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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11762-1
Contig ID Contig-U11762-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11762-1 (Contig-U11762-1Q) /CSM_Contig/Contig-U11762-1Q.Seq.d
ATTTTTGAAATCAGTGGTTCAATCAATAAGAGCACCTAATCCTGAAAGTA
TTAATTTAACACCTACAAATATTACTTTTAGATTTAAAGAATCTGAAAGT
TATTATGCAAGTTGGACAATGAAATATAATTCTACAACATTAGTAGATGC
TCAAGTTTCATTTGACTGCGGTACACCATCAGGTGGTTTTAGAAATTGTT
TATTAATTACTAATAGACGAATGTCAAGATTATTTGGGACAACTTCATCA
ACATTTTGTGCAGTTGATAGTAGTGGACAAGTTTGTTTTATTTCGATGAC
AAATGCTAAAATTCCATCACCAATTAATGTAAAATTTACTAGTAAACCAT
CAACAAAGGGCGGTAATGTAATTGTCACTGGAAATTATTTAAGATTATTA
TCTCAACAACTTAATATTATTCAATCATCAACAAATGTAACTATTAAAGT
AATTGGAAATTTTGAAGATCCAACATTTGATTGTAATAATCTAACATTAT
CATTCCCACCAGGATCTGGCAAAATGGATTTAATGTTTGACTTGGTTAAA
AAATTTGAATTTTCATATGAATCTCCAATTATAAATTCAATAAATTATGA
TCCAAATAATTCAAAGATTTCGATTTATGGTGATAATATTTATACTGAAA
AACAACTTATAAATATTCTATTCAATGGTATATCACNNNNNNNNN-----
-----CCAATTTCAATTAATAATGATGAAACCCCAATTAATATTTAATTT
ACAAAAATCAAAATGTAAACCAATTGTTACAATTATTCATAATAATTTTT
CATCAAATTCAATTACCATTAAAACACCATTAACAATTACATCATTAAAT
TCACCATTTGTTTCAAACACTTCATCATTAACTTTAAATTTAATTAATTA
TGATTGTACAAATACTGCTAAAGTTTCATCAATTATTGATAACTCTTTTA
AAAATGAAATCACATGTTCAAAACCATCTATTCAACAAAATTCAGAATAT
TATTCAACAATTTGTCAAATTCCTCCAGGTACCGGTAAACATTCAATACA
AATTAAATATCAAACTGAAAATTCAACAACCCAATTCTCATATATGCAAC
CATCAATTACATCTTTTGAAATTTATAATATGACAGTAGTAACGATTTAT
GGATATAATTTTGGTACAGAAATTTCATTATTAAAAGTAAATTTCTCTGG
TAGAAATCCAGAGATTCAAACTATCAATGATAATAAATTTACTTTTACTT
TAATAGAATCTGATTATAATTCTCTATTAAACATTACTGTTGATGGTATA
CAATCACAATCATCAATACAAATAATAAAACCAACTCCCACACCAACTCC
TTCCCTCATAACACCATCGCCAACTCCAGTTGAGAAAAATGAAAGTTCAG
CATTCTCACTTGGTTTAAACAACAATTTAATTTTATTCATTTCAATATTA
CATTTAATTTATATAAATTATTTAAATAAAAAATAAAAGAAAATAAATTG
TATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTAAAAATATAA
Gap gap included
Contig length 1537
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1862240
End point 1860712
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 7
Link to clone list U11762
List of clone(s) 

est1=CHH325F,1,686
est2=AHD724Z,687,1321
est3=CHQ469Z,759,1315
est4=CHE531Z,815,1382
est5=CHH325Z,840,1472
est6=SLA871E,952,1495
est7=SSL841E,952,1534
Translated Amino Acid sequence 
FLKSVVQSIRAPNPESINLTPTNITFRFKESESYYASWTMKYNSTTLVDAQVSFDCGTPS
GGFRNCLLITNRRMSRLFGTTSSTFCAVDSSGQVCFISMTNAKIPSPINVKFTSKPSTKG
GNVIVTGNYLRLLSQQLNIIQSSTNVTIKVIGNFEDPTFDCNNLTLSFPPGSGKMDLMFD
LVKKFEFSYESPIINSINYDPNNSKISIYGDNIYTEKQLINILFNGISXXX---

