...    52   0.016  2
(BQ866704) QGC8L11.yg.ab1 QG_ABCDI lettuce salinas Lactuca s...    38   0.016  3
(BJ853845) Marchantia polymorpha cDNA clone:lwa44c07, 5' end.      54   0.017  1
(BJ848679) Marchantia polymorpha cDNA clone:lwa30o22, 5' end.      54   0.017  1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    46   0.019  6
(BQ862053) QGC20A21.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    38   0.020  3
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.021  14
(BQ865755) QGC5M17.yg.ab1 QG_ABCDI lettuce salinas Lactuca s...    38   0.022  3
(DC223378) Plasmodium berghei strain ANKA cDNA clone:MZ00734...    34   0.023  4
(BQ302309) QV4-BT0536-271299-059-d07 BT0536 Homo sapiens cDN...    52   0.023  2
(BQ864776) QGC27K04.yg.ab1 QG_ABCDI lettuce salinas Lactuca ...    38   0.024  3
(BJ419698) Dictyostelium discoideum cDNA clone:ddv36l23, 5' ...    42   0.026  3
(H14901) yl26a04.r1 Soares breast 3NbHBst Homo sapiens cDNA ...    46   0.026  3
(BJ419314) Dictyostelium discoideum cDNA clone:ddv35p15, 5' ...    42   0.026  3
(FF578516) TTEDK15THB Tetrahymena thermophila conjugation cD...    36   0.027  4
(DC224221) Plasmodium berghei strain ANKA cDNA clone:MZ00865...    34   0.027  4
(CX578628) TTE00027279 Amplicon Express - Conjugative Form T...    36   0.028  4
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   0.028  10
(EK470199) 1095469447714 Global-Ocean-Sampling_GS-32-01-01-1...    42   0.028  3
(AR556066) Sequence 11197 from patent US 6747137.                  40   0.028  3
(FE245188) CAPG8690.fwd CAPG Naegleria gruberi amoeba stage ...    40   0.029  2
(EG958916) AU_Ich_007C_H09 Whole organism normalized cDNA li...    34   0.029  4
(FE246587) CAPG9497.fwd CAPG Naegleria gruberi amoeba stage ...    40   0.030  2
(CX993526) DOG_EST_P132F02 Canis familiaris testis cDNA Cani...    48   0.031  2
(AZ671886) ENTLR44TR Entamoeba histolytica Sheared DNA Entam...    42   0.033  3
(EK288210) 1095462320023 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.033  2
(FE291003) CANH990.rev CANH_Daphnia_pulex_Log50_Library_21 D...    40   0.036  2
(AZ679713) ENTIH56TR Entamoeba histolytica Sheared DNA Entam...    40   0.039  3
(FE291004) CANH990.fwd CANH_Daphnia_pulex_Log50_Library_21 D...    40   0.040  2
(FE310422) CANU2500.rev CANU_Daphnia_pulex_Log50_Library_7 D...    40   0.041  2
(BJ431690) Dictyostelium discoideum cDNA clone:ddv15j02, 3' ...    42   0.042  3
(ES543412) Kr_K06_02J17_attB1_seq K06 Euphausia superba cDNA...    34   0.042  3
(BJ440854) Dictyostelium discoideum cDNA clone:ddv44n22, 3' ...    42   0.042  3
(AY748457) Glycine max chromosome MLG L clone Gm_ISb001_76_J...    36   0.045  2
(FE310423) CANU2500.fwd CANU_Daphnia_pulex_Log50_Library_7 D...    40   0.046  2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   0.046  13
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    46   0.047  7
(EX834655) CBNB4674.fwd CBNB Phycomyces blakesleeanus NRRL15...    44   0.048  3
(FE061315) LV_ES_RA34M05f Litopenaeus vannamei eyestalk cDNA...    48   0.048  2
(EF058390) Synthetic construct Saccharomyces cerevisiae clon...    46   0.048  3
(CA551164) C0839H05-5N NIA Mouse Blastocyst cDNA Library (Lo...    46   0.054  2
(ED707607) GM_WBb0053D21.r GM_WBb Glycine max genomic clone ...    36   0.055  2
(ED707523) GM_WBb0053B23.r GM_WBb Glycine max genomic clone ...    36   0.055  2
(ED660767) GM_WBa0083E12.f GM_WBa Glycine max genomic clone ...    38   0.055  2
(ED654821) GM_WBa0073C17.f GM_WBa Glycine max genomic clone ...    38   0.055  2
(BM240489) K0603B03-3 NIA Mouse Hematopoietic Stem Cell (Lin...    46   0.055  2
(ED640453) GM_WBa0050O11.r GM_WBa Glycine max genomic clone ...    36   0.055  2
(BW936597) Branchiostoma floridae cDNA, neurula clone:bfne08...    40   0.056  2
(FK146276) XABT177688.b1 Gateway compatible cien cDNA librar...    36   0.056  2
(CL899504) abg54d05.x1 Soybean random, unfiltered genomic li...    38   0.056  2
(CL887686) abf86b06.y1 Soybean random, unfiltered genomic li...    36   0.056  2
(CL896852) abg40b03.x1 Soybean random, unfiltered genomic li...    36   0.056  2

