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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11786-1
Contig ID Contig-U11786-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Contig-U11786-1Q.Seq.d
AACATCAACAACAAAAATACCAAATAGAGTATCAATGATTGCAAAATCCT
CAACTGCATCATCATCTGATAGCTCTTTAAATAATACAGCAACAACAACA
AAACCAACTCAATTTGGAAGATCAGCATCAATGATAGTTCCTAAAAATCA
AATTGAGCAGCAACAACAACCACAACAACAACAACAATCGCAACAACAAT
CATCATCACCAGATGTTTCAACAGAAAAGAAAATCCCACCAAAAGTAACA
CCAAGATCATCTTTATCAATTAATAAAGTACCAACTACAACCTCAACAAC
TTCAACTTCAACTTCAACAACAACAACAACAACAGCACCCCAACCAAAAT
CACAATCAACATTATCAATTAATAAAGCAAATACATCACCACCATCATCA
TCATCAAAATTATCAGCATCAATTTCAGCAAATGGTGGTACAACACTTAC
AGAATCAAATAGTTTAGAGAGTATTAATGATACTTCTAGTGATGGATCAG
AGTTGAATAAATATTTAAATGATGATGATCATCAAACCAATGAAAATAAT
GATGAAGATGAAGAAGATGATGATGAAATTGAGGAAGAGGAAGAAGTGCA
TGATAACTTTTTAAAGGAATTA----------NNNNNNNNNNTAAAAAGT
TTATAGATTATCAATATACATCATTGAAATTAAAAGGTAAAACTGGAAGA
GGTGCAACAATGTCATTAAATAATATGGAAGATGCCATTCCATCATCACC
AACACCACAACCTCAAACACAACCACAAAGCAATAATGAAGTTAGTGAGA
ATGGTAATGGATTAGATGTTCAAAATGAACAACCACAATTAATACAACAA
CAATCATCACCATCATTATCAAATTCAGCATCATCAACTCCATCACCACA
AAATCAATCACCACAATTACAATCTCAAACTGATCCACAATTAAGACAAT
ATCCAAATTTATTGAGACAAACAACATTCCACAAAATGTCTTATCAAACT
AGAATGGAAGCAATTAAAGATGCAGAAGAACAAACTAATATATTAAAACA
AGAAGAACAAACCAAACAAGAATTATTGAAACAAGAAGAACAAACCAAAC
AAGATTTATTAACAAAACAAACCAATGAAGAGAATAAGAAAACTCATAAG
GATCAATTAAATGAAATTTATAAATCTGGTACTGGTAGTGGTATGGTAGG
AACTGTTGGAAGATCATTCTTTAAACCAGCCAATAATGGCGGTATTGCTG
GTGGTGAAAATGTTGAACCTTCAAACGAACAAAAATATGAAACCTTGAAA
GGAACTAAAGCAACCACTAGCGCACCTTCATTAAATAAAATATTTTCAAT
AGTATCATCAACTCAAANNAAAANNAAAAGAAA
Gap gap included
Contig length 1373
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2874567
End point 2875932
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U11786
List of clone(s) 

est1=VFK432F,1,622
est2=CHI587F,42,618
est3=CHI587Z,623,1364
Translated Amino Acid sequence 
TSTTKIPNRVSMIAKSSTASSSDSSLNNTATTTKPTQFGRSASMIVPKNQIEQQQQPQQQ
QQSQQQSSSPDVSTEKKIPPKVTPRSSLSINKVPTTTSTTSTSTSTTTTTTAPQPKSQST
LSINKANTSPPSSSSKLSASISANGGTTLTESNSLESINDTSSDGSELNKYLNDDDHQTN
ENNDEDEEDDDEIEEEEEVHDNFLKEL---

