Contig-U11780-1
Contig ID Contig-U11780-1
Contig update 2002.12.18
Contig sequence
>Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Contig-U11780-1Q.Seq.d
ATTGGTAATGCAGTATCAAATACAATCACTCAAATTGCCCGTGTCGATTT
AGATGATTCAGATGAAGATTCAGAAGAGGAGATTATGGTTGAAGAGGATA
TTGAAGTTTCAAAGAAAGAATATGAAAGATATCATAGAAAGAAATTAGGT
TTACCATTATCAGATACTGAAGATTCAGATAACGATAATGACAATGGTGG
TGATGATAATGATAATGCAATTATGAATGCCATTGATAATGGTGTTTTCA
AAACAGCCGACATGATTGCAGATTCATTATATTTTGCAGGTAGTTTCTTA
TCAAGGTGGTTTTAAAACCGTTCAAGATAATGCAAACATTGAGAATGTTA
AAGGCCTAACTCAAGAGGTTTCAAATATTTCACTAGATACTAAAAATAAA
ATTTCAAATTCTGAACTCTACGAAAAGAGTCAAAAAATAGCATCACAAAT
GATGGATTCTTCAGTTGATGCTCTTGAATCTGTTGGTCAAAGAGCATATT
CAATGTTTTCAACTCACAATGAAAAATAAATCAAATAATGATGAAAATAA
TAATAATAATAATAATAAACAACAACAACAACCACAACAACAACAACAAC
AACCGAGGAAGAAACAAAAAATGAAAACACTATTGTTGAAAATAAAGATG
AAGATAAAAAAGTAGAGGAAAGTGTTCAAGAAAAAGAAGAAGAAAAAGAA
AAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAA
AGAAAAAGAAAATAATATAGAAAAAGAAGAAGAAAAGAAAGAAGAAGAAA
AAGAAGAAAAAAATGTAGAAAAAGAAGAAGAAAAAGAAGAAAAACAAACA
AAAACAGATGATAATATGTGGAATAATGAAGATGAAATTGATGTACCAAC
AGTTGAAGGTGAAATAGAAACAGATATTAAAGATGAAAAAAAAGAAGAAA
AGAAAAAAGTTGAAAAAGAAATTGAAGATCCAAATAAAAAATATTTTATA
----------NNNNNNNNNNCCACAACTACCAATACCAATAATAATAATA
ATAATACTTCAACAAATTATGAATTTAATATTAATGAATCAATTTTTGAA
GCTGGTGAATTTGATTCAAGTAAATGCGCAGAACATTTCAATATCACTAA
ATTTATACAAGATATTGAAAAATTATCAGTTGAATCTACAATGAAAGCTC
ATCAAATTAATCGTAAAGTTATTTCAACATCATCAATTAAATCATCAGTT
GATCTTGTTTTAAATGAAATTAAAGAATTATTTGAAAATGAAGAATTACC
TGAAAATTTATCAAATTCAAATACTTTATCATTTAGTAATATTCATATTT
TTGAAATTGAAAAGAAATATAGAGAATTTTTTGATAAATTACAAGAGTTT
ACACCACAATTAAAGAATCAATCAATTGAATTAGGTTTATGTCGTGGATT
AGAAAAGATTTATCAATTGACTGCAATTGGATTAGAGTTAATTTCAACAA
TTGCATCAAGTATTCCAGATGAGAAAGCACCATCAGATGTAACCAATAAT
AATAATAATAATAATAATACAGGTGAATGGGCAATTTCAAAATCAAATGA
AATTTTATTTACAATCACTAAAATCACTCAAGATATTAAATTGATTTCAG
CAATGTTAACAGAGATCATTAAATCAAAACAAACTCCAAACTCTAGAAAA
TTATTAAATAATCTTCATGTTGAAACTACAAATGCAATTTCATACATTCA
AGATACAAAAGGTGGTTTCGTTAACATTTGTCAAATCATGTATTTAAAGA
AATTAAATTTTCATTAAAAGGTCCAACTTCACCAATTTCAACACCAAATA
GAAAGCAACAAAAATC