---QFQLIMMKPQLIFNLQKSKCKPIVTIIHNNFSSNSITIKTPLTITSLNSPFVSNTSS
LTLNLINYDCTNTAKVSSIIDNSFKNEITCSKPSIQQNSEYYSTICQIPPGTGKHSIQIK
YQTENSTTQFSYMQPSITSFEIYNMTVVTIYGYNFGTEISLLKVNFSGRNPEIQTINDNK
FTFTLIESDYNSLLNITVDGIQSQSSIQIIKPTPTPTPSLITPSPTPVEKNESSAFSLGL
NNNLILFISILHLIYINYLNKK*kkincikkkkkkkkknikni
Translated Amino Acid sequence (All Frames) 
Frame A:
ifeisgsinkst*s*ky*fntykyyf*i*ri*kllckldnei*fynisrcssfi*lryti
rwf*klfiny**tnvkiiwdnfinilcs***wtslfyfddkc*nsitn*ckiy**tinkg
r*cnchwklfkiiistt*yysiinkcny*snwkf*rsni*l**sniiiptriwqngfnv*
lg*ki*ifi*isnykfnkl*sk*fkdfdlw**yly*kttykysiqwyitxx---

---pisinndetpini*ftkikm*tncynys**ffikfnyh*ntinnyiikfticfkhfi
infkfn*l*lykyc*sfiny**lf*k*nhmfktiystkfrilfnnlsnssryr*tfntn*
isn*kfnnpiliyatinyif*nl*ydssndlwi*fwyrnfiikskflw*ksrdsnyq***
iyfyfnri*l*fsikhyc*wytitiintnnktnshtnsfphntianss*ek*kfsiltwf
kqqfnfihfnitfnlyklfk*kikenkly*kkkkkkkkkh*ky

Frame B:
FLKSVVQSIRAPNPESINLTPTNITFRFKESESYYASWTMKYNSTTLVDAQVSFDCGTPS
GGFRNCLLITNRRMSRLFGTTSSTFCAVDSSGQVCFISMTNAKIPSPINVKFTSKPSTKG
GNVIVTGNYLRLLSQQLNIIQSSTNVTIKVIGNFEDPTFDCNNLTLSFPPGSGKMDLMFD
LVKKFEFSYESPIINSINYDPNNSKISIYGDNIYTEKQLINILFNGISXXX---

---QFQLIMMKPQLIFNLQKSKCKPIVTIIHNNFSSNSITIKTPLTITSLNSPFVSNTSS
LTLNLINYDCTNTAKVSSIIDNSFKNEITCSKPSIQQNSEYYSTICQIPPGTGKHSIQIK
YQTENSTTQFSYMQPSITSFEIYNMTVVTIYGYNFGTEISLLKVNFSGRNPEIQTINDNK
FTFTLIESDYNSLLNITVDGIQSQSSIQIIKPTPTPTPSLITPSPTPVEKNESSAFSLGL
NNNLILFISILHLIYINYLNKK*kkincikkkkkkkkknikni

Frame C:
f*nqwfnq*ehlilkvli*hlqillldlknlkvimqvgq*niilqh**mlkfhltavhhq
vvleivy*llidecqdylgqlhqhfvqlivvdkfvlfr*qmlkfhhqlm*nllvnhqqra
vm*lsleii*dyylnnlilfnhqqm*llk*leilkiqhlivii*hyhshqdlakwi*clt
wlknlnfhmnlql*iq*imiqiiqrfrfmviifilknnl*ifysmvyhxxx---

---nfn****npn*yliyknqnvnqllqlfiiifhqiqlplkhh*qlhh*ihhlfqtlhh
*l*i*limivqillkfhqllitllkmkshvqnhlfnkiqniiqqfvkflqvpvniqykln
iklkiqqpnshicnhqlhllkfii*q**rfmdiilvqkfhy*k*islveiqrfklsmiin
llll**nliiily*tlllmvynhnhqyk**nqlphqllps*hhrqlqlrkmkvqhshlv*
tti*fysfqyyi*fi*ii*iknkrk*ivlkkkkkkkkktlki*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11762-1 (Contig-U11762-1Q)
/CSM_Contig/Contig-U11762-1Q.Seq.d
         (1547 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11762-1 (Contig-U11762-1Q) /CSM_Contig/Conti...  1404  0.0
Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11287-1 (Contig-U11287-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U08261-1 (Contig-U08261-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U00230-1 (Contig-U00230-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U12877-1 (Contig-U12877-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U11393-1 (Contig-U11393-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U11208-1 (Contig-U11208-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12028-1 (Contig-U12028-1Q) /CSM_Contig/Conti...    32  1.7