---XXXKKFIDYQYTSLKLKGKTGRGATMSLNNMEDAIPSSPTPQPQTQPQSNNEVSENG
NGLDVQNEQPQLIQQQSSPSLSNSASSTPSPQNQSPQLQSQTDPQLRQYPNLLRQTTFHK
MSYQTRMEAIKDAEEQTNILKQEEQTKQELLKQEEQTKQDLLTKQTNEENKKTHKDQLNE
IYKSGTGSGMVGTVGRSFFKPANNGGIAGGENVEPSNEQKYETLKGTKATTSAPSLNKIF
SIVSSTQXKXKR
Translated Amino Acid sequence (All Frames) 
Frame A:
ninnkntk*sindckilnciii**lfk*ysnnnktnsiwkisindss*ksn*aatttttt
ttiattiiitrcfnrkenptksntkiifin**stnynlnnfnfnfnnnnnnstptkitin
iin**skyittiiiikiisinfskwwyntyrik*frey**yf**wirve*ifk***ssnq
*k***r*rr***n*grgrsa**lfkgi---

---xxxxksl*iinihh*n*kvkleevqqch*iiwkmpfhhhqhhnlkhnhkaimklvrm
vmd*mfkmnnhn*ynnnhhhhyqiqhhqlhhhkinhhnynlklihn*dniqiy*dkqhst
kcliklewkqlkmqknkliy*nkknkpnkny*nkknkpnkiy*qnkpmkrirklirin*m
kfinlvlvvvw*elledhslnqpimavllvvkmlnlqtnknmkp*kelkqplahlh*iky
fq*yhqlkxkxke

Frame B:
TSTTKIPNRVSMIAKSSTASSSDSSLNNTATTTKPTQFGRSASMIVPKNQIEQQQQPQQQ
QQSQQQSSSPDVSTEKKIPPKVTPRSSLSINKVPTTTSTTSTSTSTTTTTTAPQPKSQST
LSINKANTSPPSSSSKLSASISANGGTTLTESNSLESINDTSSDGSELNKYLNDDDHQTN
ENNDEDEEDDDEIEEEEEVHDNFLKEL---

---xxx*kvyrlsiyiieikr*nwkrcnnvik*ygrchsiitntttsntttkq**s**ew
*wircsk*tttintttiitiiikfsiinsittksittitisn*stiktiskfietnnipq
nvlsn*ngsn*rcrrtn*yiktrrtnqtriietrrtnqtrfinktnq*re*ens*gsik*
nl*iwyw*wygrncwkiil*tsq*wrycww*kc*tfkrtki*nlern*snh*rtfik*ni
fnsiinsxxxxkk

Frame C:
hqqqkyqieyq*lqnpqlhhhlial*iiqqqqqnqlnledqhq**flkiklssnnnhnnn
nnrnnnhhhqmfqqkrkshqk*hqdhlyqlikyqlqpqqlqlqlqqqqqqqhpnqnhnqh
yqlikqihhhhhhhqnyqhqfqqmvvqhlqnqiv*rvlmillvmdqs*ini*mmmiikpm
kimmkmkkmmmklrkrkkcmitf*rn---

---XXXKKFIDYQYTSLKLKGKTGRGATMSLNNMEDAIPSSPTPQPQTQPQSNNEVSENG
NGLDVQNEQPQLIQQQSSPSLSNSASSTPSPQNQSPQLQSQTDPQLRQYPNLLRQTTFHK
MSYQTRMEAIKDAEEQTNILKQEEQTKQELLKQEEQTKQDLLTKQTNEENKKTHKDQLNE
IYKSGTGSGMVGTVGRSFFKPANNGGIAGGENVEPSNEQKYETLKGTKATTSAPSLNKIF
SIVSSTQXKXKR
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11786-1 (Contig-U11786-1Q)
/CSM_Contig/Contig-U11786-1Q.Seq.d
         (1383 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Conti...   821  0.0
Contig-U03447-1 (Contig-U03447-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U13072-1 (Contig-U13072-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10715-1 (Contig-U10715-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13673-1 (Contig-U13673-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12541-1 (Contig-U12541-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12160-1 (Contig-U12160-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12101-1 (Contig-U12101-1Q) /CSM_Contig/Conti...    40  0.006

>Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Contig-U11786-1Q.Seq.d
          Length = 1383

 Score =  821 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Plus

                                                                        
Query: 643  taaaaagtttatagattatcaatatacatcattgaaattaaaaggtaaaactggaagagg 702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  taaaaagtttatagattatcaatatacatcattgaaattaaaaggtaaaactggaagagg 702