Gap gap included
Contig length 1856
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2773085
End point 2771332
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 8
Link to clone list U11780
List of clone(s)

est1=CHD332Z,1,625
est2=CHB191Z,43,744
est3=CHB191F,388,919
est4=CHI376F,411,992
est5=SLD709F,422,733
est6=CHD332F,432,1000
est7=SLD709Z,560,771
est8=CHI376Z,1001,1847
Translated Amino Acid sequence
lvmqyqiqslklpvsi*miqmkiqkrrlwlkrilkfqrknmkdiiern*vyhyqilkiqi
timtmvvmimimql*mplimvfskqpt*lqihyilqvvsyqggfktvqdnanienvkglt
qevsnisldtknkisnselyeksqkiasqmmdssvdalesvgqraysmfsthnek*ik**
*k*******TTTTTTTTTTTTEEETKNENTIVENKDEDKKVEESVQEKEEEKEKEKEKEK
EKEKEKEKEKEKENNIEKEEEKKEEEKEEKNVEKEEEKEEKQTKTDDNMWNNEDEIDVPT
VEGEIETDIKDEKKEEKKKVEKEIEDPNKKYFI---

---XXXXTTTNTNNNNNNTSTNYEFNINESIFEAGEFDSSKCAEHFNITKFIQDIEKLSV
ESTMKAHQINRKVISTSSIKSSVDLVLNEIKELFENEELPENLSNSNTLSFSNIHIFEIE
KKYREFFDKLQEFTPQLKNQSIELGLCRGLEKIYQLTAIGLELISTIASSIPDEKAPSDV
TNNNNNNNNTGEWAISKSNEILFTITKITQDIKLISAMLTEIIKSKQTPNSRKLLNNLHV
ETTNAISYIQDTKGGFVNICQIMYLKKLNFH*kvqlhqfqhqiesnkn


Translated Amino Acid sequence (All Frames)
Frame A:
ignavsntitqiarvdlddsdedseeeimveedievskkeyeryhrkklglplsdtedsd
ndndnggddndnaimnaidngvfktadmiadslyfagsflsrwf*nrsr*ckh*ec*rpn
srgfkyftry*k*nfkf*tlrkesknsitndgffs*cs*icwsksifnvfnsq*kinqim
mkiiiiiiinnnnnhnnnnnnrgrnkk*khyc*k*r*r*ksrgkcsrkrrrkrkrkrkrk
rkrkrkrkrkrkrk*yrkrrrkerrrkrrkkcrkrrrkrrktnknr**yve**r*n*ctn
s*r*nrnry*r*kkrrkeks*krn*rsk*kify---

---XXXXTTTNTNNNNNNTSTNYEFNINESIFEAGEFDSSKCAEHFNITKFIQDIEKLSV
ESTMKAHQINRKVISTSSIKSSVDLVLNEIKELFENEELPENLSNSNTLSFSNIHIFEIE
KKYREFFDKLQEFTPQLKNQSIELGLCRGLEKIYQLTAIGLELISTIASSIPDEKAPSDV
TNNNNNNNNTGEWAISKSNEILFTITKITQDIKLISAMLTEIIKSKQTPNSRKLLNNLHV
ETTNAISYIQDTKGGFVNICQIMYLKKLNFH*kvqlhqfqhqiesnkn

Frame B:
lvmqyqiqslklpvsi*miqmkiqkrrlwlkrilkfqrknmkdiiern*vyhyqilkiqi
timtmvvmimimql*mplimvfskqpt*lqihyilqvvsyqggfktvqdnanienvkglt
qevsnisldtknkisnselyeksqkiasqmmdssvdalesvgqraysmfsthnek*ik**
*k*******TTTTTTTTTTTTEEETKNENTIVENKDEDKKVEESVQEKEEEKEKEKEKEK
EKEKEKEKEKEKENNIEKEEEKKEEEKEEKNVEKEEEKEEKQTKTDDNMWNNEDEIDVPT
VEGEIETDIKDEKKEEKKKVEKEIEDPNKKYFI---

---xxxpqlpipiiiiiilqqimnlilmnqflklvnliqvnaqnisislnlykilknyql
nlq*kliklivklfqhhqlnhqlilf*mklknylkmknylkiyqiqilyhlvififlklk
rnienflinykslhhn*rinqln*vyvvd*krfin*lqld*s*fqqlhqvfqmrkhhqm*
piiiiiiiiqvngqfqnqmkfylqslkslkiln*fqqc*qrslnqnklqtleny*iifml
klqmqfhtfkiqkvvsltfvksci*rn*ifikrsnftnfntk*katki