>Contig-U11762-1 (Contig-U11762-1Q) /CSM_Contig/Contig-U11762-1Q.Seq.d
          Length = 1547

 Score = 1404 bits (708), Expect = 0.0
 Identities = 708/708 (100%)
 Strand = Plus / Plus

                                                                        
Query: 706  ccaatttcaattaataatgatgaaaccccaattaatatttaatttacaaaaatcaaaatg 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  ccaatttcaattaataatgatgaaaccccaattaatatttaatttacaaaaatcaaaatg 765

                                                                        
Query: 766  taaaccaattgttacaattattcataataatttttcatcaaattcaattaccattaaaac 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  taaaccaattgttacaattattcataataatttttcatcaaattcaattaccattaaaac 825

                                                                        
Query: 826  accattaacaattacatcattaaattcaccatttgtttcaaacacttcatcattaacttt 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  accattaacaattacatcattaaattcaccatttgtttcaaacacttcatcattaacttt 885

                                                                        
Query: 886  aaatttaattaattatgattgtacaaatactgctaaagtttcatcaattattgataactc 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  aaatttaattaattatgattgtacaaatactgctaaagtttcatcaattattgataactc 945

                                                                        
Query: 946  ttttaaaaatgaaatcacatgttcaaaaccatctattcaacaaaattcagaatattattc 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  ttttaaaaatgaaatcacatgttcaaaaccatctattcaacaaaattcagaatattattc 1005

                                                                        
Query: 1006 aacaatttgtcaaattcctccaggtaccggtaaacattcaatacaaattaaatatcaaac 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aacaatttgtcaaattcctccaggtaccggtaaacattcaatacaaattaaatatcaaac 1065

                                                                        
Query: 1066 tgaaaattcaacaacccaattctcatatatgcaaccatcaattacatcttttgaaattta 1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tgaaaattcaacaacccaattctcatatatgcaaccatcaattacatcttttgaaattta 1125

                                                                        
Query: 1126 taatatgacagtagtaacgatttatggatataattttggtacagaaatttcattattaaa 1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 taatatgacagtagtaacgatttatggatataattttggtacagaaatttcattattaaa 1185

                                                                        
Query: 1186 agtaaatttctctggtagaaatccagagattcaaactatcaatgataataaatttacttt 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 agtaaatttctctggtagaaatccagagattcaaactatcaatgataataaatttacttt 1245

                                                                        
Query: 1246 tactttaatagaatctgattataattctctattaaacattactgttgatggtatacaatc 1305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tactttaatagaatctgattataattctctattaaacattactgttgatggtatacaatc 1305

                                                                        
Query: 1306 acaatcatcaatacaaataataaaaccaactcccacaccaactccttccctcataacacc 1365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 acaatcatcaatacaaataataaaaccaactcccacaccaactccttccctcataacacc 1365

                                                            
Query: 1366 atcgccaactccagttgagaaaaatgaaagttcagcattctcacttgg 1413
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 atcgccaactccagttgagaaaaatgaaagttcagcattctcacttgg 1413


 Score = 1360 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgaaatcagtggttcaatcaataagagcacctaatcctgaaagtattaatttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttttgaaatcagtggttcaatcaataagagcacctaatcctgaaagtattaatttaac 60

                                                                       
Query: 61  acctacaaatattacttttagatttaaagaatctgaaagttattatgcaagttggacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acctacaaatattacttttagatttaaagaatctgaaagttattatgcaagttggacaat 120

                                                                       
Query: 121 gaaatataattctacaacattagtagatgctcaagtttcatttgactgcggtacaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaatataattctacaacattagtagatgctcaagtttcatttgactgcggtacaccatc 180

                                                                       
Query: 181 aggtggttttagaaattgtttattaattactaatagacgaatgtcaagattatttgggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtggttttagaaattgtttattaattactaatagacgaatgtcaagattatttgggac 240

                                                                       
Query: 241 aacttcatcaacattttgtgcagttgatagtagtggacaagtttgttttatttcgatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacttcatcaacattttgtgcagttgatagtagtggacaagtttgttttatttcgatgac 300

                                                                       
Query: 301 aaatgctaaaattccatcaccaattaatgtaaaatttactagtaaaccatcaacaaaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaatgctaaaattccatcaccaattaatgtaaaatttactagtaaaccatcaacaaaggg 360

                                                                       
Query: 361 cggtaatgtaattgtcactggaaattatttaagattattatctcaacaacttaatattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cggtaatgtaattgtcactggaaattatttaagattattatctcaacaacttaatattat 420

                                                                       
Query: 421 tcaatcatcaacaaatgtaactattaaagtaattggaaattttgaagatccaacatttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaatcatcaacaaatgtaactattaaagtaattggaaattttgaagatccaacatttga 480

                                                                       
Query: 481 ttgtaataatctaacattatcattcccaccaggatctggcaaaatggatttaatgtttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgtaataatctaacattatcattcccaccaggatctggcaaaatggatttaatgtttga 540

                                                                       
Query: 541 cttggttaaaaaatttgaattttcatatgaatctccaattataaattcaataaattatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttggttaaaaaatttgaattttcatatgaatctccaattataaattcaataaattatga 600

                                                                       
Query: 601 tccaaataattcaaagatttcgatttatggtgataatatttatactgaaaaacaacttat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tccaaataattcaaagatttcgatttatggtgataatatttatactgaaaaacaacttat 660

                                     
Query: 661 aaatattctattcaatggtatatcac 686
           ||||||||||||||||||||||||||
Sbjct: 661 aaatattctattcaatggtatatcac 686


>Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Contig-U00469-1Q.Seq.d
          Length = 1570

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 712 tcaattaataatgatgaaac 731
           ||||||||||||||||||||
Sbjct: 224 tcaattaataatgatgaaac 243


 Score = 30.2 bits (15), Expect = 6.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 559 attttcatatgaatc 573
           |||||||||||||||
Sbjct: 592 attttcatatgaatc 606


>Contig-U11287-1 (Contig-U11287-1Q) /CSM_Contig/Contig-U11287-1Q.Seq.d
          Length = 731

 Score = 38.2 bits (19), Expect = 0.028
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 576 caattataaattcaataaa 594
           |||||||||||||||||||
Sbjct: 404 caattataaattcaataaa 422