                                                                        
Query: 703  tgcaacaatgtcattaaataatatggaagatgccattccatcatcaccaacaccacaacc 762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  tgcaacaatgtcattaaataatatggaagatgccattccatcatcaccaacaccacaacc 762

                                                                        
Query: 763  tcaaacacaaccacaaagcaataatgaagttagtgagaatggtaatggattagatgttca 822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  tcaaacacaaccacaaagcaataatgaagttagtgagaatggtaatggattagatgttca 822

                                                                        
Query: 823  aaatgaacaaccacaattaatacaacaacaatcatcaccatcattatcaaattcagcatc 882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  aaatgaacaaccacaattaatacaacaacaatcatcaccatcattatcaaattcagcatc 882

                                                                        
Query: 883  atcaactccatcaccacaaaatcaatcaccacaattacaatctcaaactgatccacaatt 942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  atcaactccatcaccacaaaatcaatcaccacaattacaatctcaaactgatccacaatt 942

                                                                        
Query: 943  aagacaatatccaaatttattgagacaaacaacattccacaaaatgtcttatcaaactag 1002
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  aagacaatatccaaatttattgagacaaacaacattccacaaaatgtcttatcaaactag 1002

                                                                  
Query: 1003 aatggaagcaattaaagatgcagaagaacaaactaatatattaaaacaagaaga 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 aatggaagcaattaaagatgcagaagaacaaactaatatattaaaacaagaaga 1056


 Score =  498 bits (251), Expect = e-141
 Identities = 263/263 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1121 accaatgaagagaataagaaaactcataaggatcaattaaatgaaatttataaatctggt 1180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 accaatgaagagaataagaaaactcataaggatcaattaaatgaaatttataaatctggt 1180

                                                                        
Query: 1181 actggtagtggtatggtaggaactgttggaagatcattctttaaaccagccaataatggc 1240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 actggtagtggtatggtaggaactgttggaagatcattctttaaaccagccaataatggc 1240

                                                                        
Query: 1241 ggtattgctggtggtgaaaatgttgaaccttcaaacgaacaaaaatatgaaaccttgaaa 1300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1241 ggtattgctggtggtgaaaatgttgaaccttcaaacgaacaaaaatatgaaaccttgaaa 1300

                                                                        
Query: 1301 ggaactaaagcaaccactagcgcaccttcattaaataaaatattttcaatagtatcatca 1360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 ggaactaaagcaaccactagcgcaccttcattaaataaaatattttcaatagtatcatca 1360

                                   
Query: 1361 actcaaannaaaannaaaagaaa 1383
            |||||||||||||||||||||||
Sbjct: 1361 actcaaannaaaannaaaagaaa 1383


 Score =  359 bits (181), Expect = 5e-99
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                       
Query: 335 gcaccccaaccaaaatcacaatcaacattatcaattaataaagcaaatacatcaccacca 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcaccccaaccaaaatcacaatcaacattatcaattaataaagcaaatacatcaccacca 394

                                                                       
Query: 395 tcatcatcatcaaaattatcagcatcaatttcagcaaatggtggtacaacacttacagaa 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcatcatcatcaaaattatcagcatcaatttcagcaaatggtggtacaacacttacagaa 454

                                                                       
Query: 455 tcaaatagtttagagagtattaatgatacttctagtgatggatcagagttgaataaatat 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcaaatagtttagagagtattaatgatacttctagtgatggatcagagttgaataaatat 514

            
Query: 515 t 515
           |
Sbjct: 515 t 515


 Score =  317 bits (160), Expect = 2e-86
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatcaacaacaaaaataccaaatagagtatcaatgattgcaaaatcctcaactgcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacatcaacaacaaaaataccaaatagagtatcaatgattgcaaaatcctcaactgcatc 60

                                                                       
Query: 61  atcatctgatagctctttaaataatacagcaacaacaacaaaaccaactcaatttggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcatctgatagctctttaaataatacagcaacaacaacaaaaccaactcaatttggaag 120

                                                   
Query: 121 atcagcatcaatgatagttcctaaaaatcaaattgagcag 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcagcatcaatgatagttcctaaaaatcaaattgagcag 160