Frame C:
w*csikynhsncpcrfr*fr*rfrrgdyg*rgy*sfkeri*kis*keirftiiry*rfr*
r**qww*****cnyech**wcfqnsrhdcrfiifcr*flikvvlkpfkimqtlrmlka*l
krfqifh*ilkikfqilnstkrvkk*hhk*wilqlmllnllvkehiqcfqltmknksnnd
ennnnnnnkqqqqpqqqqqqprkkqkmktlllkikmkikk*rkvfkkkkkkkkkkkkkkk
kkkkkkkkkkkkkii*kkkkkrkkkkkkkkm*kkkkkkkknkqkqmiicgimkmklmyqq
lkvk*kqilkmkkkkkrkklkkklkiqiknil---

---xxxhnyqyq*****yfnkl*i*y**inf*sw*i*fk*mrrtfqyh*iytry*kiis*
iynesssn*s*syfniin*iis*scfk*n*rii*k*rit*kfikfkyfii**ysyf*n*k
ei*rif**itrvyttikesin*irfmswirkdlsidcnwirvnfnncikysr*estircn
q*******yr*mgnfkik*nfiynh*nhsry*idfsnvnrdh*iktnskl*kiik*ssc*
nykcnfihsrykrwfr*hlsnhvfkeikfslkgptspistpnrkqqk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11780-1 (Contig-U11780-1Q)
/CSM_Contig/Contig-U11780-1Q.Seq.d
(1866 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti... 1025 0.0
Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Conti... 139 1e-32
Contig-U06605-1 (Contig-U06605-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U01526-1 (Contig-U01526-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U11249-1 (Contig-U11249-1Q) /CSM_Contig/Conti... 40 0.008
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti... 38 0.034
Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Conti... 38 0.034
Contig-U13888-1 (Contig-U13888-1Q) /CSM_Contig/Conti... 38 0.034
Contig-U12928-1 (Contig-U12928-1Q) /CSM_Contig/Conti... 38 0.034

>Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Contig-U11780-1Q.Seq.d
Length = 1866

Score = 1025 bits (517), Expect = 0.0
Identities = 517/517 (100%)
Strand = Plus / Plus


Query: 1 attggtaatgcagtatcaaatacaatcactcaaattgcccgtgtcgatttagatgattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attggtaatgcagtatcaaatacaatcactcaaattgcccgtgtcgatttagatgattca 60


Query: 61 gatgaagattcagaagaggagattatggttgaagaggatattgaagtttcaaagaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatgaagattcagaagaggagattatggttgaagaggatattgaagtttcaaagaaagaa 120


Query: 121 tatgaaagatatcatagaaagaaattaggtttaccattatcagatactgaagattcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatgaaagatatcatagaaagaaattaggtttaccattatcagatactgaagattcagat 180


Query: 181 aacgataatgacaatggtggtgatgataatgataatgcaattatgaatgccattgataat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacgataatgacaatggtggtgatgataatgataatgcaattatgaatgccattgataat 240


Query: 241 ggtgttttcaaaacagccgacatgattgcagattcattatattttgcaggtagtttctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtgttttcaaaacagccgacatgattgcagattcattatattttgcaggtagtttctta 300


Query: 301 tcaaggtggttttaaaaccgttcaagataatgcaaacattgagaatgttaaaggcctaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaaggtggttttaaaaccgttcaagataatgcaaacattgagaatgttaaaggcctaac 360


Query: 361 tcaagaggtttcaaatatttcactagatactaaaaataaaatttcaaattctgaactcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaagaggtttcaaatatttcactagatactaaaaataaaatttcaaattctgaactcta 420


Query: 421 cgaaaagagtcaaaaaatagcatcacaaatgatggattcttcagttgatgctcttgaatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgaaaagagtcaaaaaatagcatcacaaatgatggattcttcagttgatgctcttgaatc 480


Query: 481 tgttggtcaaagagcatattcaatgttttcaactcac 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgttggtcaaagagcatattcaatgttttcaactcac 517


Score = 967 bits (488), Expect = 0.0
Identities = 488/488 (100%)
Strand = Plus / Plus