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,031
Number of Sequences: 6905
Number of extensions: 32031
Number of successful extensions: 3510
Number of sequences better than 10.0: 377
length of query: 1547
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1531
effective length of database: 5,564,391
effective search space: 8519082621
effective search space used: 8519082621
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.26
Homology vs DNA 
Query= Contig-U11762-1 (Contig-U11762-1Q) /CSM_Contig/Contig-U11762-1Q.Seq.d
         (1547 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ365685) Dictyostelium discoideum cDNA clone:ddc36b07, 5' ...  1360   0.0    1
(AF310896) Dictyostelium discoideum RacJ (racJ) gene, comple...  1352   0.0    2
(BJ349962) Dictyostelium discoideum cDNA clone:dda38p05, 3' ...  1257   0.0    1
(BJ378280) Dictyostelium discoideum cDNA clone:ddc31m07, 3' ...  1126   0.0    1
(BJ379863) Dictyostelium discoideum cDNA clone:ddc36b07, 3' ...  1100   0.0    1
(BJ385339) Dictyostelium discoideum cDNA clone:ddc54j18, 3' ...  1092   0.0    1
(AU060288) Dictyostelium discoideum slug cDNA, clone SLA871.      878   0.0    1
(AU033474) Dictyostelium discoideum slug cDNA, clone SLA871.      710   0.0    1
(C93897) Dictyostelium discoideum slug cDNA, clone SSL841.        281   0.0    6
(AE017263) Mesoplasma florum L1 complete genome.                   40   6e-06  22
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   2e-04  24
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   3e-04  19
(AY224188) Medicago truncatula adenosylhomocysteinase (AHC1)...    40   3e-04  5
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.001  21
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.003  13
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.004  22
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.005  14
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         40   0.005  20
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.006  13
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.009  21
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    30   0.010  18
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    38   0.013  13
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.019  19
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.020  24
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    38   0.041  20
(CP000382) Clostridium novyi NT, complete genome.                  34   0.055  25
(AC146585) Medicago truncatula clone mth2-68o3, complete seq...    40   0.079  5
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.10   13
(CG952028) MBEML93TR mth2 Medicago truncatula genomic clone ...    44   0.10   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   0.11   18
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   0.12   20
(AR584244) Sequence 1 from patent US 6797466.                      36   0.13   2
(AR271569) Sequence 1 from patent US 6503729.                      36   0.13   2
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    36   0.13   2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    36   0.13   18
(AC179575) Strongylocentrotus purpuratus clone R3-8O3, WORKI...    38   0.15   5
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    36   0.18   20
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.18   18
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.19   11
(CW937683) TcB17.2_A12_T7 Tribolium BAC library Tribolium ca...    34   0.19   2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   0.27   22
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ...    34   0.35   11
(FH415057) CHO_OF4872xi14r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   0.38   2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.38   13
(AX344574) Sequence 25 from Patent WO0200932.                      36   0.38   12
(AL669947) Mouse DNA sequence from clone RP23-434D24 on chro...    48   0.40   4
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.41   20
(CP000013) Borrelia garinii PBi, complete genome.                  34   0.42   21
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.43   10
(EJ891993) 1093018447989 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.46   4
(AL031746) Plasmodium falciparum DNA from MAL1P3.                  34   0.47   9
(CP000312) Clostridium perfringens SM101, complete genome.         36   0.52   18
(EJ864039) 1093018242237 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.53   4
(CU856654) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.57   13
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    34   0.58   23
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   0.75   20
(AX392736) Sequence 26 from Patent WO0212526.                      30   0.87   10
(AR707083) Sequence 26 from patent US 6933145.                     30   0.87   10
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    34   0.87   20
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    30   0.88   16
(AF529435) Bombus morio 12S small subunit ribosomal RNA gene...    34   0.96   3
(X70810) Euglena gracilis chloroplast complete genome.             48   1.0    1
(EJ833211) 1093017588294 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.0    1
(EJ830725) 1093017579604 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.0    1
(EJ713792) 1092956795102 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.0    1
(DU738577) APKI4767.g2 HF70_10-07-02 uncultured marine micro...    48   1.0    1
(DE615637) Bombyx mori genomic DNA, Fosmid clone:GBMFno353_d...    48   1.0    1
(AY066027) Spiroplasma citri cell shape-determining protein ...    48   1.0    1
(AM285314) Spiroplasma citri GII3-3X chromosome, contig Cont...    48   1.0    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    30   1.0    15
(CU462829) Zebrafish DNA sequence from clone CH1073-392K22 i...    34   1.0    5
(AC231925) Medicago truncatula chromosome 7 clone mth2-25h7,...    44   1.1    6
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   1.2    16
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    32   1.3    13
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    32   1.3    13
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    32   1.3    9
(FH150598) CHO_OF3059xk21r1.ab1 CHO_OF3 Nicotiana tabacum ge...    38   1.4    2
(EJ746431) 1092963000103 Global-Ocean-Sampling_GS-30-02-01-1...    40   1.5    2
(EU420129) Shinkaia crosnieri mitochondrion, complete genome.      32   1.5    6
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    32   1.6    14
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   1.6    17
(BX248583) Blochmannia floridanus complete genome.                 34   1.6    21
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   1.6    21
(EJ220109) 1092351222206 Global-Ocean-Sampling_GS-27-01-01-1...    44   1.7    2
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    30   1.7    10
(BZ295381) CG1451.r1 Candida glabrata Random Genomic Library...    40   1.7    3
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   1.7    16
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   1.8    11
(BZ294126) CG0724.r1 Candida glabrata Random Genomic Library...    40   1.8    3
(AE014226) Streptococcus agalactiae 2603V/R section 36 of 10...    40   1.9    2
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    36   1.9    19
(BZ294000) CG0646.f1 Candida glabrata Random Genomic Library...    40   1.9    3
(AC175935) Strongylocentrotus purpuratus clone R3-17A14, WOR...    34   1.9    8
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   1.9    14
(BZ293474) CG0351.f1 Candida glabrata Random Genomic Library...    40   2.0    3
(AF529437) Bombus pullatus 12S small subunit ribosomal RNA g...    30   2.1    4
(AX344818) Sequence 243 from Patent WO0200927.                     34   2.1    5
(BZ294456) CG0911.f1 Candida glabrata Random Genomic Library...    40   2.1    3
(AC180494) Strongylocentrotus purpuratus clone R3-30G12, WOR...    38   2.3    7
(DX176902) OR_ABa0037H04.f OR_ABa Oryza ridleyi genomic clon...    32   2.4    4

>(BJ365685) Dictyostelium discoideum cDNA clone:ddc36b07, 5' end,
           single read.
          Length = 686

 Score = 1360 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Plus


Query: 1   atttttgaaatcagtggttcaatcaataagagcacctaatcctgaaagtattaatttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttttgaaatcagtggttcaatcaataagagcacctaatcctgaaagtattaatttaac 60


Query: 61  acctacaaatattacttttagatttaaagaatctgaaagttattatgcaagttggacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acctacaaatattacttttagatttaaagaatctgaaagttattatgcaagttggacaat 120


Query: 121 gaaatataattctacaacattagtagatgctcaagtttcatttgactgcggtacaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaatataattctacaacattagtagatgctcaagtttcatttgactgcggtacaccatc 180


Query: 181 aggtggttttagaaattgtttattaattactaatagacgaatgtcaagattatttgggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtggttttagaaattgtttattaattactaatagacgaatgtcaagattatttgggac 240


Query: 241 aacttcatcaacattttgtgcagttgatagtagtggacaagtttgttttatttcgatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacttcatcaacattttgtgcagttgatagtagtggacaagtttgttttatttcgatgac 300


Query: 301 aaatgctaaaattccatcaccaattaatgtaaaatttactagtaaaccatcaacaaaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaatgctaaaattccatcaccaattaatgtaaaatttactagtaaaccatcaacaaaggg 360


Query: 361 cggtaatgtaattgtcactggaaattatttaagattattatctcaacaacttaatattat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cggtaatgtaattgtcactggaaattatttaagattattatctcaacaacttaatattat 420


Query: 421 tcaatcatcaacaaatgtaactattaaagtaattggaaattttgaagatccaacatttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaatcatcaacaaatgtaactattaaagtaattggaaattttgaagatccaacatttga 480


Query: 481 ttgtaataatctaacattatcattcccaccaggatctggcaaaatggatttaatgtttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgtaataatctaacattatcattcccaccaggatctggcaaaatggatttaatgtttga 540


Query: 541 cttggttaaaaaatttgaattttcatatgaatctccaattataaattcaataaattatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttggttaaaaaatttgaattttcatatgaatctccaattataaattcaataaattatga 600


Query: 601 tccaaataattcaaagatttcgatttatggtgataatatttatactgaaaaacaacttat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tccaaataattcaaagatttcgatttatggtgataatatttatactgaaaaacaacttat 660


Query: 661 aaatattctattcaatggtatatcac 686
           ||||||||||||||||||||||||||
Sbjct: 661 aaatattctattcaatggtatatcac 686

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,010,177,456
Number of extensions: 132736438
Number of successful extensions: 11366059
Number of sequences better than 10.0: 241
Length of query: 1547
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1523
Effective length of database: 97,308,875,965
Effective search space: 148201418094695
Effective search space used: 148201418094695
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11762-1 (Contig-U11762-1Q) /CSM_Contig/Contig-U11762-1Q.Seq.d
         (1547 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF310896_4(AF310896|pid:none) Dictyostelium discoideum RacJ (rac...   385   e-105
FJ374930_1(FJ374930|pid:none) Dictyostelium discoideum strain QS...   156   2e-36
FJ374959_1(FJ374959|pid:none) Dictyostelium discoideum strain QS...   143   2e-32
FJ374960_1(FJ374960|pid:none) Dictyostelium discoideum strain QS...   143   2e-32
FJ374958_1(FJ374958|pid:none) Dictyostelium discoideum strain QS...   143   2e-32
FJ374956_1(FJ374956|pid:none) Dictyostelium discoideum strain QS...   143   2e-32
FJ374957_1(FJ374957|pid:none) Dictyostelium discoideum strain QS...   142   4e-32
FJ374955_1(FJ374955|pid:none) Dictyostelium discoideum strain QS...   142   4e-32
FJ374954_1(FJ374954|pid:none) Dictyostelium discoideum strain QS...   142   4e-32
FJ374967_1(FJ374967|pid:none) Dictyostelium discoideum strain QS...   142   4e-32
FJ374962_1(FJ374962|pid:none) Dictyostelium discoideum strain QS...   142   4e-32
FJ374964_1(FJ374964|pid:none) Dictyostelium discoideum strain QS...   142   4e-32
FJ374923_1(FJ374923|pid:none) Dictyostelium discoideum strain QS...   140   2e-31
FJ374933_1(FJ374933|pid:none) Dictyostelium discoideum strain QS...   138   5e-31
FJ374943_1(FJ374943|pid:none) Dictyostelium discoideum strain QS...   137   8e-31
FJ374945_1(FJ374945|pid:none) Dictyostelium discoideum strain QS...   137   8e-31
FJ374949_1(FJ374949|pid:none) Dictyostelium discoideum strain QS...   137   8e-31
FJ374931_1(FJ374931|pid:none) Dictyostelium discoideum strain QS...   137   8e-31
FJ374944_1(FJ374944|pid:none) Dictyostelium discoideum strain QS...   135   3e-30
A54280(A54280) cell differentiation protein LagC precursor - sli...   135   4e-30
FJ374927_1(FJ374927|pid:none) Dictyostelium discoideum strain QS...   134   1e-29
FJ374925_1(FJ374925|pid:none) Dictyostelium discoideum strain QS...   131   8e-29
FJ374948_1(FJ374948|pid:none) Dictyostelium discoideum strain QS...   128   6e-28
FJ374951_1(FJ374951|pid:none) Dictyostelium discoideum strain QS...   128   6e-28
AC116982_60(AC116982|pid:none) Dictyostelium discoideum chromoso...   126   2e-27
AC116982_59(AC116982|pid:none) Dictyostelium discoideum chromoso...   123   2e-26
AC116982_4(AC116982|pid:none) Dictyostelium discoideum chromosom...   111   8e-23
FJ374941_1(FJ374941|pid:none) Dictyostelium discoideum strain QS...   106   3e-21
FJ374928_1(FJ374928|pid:none) Dictyostelium discoideum strain QS...   100   1e-19
FJ374952_1(FJ374952|pid:none) Dictyostelium discoideum strain QS...    97   1e-18
AC116982_64(AC116982|pid:none) Dictyostelium discoideum chromoso...    87   2e-15
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso...    72   7e-11
AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso...    65   9e-09
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom...    59   5e-07
AC116982_63(AC116982|pid:none) Dictyostelium discoideum chromoso...    56   4e-06
AC117075_80(AC117075|pid:none) Dictyostelium discoideum chromoso...    49   4e-04
AE017308_442(AE017308|pid:none) Mycoplasma mobile 163K complete ...    41   0.14
DQ437594_52(DQ437594|pid:none) Taterapox virus strain Dahomey 19...    41   0.14
DQ437585_40(DQ437585|pid:none) Variola virus strain India 1964 7...    40   0.18
(P33871) RecName: Full=Protein F12;  &G36840(G36840) &X69198_36(...    40   0.23
DQ437591_39(DQ437591|pid:none) Variola virus strain Sumatra 1970...    40   0.23
DQ437580_39(DQ437580|pid:none) Variola virus strain Afghanistan ...    40   0.23
CP000102_735(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    39   0.40
AJ010592_119(AJ010592|pid:none) Guillardia theta DNA for complet...    39   0.52
DQ437581_39(DQ437581|pid:none) Variola virus strain Bangladesh 1...    39   0.68
(P29889) RecName: Full=Protein F12; AltName: Full=Protein F6;  &...    39   0.68
DQ437593_56(DQ437593|pid:none) Cowpox virus strain Germany 91-3,...    39   0.68
M57977_8(M57977|pid:none) Vaccinia virus strain LIVP FE1 (FE1) g...    39   0.68
DQ441416_41(DQ441416|pid:none) Variola virus strain Benin, Dahom...    39   0.68
A71661(A71661) hypothetical protein RP563 - Rickettsia prowazeki...    39   0.68
AM501482_56(AM501482|pid:none) Vaccinia virus Ankara strain chor...    37   1.5
CP000102_47(CP000102|pid:none) Methanosphaera stadtmanae DSM 309...    37   1.5
X94355_55(X94355|pid:none) Cowpox virus strain GRI-90, complete ...    37   2.0
DQ011155_44(DQ011155|pid:none) Monkeypox virus strain Zaire_1979...    37   2.0
EU410304_67(EU410304|pid:none) Vaccinia virus GLV-1h68, complete...    37   2.0
(Q8ILR9) RecName: Full=LRR domain-containing protein PF14_0175; ...    37   2.0
DQ011154_44(DQ011154|pid:none) Monkeypox virus strain Congo_2003...    37   2.0
AY741551_38(AY741551|pid:none) Monkeypox virus isolate Sierra Le...    37   2.0
(Q80HX6) RecName: Full=Protein F12;  &AY243312_51(AY243312|pid:n...    37   2.0
DQ011156_41(DQ011156|pid:none) Monkeypox virus strain Liberia_19...    37   2.0
EU428546_1(EU428546|pid:none) Flavobacterium psychrophilum strai...    37   2.6
CP000102_139(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    37   2.6
FM954972_1292(FM954972|pid:none) Vibrio splendidus LGP32 chromos...    36   3.4
DQ792504_68(DQ792504|pid:none) Horsepox virus isolate MNR-76, co...    36   3.4
DQ439815_59(DQ439815|pid:none) Vaccinia virus strain DUKE, compl...    36   3.4
DQ377945_52(DQ377945|pid:none) Vaccinia virus strain 3737, compl...    36   3.4
CP000102_1415(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    36   3.4
AY313847_59(AY313847|pid:none) Vaccinia virus strain Acambis clo...    36   3.4
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...    36   4.4
FM992689_322(FM992689|pid:none) Candida dubliniensis CD36 chromo...    36   4.4
(Q54S20) RecName: Full=Mediator of RNA polymerase II transcripti...    35   5.7
(Q54Z23) RecName: Full=Integrator complex subunit 6 homolog;           35   7.5
(P74737) RecName: Full=Protein recA; AltName: Full=Recombinase A...    35   7.5
AL844504_250(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.7
(Q5UPQ0) RecName: Full=Putative F-box protein R757;  &AY653733_7...    35   9.7
CR380953_171(CR380953|pid:none) Candida glabrata strain CBS138 c...    35   9.7
AF091239_1(AF091239|pid:none) Plasmodium falciparum c-13 antigen...    35   9.7
CP000939_126(CP000939|pid:none) Clostridium botulinum B1 str. Ok...    35   9.7
FN357419_21(FN357419|pid:none) Schistosoma mansoni genome sequen...    35   9.7

>AF310896_4(AF310896|pid:none) Dictyostelium discoideum RacJ (racJ)
            gene, complete cds; LagC-like protein (lagC3) gene,
            partial cds; and unknown genes.
          Length = 338

 Score =  385 bits (990), Expect = e-105
 Identities = 208/284 (73%), Positives = 218/284 (76%), Gaps = 1/284 (0%)
 Frame = +2

Query: 560  FSYESPIINSIN-YDPNNSKISIYGDNIYTEKQLINILFNGISXXXXXXXQFQLIMMKPQ 736
            F+Y  P + S      N++ +++ G N      L+N     I           +   + Q
Sbjct: 34   FTYGKPTLYSHTPIKSNDTTVTLVGINF----GLLNETIIKIQGLNDNILPISINNDETQ 89

Query: 737  LIFNLQKSKCKPIVTIIHNNFSSNSITIKTPLTITSLNSPFVSNTSSLTLNLINYDCTNT 916
            LIFNLQKSKCKPIVTIIHNNFSSNSITIKTPLTITSLNSPFVSNTSSLTLNLINYDCTNT
Sbjct: 90   LIFNLQKSKCKPIVTIIHNNFSSNSITIKTPLTITSLNSPFVSNTSSLTLNLINYDCTNT 149

Query: 917  AKVSSIIDNSFKNEITCSKPSIQQNSEYYSTICQIPPGTGKHSIQIKYQTENSTTQFSYM 1096
            AKVSSIIDNSFKNEITCSKPSIQQNSEYYSTICQIPPGTGKHSIQIKYQTENSTTQFSYM
Sbjct: 150  AKVSSIIDNSFKNEITCSKPSIQQNSEYYSTICQIPPGTGKHSIQIKYQTENSTTQFSYM 209

Query: 1097 QPSITSFEIYNMTVVTIYGYNFGTEISLLKVNFSGRNPEIQTINDNKFTFTLIESDYNSL 1276
            QPSITSFEIYNMTVVTIYGYNFGTEISLLKVNFSGRNPEIQTINDNKFTFTLIESDYNSL
Sbjct: 210  QPSITSFEIYNMTVVTIYGYNFGTEISLLKVNFSGRNPEIQTINDNKFTFTLIESDYNSL 269

Query: 1277 LNITVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKNESSAFS 1408
            LNITVDG                           VEKNESSAFS
Sbjct: 270  LNITVDGIQSQSSIQIIKPTPTPTPSLITPSPTPVEKNESSAFS 313

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,050,203,164
Number of extensions: 39791388
Number of successful extensions: 115996
Number of sequences better than 10.0: 79
Number of HSP's gapped: 115655
Number of HSP's successfully gapped: 128
Length of query: 515
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 382
Effective length of database: 620,718,517
Effective search space: 237114473494
Effective search space used: 237114473494
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.62  gvh: 0.45  alm: 0.32  top: 0.77  tms: 0.07  mit: 0.38  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U11762-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0