 Score =  184 bits (93), Expect = 2e-46
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 200 tcatcatcaccagatgtttcaacagaaaagaaaatcccaccaaaagtaacaccaagatca 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcatcatcaccagatgtttcaacagaaaagaaaatcccaccaaaagtaacaccaagatca 259

                                            
Query: 260 tctttatcaattaataaagtaccaactacaacc 292
           |||||||||||||||||||||||||||||||||
Sbjct: 260 tctttatcaattaataaagtaccaactacaacc 292


 Score = 36.2 bits (18), Expect = 0.098
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 605 aactttttaaaggaatta 622
           ||||||||||||||||||
Sbjct: 605 aactttttaaaggaatta 622


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 263 ttatcaattaataaag 278
           ||||||||||||||||
Sbjct: 362 ttatcaattaataaag 377


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 362 ttatcaattaataaag 377
           ||||||||||||||||
Sbjct: 263 ttatcaattaataaag 278


 Score = 30.2 bits (15), Expect = 6.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 845 caacaacaatcatca 859
           |||||||||||||||
Sbjct: 191 caacaacaatcatca 205


>Contig-U03447-1 (Contig-U03447-1Q) /CSM_Contig/Contig-U03447-1Q.Seq.d
          Length = 257

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 384 catcaccaccatcatcatcatca 406
           |||||||||||||||||||||||
Sbjct: 17  catcaccaccatcatcatcatca 39


>Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Contig-U09459-1Q.Seq.d
          Length = 842

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 385 atcaccaccatcatcatcatca 406
           ||||||||||||||||||||||
Sbjct: 526 atcaccaccatcatcatcatca 547


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 387 caccaccatcatcatcatca 406
           ||||| ||||||||||||||
Sbjct: 531 caccatcatcatcatcatca 550