Query: 1057 cttcaacaaattatgaatttaatattaatgaatcaatttttgaagctggtgaatttgatt 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 cttcaacaaattatgaatttaatattaatgaatcaatttttgaagctggtgaatttgatt 1116


Query: 1117 caagtaaatgcgcagaacatttcaatatcactaaatttatacaagatattgaaaaattat 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 caagtaaatgcgcagaacatttcaatatcactaaatttatacaagatattgaaaaattat 1176


Query: 1177 cagttgaatctacaatgaaagctcatcaaattaatcgtaaagttatttcaacatcatcaa 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 cagttgaatctacaatgaaagctcatcaaattaatcgtaaagttatttcaacatcatcaa 1236


Query: 1237 ttaaatcatcagttgatcttgttttaaatgaaattaaagaattatttgaaaatgaagaat 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 ttaaatcatcagttgatcttgttttaaatgaaattaaagaattatttgaaaatgaagaat 1296


Query: 1297 tacctgaaaatttatcaaattcaaatactttatcatttagtaatattcatatttttgaaa 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 tacctgaaaatttatcaaattcaaatactttatcatttagtaatattcatatttttgaaa 1356


Query: 1357 ttgaaaagaaatatagagaattttttgataaattacaagagtttacaccacaattaaaga 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 ttgaaaagaaatatagagaattttttgataaattacaagagtttacaccacaattaaaga 1416


Query: 1417 atcaatcaattgaattaggtttatgtcgtggattagaaaagatttatcaattgactgcaa 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 atcaatcaattgaattaggtttatgtcgtggattagaaaagatttatcaattgactgcaa 1476


Query: 1477 ttggattagagttaatttcaacaattgcatcaagtattccagatgagaaagcaccatcag 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ttggattagagttaatttcaacaattgcatcaagtattccagatgagaaagcaccatcag 1536


Query: 1537 atgtaacc 1544
||||||||
Sbjct: 1537 atgtaacc 1544


Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus


Query: 1570 caggtgaatgggcaatttcaaaatcaaatgaaattttatttacaatcactaaaatcactc 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 caggtgaatgggcaatttcaaaatcaaatgaaattttatttacaatcactaaaatcactc 1629


Query: 1630 aagatattaaattgatttcagcaatgttaacagagatcattaaatcaaaacaaactccaa 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 aagatattaaattgatttcagcaatgttaacagagatcattaaatcaaaacaaactccaa 1689


Query: 1690 actctagaaaattattaaataatcttcatgttgaaactacaaatgcaatttcatacattc 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 actctagaaaattattaaataatcttcatgttgaaactacaaatgcaatttcatacattc 1749


Query: 1750 aagatacaaaaggtggtttcgttaacatttgtcaaatcatgtatttaaagaaattaaatt 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 aagatacaaaaggtggtttcgttaacatttgtcaaatcatgtatttaaagaaattaaatt 1809


Query: 1810 ttcattaaaaggtccaacttcaccaatttcaacaccaaatagaaagcaacaaaaatc 1866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 ttcattaaaaggtccaacttcaccaatttcaacaccaaatagaaagcaacaaaaatc 1866


Score = 147 bits (74), Expect = 5e-35
Identities = 74/74 (100%)
Strand = Plus / Plus


Query: 855 cagatgataatatgtggaataatgaagatgaaattgatgtaccaacagttgaaggtgaaa 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cagatgataatatgtggaataatgaagatgaaattgatgtaccaacagttgaaggtgaaa 914


Query: 915 tagaaacagatatt 928
||||||||||||||
Sbjct: 915 tagaaacagatatt 928


Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1021 ccacaactaccaatacc 1037
|||||||||||||||||
Sbjct: 1021 ccacaactaccaatacc 1037


>Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Contig-U11113-1Q.Seq.d
Length = 2323

Score = 139 bits (70), Expect = 1e-32
Identities = 73/74 (98%)
Strand = Plus / Plus


Query: 855 cagatgataatatgtggaataatgaagatgaaattgatgtaccaacagttgaaggtgaaa 914
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1346 cagatgataatatgtggaataatgaagatgaaatcgatgtaccaacagttgaaggtgaaa 1405


Query: 915 tagaaacagatatt 928
||||||||||||||
Sbjct: 1406 tagaaacagatatt 1419


>Contig-U06605-1 (Contig-U06605-1Q) /CSM_Contig/Contig-U06605-1Q.Seq.d
Length = 529