>(EA356980) Sequence 29 from patent US 7288385.
          Length = 3143

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus


Query: 53  ggaaccacttagaaaaagagttaaagtctatcaattagataatagcggaaagtgggatga 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   ggaaccacttagaaaaagagttaaagtctatcaattagataatagcggaaagtgggatga 62


Query: 113 taaaggtacaggtcatgtatcatgtatatatgtagatgcattatgtgcaatgggattaat 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  taaaggtacaggtcatgtatcatgtatatatgtagatgcattatgtgcaatgggattaat 122


Query: 173 tgttagatcagagagtgataacagtgtaattttacaaactcgactatcagcagaggatat 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgttagatcagagagtgataacagtgtaattttacaaactcgactatcagcagaggatat 182


Query: 233 atatcaaaaacaacaagattccttaatcgtttggacagaaccagattcacaattagattt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atatcaaaaacaacaagattccttaatcgtttggacagaaccagattcacaattagattt 242


Query: 293 agccctatcatttcaagattcattgggttgtcaggatatttgggagaacatattacaata 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agccctatcatttcaagattcattgggttgtcaggatatttgggagaacatattacaata 302


Query: 353 tcaaaatcaaagaactggtagttgtgatagtgtagatttagatttaccaccagtttcaat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcaaaatcaaagaactggtagttgtgatagtgtagatttagatttaccaccagtttcaat 362


Query: 413 caataatcttcaaacaattaatgaattattagaagcttcattaccaatgttagataaaga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caataatcttcaaacaattaatgaattattagaagcttcattaccaatgttagataaaga 422


Query: 473 taaaattataaattcaatttttaaagaggatttagtaagatcattattagatttatttga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taaaattataaattcaatttttaaagaggatttagtaagatcattattagatttatttga 482


Query: 533 tgaaattgaaaaatcaggtgaaggaggagttcacttgtttcaaatattcaatatttttaa 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgaaattgaaaaatcaggtgaaggaggagttcacttgtttcaaatattcaatatttttaa 542


Query: 593 aaaccttattttattcaatgatacatcaat 622
           ||||||||||||||||||||||||||||||
Sbjct: 543 aaaccttattttattcaatgatacatcaat 572

 Score = 1035 bits (522), Expect = 0.0
 Identities = 522/522 (100%)
 Strand = Plus / Plus


Query: 642  aaatagtgaaagatatttaatacttggatcaattagattttttagatcaatggtaaatat 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 aaatagtgaaagatatttaatacttggatcaattagattttttagatcaatggtaaatat 1616


Query: 702  gaaagatgacctatataatcaacatatcattcaagagaatctatttgaaccaatcattga 761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 gaaagatgacctatataatcaacatatcattcaagagaatctatttgaaccaatcattga 1676


Query: 762  agttttcaaatcaaacatttctaggtataatctattaaattcagcaatcatagaactatt 821
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 agttttcaaatcaaacatttctaggtataatctattaaattcagcaatcatagaactatt 1736


