>Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Contig-U11764-1Q.Seq.d
AATCGAAAGTAAATTCCTTCAAGCATTGGCCCATCCAGGTGAAATGGTAG
GTGCATTGGCAGCACAATCAATTGGTGAACCAGCAACACAAATGACACTT
AATACTTTCCATTATGCTGGTGTAAGTAGTAAGAATGTAACATTGGGTGT
ACCACGTCTAAAGGAAATCATTAACATTGCCAAACAAGTGAAAACACCAT
CCCTCACCATCTATTTGAAACCACATATGGCTCGTGATATGGATCGTGCA
AAGATTGTAAAATCACAACTCGAATATACTACACTTGCAAATGTAACCTC
TGCAACCGAAATCTACTATGATCCTGATCCACAAAATACCATCATCAGTG
AAGATGCTGAATTTGTAAATAGTTATTTCGAACTTCCAGATGAAGAGATC
GATGTTCATAGTATGTCACCTTGGTTACTTCGTATCGAATTGGATAGAGG
TATGGTTACCGATAAAAAGTTAACAATGGCCGATATCACTCAATGTGTCG
TTAGAGATTTCGGTCTAAGTTTAAATTGTATTTTTAGTGATGATAATGCC
GAGAAACTCATTCTTCGTATTCGTATGGTAGAGAGTCAAGAAACAAAAGG
TACCGACAATGATGATGATGATCAATTCCTTCGTCGTATCGAATCAAATA
TGCTCAGTGAAATGGTT----------CCGTGCTGAAGTCATTGAAATTA
TGATGGTACCACGTCAAATCGTTTCACCACAATCAAATCGTCCTGTAATG
GGTATTGTACAAGATACTCTATTGGGTAGTCGTCTCTTTACAAAACGTGA
TTGCTTTATGGAAAAAGATTTAGTAATGAACATATTAATGTGGTTACCAT
CTTGGGATGGTAAAGTACCACCACCAGCAATCTTAAAACCAAAACAACTT
TGGACAGGTAAACAACTTTTCTCACTCATCATTCCCGATATAAATTTAAT
TCGTTTCACATCGACTCACAATGATAAAGAACCAAATGGATGTTCGGCCG
GTGATACTCGTGTCATCATTGAAAGAGGTGAACTATTGGCAGGTATTCTT
TGTAAACGTTCATTAGGTGCAGCAAATGGTTCAATCATTCATGTGGTCAT
GAATGAACATGGTCATGATACTTGTCGTCTTTTCATTGATCAAACTCAAA
CCGTTGTCAATCATTGGTTAATTAATCGTGGTTTCACTATGGGTATTGGT
GATACCATTGCAGATTCTGCAACAATGGCAAAGGTTACTCTTACCATTTC
CTCTGCAAAGAATCAAGTAAAAGAATTGATTATCAAAGCTCAAAATAAAC
AATTTGAATGTCAACCAGGTAAATCTGTAATTGAAACTTTTGAACAAAAA
GTAAATCAAGTATTAAATAAGGCTCGTGATACCGCTGGTAGTAGTGCACA
AGATTCCCTNTTTGAGGATAACAATTTAAAGGNGATGGTAACTGCAGGTT
CAAAAGGTTNTTTCATCAATATTTCACAGATGATGGNTTGTGTAGGTCAA
CAAAATGTNGAAGGTAAACGTATTCCATTTGGTTTCCAAAGTAGAACATT
ACCACACTTCACCATCATACTTTCCAACTTCACCATCATATTCACCAACC
TCTCCTTCANACTCACCAACCTCACCATTTTATTCACCAACCTCACCATC
ATATTCACCATCATCCCCATTTTATTCACCAAGTTCGCCATCATATTCAC
CAAGTTCACCATCATACTCACCATCATCACCAACCTTTACAAACAAATAT
AACTATCAACCAAATAATAAAAAGAAATAGATCAACATTAAGATACCATT
TCCTATTTTAAATATTTAATTTGTATATAAATAAATTTAAACTTAACAAA
TTAACAAAATATAAAAAAAAAAATAAACAAAAAAAAAAAAAAAAATAATA
AATTTATTTATACAAAAAAA

est1=CHH389F,1,667
est2=SLJ186F,162,382
est3=AHN301F,668,1223
est4=AHC236F,798,1388
est5=AHN332F,812,1384
est6=VHM557Z,1214,1783
est7=AHC236Z,1236,1863
est8=AHN332Z,1315,1801
est9=CHH389Z,1365,1767
est10=AHN301Z,1401,1864
est11=CHP723Z,1425,1767
est12=SLJ186Z,1604,1870
est13=SLK713Z,1649,1868
est14=SLD707Z,1799,1911

IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA
KQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAE
FVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSD
DNAEKLILRIRMVESQETKGTDNDDDDQFLRRIESNMLSEMV---

---RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLP
SWDGKVPPPAILKPKQLWTGKQLFSLIIPDINLIRFTSTHNDKEPNGCSAGDTRVIIERG
ELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTI
ADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAG
SSAQDSLFEDNNLKXMVTAGSKGXFINISQMMXCVGQQNVEGKRIPFGFQSRTLPHFTII
LSNFTIIFTNLSFXLTNLTILFTNLTIIFTIIPILFTKFAIIFTKFTIILTIITNLYKQI
*lstk**keidqh*dtisyfkylici*inlnltn*qnikkkinkkkkknnkfiytkk

Frame A:
nrk*ipssigpsr*ngrcigstinw*tsntndt*yfplcwck**ecnigcttskgnh*hc
qtsentiphhlfettygs*ygsckdckittriyytckcnlcnrnll*s*stkyhhq*rc*
ick*lfrtsr*rdrcs*yvtlvtsyrig*rygyr*kvnngryhsmcr*rfrskfklyf**
**crethssysygresrnkryrq****sipssyrikyaq*ng---

---pc*sh*nydgttsnrfttiksscngyctrysig*sslykt*llygkrfsnehinvvt
ilgw*stttsnlktkttldr*ttflthhsrykfnsfhidsq**rtkwmfgr*yschh*kr
*tigrysl*tfircskwfnhscghe*tws*ylssfh*snsnrcqslvn*swfhygyw*yh
crfcnngkgysyhflckesskridyqssk*ti*mstr*icn*nf*tkskssik*gs*yrw
**ctrfpx*g*qfkgdgncrfkrxfhqyftddglcrstkcxr*tysiwfpk*nittlhhh
tfqlhhhihqpllxthqphhfihqphhhihhhphfihqvrhhihqvhhhthhhhqplqtn
itinqiikrnrstlryhflf*ifnlyinkfklnkltkykkknkqkkkkk**iylykk

Frame B:
IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA
KQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAE
FVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSD
DNAEKLILRIRMVESQETKGTDNDDDDQFLRRIESNMLSEMV---

---RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLP
SWDGKVPPPAILKPKQLWTGKQLFSLIIPDINLIRFTSTHNDKEPNGCSAGDTRVIIERG
ELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTI
ADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAG
SSAQDSLFEDNNLKXMVTAGSKGXFINISQMMXCVGQQNVEGKRIPFGFQSRTLPHFTII
LSNFTIIFTNLSFXLTNLTILFTNLTIIFTIIPILFTKFAIIFTKFTIILTIITNLYKQI
*lstk**keidqh*dtisyfkylici*inlnltn*qnikkkinkkkkknnkfiytkk

Frame C:
skvnsfkhwpiqvkw*vhwqhnqlvnqqhk*hlilsimlv*vvrm*hwvyhv*rksltlp
nk*khhpspsi*nhiwlviwivqrl*nhnsnilhlqm*plqpkstmilihkipssvkmln
l*ivisnfqmkrsmfivchlgyfvsnwievwlpiks*qwpislnvsleisv*v*ivflvm
imprnsffvfvw*rvkkqkvptmmmminsfvvsnqicsvkw---

---vlkslkl*wyhvksfhhnqivl*wvlykilywvvvslqnvialwkki***ty*cgyh
lgmvkyhhqqs*nqnnfgqvnnfshssfpi*i*fvshrltmiknqmdvrpvilvsslkev
nywqvffvnvh*vqqmvqsfmws*mnmvmilvvfsliklkplsiig*livvslwvlvipl
qilqqwqrlllpfplqrik*kn*lsklkinnlnvnqvnl*lkllnkk*iky*irlviplv
vvhkipxlriti*rxw*lqvqkvxssifhr*wxv*vnkmxkvnvfhlvskvehyhtspsy
fptspsysptspsxsptspfysptspsyspsspfyspsspsyspsspsyspssptftnky
nyqpnnkkk*inikipfpilni*fvyk*i*t*qinki*kkk*tkkkkkiinlfiqk

Query= Contig-U11764-1 (Contig-U11764-1Q)
/CSM_Contig/Contig-U11764-1Q.Seq.d
         (1920 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Conti...  3596  0.0
Contig-U13120-1 (Contig-U13120-1Q) /CSM_Contig/Conti...   420  e-117
Contig-U11617-1 (Contig-U11617-1Q) /CSM_Contig/Conti...    50  9e-06
Contig-U12079-1 (Contig-U12079-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U05912-1 (Contig-U05912-1Q) /CSM_Contig/Conti...    38  0.035
Contig-U14570-1 (Contig-U14570-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U13900-1 (Contig-U13900-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U13530-1 (Contig-U13530-1Q) /CSM_Contig/Conti...    36  0.14
Contig-U12890-1 (Contig-U12890-1Q) /CSM_Contig/Conti...    36  0.14

>Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Contig-U11764-1Q.Seq.d
          Length = 1920

 Score = 3596 bits (1814), Expect = 0.0
 Identities = 1862/1862 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    aatcgaaagtaaattccttcaagcattggcccatccaggtgaaatggtaggtgcattggc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aatcgaaagtaaattccttcaagcattggcccatccaggtgaaatggtaggtgcattggc 60

                                                                        
Query: 61   agcacaatcaattggtgaaccagcaacacaaatgacacttaatactttccattatgctgg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   agcacaatcaattggtgaaccagcaacacaaatgacacttaatactttccattatgctgg 120

                                                                        
Query: 121  tgtaagtagtaagaatgtaacattgggtgtaccacgtctaaaggaaatcattaacattgc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tgtaagtagtaagaatgtaacattgggtgtaccacgtctaaaggaaatcattaacattgc 180

                                                                        
Query: 181  caaacaagtgaaaacaccatccctcaccatctatttgaaaccacatatggctcgtgatat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  caaacaagtgaaaacaccatccctcaccatctatttgaaaccacatatggctcgtgatat 240

                                                                        
Query: 241  ggatcgtgcaaagattgtaaaatcacaactcgaatatactacacttgcaaatgtaacctc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ggatcgtgcaaagattgtaaaatcacaactcgaatatactacacttgcaaatgtaacctc 300

                                                                        
Query: 301  tgcaaccgaaatctactatgatcctgatccacaaaataccatcatcagtgaagatgctga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tgcaaccgaaatctactatgatcctgatccacaaaataccatcatcagtgaagatgctga 360

                                                                        
Query: 361  atttgtaaatagttatttcgaacttccagatgaagagatcgatgttcatagtatgtcacc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  atttgtaaatagttatttcgaacttccagatgaagagatcgatgttcatagtatgtcacc 420

