Contig-U11780-1 |
Contig ID |
Contig-U11780-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1856 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
2773085 |
End point |
2771332 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
8 |
Link to clone list |
U11780 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.27 |
Homology vs DNA |
Query= Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Contig-U11780-1Q.Seq.d (1866 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ380641) Dictyostelium discoideum cDNA clone:ddc38h19, 3' ... 967 0.0 3 (BJ376418) Dictyostelium discoideum cDNA clone:ddc28p07, 3' ... 605 0.0 2 (BJ377495) Dictyostelium discoideum cDNA clone:ddc24e23, 3' ... 930 0.0 1 (BJ366397) Dictyostelium discoideum cDNA clone:ddc38h19, 5' ... 147 2e-30 1 (BJ363776) Dictyostelium discoideum cDNA clone:ddc28p07, 5' ... 147 2e-30 1 (BJ346198) Dictyostelium discoideum cDNA clone:dda30m06, 3' ... 139 4e-28 1 (BJ363051) Dictyostelium discoideum cDNA clone:ddc24e23, 5' ... 129 4e-25 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 2e-06 15 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 1e-04 15 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 2e-04 19 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 3e-04 23 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 4e-04 21 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 7e-04 21 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 9e-04 22 (AC150757) Bos taurus clone CH240-273D1, WORKING DRAFT SEQUE... 44 0.001 2 (CP000866) Nitrosopumilus maritimus SCM1, complete genome. 36 0.001 25 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.002 12 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.021 20 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.024 18 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.039 20 (DJ008493) Methods and Compositions for Differentiating Tiss... 40 0.041 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.046 19 (CS039423) Sequence 233 from Patent WO2005019477. 40 0.047 2 (CS039422) Sequence 232 from Patent WO2005019477. 40 0.047 2 (AC206455) Pongo abelii BAC clone CH276-167G4 from chromosom... 40 0.048 2 (AL670296) Human DNA sequence from clone XXbac-213L12 on chr... 40 0.049 2 (Z84814) Human DNA sequence from clone RP1-172K2 on chromoso... 40 0.049 2 (CR759773) Human DNA sequence from clone DAMC-185H11 on chro... 40 0.050 2 (BX255945) Human DNA sequence from clone DASS-380D18 on chro... 40 0.050 2 (AL935032) Human DNA sequence from clone DAQB-184K4 on chrom... 40 0.050 2 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.059 13 (FE068561) LV_ES_RA48C19f Litopenaeus vannamei eyestalk cDNA... 40 0.062 2 (AL008970) Plasmodium falciparum MAL3P4. 32 0.062 11 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 0.065 15 (AM456250) Vitis vinifera contig VV78X123832.6, whole genome... 52 0.078 1 (AM430870) Vitis vinifera, whole genome shotgun sequence, co... 52 0.078 1 (U00064) Caenorhabditis elegans cosmid ZC155, complete seque... 52 0.078 1 (CP000312) Clostridium perfringens SM101, complete genome. 34 0.11 24 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.13 17 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 0.18 20 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.21 16 (AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 0.21 17 (CV240410) WS0251.B21_E22 PT-MB-N-A-15 Populus trichocarpa c... 34 0.23 2 (CN520230) GQ0107.B3_C17 GQ010 Populus trichocarpa x Populus... 