Query: 822  tcaatacatctacaaagagaacattagggatttaattgtttatttagtcgaaaggtatag 881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 tcaatacatctacaaagagaacattagggatttaattgtttatttagtcgaaaggtatag 1796


Query: 882  agaattgtttgaatcggtaacctataccgacgttttaaaacaattgattttaaagtatga 941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 agaattgtttgaatcggtaacctataccgacgttttaaaacaattgattttaaagtatga 1856


Query: 942  acaaattaaggattcttcatttgaaagtccagaaacatcttgtaataataacgatagcag 1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 acaaattaaggattcttcatttgaaagtccagaaacatcttgtaataataacgatagcag 1916


Query: 1002 tagcaatgatattgatagcaaacctatcattggtaataataaaattaatcataattatca 1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 tagcaatgatattgatagcaaacctatcattggtaataataaaattaatcataattatca 1976


Query: 1062 aagaactcaaagagaaatcgatgaggaagaagaagaagcttattttaatagagatgatga 1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 aagaactcaaagagaaatcgatgaggaagaagaagaagcttattttaatagagatgatga 2036


Query: 1122 ttctgaagattctgatgatgaagatgaattaattccgatttc 1163
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 ttctgaagattctgatgatgaagatgaattaattccgatttc 2078

 Score =  174 bits (88), Expect = 7e-39
 Identities = 88/88 (100%)
 Strand = Plus / Plus


Query: 1286 gtagtagtcatataaagattgtagattatgaagacgaagatgatgaagatgatgaaatta 1345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2201 gtagtagtcatataaagattgtagattatgaagacgaagatgatgaagatgatgaaatta 2260


Query: 1346 ataaatctgtagaaagtgatgatattgt 1373
            ||||||||||||||||||||||||||||
Sbjct: 2261 ataaatctgtagaaagtgatgatattgt 2288