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,643
Number of Sequences: 6905
Number of extensions: 33643
Number of successful extensions: 5860
Number of sequences better than 10.0: 799
length of query: 1383
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1367
effective length of database: 5,564,391
effective search space: 7606522497
effective search space used: 7606522497
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA 
Query= Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Contig-U11786-1Q.Seq.d
         (1383 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ380970) Dictyostelium discoideum cDNA clone:ddc39m21, 3' ...   488   0.0    3
(BJ415112) Dictyostelium discoideum cDNA clone:ddv21p08, 5' ...   317   0.0    4
(BJ366693) Dictyostelium discoideum cDNA clone:ddc39m21, 5' ...   307   0.0    4
(EB392924) PMAO-aaa49c06.g1 Lamprey_EST_Embryo Petromyzon ma...    46   0.002  2
(AC179512) Strongylocentrotus purpuratus clone R3-6A11, WORK...    42   0.003  2
(CU463084) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.003  2
(CT027673) L.saxatilis DNA sequence from clone CH317-10N19.        56   0.004  1
(EY357212) CAWZ4781.rev CAWZ Helobdella robusta Primary Late...    42   0.005  2
(BZ999954) pPGSseq-17E11 pPGS Arachis hypogaea subsp. hypoga...    42   0.009  2
(BJ339169) Dictyostelium discoideum cDNA clone:dda64l07, 5' ...    46   0.009  3
(AL136307) Human DNA sequence from clone RP3-380B8 on chromo...    40   0.010  2
(EC052806) 2643703 AB01 Drosophila melanogaster cDNA clone 1...    46   0.011  2
(BG225450) kp68a11.y1 TBN95TM-SSFH Strongyloides stercoralis...    50   0.011  2
(AA821037) GM05459.5prime GM Drosophila melanogaster ovary B...    46   0.011  2
(EC055164) 3702935 AB03 Drosophila melanogaster cDNA clone 1...    46   0.011  2
(FL641773) TS06-B7 Reticulitermes flavipes symbiont library ...    42   0.012  2
(EY354227) CAWZ2948.rev CAWZ Helobdella robusta Primary Late...    38   0.014  3
(EC051266) 2647812 AB01 Drosophila melanogaster cDNA clone 1...    46   0.014  2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    46   0.014  15
(AC225224) Zea mays chromosome 6 clone CH201-434E5; ZMMBBc04...    54   0.015  1
(AC219036) Zea mays chromosome 9 clone ZMMBBb-141B3; ZMMBBb0...    54   0.015  1
(AC215875) Zea mays chromosome 9 clone CH201-194F24; ZMMBBc0...    54   0.015  1
(AC212094) Zea mays chromosome 3 clone CH201-507C21; ZMMBBc0...    54   0.015  1
(AC196143) Zea mays chromosome 3 clone ZMMBBb-132F9; ZMMBBb0...    54   0.015  1
(AC190904) Zea mays chromosome 4 clone ZMMBBb-638P16; ZMMBBb...    54   0.015  1
(AC187283) Zea mays chromosome 6 clone CH201-321C24; ZMMBBc0...    54   0.015  1
(AC181363) Strongylocentrotus purpuratus clone R3-112K1, WOR...    54   0.015  1
(AC180551) Strongylocentrotus purpuratus clone R3-3098B4, WO...    54   0.015  1
(CG181985) PUIMU70TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    54   0.015  1
(BZ992319) PUGIL89TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    54   0.015  1
(EY348402) CAWZ16472.fwd CAWZ Helobdella robusta Primary Lat...    36   0.016  3
(AY232271) Dictyostelium discoideum putative protein Roco9 (...    42   0.017  5
(BB933579) Trifolium pratense cDNA clone:RCC06079.                 38   0.024  3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.025  11
(AC128003) Rattus norvegicus clone CH230-247E24, *** SEQUENC...    42   0.026  5
(CE643839) tigr-gss-dog-17000366888368 Dog Library Canis lup...    46   0.035  2
(AC168612) Strongylocentrotus purpuratus clone R3-3046H17, W...    36   0.036  2
(AC179310) Strongylocentrotus purpuratus clone R3-55D5, WORK...    36   0.037  2
(AC179396) Strongylocentrotus purpuratus clone R3-60J23, WOR...    40   0.037  2
(AC177707) Strongylocentrotus purpuratus clone R3-1011H1, WO...    36   0.037  2
(AC179391) Strongylocentrotus purpuratus clone R3-60J1, WORK...    40   0.037  2
(AY160106) Dictyostelium discoideum nucleotide exchange fact...    34   0.044  6
(EY336264) CAWY7578.fwd CAWY Helobdella robusta Subtracted E...    36   0.046  2
(EY337231) CAWY8191.rev CAWY Helobdella robusta Subtracted E...    36   0.046  2
(EH778437) CNSS17264.b1_P20.ab1 CNS(LMS) yellow starthistle ...    38   0.048  3
(AC094995) Rattus norvegicus clone CH230-6F8, *** SEQUENCING...    42   0.055  4