34 0.23 2 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 0.24 19 (CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 34 0.24 23 (CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 34 0.24 23 (AC083830) Homo sapiens chromosome UL clone RP11-495K24, WOR... 50 0.31 1 (AC201587) Strongylocentrotus purpuratus clone R3-4017C15, W... 50 0.31 1 (AC181749) Strongylocentrotus purpuratus clone R3-1036P18, W... 38 0.31 7 (DN309908) PL06006A1A08 cDNA from juvenile hermaphodites Sch... 36 0.38 3 (DN302900) PL05001B1G02 cDNA from sexually mature hermaphodi... 36 0.39 3 (DN310547) PL06007B2A05 cDNA from juvenile hermaphodites Sch... 36 0.43 3 (CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 34 0.46 23 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 0.48 15 (EJ538512) 1092955330788 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.48 3 (EJ325650) 1092963382082 Global-Ocean-Sampling_GS-28-01-01-1... 40 0.57 3 (ED727898) GM_WBb0083L08.f GM_WBb Glycine max genomic clone ... 36 0.59 3 (EJ546362) 1092956092306 Global-Ocean-Sampling_GS-29-01-01-1... 36 0.60 3 (CP000399) Borrelia afzelii PKo plasmid lp32, complete seque... 32 0.62 7 (AX926716) Sequence 6 from Patent WO03084989. 36 0.63 15 (BX571856) Staphylococcus aureus subsp. aureus strain MRSA25... 34 0.63 21 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 32 0.65 9 (AC151240) Bos taurus clone CH240-421P14, WORKING DRAFT SEQU... 34 0.66 2 (AC149600) Medicago truncatula chromosome 2 clone mte1-41j24... 36 0.66 2 (AC168571) Strongylocentrotus purpuratus clone R3-3065M21, W... 34 0.66 2 (CP000033) Lactobacillus acidophilus NCFM, complete genome. 38 0.78 23 (AL844869) Mouse DNA sequence from clone RP23-437K18 on chro... 38 0.79 9 (AC225468) Medicago truncatula clone mth2-175c18, WORKING DR... 36 0.81 7 (BX548174) Prochlorococcus marinus MED4 complete genome. 34 0.83 20 (CG922593) MBEAE78TF mth2 Medicago truncatula genomic clone ... 36 0.85 2 (CG965978) MBEGN59TF mth2 Medicago truncatula genomic clone ... 36 0.86 2 (CP000049) Borrelia turicatae 91E135, complete genome. 36 0.86 20 (AE015927) Clostridium tetani E88, complete genome. 36 0.86 20 (CR481579) mth2-145E21FM1 BAC end, cultivar Jemalong A17 of ... 36 0.87 2 (AP008972) Finegoldia magna ATCC 29328 plasmid pFMC DNA, com... 34 0.87 11 (CE762178) tigr-gss-dog-17000370070079 Dog Library Canis lup... 34 0.91 2 (AE017308) Mycoplasma mobile 163K complete genome. 32 0.94 22 (BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 34 0.95 20 (ES450816) 25786 Myzus persicae 2001-12 (red), Fenton Myzus ... 40 0.95 2 (CU467590) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.99 9 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 1.0 17 (ES450373) 25343 Myzus persicae 2001-12 (red), Fenton Myzus ... 40 1.0 2 (CP000046) Staphylococcus aureus subsp. aureus COL, complete... 38 1.1 22 (AC177725) Strongylocentrotus purpuratus clone R3-1008P11, W... 46 1.1 6 (CR382297) Zebrafish DNA sequence from clone CH211-195D9 in ... 48 1.2 1 (BD428923) Method and nucleic acids for pharmacogenomic meth... 48 1.2 1 (AX348402) Sequence 97 from Patent WO0202806. 48 1.2 1 (AL611933) Human DNA sequence from clone RP11-374C13 on chro... 48 1.2 1 (CU570979) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.2 1 (AC231870) Solanum tuberosum chromosome 6 clone RHPOTKEY038C... 48 1.2 1 (AC216485) Cavia porcellus clone CH234-73J22, WORKING DRAFT ... 48 1.2 1 (AC203339) Zea mays chromosome 10 clone CH201-111K9; ZMMBBc0... 48 1.2 1 (AC199625) Zea mays chromosome 10 clone CH201-286M5; ZMMBBc0... 48 1.2 1 (AC194536) Pan troglodytes chromosome 1 clone CH251-614M11, ... 48 1.2 1 (AC181167) Strongylocentrotus purpuratus clone R3-15N15, WOR... 48 1.2 1 (AC179712) Strongylocentrotus purpuratus clone R3-1021G18, W... 48 1.2 1 (AC176233) Strongylocentrotus purpuratus clone R3-3005E14, W... 48 1.2 1 (AC176168) Strongylocentrotus purpuratus clone R3-3019E21, W... 48 1.2 1 (ER529180) 1093015735748 Global-Ocean-Sampling_GS-35-01-01-1... 48 1.2 1