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,588,740,105
Number of extensions: 107425964
Number of successful extensions: 11954675
Number of sequences better than 10.0: 1833
Length of query: 1662
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1638
Effective length of database: 97,308,875,965
Effective search space: 159391938830670
Effective search space used: 159391938830670
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Contig-U11796-1Q.Seq.d
         (1662 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9NWP1) RecName: Full=Serine/threonine-protein phosphatase 4 re...   142   4e-32
BC126728_1(BC126728|pid:none) Bos taurus SMEK homolog 1, suppres...   142   4e-32
AB385521_1(AB385521|pid:none) Synthetic construct DNA, clone: pF...   142   4e-32
AB095930_1(AB095930|pid:none) Homo sapiens mRNA for KIAA2010 pro...   142   4e-32
AF309645_1(AF309645|pid:none) Bos taurus hypothetical protein 7 ...   142   4e-32
(Q9VFS5) RecName: Full=Serine/threonine-protein phosphatase 4 re...   140   1e-31
(Q6INN7) RecName: Full=Serine/threonine-protein phosphatase 4 re...   140   1e-31
BC060855_1(BC060855|pid:none) Homo sapiens SMEK homolog 2, suppr...   134   1e-29
(Q5MIZ7) RecName: Full=Serine/threonine-protein phosphatase 4 re...   134   1e-29
AB037808_1(AB037808|pid:none) Homo sapiens mRNA for KIAA1387 pro...   134   1e-29
AK129344_1(AK129344|pid:none) Mus musculus mRNA for mKIAA1387 pr...   132   4e-29
AK037253_1(AK037253|pid:none) Mus musculus 6 days neonate skin c...   132   4e-29
(Q6DFT3) RecName: Full=Serine/threonine-protein phosphatase 4 re...   132   4e-29
BX000351_3(BX000351|pid:none) Mouse DNA sequence from clone RP23...   132   4e-29
(Q8BYY0) RecName: Full=Serine/threonine-protein phosphatase 4 re...   132   4e-29
(Q7ZX60) RecName: Full=Serine/threonine-protein phosphatase 4 re...   132   5e-29
AK041513_1(AK041513|pid:none) Mus musculus 3 days neonate thymus...   131   8e-29
BT058971_1(BT058971|pid:none) Salmo salar clone ssal-rgf-517-082...   130   2e-28
AK296481_1(AK296481|pid:none) Homo sapiens cDNA FLJ61306 complet...   126   3e-27
AC126780_28(AC126780|pid:none) Medicago truncatula clone mth2-10...   121   7e-26
AY094413_1(AY094413|pid:none) Arabidopsis thaliana At3g06670/T8E...   119   3e-25
AC023912_19(AC023912|pid:none) Arabidopsis thaliana chromosome I...   119   3e-25
BC065348_1(BC065348|pid:none) Danio rerio zgc:77352, mRNA (cDNA ...   119   3e-25
AK119468_1(AK119468|pid:none) Oryza sativa Japonica Group cDNA c...   114   1e-23
(Q6ZMV5) RecName: Full=Putative SMEK homolog 3;                       109   3e-22
AK131475_1(AK131475|pid:none) Homo sapiens cDNA FLJ16643 fis, cl...   109   3e-22
AL670771_1(AL670771|pid:none) Mouse DNA sequence from clone RP23...   108   6e-22
AK057429_1(AK057429|pid:none) Homo sapiens cDNA FLJ32867 fis, cl...   100   2e-19
AF016448_8(AF016448|pid:none) Caenorhabditis elegans cosmid F41E...    99   4e-19
AL136556_1(AL136556|pid:none) Homo sapiens mRNA; cDNA DKFZp761I0...    99   5e-19
AK132660_1(AK132660|pid:none) Mus musculus adult male testis cDN...    99   5e-19
AK023148_1(AK023148|pid:none) Homo sapiens cDNA FLJ13086 fis, cl...    99   5e-19
AK133211_1(AK133211|pid:none) Mus musculus adult male testis cDN...    99   5e-19
AM920437_1559(AM920437|pid:none) Penicillium chrysogenum Wiscons...    97   2e-18
AB174114_1(AB174114|pid:none) Macaca fascicularis brain cDNA clo...    96   4e-18
AK148868_1(AK148868|pid:none) Mus musculus 2 days neonate sympat...    95   9e-18
AK024297_1(AK024297|pid:none) Homo sapiens cDNA FLJ14235 fis, cl...    95   9e-18
BX248247_1(BX248247|pid:none) human full-length cDNA clone CL0BB...    95   9e-18
T31878(T31878)hypothetical protein F41E6.3 - Caenorhabditis eleg...    93   3e-17
AF016448_11(AF016448|pid:none) Caenorhabditis elegans cosmid F41...    93   3e-17
T42746(T39907;T42746)hypothetical protein SPBC216.01c - fission ...    92   7e-17
(Q9Y7J8) RecName: Full=Uncharacterized protein C216.01c;  &CU329...    92   7e-17
AC149491_5(AC149491|pid:none) Medicago truncatula chromosome 2 c...    91   1e-16
AP007164_600(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    86   5e-15
AE017352_33(AE017352|pid:none) Cryptococcus neoformans var. neof...    84   2e-14
CP000497_167(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    81   1e-13
CP001160_703(CP001160|pid:none) Thalassiosira pseudonana CCMP133...    77   2e-12
(Q6CQ91) RecName: Full=Serine/threonine-protein phosphatase 4 re...    74   2e-11
(P40164) RecName: Full=Serine/threonine-protein phosphatase 4 re...    74   2e-11
(Q6FR44) RecName: Full=Serine/threonine-protein phosphatase 4 re...    73   3e-11
BC044817_1(BC044817|pid:none) Mus musculus SMEK homolog 1, suppr...    71   1e-10
BX294116_3(BX294116|pid:none) Mouse DNA sequence from clone RP23...    70   3e-10
BC045714_1(BC045714|pid:none) Homo sapiens SMEK homolog 2, suppr...    63   4e-08
AP008211_328(AP008211|pid:none) Oryza sativa (japonica cultivar-...    63   4e-08
(Q75E32) RecName: Full=Serine/threonine-protein phosphatase 4 re...    62   5e-08
AB023034_5(AB023034|pid:none) Arabidopsis thaliana genomic DNA, ...    60   3e-07
AL512943_13(AL512943|pid:none) S.pombe chromosome II cosmid c713.      51   1e-04
AB027977_1(AB027977|pid:none) Schizosaccharomyces pombe gene for...    50   2e-04
AC096672_3(AC096672|pid:none) Trypanosoma brucei chromosome 4 cl...    46   0.005
AC159404_39(AC159404|pid:none) Trypanosoma brucei chromosome 8 c...    45   0.010
DQ148050_1(DQ148050|pid:none) Macaca mulatta clone ds2_p15_t7_20...    44   0.013
AM494968_335(AM494968|pid:none) Leishmania braziliensis chromoso...    44   0.023
T31876(T31876)hypothetical protein F41E6.4 - Caenorhabditis eleg...    44   0.023
AE014187_550(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.087
CP000716_219(CP000716|pid:none) Thermosipho melanesiensis BI429,...    39   0.74
AC116977_59(AC116977|pid:none) Dictyostelium discoideum chromoso...    38   1.3
CP000377_2914(CP000377|pid:none) Silicibacter sp. TM1040, comple...    37   1.6
CP001357_1796(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    36   4.8
BA000021_474(BA000021|pid:none) Wigglesworthia glossinidia endos...    36   4.8
CP000048_760(CP000048|pid:none) Borrelia hermsii DAH, complete g...    35   6.3
AM920436_2233(AM920436|pid:none) Penicillium chrysogenum Wiscons...    35   6.3
AE014185_187(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   8.2