                                                                        
Query: 421  ttggttacttcgtatcgaattggatagaggtatggttaccgataaaaagttaacaatggc 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  ttggttacttcgtatcgaattggatagaggtatggttaccgataaaaagttaacaatggc 480

                                                                        
Query: 481  cgatatcactcaatgtgtcgttagagatttcggtctaagtttaaattgtatttttagtga 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  cgatatcactcaatgtgtcgttagagatttcggtctaagtttaaattgtatttttagtga 540

                                                                        
Query: 541  tgataatgccgagaaactcattcttcgtattcgtatggtagagagtcaagaaacaaaagg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tgataatgccgagaaactcattcttcgtattcgtatggtagagagtcaagaaacaaaagg 600

                                                                        
Query: 601  taccgacaatgatgatgatgatcaattccttcgtcgtatcgaatcaaatatgctcagtga 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  taccgacaatgatgatgatgatcaattccttcgtcgtatcgaatcaaatatgctcagtga 660

                                                                        
Query: 661  aatggttnnnnnnnnnnccgtgctgaagtcattgaaattatgatggtaccacgtcaaatc 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  aatggttnnnnnnnnnnccgtgctgaagtcattgaaattatgatggtaccacgtcaaatc 720

                                                                        
Query: 721  gtttcaccacaatcaaatcgtcctgtaatgggtattgtacaagatactctattgggtagt 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  gtttcaccacaatcaaatcgtcctgtaatgggtattgtacaagatactctattgggtagt 780

                                                                        
Query: 781  cgtctctttacaaaacgtgattgctttatggaaaaagatttagtaatgaacatattaatg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  cgtctctttacaaaacgtgattgctttatggaaaaagatttagtaatgaacatattaatg 840

                                                                        
Query: 841  tggttaccatcttgggatggtaaagtaccaccaccagcaatcttaaaaccaaaacaactt 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tggttaccatcttgggatggtaaagtaccaccaccagcaatcttaaaaccaaaacaactt 900

                                                                        
Query: 901  tggacaggtaaacaacttttctcactcatcattcccgatataaatttaattcgtttcaca 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tggacaggtaaacaacttttctcactcatcattcccgatataaatttaattcgtttcaca 960

                                                                        
Query: 961  tcgactcacaatgataaagaaccaaatggatgttcggccggtgatactcgtgtcatcatt 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tcgactcacaatgataaagaaccaaatggatgttcggccggtgatactcgtgtcatcatt 1020

                                                                        
Query: 1021 gaaagaggtgaactattggcaggtattctttgtaaacgttcattaggtgcagcaaatggt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gaaagaggtgaactattggcaggtattctttgtaaacgttcattaggtgcagcaaatggt 1080

                                                                        
Query: 1081 tcaatcattcatgtggtcatgaatgaacatggtcatgatacttgtcgtcttttcattgat 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tcaatcattcatgtggtcatgaatgaacatggtcatgatacttgtcgtcttttcattgat 1140

                                                                        
Query: 1141 caaactcaaaccgttgtcaatcattggttaattaatcgtggtttcactatgggtattggt 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 caaactcaaaccgttgtcaatcattggttaattaatcgtggtttcactatgggtattggt 1200

                                                                        
Query: 1201 gataccattgcagattctgcaacaatggcaaaggttactcttaccatttcctctgcaaag 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gataccattgcagattctgcaacaatggcaaaggttactcttaccatttcctctgcaaag 1260

                                                                        
Query: 1261 aatcaagtaaaagaattgattatcaaagctcaaaataaacaatttgaatgtcaaccaggt 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aatcaagtaaaagaattgattatcaaagctcaaaataaacaatttgaatgtcaaccaggt 1320

                                                                        
Query: 1321 aaatctgtaattgaaacttttgaacaaaaagtaaatcaagtattaaataaggctcgtgat 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaatctgtaattgaaacttttgaacaaaaagtaaatcaagtattaaataaggctcgtgat 1380

                                                                        
Query: 1381 accgctggtagtagtgcacaagattccctntttgaggataacaatttaaaggngatggta 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 accgctggtagtagtgcacaagattccctntttgaggataacaatttaaaggngatggta 1440

                                                                        
Query: 1441 actgcaggttcaaaaggttntttcatcaatatttcacagatgatggnttgtgtaggtcaa 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 actgcaggttcaaaaggttntttcatcaatatttcacagatgatggnttgtgtaggtcaa 1500

                                                                        
Query: 1501 caaaatgtngaaggtaaacgtattccatttggtttccaaagtagaacattaccacacttc 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 caaaatgtngaaggtaaacgtattccatttggtttccaaagtagaacattaccacacttc 1560

                                                                        
Query: 1561 accatcatactttccaacttcaccatcatattcaccaacctctccttcanactcaccaac 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 accatcatactttccaacttcaccatcatattcaccaacctctccttcanactcaccaac 1620

                                                                        
Query: 1621 ctcaccattttattcaccaacctcaccatcatattcaccatcatccccattttattcacc 1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ctcaccattttattcaccaacctcaccatcatattcaccatcatccccattttattcacc 1680

                                                                        
Query: 1681 aagttcgccatcatattcaccaagttcaccatcatactcaccatcatcaccaacctttac 1740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 aagttcgccatcatattcaccaagttcaccatcatactcaccatcatcaccaacctttac 1740

                                                                        
Query: 1741 aaacaaatataactatcaaccaaataataaaaagaaatagatcaacattaagataccatt 1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 aaacaaatataactatcaaccaaataataaaaagaaatagatcaacattaagataccatt 1800

                                                                        
Query: 1801 tcctattttaaatatttaatttgtatataaataaatttaaacttaacaaattaacaaaat 1860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 tcctattttaaatatttaatttgtatataaataaatttaaacttaacaaattaacaaaat 1860

              
Query: 1861 at 1862
            ||
Sbjct: 1861 at 1862


 Score = 36.2 bits (18), Expect = 0.14
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1896 taataaatttatttatac 1913
            ||||||||||||||||||
Sbjct: 1896 taataaatttatttatac 1913


>Contig-U13120-1 (Contig-U13120-1Q) /CSM_Contig/Contig-U13120-1Q.Seq.d
          Length = 873

 Score =  420 bits (212), Expect = e-117
 Identities = 231/239 (96%)
 Strand = Plus / Plus

                                                                        
Query: 1326 tgtaattgaaacttttgaacaaaaagtaaatcaagtattaaataaggctcgtgataccgc 1385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tgtaattgaaacttttgaacaaaaagtaaatcaagtattaaataaggctcgtgataccgc 60

                                                                        
Query: 1386 tggtagtagtgcacaagattccctntttgaggataacaatttaaaggngatggtaactgc 1445
            |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 61   tggtagtagtgcacaagattccctctctgaggataacaatttaaaggcgatggtaactgc 120

                                                                        
Query: 1446 aggttcaaaaggttntttcatcaatatttcacagatgatggnttgtgtaggtcaacaaaa 1505
            |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 121  aggttcaaaaggttctttcatcaatatctcacagatgatggcttgtgtaggtcaacaaaa 180

                                                                       
Query: 1506 tgtngaaggtaaacgtattccatttggtttccaaagtagaacattaccacacttcacca 1564
            ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 181  tgtcgaaggtaaacgtattccatttggtttccaaagtagaacattaccacatttcacca 239


>Contig-U11617-1 (Contig-U11617-1Q) /CSM_Contig/Contig-U11617-1Q.Seq.d
          Length = 2043

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 65   caatcaattggtgaaccagcaacacaaatgacacttaatactttccatt 113
            ||||| |||||||||||| |||| ||||||||  | |||||||||||||
Sbjct: 1482 caatccattggtgaaccatcaactcaaatgactttaaatactttccatt 1530