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1262 aaatgaaattaaagaattatt 1282
|||||||||||||||||||||
Sbjct: 117 aaatgaaattaaagaattatt 137


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,573
Number of Sequences: 6905
Number of extensions: 33573
Number of successful extensions: 4429
Number of sequences better than 10.0: 577
length of query: 1866
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1850
effective length of database: 5,564,391
effective search space: 10294123350
effective search space used: 10294123350
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.27
Homology vs DNA
Query= Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Contig-U11780-1Q.Seq.d
(1866 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ380641) Dictyostelium discoideum cDNA clone:ddc38h19, 3' ... 967 0.0 3
(BJ376418) Dictyostelium discoideum cDNA clone:ddc28p07, 3' ... 605 0.0 2
(BJ377495) Dictyostelium discoideum cDNA clone:ddc24e23, 3' ... 930 0.0 1
(BJ366397) Dictyostelium discoideum cDNA clone:ddc38h19, 5' ... 147 2e-30 1
(BJ363776) Dictyostelium discoideum cDNA clone:ddc28p07, 5' ... 147 2e-30 1
(BJ346198) Dictyostelium discoideum cDNA clone:dda30m06, 3' ... 139 4e-28 1
(BJ363051) Dictyostelium discoideum cDNA clone:ddc24e23, 5' ... 129 4e-25 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 2e-06 15
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 1e-04 15
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 2e-04 19
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 3e-04 23
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 4e-04 21
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 7e-04 21
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 9e-04 22
(AC150757) Bos taurus clone CH240-273D1, WORKING DRAFT SEQUE... 44 0.001 2
(CP000866) Nitrosopumilus maritimus SCM1, complete genome. 36 0.001 25
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.002 12
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.021 20
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.024 18
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.039 20
(DJ008493) Methods and Compositions for Differentiating Tiss... 40 0.041 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.046 19
(CS039423) Sequence 233 from Patent WO2005019477. 40 0.047 2
(CS039422) Sequence 232 from Patent WO2005019477. 40 0.047 2
(AC206455) Pongo abelii BAC clone CH276-167G4 from chromosom... 40 0.048 2
(AL670296) Human DNA sequence from clone XXbac-213L12 on chr... 40 0.049 2
(Z84814) Human DNA sequence from clone RP1-172K2 on chromoso... 40 0.049 2
(CR759773) Human DNA sequence from clone DAMC-185H11 on chro... 40 0.050 2
(BX255945) Human DNA sequence from clone DASS-380D18 on chro... 40 0.050 2
(AL935032) Human DNA sequence from clone DAQB-184K4 on chrom... 40 0.050 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.059 13
(FE068561) LV_ES_RA48C19f Litopenaeus vannamei eyestalk cDNA... 40 0.062 2
(AL008970) Plasmodium falciparum MAL3P4. 32 0.062 11
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 0.065 15
(AM456250) Vitis vinifera contig VV78X123832.6, whole genome... 52 0.078 1
(AM430870) Vitis vinifera, whole genome shotgun sequence, co... 52 0.078 1
(U00064) Caenorhabditis elegans cosmid ZC155, complete seque... 52 0.078 1
(CP000312) Clostridium perfringens SM101, complete genome. 34 0.11 24
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.13 17
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 0.18 20
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.21 16
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 0.21 17
(CV240410) WS0251.B21_E22 PT-MB-N-A-15 Populus trichocarpa c... 34 0.23 2
(CN520230) GQ0107.B3_C17 GQ010 Populus trichocarpa x Populus... 34 0.23 2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.24 19
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 34 0.24 23
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 34 0.24 23
(AC083830) Homo sapiens chromosome UL clone RP11-495K24, WOR... 50 0.31 1
(AC201587) Strongylocentrotus purpuratus clone R3-4017C15, W... 50 0.31 1
(AC181749) Strongylocentrotus purpuratus clone R3-1036P18, W... 38 0.31 7
(DN309908) PL06006A1A08 cDNA from juvenile hermaphodites Sch... 36 0.38 3
(DN302900) PL05001B1G02 cDNA from sexually mature hermaphodi... 36 0.39 3
(DN310547) PL06007B2A05 cDNA from juvenile hermaphodites Sch... 36 0.43 3
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 34 0.46 23
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 0.48 15
(EJ538512) 1092955330788 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.48 3
(EJ325650) 1092963382082 Global-Ocean-Sampling_GS-28-01-01-1... 40 0.57 3
(ED727898) GM_WBb0083L08.f GM_WBb Glycine max genomic clone ... 36 0.59 3
(EJ546362) 1092956092306 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.60 3
(CP000399) Borrelia afzelii PKo plasmid lp32, complete seque... 32 0.62 7
(AX926716) Sequence 6 from Patent WO03084989. 36 0.63 15
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25... 34 0.63 21
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 32 0.65 9
(AC151240) Bos taurus clone CH240-421P14, WORKING DRAFT SEQU... 34 0.66 2
(AC149600) Medicago truncatula chromosome 2 clone mte1-41j24... 36 0.66 2
(AC168571) Strongylocentrotus purpuratus clone R3-3065M21, W... 34 0.66 2
(CP000033) Lactobacillus acidophilus NCFM, complete genome. 38 0.78 23
(AL844869) Mouse DNA sequence from clone RP23-437K18 on chro... 38 0.79 9
(AC225468) Medicago truncatula clone mth2-175c18, WORKING DR... 36 0.81 7
(BX548174) Prochlorococcus marinus MED4 complete genome. 34 0.83 20
(CG922593) MBEAE78TF mth2 Medicago truncatula genomic clone ... 36 0.85 2
(CG965978) MBEGN59TF mth2 Medicago truncatula genomic clone ... 36 0.86 2
(CP000049) Borrelia turicatae 91E135, complete genome. 36 0.86 20
(AE015927) Clostridium tetani E88, complete genome. 36 0.86 20
(CR481579) mth2-145E21FM1 BAC end, cultivar Jemalong A17 of ... 36 0.87 2
(AP008972) Finegoldia magna ATCC 29328 plasmid pFMC DNA, com... 34 0.87 11
(CE762178) tigr-gss-dog-17000370070079 Dog Library Canis lup... 34 0.91 2
(AE017308) Mycoplasma mobile 163K complete genome. 32 0.94 22
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 34 0.95 20
(ES450816) 25786 Myzus persicae 2001-12 (red), Fenton Myzus ... 40 0.95 2
(CU467590) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.99 9
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 1.0 17
(ES450373) 25343 Myzus persicae 2001-12 (red), Fenton Myzus ... 40 1.0 2
(CP000046) Staphylococcus aureus subsp. aureus COL, complete... 38 1.1 22
(AC177725) Strongylocentrotus purpuratus clone R3-1008P11, W... 46 1.1 6
(CR382297) Zebrafish DNA sequence from clone CH211-195D9 in ... 48 1.2 1
(BD428923) Method and nucleic acids for pharmacogenomic meth... 48 1.2 1
(AX348402) Sequence 97 from Patent WO0202806. 48 1.2 1
(AL611933) Human DNA sequence from clone RP11-374C13 on chro... 48 1.2 1
(CU570979) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.2 1
(AC231870) Solanum tuberosum chromosome 6 clone RHPOTKEY038C... 48 1.2 1
(AC216485) Cavia porcellus clone CH234-73J22, WORKING DRAFT ... 48 1.2 1
(AC203339) Zea mays chromosome 10 clone CH201-111K9; ZMMBBc0... 48 1.2 1
(AC199625) Zea mays chromosome 10 clone CH201-286M5; ZMMBBc0... 48 1.2 1
(AC194536) Pan troglodytes chromosome 1 clone CH251-614M11, ... 48 1.2 1
(AC181167) Strongylocentrotus purpuratus clone R3-15N15, WOR... 48 1.2 1
(AC179712) Strongylocentrotus purpuratus clone R3-1021G18, W... 48 1.2 1
(AC176233) Strongylocentrotus purpuratus clone R3-3005E14, W... 48 1.2 1
(AC176168) Strongylocentrotus purpuratus clone R3-3019E21, W... 48 1.2 1
(ER529180) 1093015735748 Global-Ocean-Sampling_GS-35-01-01-1... 48 1.2 1

>(BJ380641) Dictyostelium discoideum cDNA clone:ddc38h19, 3' end,
single read.
Length = 847

Score = 967 bits (488), Expect(3) = 0.0
Identities = 488/488 (100%)
Strand = Plus / Minus


Query: 1057 cttcaacaaattatgaatttaatattaatgaatcaatttttgaagctggtgaatttgatt 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cttcaacaaattatgaatttaatattaatgaatcaatttttgaagctggtgaatttgatt 752


Query: 1117 caagtaaatgcgcagaacatttcaatatcactaaatttatacaagatattgaaaaattat 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 caagtaaatgcgcagaacatttcaatatcactaaatttatacaagatattgaaaaattat 692


Query: 1177 cagttgaatctacaatgaaagctcatcaaattaatcgtaaagttatttcaacatcatcaa 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 cagttgaatctacaatgaaagctcatcaaattaatcgtaaagttatttcaacatcatcaa 632


Query: 1237 ttaaatcatcagttgatcttgttttaaatgaaattaaagaattatttgaaaatgaagaat 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttaaatcatcagttgatcttgttttaaatgaaattaaagaattatttgaaaatgaagaat 572


Query: 1297 tacctgaaaatttatcaaattcaaatactttatcatttagtaatattcatatttttgaaa 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tacctgaaaatttatcaaattcaaatactttatcatttagtaatattcatatttttgaaa 512


Query: 1357 ttgaaaagaaatatagagaattttttgataaattacaagagtttacaccacaattaaaga 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttgaaaagaaatatagagaattttttgataaattacaagagtttacaccacaattaaaga 452


Query: 1417 atcaatcaattgaattaggtttatgtcgtggattagaaaagatttatcaattgactgcaa 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atcaatcaattgaattaggtttatgtcgtggattagaaaagatttatcaattgactgcaa 392


Query: 1477 ttggattagagttaatttcaacaattgcatcaagtattccagatgagaaagcaccatcag 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttggattagagttaatttcaacaattgcatcaagtattccagatgagaaagcaccatcag 332


Query: 1537 atgtaacc 1544
||||||||
Sbjct: 331 atgtaacc 324

Score = 589 bits (297), Expect(3) = 0.0
Identities = 297/297 (100%)
Strand = Plus / Minus


Query: 1570 caggtgaatgggcaatttcaaaatcaaatgaaattttatttacaatcactaaaatcactc 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 caggtgaatgggcaatttcaaaatcaaatgaaattttatttacaatcactaaaatcactc 239


Query: 1630 aagatattaaattgatttcagcaatgttaacagagatcattaaatcaaaacaaactccaa 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aagatattaaattgatttcagcaatgttaacagagatcattaaatcaaaacaaactccaa 179


Query: 1690 actctagaaaattattaaataatcttcatgttgaaactacaaatgcaatttcatacattc 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 actctagaaaattattaaataatcttcatgttgaaactacaaatgcaatttcatacattc 119


Query: 1750 aagatacaaaaggtggtttcgttaacatttgtcaaatcatgtatttaaagaaattaaatt 1809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aagatacaaaaggtggtttcgttaacatttgtcaaatcatgtatttaaagaaattaaatt 59


Query: 1810 ttcattaaaaggtccaacttcaccaatttcaacaccaaatagaaagcaacaaaaatc 1866
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttcattaaaaggtccaacttcaccaatttcaacaccaaatagaaagcaacaaaaatc 2

Score = 34.2 bits (17), Expect(3) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1021 ccacaactaccaatacc 1037
|||||||||||||||||
Sbjct: 847 ccacaactaccaatacc 831

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,963,569,911
Number of extensions: 130774924
Number of successful extensions: 11612256
Number of sequences better than 10.0: 308
Length of query: 1866
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1842
Effective length of database: 97,308,875,965
Effective search space: 179242949527530
Effective search space used: 179242949527530
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Contig-U11780-1Q.Seq.d
(1866 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,601,696,965
Number of extensions: 25294400
Number of successful extensions: 85761
Number of sequences better than 10.0: 0
Number of HSP's gapped: 85728
Number of HSP's successfully gapped: 0
Length of query: 622
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 487
Effective length of database: 614,245,399
Effective search space: 299137509313
Effective search space used: 299137509313
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.85 gvh: 0.14 alm: 0.38 top: 0.20 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U11780-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0