(AC162035) Mus musculus chromosome 18, clone RP23-434N7, com...    52   0.057  1
(AC202732) Rhesus Macaque  BAC CH250-425B11 () complete sequ...    52   0.057  1
(AC079807) Homo sapiens BAC clone RP11-760G15 from 2, comple...    52   0.057  1
(CU856659) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.057  1
(AC184211) Strongylocentrotus purpuratus clone R3-28G1, WORK...    52   0.057  1
(AC177248) Strongylocentrotus purpuratus clone R3-1034D07, W...    52   0.057  1
(BY566589) Mus musculus activated spleen cDNA, RIKEN full-le...    52   0.057  1
(EY502489) CBBP6397.rev CBBP Hirudo medicinalis hermaphrodit...    52   0.057  1
(EY501142) CBBP5660.rev CBBP Hirudo medicinalis hermaphrodit...    52   0.057  1
(EY498689) CBBP4264.fwd CBBP Hirudo medicinalis hermaphrodit...    52   0.057  1
(EY496087) CBBP2702.rev CBBP Hirudo medicinalis hermaphrodit...    52   0.057  1
(EY495298) CBBP2215.fwd CBBP Hirudo medicinalis hermaphrodit...    52   0.057  1
(EY486742) CBBP15371.rev CBBP Hirudo medicinalis hermaphrodi...    52   0.057  1
(EY303520) CAWX16757.rev CAWX Helobdella robusta Primary Ear...    46   0.062  2
(EY303521) CAWX16757.fwd CAWX Helobdella robusta Primary Ear...    46   0.064  2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    40   0.065  9
(EY336282) CAWY7590.fwd CAWY Helobdella robusta Subtracted E...    46   0.067  2
(AY069604) Drosophila melanogaster LD36415 full length cDNA.       46   0.074  2
(BZ251942) CH230-401L8.TV CHORI-230 Segment 2 Rattus norvegi...    42   0.075  2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    38   0.075  7
(AC160147) Mus musculus 10 BAC RP24-576A6 (Roswell Park Canc...    46   0.079  3
(CQ603258) Sequence 31016 from Patent WO0171042.                   46   0.090  2
(AY089517) Drosophila melanogaster GM05459 full insert cDNA.       46   0.095  2
(AC172405) Strongylocentrotus purpuratus clone R3-14L7, WORK...    46   0.10   3
(DH676955) Rattus norvegicus DNA, BAC clone: RNB1-228M22, 3'...    46   0.12   2
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    36   0.13   7
(AC179164) Strongylocentrotus purpuratus clone R3-4016E3, WO...    34   0.13   2
(AC178594) Strongylocentrotus purpuratus clone R3-3021N20, W...    46   0.13   2
(AC177582) Strongylocentrotus purpuratus clone R3-1025N4, WO...    40   0.13   2
(CQ603257) Sequence 31015 from Patent WO0171042.                   46   0.13   2
(BT031164) Drosophila melanogaster RE62653 full insert cDNA.       46   0.14   2
(AC180351) Strongylocentrotus purpuratus clone R3-3118A14, W...    36   0.14   2
(AC179965) Strongylocentrotus purpuratus clone R3-3035J13, W...    36   0.14   2
(FE179812) LV_NC_RA22M01f Litopenaeus vannamei nerve cord cD...    42   0.15   2
(FE164381) LV_LO_RA036M01f Litopenaeus vannamei lymphoid org...    42   0.15   2
(CG756245) P051-3-C08.za Ppa EcoRI BAC Library Pristionchus ...    40   0.16   2
(AC142049) Rattus norvegicus clone CH230-187C11, *** SEQUENC...    40   0.16   6
(AA000528) me75e10.r1 Soares mouse embryo NbME13.5 14.5 Mus ...    46   0.17   2
(AC120669) Rattus norvegicus clone CH230-22G10, WORKING DRAF...    46   0.17   4
(AL916675) Danio rerio EST sequence, clone 020-D09-2.              46   0.17   2
(AC170597) Mus musculus BAC clone RP23-391A19 from chromosom...    48   0.17   4
(AC184435) Strongylocentrotus purpuratus clone R3-3094B2, WO...    42   0.18   8
(AC126141) Rattus norvegicus clone CH230-78O2, *** SEQUENCIN...    40   0.19   3
(CQ220536) Sequence 7375 from Patent WO0157273.                    44   0.19   2
(CQ098310) Sequence 7169 from Patent WO0157272.                    44   0.19   2
(BX511319) RZPD Mus musculus cDNA clone IMAGp998K19935 = IMA...    46   0.19   2
(CS468864) Sequence 55 from Patent EP1748080.                      46   0.20   10
(CS419341) Sequence 55 from Patent WO2006094836.                   46   0.20   10
(EY387462) CAXA6773.rev CAXA Helobdella robusta Subtracted L...    40   0.20   3
(BC042229) Xenopus laevis similar to zinc finger protein of ...    48   0.20   2
(DH580540) Rattus norvegicus DNA, BAC clone: RNB1-099E20, 3'...    46   0.22   2
(EF375876) Helobdella sp. MS-2000 isolate Austin paired box ...    40   0.22   3
(AF346666) Oncorhynchus mykiss microsatellite OMM1002 sequence.    50   0.23   1
(CU467002) Human DNA sequence from clone XXbac-535A19 on chr...    50   0.23   1

>(BJ380970) Dictyostelium discoideum cDNA clone:ddc39m21, 3' end,
            single read.
          Length = 742

 Score =  488 bits (246), Expect(3) = 0.0
 Identities = 258/258 (100%)
 Strand = Plus / Minus


Query: 1126 tgaagagaataagaaaactcataaggatcaattaaatgaaatttataaatctggtactgg 1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259  tgaagagaataagaaaactcataaggatcaattaaatgaaatttataaatctggtactgg 200


Query: 1186 tagtggtatggtaggaactgttggaagatcattctttaaaccagccaataatggcggtat 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199  tagtggtatggtaggaactgttggaagatcattctttaaaccagccaataatggcggtat 140


Query: 1246 tgctggtggtgaaaatgttgaaccttcaaacgaacaaaaatatgaaaccttgaaaggaac 1305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139  tgctggtggtgaaaatgttgaaccttcaaacgaacaaaaatatgaaaccttgaaaggaac 80


Query: 1306 taaagcaaccactagcgcaccttcattaaataaaatattttcaatagtatcatcaactca 1365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79   taaagcaaccactagcgcaccttcattaaataaaatattttcaatagtatcatcaactca 20


Query: 1366 aannaaaannaaaagaaa 1383
            ||||||||||||||||||
Sbjct: 19   aannaaaannaaaagaaa 2

 Score =  398 bits (201), Expect(3) = 0.0
 Identities = 201/201 (100%)
 Strand = Plus / Minus


Query: 643 taaaaagtttatagattatcaatatacatcattgaaattaaaaggtaaaactggaagagg 702
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaaaagtttatagattatcaatatacatcattgaaattaaaaggtaaaactggaagagg 683


Query: 703 tgcaacaatgtcattaaataatatggaagatgccattccatcatcaccaacaccacaacc 762
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgcaacaatgtcattaaataatatggaagatgccattccatcatcaccaacaccacaacc 623


Query: 763 tcaaacacaaccacaaagcaataatgaagttagtgagaatggtaatggattagatgttca 822
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcaaacacaaccacaaagcaataatgaagttagtgagaatggtaatggattagatgttca 563


Query: 823 aaatgaacaaccacaattaat 843
           |||||||||||||||||||||
Sbjct: 562 aaatgaacaaccacaattaat 542

 Score =  252 bits (127), Expect(3) = 0.0
 Identities = 127/127 (100%)
 Strand = Plus / Minus


Query: 918  tacaatctcaaactgatccacaattaagacaatatccaaatttattgagacaaacaacat 977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  tacaatctcaaactgatccacaattaagacaatatccaaatttattgagacaaacaacat 408


Query: 978  tccacaaaatgtcttatcaaactagaatggaagcaattaaagatgcagaagaacaaacta 1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  tccacaaaatgtcttatcaaactagaatggaagcaattaaagatgcagaagaacaaacta 348


Query: 1038 atatatt 1044
            |||||||
Sbjct: 347  atatatt 341

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,340,501,828
Number of extensions: 94403894
Number of successful extensions: 9881834
Number of sequences better than 10.0: 1977
Length of query: 1383
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1359
Effective length of database: 97,308,875,965
Effective search space: 132242762436435
Effective search space used: 132242762436435
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Contig-U11786-1Q.Seq.d
         (1383 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008215_740(AP008215|pid:none) Oryza sativa (japonica cultivar-...    37   1.3
AP005419_8(AP005419|pid:none) Oryza sativa Japonica Group genomi...    37   1.3
FJ501956_1(FJ501956|pid:none) Oryza sativa Indica Group keratin ...    37   1.3

>AP008215_740(AP008215|pid:none) Oryza sativa (japonica
            cultivar-group) genomic DNA, chromosome 9.
          Length = 444

 Score = 37.4 bits (85), Expect = 1.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 1107 KSCLVCSSCFNNSCLVCSSCFNILVC 1030
            + C  C+ CF+ SC  CSSCFNI  C
Sbjct: 326  EQCCRCADCFSCSCPRCSSCFNIFKC 351

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,130,494,257
Number of extensions: 16468253
Number of successful extensions: 26694
Number of sequences better than 10.0: 3
Number of HSP's gapped: 26665
Number of HSP's successfully gapped: 3
Length of query: 461
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 329
Effective length of database: 623,955,076
Effective search space: 205281220004
Effective search space used: 205281220004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.48  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U11786-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0