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,115
Number of Sequences: 6905
Number of extensions: 26115
Number of successful extensions: 3861
Number of sequences better than 10.0: 333
length of query: 1920
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1904
effective length of database: 5,564,391
effective search space: 10594600464
effective search space used: 10594600464
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Contig-U11764-1Q.Seq.d
         (1920 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF058710) Dictyostelium discoideum RNA polymerase II larges...  1673   0.0    1
(BJ365831) Dictyostelium discoideum cDNA clone:ddc36b23, 5' ...  1322   0.0    1
(S52651) RNA polymerase II largest subunit [Dictyostelium di...  1298   0.0    1
(BJ337442) Dictyostelium discoideum cDNA clone:dda57p07, 5' ...  1120   0.0    1
(BJ337312) Dictyostelium discoideum cDNA clone:dda57b01, 5' ...  1102   0.0    1
(BJ331429) Dictyostelium discoideum cDNA clone:dda35g10, 5' ...  1080   0.0    2
(BJ444472) Dictyostelium discoideum cDNA clone:ddv56a15, 3' ...   963   0.0    1
(AU060320) Dictyostelium discoideum slug cDNA, clone SLJ186.      438   e-118  1
(BJ368656) Dictyostelium discoideum cDNA clone:ddc47h15, 5' ...   420   e-113  1
(BJ355413) Dictyostelium discoideum cDNA clone:dda57b01, 3' ...   339   e-109  2
(AU053595) Dictyostelium discoideum slug cDNA, clone SLJ186.      361   6e-95  1
(BJ380022) Dictyostelium discoideum cDNA clone:ddc36b23, 3' ...   307   8e-79  1
(BJ355551) Dictyostelium discoideum cDNA clone:dda57p07, 3' ...   299   2e-76  1
(BJ383482) Dictyostelium discoideum cDNA clone:ddc53n05, 3' ...   260   3e-73  2
(AU054101) Dictyostelium discoideum slug cDNA, clone SLK713.      274   1e-68  1
(BJ349080) Dictyostelium discoideum cDNA clone:dda35g10, 3' ...   236   1e-62  2
(EF014381) Mucor hiemalis RNA polymerase II largest subunit ...    84   1e-27  5
(DJ208817) Method for identification of useful proteins deri...    76   4e-27  3
(AB077098) Mucor mucedo RPB1 gene for DNA-dependent RNA poly...    84   9e-24  5
(CR382133) Debaryomyces hansenii chromosome A of strain CBS7...    74   2e-23  4
(AB077100) Conidiobolus coronatus RPB1 gene for DNA-dependen...    98   5e-23  2
(EA376428) Sequence 25251 from patent US 7314974.                  76   6e-23  3
(Z74188) S.cerevisiae chromosome IV reading frame ORF YDL140c.     76   9e-23  3
(DQ294591) Conidiobolus coronatus isolate AFTOL-ID 137 RNA p...    80   1e-22  4
(DJ129733) Method for identification of useful proteins deri...    72   2e-22  7
(EU161965) Choriorhabditis dudichi strain SB122 RNA polymera...    98   1e-21  3
(X03128) Yeast gene RPO21 for RNA polymerase II largest subu...    76   1e-21  3
(EA481415) Sequence 75 from patent US 7344885.                     76   1e-21  3
(X96876) S.cerevisiae DNA of cosmid from chromosome IV, stra...    76   2e-21  3
(AF395110) Naegleria gruberi RNA polymerase II largest subun...    62   3e-21  5
(CL970131) OsIFCC019702 Oryza sativa Express Library Oryza s...    62   1e-20  8
(AM183921) Geosiphon pyriformis partial RPB1 gene for RNA po...    54   2e-20  6
(DQ996230) Nosema apis RNA polymerase II largest subunit (RP...    84   9e-20  2
(BJ419646) Dictyostelium discoideum cDNA clone:ddv36b21, 5' ...   111   1e-19  1
(AX489341) Sequence 6641 from Patent WO02053728.                   72   4e-18  4
(AR548763) Sequence 3894 from patent US 6747137.                   72   1e-17  2
(CA156070) SCBFRZ3009H12.g RZ3 Saccharum officinarum cDNA cl...    86   5e-17  3
(EU699888) Meloidogyne fallax clone Mf.1 RNA polymerase II l...    56   9e-17  3
(EU699887) Meloidogyne chitwoodi clone Mc.2 RNA polymerase I...    56   9e-17  3
(EU699886) Meloidogyne chitwoodi clone Mc.3 RNA polymerase I...    56   9e-17  3
(EU699885) Meloidogyne fallax clone Mf2.2 RNA polymerase II ...    56   9e-17  3
(EU699884) Meloidogyne chitwoodi clone Mc.1 RNA polymerase I...    56   9e-17  3
(EU699883) Meloidogyne chitwoodi clone Mc.4 RNA polymerase I...    56   9e-17  3
(AY945170) Triepeolus robustus voucher Trrz635 RNA polymeras...    70   2e-16  4
(U24217) Kluyveromyces lactis RNA polymerase II largest subu...   100   4e-16  1
(CR382126) Kluyveromyces lactis strain NRRL Y-1140 chromosom...   100   4e-16  1
(DQ294604) Scutellospora heterogama isolate AFTOL-ID 138 RNA...    68   7e-16  4
(DQ294600) Boothiomyces macroporosum isolate AFTOL-ID 689 RN...    74   3e-15  3
(AG207307) Oryza sativa Japonica Group DNA, clone:ND7066_0_1...    62   9e-15  5
(AB097420) Cokeromyces recurvatus RPB1 gene for DNA-dependen...    60   9e-15  5
(BP128128) Bombyx mori cDNA, clone:tesV0355, 5' end sequence.      72   1e-14  2
(DE170046) Bombyx mori genomic DNA, Fosmid clone:RO0318-G15_F.     72   1e-14  2
(CU317224) Flanking Sequence Tags of the ty1 copia retrotran...    62   1e-14  5
(CK855219) SWWbL3CAW36H04SK Wuchereria bancrofti L3 cDNA (SA...    62   2e-14  2
(EJ133355) 1092343578128 Global-Ocean-Sampling_GS-27-01-01-1...    94   2e-14  1
(EY381512) CAXA3510.fwd CAXA Helobdella robusta Subtracted L...    94   2e-14  1
(EY343086) CAWZ12289.fwd CAWZ Helobdella robusta Primary Lat...    94   2e-14  1
(AF519535) Cycas revoluta RNA polymerase II largest subunit ...    66   3e-14  4
(EU699882) Meloidogyne hapla clone Mh.10 RNA polymerase II l...    76   4e-14  2
(EU699881) Meloidogyne hapla clone Mh.2.2 RNA polymerase II ...    76   4e-14  2
(EU699880) Meloidogyne hapla clone Mh.3 RNA polymerase II la...    76   4e-14  2
(EU699879) Meloidogyne hapla clone Mh33.3.7 RNA polymerase I...    76   4e-14  2
(EU699878) Meloidogyne hapla clone Mh33.5 RNA polymerase II ...    76   4e-14  2
(EU699876) Meloidogyne hapla clone Mh.1 RNA polymerase II la...    76   4e-14  2
(DQ294611) Neocallimastix sp. GE13 isolate AFTOL-ID 638 RNA ...    64   6e-14  4
(DY890487) CeleSEQ9508 Cunninghamella elegans pBluescript (E...    76   7e-14  3
(CZ541390) SRAA-aad37g04.b1 Strongyloides ratti whole genome...    92   9e-14  1
(CU315962) Flanking Sequence Tags of the ty1 copia retrotran...    62   1e-13  5
(CX634631) taj53a02.y3 Hydra EST UCI 5 Hydra magnipapillata ...    74   2e-13  2
(AF241055) Astrobunus grallator RNA polymerase II largest su...    64   2e-13  2
(FG135541) AGN_ELP010xo03f1.ab1 AGN_ELP Nicotiana tabacum cD...    66   2e-13  3
(EF014394) Neocallimastix frontalis RNA polymerase II larges...    64   2e-13  4
(AL400803) T3 end of clone AS0AA023H06 of library AS0AA from...    72   3e-13  3
(EU184732) Apis dorsata RNA polymerase II (polII) gene, part...    82   4e-13  2
(U73456) Teratorhabditis palmarum large subunit RNA polymera...    58   6e-13  2
(BZ301870) KD1522.p1 Kluyveromyces delphensis Random Genomic...    80   1e-12  3
(EU184731) Apis florea RNA polymerase II (polII) gene, parti...    74   1e-12  2
(EK183326) 1095458133423 Global-Ocean-Sampling_GS-31-01-01-1...    88   1e-12  1
(EY375253) CAXA15530.fwd CAXA Helobdella robusta Subtracted ...    88   1e-12  1
(EY374883) CAXA15329.fwd CAXA Helobdella robusta Subtracted ...    88   1e-12  1
(AL397801) T3 end of clone AS0AA005C03 of library AS0AA from...    72   2e-12  2
(AY490554) Ephedra viridis RNA polymerase II large subunit (...    72   2e-12  3
(BZ305346) KD3460.q1 Kluyveromyces delphensis Random Genomic...    80   5e-12  3
(AL394664) T3 end of clone AR0AA018F07 of library AR0AA from...    48   7e-12  5
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    76   8e-12  2
(AF241046) Stenochrus portoricensis RNA polymerase II larges...    76   8e-12  3
(AY945123) Hesperapis sp. Hesp940 RNA polymerase II gene, pa...    74   9e-12  3
(EX565641) AIAE-aaa13a04.b1 Ancylostoma_caninum_EST_Female_p...    54   9e-12  2
(EY460494) AIAG-aaa13a07.b1 Anclostoma_caninum_EST_L3_Normal...    54   9e-12  2
(EU699877) Meloidogyne hapla clone Mh.2 RNA polymerase II la...    68   9e-12  2
(AY305646) Peripatus sp. Per3 RNA polymerase II largest subu...    50   9e-12  3
(EY459399) AIAG-aaa12h10.b1 Anclostoma_caninum_EST_L3_Normal...    54   9e-12  2
(AF241024) Parasitid 'Pas' RNA polymerase II largest subunit...    70   1e-11  2
(EF014373) Issatchenkia orientalis RNA polymerase II largest...    54   1e-11  6
(CZ033982) OM__Ba0011J05.f OM__Ba Oryza minuta genomic clone...    68   2e-11  4
(EY376923) CAXA1644.fwd CAXA Helobdella robusta Subtracted L...    84   2e-11  1
(DQ069327) Macronomia aureozonata RNA polymerase II large su...    64   3e-11  3
(EA377309) Sequence 26132 from patent US 7314974.                  78   3e-11  2
(AY310198) Glomeridesmus trinidadensis voucher Gtri RNA poly...    78   4e-11  2
(X56564) S. pombe rpb1 gene for the largest subunit of RNA p...    78   4e-11  2

>(AF058710) Dictyostelium discoideum RNA polymerase II largest subunit
            (RPB1) gene, partial cds.
          Length = 2271

 Score = 1673 bits (844), Expect = 0.0
 Identities = 875/887 (98%)
 Strand = Plus / Plus


Query: 678  ccgtgctgaagtcattgaaattatgatggtaccacgtcaaatcgtttcaccacaatcaaa 737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 ccgtgctgaagtcattgaaattatgatggtaccacgtcaaatcgtttcaccacaatcaaa 1343


Query: 738  tcgtcctgtaatgggtattgtacaagatactctattgggtagtcgtctctttacaaaacg 797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 tcgtcctgtaatgggtattgtacaagatactctattgggtagtcgtctctttacaaaacg 1403


Query: 798  tgattgctttatggaaaaagatttagtaatgaacatattaatgtggttaccatcttggga 857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 tgattgctttatggaaaaagatttagtaatgaacatattaatgtggttaccatcttggga 1463


Query: 858  tggtaaagtaccaccaccagcaatcttaaaaccaaaacaactttggacaggtaaacaact 917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 tggtaaagtaccaccaccagcaatcttaaaaccaaaacaactttggacaggtaaacaact 1523


Query: 918  tttctcactcatcattcccgatataaatttaattcgtttcacatcgactcacaatgataa 977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 tttctcactcatcattcccgatataaatttaattcgtttcacatcgactcacaatgataa 1583


Query: 978  agaaccaaatggatgttcggccggtgatactcgtgtcatcattgaaagaggtgaactatt 1037
              ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1584 gaaaccaaatgaatgttcggccggtgatactcgtgtcatcattgaaagaagtgaactatt 1643


Query: 1038 ggcaggtattctttgtaaacgttcattaggtgcagcaaatggttcaatcattcatgtggt 1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 ggcaggtattctttgtaaacgttcattaggtgcagcaaatggttcaatcattcatgtggt 1703


Query: 1098 catgaatgaacatggtcatgatacttgtcgtcttttcattgatcaaactcaaaccgttgt 1157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 catgaatgaacatggtcatgatacttgtcgtcttttcattgatcaaactcaaaccgttgt 1763


Query: 1158 caatcattggttaattaatcgtggtttcactatgggtattggtgataccattgcagattc 1217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 caatcattggttaattaatcgtggtttcactatgggtattggtgataccattgcagattc 1823


Query: 1218 tgcaacaatggcaaaggttactcttaccatttcctctgcaaagaatcaagtaaaagaatt 1277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 tgcaacaatggcaaaggttactcttaccatttcctctgcaaagaatcaagtaaaagaatt 1883


Query: 1278 gattatcaaagctcaaaataaacaatttgaatgtcaaccaggtaaatctgtaattgaaac 1337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 gattatcaaagctcaaaataaacaatttgaatgtcaaccaggtaaatctgtaattgaaac 1943


Query: 1338 ttttgaacaaaaagtaaatcaagtattaaataaggctcgtgataccgctggtagtagtgc 1397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 ttttgaacaaaaagtaaatcaagtattaaataaggctcgtgataccgctggtagtagtgc 2003


Query: 1398 acaagattccctntttgaggataacaatttaaaggngatggtaactgcaggttcaaaagg 1457
            |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2004 acaagattccctctctgaggataacaatttaaaggcgatggtaactgcaggttcaaaagg 2063


Query: 1458 ttntttcatcaatatttcacagatgatggnttgtgtaggtcaacaaaatgtngaaggtaa 1517
            || |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 2064 ttctttcatcaatatctcacagatgatggcttgtgtaggtcaacaaaatgtcgaaggtaa 2123


Query: 1518 acgtattccatttggtttccaaagtagaacattaccacacttcacca 1564
            ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2124 acgtattccatttggtttccaaagtagaacattaccacatttcacca 2170

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,915,894,131
Number of extensions: 113614678
Number of successful extensions: 11315405
Number of sequences better than 10.0: 919
Length of query: 1920
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1896
Effective length of database: 97,308,875,965
Effective search space: 184497628829640
Effective search space used: 184497628829640
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U11764-1 (Contig-U11764-1Q) /CSM_Contig/Contig-U11764-1Q.Seq.d
         (1920 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF058710_1(AF058710|pid:none) Dictyostelium discoideum RNA polym...   576   e-163
AF519541_1(AF519541|pid:none) Amborella trichopoda RNA polymeras...   401   e-110
DQ294611_1(DQ294611|pid:none) Neocallimastix sp. GE13 isolate AF...   400   e-110
DQ223185_1(DQ223185|pid:none) Glaucocystis nostochinearum strain...   399   e-109
EU543186_1(EU543186|pid:none) Illicium parviflorum RNA polymeras...   399   e-109
AY490552_1(AY490552|pid:none) Podocarpus macrophyllus RNA polyme...   398   e-109
EU543184_1(EU543184|pid:none) Ceratophyllum demersum RNA polymer...   398   e-109
AF519539_1(AF519539|pid:none) Magnolia x soulangeana RNA polymer...   398   e-109
EU543188_1(EU543188|pid:none) Nicotiana tabacum RNA polymerase I...   397   e-109
AF519540_1(AF519540|pid:none) Nymphaea odorata RNA polymerase II...   397   e-108
AF519542_1(AF519542|pid:none) Psilotum nudum RNA polymerase II l...   396   e-108
DQ020643_1(DQ020643|pid:none) Antirrhinum majus RNA polymerase I...   396   e-108
AF519538_1(AF519538|pid:none) Zea mays RNA polymerase II largest...   395   e-108
EU543183_1(EU543183|pid:none) Beta vulgaris RNA polymerase II la...   395   e-108
X52494_1(X52494|pid:none) Arabidopsis thaliana RPB1 gene for the...   395   e-108
JDMU1(T04690;S12071;S27346;S11960)DNA-directed RNA polymerase (E...   395   e-108
EU543192_1(EU543192|pid:none) Saruma henryi RNA polymerase II la...   394   e-108
AY490550_1(AY490550|pid:none) Thuja occidentalis RNA polymerase ...   393   e-107
X52954_1(X52954|pid:none) Arabidopsis thaliana rpII gene for RNA...   393   e-107
EU543189_1(EU543189|pid:none) Papaver orientale RNA polymerase I...   392   e-107
DQ020644_1(DQ020644|pid:none) Lycopersicon esculentum RNA polyme...   390   e-107
AY490551_1(AY490551|pid:none) Taxus canadensis RNA polymerase II...   390   e-106
AB097420_1(AB097420|pid:none) Cokeromyces recurvatus RPB1 gene f...   388   e-106
DQ294607_1(DQ294607|pid:none) Phycomyces blakesleeanus isolate A...   387   e-106
AB077098_1(AB077098|pid:none) Mucor mucedo RPB1 gene for DNA-dep...   387   e-106
AF519537_1(AF519537|pid:none) Welwitschia mirabilis RNA polymera...   387   e-105
DQ294595_1(DQ294595|pid:none) Mortierella verticillata isolate A...   386   e-105
U90210_1(U90210|pid:none) Spirogyra sp. RNA polymerase II larges...   385   e-105
AC084218_10(AC084218|pid:none) Oryza sativa (japonica cultivar-g...   384   e-105
AF519535_1(AF519535|pid:none) Cycas revoluta RNA polymerase II l...   384   e-105
AP008211_298(AP008211|pid:none) Oryza sativa (japonica cultivar-...   384   e-105
EU543182_1(EU543182|pid:none) Asparagus officinalis RNA polymera...   384   e-105
DQ294589_1(DQ294589|pid:none) Basidiobolus ranarum isolate AFTOL...   383   e-104
AY490554_1(AY490554|pid:none) Ephedra viridis RNA polymerase II ...   381   e-104
DQ294600_1(DQ294600|pid:none) Boothiomyces macroporosum isolate ...   377   e-103
AB097421_1(AB097421|pid:none) Umbelopsis ramanniana RPB1 gene fo...   377   e-103
DQ294580_1(DQ294580|pid:none) Physoderma maydis isolate AFTOL-ID...   377   e-103
DQ294608_1(DQ294608|pid:none) Monoblepharella sp. M15 isolate AF...   377   e-102
DQ294598_1(DQ294598|pid:none) Umbelopsis ramanniana isolate AFTO...   377   e-102
CP000590_138(CP000590|pid:none) Ostreococcus lucimarinus CCE9901...   374   e-102
DQ294606_1(DQ294606|pid:none) Orphella haysii isolate AFTOL-ID 1...   374   e-102
AF315822_1(AF315822|pid:none) Monoblepharis macrandra DNA-depend...   374   e-102
DQ294582_1(DQ294582|pid:none) Rozella allomycis isolate AFTOL-ID...   371   e-101
AM183921_1(AM183921|pid:none) Geosiphon pyriformis partial RPB1 ...   371   e-101
AB097419_1(AB097419|pid:none) Dimargaris cristalligena RPB1 gene...   370   e-101
AF315820_1(AF315820|pid:none) Glaucosphaera vacuolata DNA-depend...   370   e-100
DQ294592_1(DQ294592|pid:none) Glomus mosseae isolate AFTOL-ID 13...   369   e-100
AB097418_1(AB097418|pid:none) Dimargaris bacillispora RPB1 gene ...   369   e-100
DQ294588_1(DQ294588|pid:none) Dimargaris bacillispora isolate AF...   369   e-100
FJ387016_1(FJ387016|pid:none) Trichoplax adhaerens RNA polymeras...   365   4e-99
DQ294604_1(DQ294604|pid:none) Scutellospora heterogama isolate A...   364   7e-99
DQ294602_1(DQ294602|pid:none) Paraglomus occultum isolate AFTOL-...   362   2e-98
DQ294605_1(DQ294605|pid:none) Synchytrium macrosporum isolate AF...   362   2e-98
DQ294584_1(DQ294584|pid:none) Polychytrium aggregatum isolate AF...   362   2e-98
DQ294587_1(DQ294587|pid:none) Cladochytrium replicatum isolate A...   362   3e-98
DQ294585_1(DQ294585|pid:none) Hyaloraphidium curvatum isolate AF...   359   2e-97
DQ294591_1(DQ294591|pid:none) Conidiobolus coronatus isolate AFT...   358   4e-97
DQ294579_1(DQ294579|pid:none) Coelomomyces stegomyiae isolate AF...   358   5e-97
DQ294586_1(DQ294586|pid:none) Spizellomyces punctatus isolate AF...   357   9e-97
DQ294578_1(DQ294578|pid:none) Allomyces arbuscula isolate AFTOL-...   357   1e-96
U90037_1(U90037|pid:none) Limulus polyphemus RNA polymerase II l...   356   1e-96
I38186(I38186) RNA polymerase II largest subunit - human  &X7487...   354   7e-96
A28490(A28490;A23566) DNA-directed RNA polymerase (EC 2.7.7.6) I...   354   7e-96
(P24928) RecName: Full=DNA-directed RNA polymerase II subunit RP...   354   7e-96
U37500_1(U37500|pid:none) Mus musculus RNA polymerase II largest...   354   7e-96
(P08775) RecName: Full=DNA-directed RNA polymerase II subunit RP...   354   7e-96
D87293_1(D87293|pid:none) Cricetulus griseus mRNA for RNA polyme...   354   7e-96
AF139008_1(AF139008|pid:none) Speleonectes tulumensis RNA polyme...   353   1e-95
DQ206551_1(DQ206551|pid:none) Leucosolenia sp. AR-2003 isolate T...   353   2e-95
AY437917_1(AY437917|pid:none) Magnolia x soulangeana RNA polymer...   352   4e-95
U10331_1(U10331|pid:none) Artemia salina RNA polymerase II, larg...   352   4e-95
U90042_1(U90042|pid:none) Scutigera coleoptrata RNA polymerase I...   350   8e-95
A34092(A34092) DNA-directed RNA polymerase (EC 2.7.7.6) II large...   349   2e-94
(P35074) RecName: Full=DNA-directed RNA polymerase II subunit RP...   349   2e-94
AY437922_1(AY437922|pid:none) Zea mays RNA polymerase II largest...   348   5e-94
AF138973_1(AF138973|pid:none) Ctenolepisma lineata RNA polymeras...   347   9e-94
T43217(T43217) RNA polymerase (EC 2.7.7.-) II, largest chain - P...   347   9e-94
AF139013_1(AF139013|pid:none) Tanystylum orbiculare RNA polymera...   347   1e-93
T43026(T43026) probable DNA-directed RNA polymerase (EC 2.7.7.6)...   346   2e-93
DQ294581_1(DQ294581|pid:none) Rhizoclosmatium sp. JEL347-h isola...   346   2e-93
AF315819_1(AF315819|pid:none) Botryocladia uvarioides DNA-depend...   345   3e-93
DQ294596_1(DQ294596|pid:none) Rhopalomyces elegans isolate AFTOL...   345   3e-93
U90041_1(U90041|pid:none) Pedetontus saltator RNA polymerase II ...   344   8e-93
AB095187_1(AB095187|pid:none) Cyanidioschyzon merolae gene for D...   343   2e-92
AY437918_1(AY437918|pid:none) Ginkgo biloba RNA polymerase II la...   343   2e-92
AF240893_1(AF240893|pid:none) Abacion magnum RNA polymerase II l...   343   2e-92
AF395110_1(AF395110|pid:none) Naegleria gruberi RNA polymerase I...   342   3e-92
AF138971_1(AF138971|pid:none) Semibalanus balanoides RNA polymer...   342   4e-92
AF138996_1(AF138996|pid:none) Nebalia hessleri RNA polymerase II...   340   8e-92
AY305615_1(AY305615|pid:none) Scutigerella sp. Scu3 RNA polymera...   340   8e-92
Y18879_1(Y18879|pid:none) Drosophila pseudoobscura RpII215 gene.      339   2e-91
AB097417_1(AB097417|pid:none) Furculomyces boomerangus RPB1 gene...   339   2e-91
BT031343_1(BT031343|pid:none) Drosophila melanogaster RE30267 fu...   339   2e-91
DQ294590_1(DQ294590|pid:none) Entomophthora muscae isolate AFTOL...   338   4e-91
AY305591_1(AY305591|pid:none) Neogonodactylus oerstedii clone Ne...   338   5e-91
AY437916_1(AY437916|pid:none) Cycas revoluta RNA polymerase II l...   338   5e-91
DQ206522_1(DQ206522|pid:none) Suberites fuscus isolate TOA15 DNA...   337   1e-90
AY437920_1(AY437920|pid:none) Ephedra viridis RNA polymerase II ...   333   1e-89
AF240896_1(AF240896|pid:none) Bothropolys multidentatus RNA poly...   333   1e-89
(P36594) RecName: Full=DNA-directed RNA polymerase II subunit rp...   333   2e-89
EU276085_1(EU276085|pid:none) Chaetoceros muellerii RNA polymera...   332   3e-89
AB077095_1(AB077095|pid:none) Smittium culisetae RPB1 gene for D...   330   9e-89
U10334_1(U10334|pid:none) Crassostrea gigas RNA polymerase II la...   330   1e-88
AB097413_1(AB097413|pid:none) Kuzuhaea moniliformis RPB1 gene fo...   330   1e-88
FM992695_931(FM992695|pid:none) Candida dubliniensis CD36 chromo...   327   1e-87
DQ294594_1(DQ294594|pid:none) Coemansia reversa isolate AFTOL-ID...   326   2e-87
AB077093_1(AB077093|pid:none) Piptocephalis freseniana RPB1 gene...   325   5e-87
FN357485_10(FN357485|pid:none) Schistosoma mansoni genome sequen...   323   2e-86
CR382133_628(CR382133|pid:none) Debaryomyces hansenii chromosome...   323   2e-86
CR382129_619(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   321   5e-86
EF564005_1(EF564005|pid:none) Thalassiosira weissflogii RNA poly...   321   7e-86
AY305638_1(AY305638|pid:none) Macrobiotus islandicus clone MisAp...   316   2e-84
CR940352_164(CR940352|pid:none) Theileria annulata strain Ankara...   315   4e-84
DQ069329_1(DQ069329|pid:none) Pseudapis obesula RNA polymerase I...   313   1e-83
DQ069328_1(DQ069328|pid:none) Nomia tetrazonata RNA polymerase I...   313   1e-83
AY945120_1(AY945120|pid:none) Halictus rubicundus voucher Haru32...   313   1e-83
AY945130_1(AY945130|pid:none) Leioproctus fimbriatinus voucher L...   313   1e-83
AY945090_1(AY945090|pid:none) Anthophora montana voucher Anmo633...   313   1e-83
EF599271_1(EF599271|pid:none) Macropis fulvipes RNA polymerase 2...   313   1e-83
EF599284_1(EF599284|pid:none) Dasypoda spinigera RNA polymerase ...   313   1e-83
AY945187_1(AY945187|pid:none) Protandrena nanulus voucher Htnn63...   313   1e-83
AY945107_1(AY945107|pid:none) Colletes inaequalis voucher Coin45...   313   1e-83
EF599273_1(EF599273|pid:none) Hesperapis cockerelli RNA polymera...   313   1e-83
AY945207_1(AY945207|pid:none) Pseudopanurgus fraterculus voucher...   313   1e-83
AY945093_1(AY945093|pid:none) Anthidium oblongatum voucher Atob5...   313   1e-83
AY945150_1(AY945150|pid:none) Plenoculus sp. Plsp810 RNA polymer...   313   2e-83
AY945092_1(AY945092|pid:none) Andrena brooksi voucher Ansp643 RN...   313   2e-83
AY945096_1(AY945096|pid:none) Calliopsis anthidia voucher Caan59...   312   2e-83
AY305652_1(AY305652|pid:none) Thulinia stephaniae clone ThulApol...   312   2e-83
AY945124_1(AY945124|pid:none) Holcopasites ruthae voucher Horu51...   312   2e-83
AY860524_1(AY860524|pid:none) Lycoperdon pyriforme isolate AFTOL...   312   3e-83
AY305566_1(AY305566|pid:none) Harbansus paucichelatus clone Hapa...   312   3e-83
AY305604_1(AY305604|pid:none) Podura aquatica clone PaqApol RNA ...   311   4e-83
EU276086_1(EU276086|pid:none) Nitzschia communis RNA polymerase ...   311   4e-83
EF599266_1(EF599266|pid:none) Melitta dimidiata RNA polymerase 2...   311   5e-83
AY945140_1(AY945140|pid:none) Melitta capensis voucher Meca942 R...   311   5e-83
AY305547_1(AY305547|pid:none) Artemia salina clone Asa2Apol RNA ...   311   5e-83
EF599268_1(EF599268|pid:none) Melitta tricincta RNA polymerase 2...   311   5e-83
AY945111_1(AY945111|pid:none) Ctenoplectra albolimbata voucher C...   311   5e-83
AY945142_1(AY945142|pid:none) Melitta leporina voucher Mele981 R...   311   5e-83
AY945141_1(AY945141|pid:none) Melitta eickworti voucher Meew508 ...   311   7e-83
AY945158_1(AY945158|pid:none) Rophites algirus voucher Roal968 R...   311   7e-83
EU276084_1(EU276084|pid:none) Achnanthes minutissima RNA polymer...   311   7e-83
FN392321_582(FN392321|pid:none) Pichia pastoris GS115 chromosome...   311   7e-83
AY305544_1(AY305544|pid:none) Argulus sp. Arg2 RNA polymerase II...   311   7e-83
AY305581_1(AY305581|pid:none) Lynceus sp. JCR-2003 RNA polymeras...   311   7e-83
AF241005_1(AF241005|pid:none) Hadrurus arizonensis RNA polymeras...   311   7e-83
AY945105_1(AY945105|pid:none) Callomelitta antipodes voucher Cma...   310   9e-83
EU677578_1(EU677578|pid:none) Sialis sp. ALW-2008 RNA polymerase...   310   9e-83
AF139016_1(AF139016|pid:none) Milnesium tardigradum RNA polymera...   310   9e-83
AY310218_1(AY310218|pid:none) Narceus americanus voucher Nam RNA...   310   1e-82
EU677584_1(EU677584|pid:none) Macrogyrus oblongus RNA polymerase...   310   2e-82
AY945116_1(AY945116|pid:none) Dufourea mulleri voucher Dumu233 R...   310   2e-82
AY305616_1(AY305616|pid:none) Skogsbergia lerneri clone SkleApol...   309   2e-82
EU677583_1(EU677583|pid:none) Dineutes sublineatus RNA polymeras...   309   3e-82
AY945114_1(AY945114|pid:none) Dasypoda visnaga voucher Davi977 R...   309   3e-82
AY945143_1(AY945143|pid:none) Megachile pugnata voucher Mepg595 ...   308   4e-82
EU677585_1(EU677585|pid:none) Amphizoa lecontei RNA polymerase I...   307   8e-82
DQ069335_1(DQ069335|pid:none) Lithurgus apicalis RNA polymerase ...   307   8e-82
AF395111_1(AF395111|pid:none) Ochromonas danica RNA polymerase I...   307   1e-81
AY305596_1(AY305596|pid:none) Nicoletia meinerti clone NmeApol R...   307   1e-81
AY860526_1(AY860526|pid:none) Marasmius alliaceus isolate AFTOL-...   307   1e-81
EU276082_1(EU276082|pid:none) Phaeodactylum tricornutum RNA poly...   306   1e-81
AF138990_1(AF138990|pid:none) Machiloides banksi RNA polymerase ...   306   1e-81
AF138984_1(AF138984|pid:none) Hutchinsoniella macracantha RNA po...   306   1e-81
EU677591_1(EU677591|pid:none) Bembidion umbratum RNA polymerase ...   306   2e-81
DQ069331_1(DQ069331|pid:none) Systropha glabriventris RNA polyme...   306   2e-81
EU677589_1(EU677589|pid:none) Bembidion transversale RNA polymer...   306   2e-81
EU677587_1(EU677587|pid:none) Asaphidion yukonense RNA polymeras...   306   2e-81
AY305619_1(AY305619|pid:none) Thereuonema sp. JCR-2003 RNA polym...   306   2e-81
EF599269_1(EF599269|pid:none) Melitta haemorrhoidalis RNA polyme...   305   3e-81
AF139011_1(AF139011|pid:none) Tomocerus sp. 'Tom' RNA polymerase...   305   4e-81
AF315823_1(AF315823|pid:none) Stylonychia mytilus DNA-dependent ...   304   7e-81
AY305589_1(AY305589|pid:none) Mesocyclops edax clone MesoApol RN...   303   1e-80
AE017345_374(AE017345|pid:none) Cryptococcus neoformans var. neo...   303   1e-80
CP000883_120(CP000883|pid:none) Hemiselmis andersenii chromosome...   303   1e-80
AB077099_1(AB077099|pid:none) Monoblepharella sp. C-4 RPB1 gene ...   303   2e-80
AF138978_1(AF138978|pid:none) Eumesocampa frigilis RNA polymeras...   302   3e-80
AY305550_1(AY305550|pid:none) Chthamalus fragilis clone CfrApol ...   302   3e-80
EU677592_1(EU677592|pid:none) Bembidion mandibulare RNA polymera...   302   3e-80
AY305541_1(AY305541|pid:none) Allopauropus proximus clone AprApo...   302   3e-80
AY305559_1(AY305559|pid:none) Eurypauropus spinosus clone EuryAp...   302   3e-80
EU184721_1(EU184721|pid:none) Euglossa imperialis RNA polymerase...   301   4e-80
AY864870_1(AY864870|pid:none) Fomitiporia mediterranea isolate A...   301   4e-80
AY305569_1(AY305569|pid:none) Lepas anserifera clone LeanApol RN...   301   4e-80
AY857979_1(AY857979|pid:none) Calostoma cinnabarinum isolate AFT...   301   6e-80
AY485639_1(AY485639|pid:none) Amanita phalloides DNA-dependent R...   301   7e-80
AY305572_1(AY305572|pid:none) Libinia emarginata clone LemApol R...   299   3e-79
DQ912355_1(DQ912355|pid:none) Lecidea fuscoatra isolate AFTOL-ID...   298   4e-79
EU677595_1(EU677595|pid:none) Bembidion inaequale RNA polymerase...   298   4e-79
FJ772242_1(FJ772242|pid:none) Opegrapha varia strain AFTOL881 RN...   298   5e-79
DQ840558_1(DQ840558|pid:none) Pyrenula pseudobufonia isolate AFT...   297   8e-79
AY168016_1(AY168016|pid:none) Gregarina niphandrodes DNA-depende...   296   1e-78
DQ986850_1(DQ986850|pid:none) Aspicilia cinerea isolate AFTOL 64...   296   2e-78
FJ358416_1(FJ358416|pid:none) Xeromyces bisporus isolate CBS 236...   296   2e-78
DQ782831_1(DQ782831|pid:none) Umbilicaria mammulata isolate AFTO...   296   2e-78
DQ986829_2(DQ986829|pid:none) Porpidia speirea isolate AFTOL 105...   295   4e-78
DQ986831_1(DQ986831|pid:none) Psora rubiformis isolate AFTOL 219...   295   5e-78
DQ782854_1(DQ782854|pid:none) Hypocenomyce scalaris isolate AFTO...   295   5e-78
AM269986_4(AM269986|pid:none) Aspergillus niger contig An01c0390...   294   7e-78
DQ782829_1(DQ782829|pid:none) Lecanora hybocarpa isolate AFTOL-I...   293   2e-77
AY305577_1(AY305577|pid:none) Loxothylacus texanus clone LoxApol...   293   2e-77
DQ782825_1(DQ782825|pid:none) Roccella fuciformis isolate AFTOL-...   293   2e-77
FJ358405_1(FJ358405|pid:none) Arachnomyces glareosus isolate CBS...   292   3e-77
DQ973053_1(DQ973053|pid:none) Asahinea scholanderi isolate AFTOL...   292   3e-77
DQ782828_1(DQ782828|pid:none) Pertusaria dactylina isolate AFTOL...   291   4e-77
FJ358409_1(FJ358409|pid:none) Chromocleista malachitea isolate C...   291   4e-77
DQ973052_1(DQ973052|pid:none) Ophioparma lapponica isolate AFTOL...   291   6e-77
EF689770_1(EF689770|pid:none) Placocarpus schaereri isolate AFTO...   291   6e-77
DQ973049_1(DQ973049|pid:none) Myelochroa aurulenta isolate AFTOL...   291   6e-77
EF689800_1(EF689800|pid:none) Verrucaria lecideoides isolate AFT...   291   6e-77
DQ912363_1(DQ912363|pid:none) Platismatia glauca isolate AFTOL-I...   291   8e-77
FJ358404_1(FJ358404|pid:none) Arachniotus littoralis isolate CBS...   290   1e-76
S14183(S14183) DNA-directed RNA polymerase (EC 2.7.7.6) largest ...   290   2e-76
DQ973061_1(DQ973061|pid:none) Nephroma parile isolate AFTOL-ID 1...   290   2e-76
EF689821_1(EF689821|pid:none) Verrucula inconnexaria isolate AFT...   290   2e-76
DQ782819_1(DQ782819|pid:none) Simonyella variegata isolate AFTOL...   290   2e-76
FJ358367_1(FJ358367|pid:none) Cladophialophora minourae isolate ...   289   2e-76
DQ912356_1(DQ912356|pid:none) Cetraria islandica isolate AFTOL-I...   289   2e-76
FJ358411_1(FJ358411|pid:none) Gymnoascus reesii isolate CBS 259....   289   2e-76
DQ912359_1(DQ912359|pid:none) Hypotrachyna degelii isolate AFTOL...   289   2e-76
DQ883778_1(DQ883778|pid:none) Flavoparmelia caperata isolate AFT...   289   3e-76
EF689805_1(EF689805|pid:none) Verrucaria muralis isolate AFTOL-I...   289   3e-76
DQ782817_1(DQ782817|pid:none) Canoparmelia caroliniana isolate A...   289   3e-76
DQ912354_1(DQ912354|pid:none) Candelariella reflexa isolate AFTO...   289   3e-76
EF689795_1(EF689795|pid:none) Verrucaria fuscella isolate AFTOL-...   288   4e-76
FJ358407_1(FJ358407|pid:none) Ascosphaera colubrina isolate CBS ...   288   4e-76
DQ973056_1(DQ973056|pid:none) Buellia dialyta isolate AFTOL-ID 5...   288   4e-76
DQ782860_1(DQ782860|pid:none) Acarospora laqueata isolate AFTOL-...   288   5e-76
EF689747_1(EF689747|pid:none) Catapyrenium cinereum isolate AFTO...   288   5e-76
EF689749_1(EF689749|pid:none) Clavascidium umbrinum isolate AFTO...   288   5e-76
EF689804_1(EF689804|pid:none) Verrucaria mucosa isolate AFTOL-ID...   288   5e-76
CR382126_220(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   288   5e-76
EF689796_1(EF689796|pid:none) Verrucaria hochstetteri isolate AF...   288   5e-76
DQ912358_1(DQ912358|pid:none) Hypotrachyna caraccensis isolate A...   288   5e-76
DQ782853_1(DQ782853|pid:none) Agonimia sp. AFTOL 684 RNA polymer...   288   5e-76
DQ782858_1(DQ782858|pid:none) Pleopsidium chlorophanum isolate A...   288   6e-76
(P04050) RecName: Full=DNA-directed RNA polymerase II subunit RP...   288   6e-76
DQ782827_1(DQ782827|pid:none) Mycoblastus sanguinarius isolate A...   288   6e-76
EF689820_1(EF689820|pid:none) Verrucula inconnexaria isolate AFT...   288   6e-76
EF413602_1(EF413602|pid:none) Polyblastia melaspora isolate AFTO...   288   6e-76
EF689817_1(EF689817|pid:none) Verrucula granulosaria isolate AFT...   287   8e-76
EF689815_1(EF689815|pid:none) Verrucula biatorinaria isolate AFT...   287   8e-76
EF689776_1(EF689776|pid:none) Endocarpon diffractellum isolate A...   287   8e-76
EF689780_1(EF689780|pid:none) Staurothele immersa isolate AFTOL-...   287   1e-75
DQ883739_1(DQ883739|pid:none) Lobariella pallida isolate AFTOL-I...   287   1e-75
EF689756_1(EF689756|pid:none) Endocarpon pusillum isolate AFTOL-...   287   1e-75
EF689775_1(EF689775|pid:none) Staurothele areolata isolate AFTOL...   287   1e-75
EF689792_1(EF689792|pid:none) Verrucaroa dolosa isolate AFTOL-ID...   287   1e-75
EF689772_1(EF689772|pid:none) Placopyrenium bucekii isolate AFTO...   287   1e-75
EF689798_1(EF689798|pid:none) Verrucaria hydrela isolate AFTOL-I...   286   1e-75
EF689744_1(EF689744|pid:none) Bagliettoa baldensis isolate AFTOL...   286   1e-75
DQ840552_1(DQ840552|pid:none) Endocarpon pallidulum isolate AFTO...   286   1e-75
EF689755_1(EF689755|pid:none) Endocarpon psorodeum isolate AFTOL...   286   1e-75
EF689783_1(EF689783|pid:none) Thelidium incavatum isolate AFTOL-...   286   1e-75
EF689765_1(EF689765|pid:none) Placidium lacinulatum isolate AFTO...   286   2e-75
EF689784_1(EF689784|pid:none) Thelidium papulare isolate AFTOL-I...   286   2e-75
DQ883741_1(DQ883741|pid:none) Heterodermia vulgaris isolate AFTO...   286   2e-75
EF689807_1(EF689807|pid:none) Verrucaria polysticta isolate AFTO...   286   2e-75
EF689761_1(EF689761|pid:none) Placidiopsis cinerascens isolate A...   286   2e-75
DQ912375_1(DQ912375|pid:none) Protopannaria pezizoides isolate A...   286   2e-75
EF689751_1(EF689751|pid:none) Dermatocarpon luridum isolate AFTO...   286   2e-75
EF689759_1(EF689759|pid:none) Neocatapyrenium rhizinosum isolate...   286   2e-75
DQ883744_1(DQ883744|pid:none) Anaptychia palmatula isolate AFTOL...   286   2e-75
DQ883737_1(DQ883737|pid:none) Pseudocyphellaria anomala isolate ...   285   3e-75
AM284979_1(AM284979|pid:none) Glomus proliferum partial RPB1 gen...   285   4e-75
EF689769_1(EF689769|pid:none) Placidium sp. isolate AFTOL-ID 223...   285   4e-75
EF689781_1(EF689781|pid:none) Thelidium decipiens isolate AFTOL-...   285   4e-75
EF689787_1(EF689787|pid:none) Verrucaria canella isolate AFTOL-I...   285   4e-75
FJ358413_1(FJ358413|pid:none) Leucothecium emdenii isolate CBS 5...   285   4e-75
EF689753_1(EF689753|pid:none) Endocarpon adscendens isolate AFTO...   285   4e-75
DQ973050_1(DQ973050|pid:none) Cetradonia sp. AFTOL 1657 RNA poly...   285   5e-75
EF689768_1(EF689768|pid:none) Placidium squamulosum isolate AFTO...   285   5e-75
DQ840557_1(DQ840557|pid:none) Ramichloridium anceps isolate AFTO...   285   5e-75
EF689813_1(EF689813|pid:none) Verrucaria tristis isolate AFTOL-I...   284   7e-75
CU928180_82(CU928180|pid:none) Kluyveromyces thermotolerans stra...   284   7e-75
EF689782_1(EF689782|pid:none) Thelidium decipiens isolate AFTOL-...   284   7e-75
EF689812_1(EF689812|pid:none) Verrucaria weddellii isolate AFTOL...   284   9e-75
EF413605_1(EF413605|pid:none) Capronia munkii isolate AFTOL-ID 6...   284   9e-75
EF689771_1(EF689771|pid:none) Placopyrenium bucekii1 isolate AFT...   284   9e-75
EF689793_1(EF689793|pid:none) Verrucaria dufourii isolate AFTOL-...   284   9e-75
EF689754_1(EF689754|pid:none) Endocarpon petrolepideum isolate A...   284   9e-75
CR380955_154(CR380955|pid:none) Candida glabrata strain CBS138 c...   284   9e-75
FJ358360_1(FJ358360|pid:none) Capronia sp. WUC 26 RNA polymerase...   284   9e-75
EF689758_1(EF689758|pid:none) Heteroplacidium imbricatum isolate...   283   1e-74
EF689809_1(EF689809|pid:none) Bagliettoa steineri isolate AFTOL-...   283   2e-74
DQ782820_1(DQ782820|pid:none) Physcia aipolia isolate AFTOL-ID 8...   283   2e-74
DQ973059_1(DQ973059|pid:none) Ramalina complanata isolate AFTOL-...   283   2e-74
AM284975_1(AM284975|pid:none) Glomus mosseae partial RPB1 gene f...   283   2e-74
DQ167784_1(DQ167784|pid:none) Drosophila simulans putative RNA p...   282   3e-74
DQ167786_1(DQ167786|pid:none) Drosophila yakuba putative RNA pol...   282   3e-74
DQ334105_1(DQ334105|pid:none) Drosophila miranda CG1554 gene, pa...   282   3e-74
FJ358363_1(FJ358363|pid:none) Capronia sp. WUC 315 RNA polymeras...   282   3e-74
EF689803_1(EF689803|pid:none) Verrucaria maura isolate AFTOL-ID ...   282   3e-74
FJ358361_1(FJ358361|pid:none) Capronia sp. WUC 102 RNA polymeras...   282   3e-74
FJ358410_1(FJ358410|pid:none) Eremascus albus isolate CBS 975.69...   282   4e-74
FJ358358_1(FJ358358|pid:none) Capronia semiimmersa isolate AFTOL...   282   4e-74
DQ912369_1(DQ912369|pid:none) Phaeophyscia orbicularis isolate A...   281   5e-74
DQ883745_1(DQ883745|pid:none) Pyxine subcinerea isolate AFTOL-ID...   281   5e-74
DQ840555_1(DQ840555|pid:none) Exophiala dermatitidis isolate AFT...   281   6e-74
DQ782857_1(DQ782857|pid:none) Lichinella iodopulchra isolate AFT...   281   6e-74
FJ358400_1(FJ358400|pid:none) Chaetothyriales sp. TRN531 RNA pol...   281   8e-74
EF413613_2(EF413613|pid:none) Spiromastix warcupii RNA polymeras...   280   1e-73
FJ772241_1(FJ772241|pid:none) Arthonia caesia strain AFTOL775 RN...   280   1e-73
AF138977_1(AF138977|pid:none) Eurytemora affinis RNA polymerase ...   280   1e-73
FJ358366_1(FJ358366|pid:none) Cladophialophora carrionii isolate...   280   1e-73
DQ912374_1(DQ912374|pid:none) Degelia plumbea isolate AFTOL-ID 1...   279   2e-73
DQ996231_1(DQ996231|pid:none) Nosema bombycis RNA polymerase II ...   279   2e-73
FJ358392_1(FJ358392|pid:none) Chaetothyriales sp. TRN475 RNA pol...   279   3e-73
FJ358397_1(FJ358397|pid:none) Chaetothyriales sp. TRN506 RNA pol...   278   4e-73
DQ996234_1(DQ996234|pid:none) Nosema trichoplusiae RNA polymeras...   278   5e-73
FJ358377_1(FJ358377|pid:none) Exophiala xenobiotica isolate CBS ...   278   5e-73
AY305590_1(AY305590|pid:none) Mesocyclops edax clone MesoBpol RN...   278   7e-73
DQ912364_1(DQ912364|pid:none) Punctelia hypoleucites isolate AFT...   278   7e-73
AB077091_1(AB077091|pid:none) Emericella nidulans RPB1 gene for ...   277   1e-72
AF240892_1(AF240892|pid:none) Peripatus sp. 'Per2' RNA polymeras...   276   1e-72
FJ358398_1(FJ358398|pid:none) Chaetothyriales sp. TRN508 RNA pol...   276   2e-72
(Q8SSC4) RecName: Full=DNA-directed RNA polymerase II subunit RP...   275   3e-72
FJ358388_1(FJ358388|pid:none) Chaetothyriales sp. TRN210 RNA pol...   275   4e-72
FJ358364_1(FJ358364|pid:none) Ceramothyrium carniolicum isolate ...   275   6e-72
EF413629_1(EF413629|pid:none) Ceramothyrium carniolicum RNA poly...   275   6e-72
DQ996235_1(DQ996235|pid:none) Vairimorpha cheracis RNA polymeras...   274   7e-72
FJ358394_1(FJ358394|pid:none) Chaetothyriales sp. TRN488 RNA pol...   273   1e-71
AM284981_1(AM284981|pid:none) Glomus proliferum partial RPB1 gen...   273   2e-71
DQ996233_1(DQ996233|pid:none) Nosema granulosis RNA polymerase I...   272   4e-71
AM284974_1(AM284974|pid:none) Glomus intraradices partial RPB1 g...   272   4e-71
DQ973068_1(DQ973068|pid:none) Xanthoria elegans isolate AFTOL-ID...   271   5e-71
FJ358380_1(FJ358380|pid:none) Phialophora europaea isolate CBS 1...   270   1e-70
AM284980_1(AM284980|pid:none) Glomus proliferum partial RPB1 gen...   270   1e-70
(A5DCV3) RecName: Full=DNA-directed RNA polymerase II subunit RP...   269   3e-70
DQ883743_1(DQ883743|pid:none) Coccocarpia erythroxyli isolate AF...   268   5e-70
U73451_1(U73451|pid:none) Cruznema tripartitum large subunit RNA...   268   7e-70
EU153438_1(EU153438|pid:none) Rhabditoid sp. PDL15 RNA polymeras...   266   2e-69
AY602189_1(AY602189|pid:none) Caenorhabditis sp. DF5070 RNA poly...   265   3e-69
AY601774_1(AY601774|pid:none) Caenorhabditis sp. PS1010 RNA poly...   265   3e-69
EU153411_1(EU153411|pid:none) Rhabditis brassicae strain SB193 R...   265   4e-69
EU153416_1(EU153416|pid:none) Pellioditis sp. JU274 RNA polymera...   264   8e-69
EU153422_1(EU153422|pid:none) Pelodera teres strain EM437 RNA po...   264   1e-68
EU153410_1(EU153410|pid:none) Pellioditis typica strain DF5025 R...   264   1e-68
EU153423_1(EU153423|pid:none) Rhabditoides regina strain DF5012 ...   264   1e-68
EU153420_1(EU153420|pid:none) Pelodera strongyloides dermatitica...   263   1e-68
EU153426_1(EU153426|pid:none) Pristionchus pacificus strain PS31...   263   2e-68
EU153424_1(EU153424|pid:none) Rhabditoides inermiformis strain S...   263   2e-68
EU161971_1(EU161971|pid:none) Rhabditoides inermiformis strain S...   262   3e-68
EU153415_1(EU153415|pid:none) Oscheius dolichura strain JU460 RN...   262   3e-68
EU153421_1(EU153421|pid:none) Pelodera punctata strain SB160 RNA...   262   3e-68
AY602183_1(AY602183|pid:none) Rhabditella axei RNA polymerase 2 ...   261   5e-68
AY602187_1(AY602187|pid:none) Caenorhabditis sp. SB341 RNA polym...   261   6e-68
AY945095_1(AY945095|pid:none) Bembix americana voucher Bxam811 R...   261   6e-68
EU153431_1(EU153431|pid:none) Oscheius dolichuroides strain DF50...   261   8e-68
AY601771_1(AY601771|pid:none) Caenorhabditis remanei strain SB14...   261   8e-68
EU153427_1(EU153427|pid:none) Pelodera pseudoteres strain SB116 ...   261   8e-68
AY945189_1(AY945189|pid:none) Hypotrigona gribodoi voucher Hygr1...   261   8e-68
EU161975_2(EU161975|pid:none) Pelodera punctata strain SB160 RNA...   260   1e-67
AY945197_1(AY945197|pid:none) Macrotera latior voucher Pdla224 R...   260   1e-67
AY604469_1(AY604469|pid:none) Prodontorhabditis wirthi strain DF...   259   2e-67
EU153430_1(EU153430|pid:none) Oscheius tipulae strain CEW1 RNA p...   259   2e-67
EU153414_1(EU153414|pid:none) Oscheius tipulae strain CEW1 RNA p...   259   2e-67
EU153441_1(EU153441|pid:none) Acrobeles maximus RNA polymerase 2...   259   2e-67
EU153439_1(EU153439|pid:none) Poikilolaimus regenfussi strain SB...   259   3e-67
A31494(A31494)DNA-directed RNA polymerase (EC 2.7.7.6) IIA - Try...   259   3e-67
B31494(B31494)DNA-directed RNA polymerase (EC 2.7.7.6) IIB - Try...   259   3e-67
(P17546) RecName: Full=DNA-directed RNA polymerase II subunit RP...   259   3e-67
J04841_1(J04841|pid:none) T.brucei RNA polymerase IIB largest su...   259   3e-67
EU153417_1(EU153417|pid:none) Pellioditis mediterranea strain DF...   258   4e-67
AY945128_1(AY945128|pid:none) Hylaeus proximus voucher Hypr699 R...   258   4e-67
DQ782823_1(DQ782823|pid:none) Echinoplaca strigulacea isolate AF...   258   5e-67
FJ358412_1(FJ358412|pid:none) Leiothecium ellipsoideum isolate C...   258   5e-67
EF031147_1(EF031147|pid:none) Paragordius varius RNA polymerase ...   257   1e-66
EU161972_1(EU161972|pid:none) Bunonema reticulatum strain PDL100...   256   2e-66
EU178799_1(EU178799|pid:none) Diploscapter sp. strain JU359 RNA ...   256   2e-66
EU161965_3(EU161965|pid:none) Choriorhabditis dudichi strain SB1...   256   2e-66
U73456_1(U73456|pid:none) Teratorhabditis palmarum large subunit...   256   3e-66
AF060234_1(AF060234|pid:none) Vairimorpha necatrix largest subun...   255   4e-66
DQ996236_1(DQ996236|pid:none) Vairimorpha necatrix RNA polymeras...   255   4e-66
AY137579_1(AY137579|pid:none) Trypanosoma cruzi TcPolIILSUB RNA ...   254   1e-65
AF372503_1(AF372503|pid:none) Trypanosoma cruzi TcPolIILSUA RNA ...   254   1e-65
EU153429_1(EU153429|pid:none) Rhabditis rainai strain PS1191 RNA...   253   2e-65
EU161966_2(EU161966|pid:none) Cruznema tripartitum strain SB202 ...   252   3e-65
EU153428_1(EU153428|pid:none) Rhabditis sp. SB347 RNA polymerase...   251   5e-65
AF126254_1(AF126254|pid:none) Leishmania donovani RNA polymerase...   249   2e-64
CT005268_264(CT005268|pid:none) Leishmania major strain Friedlin...   248   6e-64
AM494968_295(AM494968|pid:none) Leishmania braziliensis chromoso...   248   6e-64
AM502249_329(AM502249|pid:none) Leishmania infantum chromosome 31.    248   6e-64
EU161963_1(EU161963|pid:none) Rhabditoides inermis strain SB328 ...   247   1e-63
EU178800_4(EU178800|pid:none) Diploscapter sp. JU359 RNA polymer...   244   1e-62
EU161962_1(EU161962|pid:none) Oscheius insectivora strain SB169 ...   243   2e-62
EU161964_3(EU161964|pid:none) Pristionchus pacificus strain SB31...   242   3e-62
AF338253_1(AF338253|pid:none) Leptomonas seymouri RNA polymerase...   242   3e-62
EU161974_2(EU161974|pid:none) Rhabditoides regina strain DF5012 ...   242   4e-62
AF241046_1(AF241046|pid:none) Stenochrus portoricensis RNA polym...   239   3e-61
AY305575_1(AY305575|pid:none) Limnadia lenticularis clone LleApo...   237   1e-60
EU153409_1(EU153409|pid:none) Protorhabditis sp. JB122 RNA polym...   236   2e-60
AF138972_1(AF138972|pid:none) Semibalanus balanoides RNA polymer...   236   2e-60
AF139014_1(AF139014|pid:none) Tanystylum orbiculare RNA polymera...   235   5e-60
AK293777_1(AK293777|pid:none) Homo sapiens cDNA FLJ53860 complet...   234   1e-59
AF083338_1(AF083338|pid:none) Breviata anathema DNA-dependent RN...   233   2e-59
AF138988_1(AF138988|pid:none) Metajapyx subterraneus RNA polymer...   232   4e-59
AJ278949_1(AJ278949|pid:none) Cystosporogenes operophterae parti...   230   2e-58
DQ206524_1(DQ206524|pid:none) Suberites fuscus isolate TOA17 DNA...   228   8e-58
AY305585_1(AY305585|pid:none) Hexagenia limbata clone MayBpol RN...   225   4e-57
EU184734_1(EU184734|pid:none) Centris cockerelli RNA polymerase ...   223   3e-56
DQ782821_1(DQ782821|pid:none) Dermatocarpon miniatum isolate AFT...   222   4e-56
AY305649_1(AY305649|pid:none) Richtersius coronifer clone RcoBpo...   222   4e-56
AY305632_1(AY305632|pid:none) Echiniscus viridissimus clone EviB...   221   1e-55
AJ551181_1(AJ551181|pid:none) Brugia malayi partial ama-1 gene f...   219   4e-55
AY305624_1(AY305624|pid:none) Trachyiulus nordquisti clone TnorB...   217   1e-54
CR932237_1(CR932237|pid:none) DNA-directed RNA polymerase II lar...   217   1e-54
U90040_1(U90040|pid:none) Periplaneta americana RNA polymerase I...   216   2e-54
AF138982_1(AF138982|pid:none) Hanseniella sp. 'Han' RNA polymera...   215   4e-54
EU699878_1(EU699878|pid:none) Meloidogyne hapla clone Mh33.5 RNA...   212   3e-53
EU699858_1(EU699858|pid:none) Meloidogyne javanica clone Mj25.2 ...   211   8e-53
EU699854_1(EU699854|pid:none) Meloidogyne arenaria clone Ma10.4....   211   8e-53
EU699882_1(EU699882|pid:none) Meloidogyne hapla clone Mh.10 RNA ...   211   8e-53
EU699856_1(EU699856|pid:none) Meloidogyne javanica clone Mj24.4 ...   211   8e-53
EU699883_1(EU699883|pid:none) Meloidogyne chitwoodi clone Mc.4 R...   210   1e-52
EU699871_1(EU699871|pid:none) Meloidogyne mayaguensis clone Mm3....   210   1e-52
EU699881_1(EU699881|pid:none) Meloidogyne hapla clone Mh.2.2 RNA...   210   2e-52
AY305538_1(AY305538|pid:none) Anopsobius neozelandicus clone Ane...   209   2e-52
EU699876_1(EU699876|pid:none) Meloidogyne hapla clone Mh.1 RNA p...   209   3e-52
EU699862_1(EU699862|pid:none) Meloidogyne javanica clone Mj723.2...   208   6e-52
EU699861_1(EU699861|pid:none) Meloidogyne javanica clone Mj723.1...   207   8e-52
EU677596_1(EU677596|pid:none) Bembidion integrum RNA polymerase ...   207   8e-52
EU699877_1(EU699877|pid:none) Meloidogyne hapla clone Mh.2 RNA p...   207   1e-51
AJ278952_1(AJ278952|pid:none) Glugea anomala partial rpb1 gene f...   203   2e-50
AJ278951_1(AJ278951|pid:none) Loma acerinae partial rpb1 gene fo...   194   1e-47
AJ278956_1(AJ278956|pid:none) Vavraia culicis partial rpb1 gene ...   193   2e-47
AJ278945_1(AJ278945|pid:none) Trachipleistophora hominis partial...   188   5e-46
EU216799_1(EU216799|pid:none) Drosophila simulans strain MD63 RN...   184   1e-44
AJ278950_1(AJ278950|pid:none) Pleistophora hippoglossoideos part...   182   3e-44
AJ278946_1(AJ278946|pid:none) Pleistophora typicalis partial rpb...   182   3e-44
EF119338_1(EF119338|pid:none) Pleistophora mulleri RNA polymeras...   181   8e-44
AY310230_1(AY310230|pid:none) Siphonocybe sp. 'Siph' RNA polymer...   177   9e-43
AY305556_1(AY305556|pid:none) Colossendreis sp. Col RNA polymera...   177   9e-43
AY305574_1(AY305574|pid:none) Libinia emarginata clone LemCpol R...   177   9e-43
AF240906_1(AF240906|pid:none) Cylindroiulus punctatus RNA polyme...   177   2e-42
AF241055_1(AF241055|pid:none) Astrobunus grallator RNA polymeras...   177   2e-42
AF240898_1(AF240898|pid:none) Bothropolys multidentatus RNA poly...   177   2e-42
AY305595_1(AY305595|pid:none) Nebalia hessleri clone NheBpol RNA...   176   2e-42
AF240917_1(AF240917|pid:none) Hanseniella sp. 'Han' RNA polymera...   176   2e-42
AF138986_1(AF138986|pid:none) Hutchinsoniella macracantha RNA po...   176   2e-42
AF240945_1(AF240945|pid:none) Polyzonium germanicum RNA polymera...   176   3e-42
AF240883_1(AF240883|pid:none) Endeis laevis RNA polymerase II la...   176   4e-42
AY305571_1(AY305571|pid:none) Lepas anserifera clone LeanCpol RN...   176   4e-42
AF241021_1(AF241021|pid:none) Odiellus pictus RNA polymerase II ...   176   4e-42
AF240984_1(AF240984|pid:none) Carcinoscorpius rotundicauda RNA p...   176   4e-42
AF240948_1(AF240948|pid:none) Platydesmus sp. 'Pla' RNA polymera...   176   4e-42
AF240963_1(AF240963|pid:none) Striaria columbiana RNA polymerase...   176   4e-42
AF240903_1(AF240903|pid:none) Cleidogona major RNA polymerase II...   176   4e-42
AF240969_1(AF240969|pid:none) Symphylella sp. 'Sym' RNA polymera...   176   4e-42
AF139012_1(AF139012|pid:none) Tomocerus sp. 'Tom' RNA polymerase...   176   4e-42
AF241052_1(AF241052|pid:none) Zercon sp. 'Zer' RNA polymerase II...   175   5e-42
AF241027_1(AF241027|pid:none) Parasiro coiffaiti RNA polymerase ...   175   5e-42
AY310195_1(AY310195|pid:none) Docodesmus trinidadensis voucher D...   175   5e-42
AF240960_1(AF240960|pid:none) Scolopocryptops sexspinosus RNA po...   175   5e-42
AF240973_1(AF240973|pid:none) Aphonopelma chalcodes RNA polymera...   175   5e-42
AY305598_1(AY305598|pid:none) Nicoletia meinerti clone NmeCpol R...   175   5e-42
AY305554_1(AY305554|pid:none) Ctenolepisma lineata clone CliBpol...   175   5e-42
AF241024_1(AF241024|pid:none) Parasitid 'Pas' RNA polymerase II ...   175   5e-42
AF240923_1(AF240923|pid:none) Ophyiulus pilosus RNA polymerase I...   175   5e-42
AY310233_1(AY310233|pid:none) Stemmiulus insulanus voucher Stem ...   175   6e-42
AF139002_1(AF139002|pid:none) Polyxenus fasciculatus RNA polymer...   175   6e-42
AY305618_1(AY305618|pid:none) Skogsbergia lerneri clone SkleCpol...   175   6e-42
AY305610_1(AY305610|pid:none) Pedetontus saltator clone PsaApol ...   175   6e-42
AF240900_1(AF240900|pid:none) Cryptops hyalinus RNA polymerase I...   175   6e-42
AF240999_1(AF240999|pid:none) Dinothrombium pandorae RNA polymer...   175   6e-42
AF138992_1(AF138992|pid:none) Machiloides banksi RNA polymerase ...   175   6e-42
AF241049_1(AF241049|pid:none) Tachyuropodid 'Tac' RNA polymerase...   174   8e-42
AY310198_1(AY310198|pid:none) Glomeridesmus trinidadensis vouche...   174   8e-42
AF138995_1(AF138995|pid:none) Nipponopsalis abei RNA polymerase ...   174   8e-42
AF240886_1(AF240886|pid:none) Chaetopleura apiculata RNA polymer...   174   8e-42
AY305603_1(AY305603|pid:none) Periplaneta americana clone PamBpo...   174   8e-42
AF241039_1(AF241039|pid:none) Sejus sp. 'Sej' RNA polymerase II ...   174   8e-42
AY310201_1(AY310201|pid:none) Henicops maculatus voucher Hen RNA...   174   1e-41
AY305540_1(AY305540|pid:none) Anopsobius neozelandicus clone Ane...   174   1e-41
AF138999_1(AF138999|pid:none) Cypridopsis vidua RNA polymerase I...   174   1e-41
AF240914_1(AF240914|pid:none) Glomeris marginata RNA polymerase ...   174   1e-41
AF241009_1(AF241009|pid:none) Heterophrynus sp. 'Het' RNA polyme...   174   1e-41
AY305630_1(AY305630|pid:none) Streptocephalus seali clone ufsDpo...   173   2e-41
AY310217_1(AY310217|pid:none) Plesioproctus comans voucher Lop R...   173   2e-41
AY305583_1(AY305583|pid:none) Lynceus sp. JCR-2003 RNA polymeras...   173   2e-41
AF240979_1(AF240979|pid:none) Caeculus sp. 'Cae' RNA polymerase ...   173   2e-41
AY305601_1(AY305601|pid:none) Orchesella imitari clone OimCpol R...   173   2e-41
AF241044_1(AF241044|pid:none) Sclerobunus robustus RNA polymeras...   173   2e-41
AF240891_1(AF240891|pid:none) Nereis virens RNA polymerase II la...   173   2e-41
AY305543_1(AY305543|pid:none) Allopauropus proximus clone AprCpo...   173   2e-41
DQ083405_1(DQ083405|pid:none) Nosema sp. PX1 DNA-dependent RNA p...   173   2e-41
AF241103_1(AF241103|pid:none) Scotolemon lespesi RNA polymerase ...   172   3e-41
EU161967_1(EU161967|pid:none) Phasmarhabditis sp. EM434 RNA poly...   172   3e-41
AF241070_1(AF241070|pid:none) Equitius doriae RNA polymerase II ...   172   3e-41
FM992691_623(FM992691|pid:none) Candida dubliniensis CD36 chromo...   172   4e-41
AF240993_1(AF240993|pid:none) Chthonius tetrachelatus RNA polyme...   172   5e-41
AY305580_1(AY305580|pid:none) Loxothylacus texanus clone LoxDpol...   171   7e-41
DQ083406_1(DQ083406|pid:none) Nosema plutellae isolate PX2 DNA-d...   171   7e-41
EU161978_1(EU161978|pid:none) Cuticonema vivipara strain SB179 R...   171   9e-41
(Q9HM79) RecName: Full=DNA-directed RNA polymerase subunit A';  ...   171   1e-40
AE004437_2048(AE004437|pid:none) Halobacterium sp. NRC-1, comple...   171   1e-40
FN357492_16(FN357492|pid:none) Schistosoma mansoni genome sequen...   170   1e-40
X57144_4(X57144|pid:none) H. halobium RNA polymerase subunit ope...   170   1e-40
AF139005_1(AF139005|pid:none) Scutigerella sp. 'Scu2' RNA polyme...   170   2e-40

>AF058710_1(AF058710|pid:none) Dictyostelium discoideum RNA polymerase
            II largest subunit (RPB1) gene, partial cds.
          Length = 757

 Score =  576 bits (1485), Expect = e-163
 Identities = 288/295 (97%), Positives = 289/295 (97%)
 Frame = +1

Query: 679  RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWD 858
            RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWD
Sbjct: 429  RAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWD 488

Query: 859  GKVPPPAILKPKQLWTGKQLFSLIIPDINLIRFTSTHNDKEPNGCSAGDTRVIIERGELL 1038
            GKVPPPAILKPKQLWTGKQLFSLIIPDINLIRFTSTHNDK+PN CSAGDTRVIIER ELL
Sbjct: 489  GKVPPPAILKPKQLWTGKQLFSLIIPDINLIRFTSTHNDKKPNECSAGDTRVIIERSELL 548

Query: 1039 AGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADS 1218
            AGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADS
Sbjct: 549  AGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADS 608

Query: 1219 ATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSA 1398
            ATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSA
Sbjct: 609  ATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSA 668

Query: 1399 QDSLFEDNNLKXMVTAGSKGXFINISQMMXCVGQQNVEGKRIPFGFQSRTLPHFT 1563
            QDSL EDNNLK MVTAGSKG FINISQMM CVGQQNVEGKRIPFGFQSRTLPHFT
Sbjct: 669  QDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFT 723

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,761,313,502
Number of extensions: 53918204
Number of successful extensions: 131204
Number of sequences better than 10.0: 1511
Number of HSP's gapped: 129999
Number of HSP's successfully gapped: 1860
Length of query: 640
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 505
Effective length of database: 614,245,399
Effective search space: 310193926495
Effective search space used: 310193926495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.81  gvh: 0.53  alm: 0.22  top: 0.43  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: vesicles of secretory system
	 20.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U11764-1 is cyt