>(Q9NWP1) RecName: Full=Serine/threonine-protein phosphatase 4
           regulatory subunit 3A; AltName: Full=SMEK homolog 1;
           &BC072409_1(BC072409|pid:none)
          Length = 833

 Score =  142 bits (358), Expect = 4e-32
 Identities = 84/210 (40%), Positives = 125/210 (59%), Gaps = 20/210 (9%)
 Frame = +3

Query: 51  MEPLRKRVKVYQLDNSGKWDDKGTGHVSCIYVDALCAMGLIVRSESDNSVILQTRLSAED 230
           M   R+RVKVY L+   +WDD+GTGHVS  YV+ L  M L+VR+ESD S++L+++++
Sbjct: 1   MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60

Query: 231 IYQKQQDSLIVWTEPDSQLDLALSFQDSLGCQDIWENILQYQ-----------------N 359
            YQKQQD+LIVW+E ++  DLALSFQ+  GC +IWE I Q Q
Sbjct: 61  AYQKQQDTLIVWSEAEN-YDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEE 119

Query: 360 QRTGSCDSVDLDLPPVSINNLQTINELLEASLPM-LDKDKIINSIFKEDLVRSLLDLFDE 536
           +R     S  L+LP   ++ L+ I EL+ +SLP  L ++K+  ++  E  ++ LL+LF
Sbjct: 120 ERFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHV 179

Query: 537 IE--KSGEGGVHLFQIFNIFKNLILFNDTS 620
            E  ++ EG  HL++   I K + L N T+
Sbjct: 180 CEDLENIEGLHHLYE---IIKGIFLLNRTA 206

 Score = 94.7 bits (234), Expect = 9e-18
 Identities = 42/100 (42%), Positives = 71/100 (71%)
 Frame = +1

Query: 655 YLILGSIRFFRSMVNMKDDLYNQHIIQENLFEPIIEVFKSNISRYNLLNSAIIELFQYIY 834
           +L L ++RF R ++ +KD+ YN++I++  LFEP+++ F +N SRYNL+NSAIIE+F++I
Sbjct: 550 FLALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIR 609

Query: 835 KENIRDLIVYLVERYRELFESVTYTDVLKQLILKYEQIKD 954
            E+I+ L  +++E Y +  E V Y    K L L++EQ ++
Sbjct: 610 VEDIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRE 649

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,454,003,971
Number of extensions: 26095556
Number of successful extensions: 89746
Number of sequences better than 10.0: 72
Number of HSP's gapped: 89665
Number of HSP's successfully gapped: 109
Length of query: 554
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 420
Effective length of database: 617,481,958
Effective search space: 259342422360
Effective search space used: 259342422360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.63  gvh: 0.50  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U11796-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0