>(BJ380641) Dictyostelium discoideum cDNA clone:ddc38h19, 3' end, single read. Length = 847
Score = 967 bits (488), Expect(3) = 0.0 Identities = 488/488 (100%) Strand = Plus / Minus
Query: 1057 cttcaacaaattatgaatttaatattaatgaatcaatttttgaagctggtgaatttgatt 1116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 811 cttcaacaaattatgaatttaatattaatgaatcaatttttgaagctggtgaatttgatt 752
Query: 1117 caagtaaatgcgcagaacatttcaatatcactaaatttatacaagatattgaaaaattat 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 caagtaaatgcgcagaacatttcaatatcactaaatttatacaagatattgaaaaattat 692
Query: 1177 cagttgaatctacaatgaaagctcatcaaattaatcgtaaagttatttcaacatcatcaa 1236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 cagttgaatctacaatgaaagctcatcaaattaatcgtaaagttatttcaacatcatcaa 632
Query: 1237 ttaaatcatcagttgatcttgttttaaatgaaattaaagaattatttgaaaatgaagaat 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 ttaaatcatcagttgatcttgttttaaatgaaattaaagaattatttgaaaatgaagaat 572
Query: 1297 tacctgaaaatttatcaaattcaaatactttatcatttagtaatattcatatttttgaaa 1356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 tacctgaaaatttatcaaattcaaatactttatcatttagtaatattcatatttttgaaa 512
Query: 1357 ttgaaaagaaatatagagaattttttgataaattacaagagtttacaccacaattaaaga 1416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 ttgaaaagaaatatagagaattttttgataaattacaagagtttacaccacaattaaaga 452
Query: 1417 atcaatcaattgaattaggtttatgtcgtggattagaaaagatttatcaattgactgcaa 1476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 atcaatcaattgaattaggtttatgtcgtggattagaaaagatttatcaattgactgcaa 392
Query: 1477 ttggattagagttaatttcaacaattgcatcaagtattccagatgagaaagcaccatcag 1536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 ttggattagagttaatttcaacaattgcatcaagtattccagatgagaaagcaccatcag 332
Query: 1537 atgtaacc 1544 |||||||| Sbjct: 331 atgtaacc 324
Score = 589 bits (297), Expect(3) = 0.0 Identities = 297/297 (100%) Strand = Plus / Minus
Query: 1570 caggtgaatgggcaatttcaaaatcaaatgaaattttatttacaatcactaaaatcactc 1629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 caggtgaatgggcaatttcaaaatcaaatgaaattttatttacaatcactaaaatcactc 239
Query: 1630 aagatattaaattgatttcagcaatgttaacagagatcattaaatcaaaacaaactccaa 1689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 aagatattaaattgatttcagcaatgttaacagagatcattaaatcaaaacaaactccaa 179
Query: 1690 actctagaaaattattaaataatcttcatgttgaaactacaaatgcaatttcatacattc 1749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 actctagaaaattattaaataatcttcatgttgaaactacaaatgcaatttcatacattc 119
Query: 1750 aagatacaaaaggtggtttcgttaacatttgtcaaatcatgtatttaaagaaattaaatt 1809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 aagatacaaaaggtggtttcgttaacatttgtcaaatcatgtatttaaagaaattaaatt 59
Query: 1810 ttcattaaaaggtccaacttcaccaatttcaacaccaaatagaaagcaacaaaaatc 1866 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58 ttcattaaaaggtccaacttcaccaatttcaacaccaaatagaaagcaacaaaaatc 2
Score = 34.2 bits (17), Expect(3) = 0.0 Identities = 17/17 (100%) Strand = Plus / Minus
Query: 1021 ccacaactaccaatacc 1037 ||||||||||||||||| Sbjct: 847 ccacaactaccaatacc 831
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,963,569,911 Number of extensions: 130774924 Number of successful extensions: 11612256 Number of sequences better than 10.0: 308 Length of query: 1866 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1842 Effective length of database: 97,308,875,965 Effective search space: 179242949527530 Effective search space used: 179242949527530 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
3 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |