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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11755-1
Contig ID Contig-U11755-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Contig-U11755-1Q.Seq.d
CTGTTGGCCTACTGGCTATCCAATTAAACGAGTGGAAGTGAAAAATTTAT
AAAAAGAGAAAAGTAAAAGGATAGTGAAATAGGGATTTAGAAATTAATTT
TTATAATTTTATTTAATTTTATTTTCTCAATTAAACAGAACAAAATAAAA
AAAAAA----------TAAGTAGTTGGGTTTATTCACCTAAAGTAGTACA
ACCATTATCATTCTATGAAACTGGATCAAGTTTAATGATATTGTATGAAT
TATGTCTATCAAAATGATCATTTTGTAAACATGTTGGTAAAAGGTGGATT
ACCATTTGCAAATGGTGGTGAAAATGGTTCAACATGTCCAGATATCATTA
AACAATTCTTTAGTTTTTGTGCTTATTTAGCATCGGATGCTCAAAAGGAT
TTGAAAACCATTTACTCTAGAATGGCATTGTTAATATTACTTTGCATTTG
TGAAAAGAGAGAATTGGAAGATTTCTTTCATGATATTAAATCAACTTGTT
ATATCTTTATCTACTCAAAGAAATCATTGTTCTCAGATCCAAAGGAAACT
GAAAAACATCCTTTATCATGTTGGACATTGGATATTTTATCTCAATTAAA
CATCAAATGTAATCTCAAAGGTAAAATCTCAATGGATGTTCATCAAAGTG
CTGTAGATTGTATTCATCGTATAGTATCTTATAAAAAGAAAACTTTAAAT
CGTTTACCTTATAAATGGAGTGAACTTTGGAGTGCTTTATTCTCTTTAAT
TTCAATGGTTTCAACTTTAAATATTTCAAATGATAAAATTCAATTAAATC
AATCAATTCATGTTGGGTATAAGTACTGTTAATATTTTTAATCTTTTTAT
AAATTATGGTGATTCATTTTTACCAAGTCCAAATGATTATGATGAATTAT
TTTATGAAATTATTCGTTCTGGTCAAGTTATTGAAAATTTTTATCAATTT
ATTTTAAACCAAACAACAACTGGAGGTCAAAGTGTTACATCTCCATCAGC
AGCAGCATCAGCATCTAATCCAACAACACCAAACTCCATTATCACCTCAA
CAATTACCAACTATTACTACTACTACTACTACCATCACTTCTAATAATGA
ATCAAATAATCCATTATTAAATCAATTATTAAATATAAGATCAATCGTTC
AACACTTTACAAGTAAACTTGAAGAGTGGTCAGCAAATAATGCAGAGGTT
GCTTTAACTGCACCACAAGTTTCAAAAATCATTAAAGATAATTATGATAC
ACTCAGACTTAAACTTCAAGAGAATTTAGATCAATTTGAACCATATGTTG
AAAATCCAAAAGAAGTTTTATTCTTTAAACATATTATTAAAGAATTAATT
AANATTTAAGGCAAACAAA
Gap gap included
Contig length 1359
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6611885
End point 6613236
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 13
Link to clone list U11755
List of clone(s) 

est1=CHP615F,1,156
est2=CHG806F,12,156
est3=CHK477F,14,156
est4=VHB588F,14,156
est5=VHB588Z,14,140
est6=SFG581F,157,794
est7=SFG879F,202,323
est8=AFN561F,382,965
est9=CHP615Z,629,1146
est10=CHG806Z,745,1142
est11=AFN561Z,766,1359
est12=CHK477Z,785,1153
est13=SFG581Z,984,1362
Translated Amino Acid sequence 
llaywlsn*tsgsekfikrek*kdseigi*KLIFIILFNFIFSIKQNKIKKK---

---SSWVYSPKVVQPLSFYETGSSLMILYELCLSK*sfckhvgkrwitickww*kwfnms
ryh*til*flclfsigcskgfenhll*ngivnitlhl*kerigrfls*y*inllylyllk
eiivlrskgn*ktsfimldigyfisikhqm*sqr*nlngcsskccrlyssysil*kenfk
sftl*me*tlecfilfnfngfnfkyfk**nsiksinscwv*vlliflifl*imvihfyqv
qmimmnyfmklfvlvkllkifinlf*tkqqlevkvlhlhqqqhqhliqqhqtplspqqlp
tittttttitsnnesnnpllnqllnirsivqhftskleewsannaevaltapqvskiikd
nydtlrlklqenldqfepyvenpkevlffkhiikelixi*gkq
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywlsn*tsgsekfikrek*kdseigi*KLIFIILFNFIFSIKQNKIKKK---

---*vvgfihlk*ynhyhsmkldqv**ycmnyvyqndhfvnmlvkgglpfanggengstc
pdiikqffsfcaylasdaqkdlktiysrmallillcicekreledffhdikstcyifiys
kkslfsdpketekhplscwtldilsqlnikcnlkgkismdvhqsavdcihrivsykkktl
nrlpykwselwsalfslismvstlnisndkiqlnqsihvgykyc*yf*sfyklw*fiftk
sk*l**iil*nysfwssy*kflsiyfkpnnnwrskcyisisssisi*snntklhyhlnny
qlllllllpsllimnqiihy*iny*i*dqsfntlqvnlksgqqimqrll*lhhkfqkslk
iimihsdlnfkri*inlnhmlkiqkkfyslnillkn*lxfkank

Frame B:
cwptgypikrvevknl*kekskrivk*gfrn*fl*fylilfsqlnrtk*kk---

---k*lglft*ssttiiil*nwikfndiv*imsikmiil*tcw*kvdyhlqmvvkmvqhv
qislnnslvfvli*hrmlkri*kpftlewhc*yyfafvkrenwkisfmilnqlvislstq
rnhcsqiqrklknilyhvghwifyln*tsnviskvksqwmfikvl*ivfiv*ylikrkl*
ivylingvnfgvlysl*fqwfql*ifqmikfn*inqfmlgistvnifnlfinygdsflps
pndydelfyeiirsgqvienfyqfilnqtttggqsvtspsaaasasnpttpnsiitstit
nyyyyyyyhhf***ik*siiksiikykinrstlyk*t*rvvsk*crgcfncttsfknh*r
*l*ytqt*tsrefrsi*tic*kskrsfil*tyy*rin*xlrqt

Frame C:
vgllaiqlnewk*kiykkrkvkg**nrdleinfynfi*fyfln*teqnkkk---

---SSWVYSPKVVQPLSFYETGSSLMILYELCLSK*sfckhvgkrwitickww*kwfnms
ryh*til*flclfsigcskgfenhll*ngivnitlhl*kerigrfls*y*inllylyllk
eiivlrskgn*ktsfimldigyfisikhqm*sqr*nlngcsskccrlyssysil*kenfk
sftl*me*tlecfilfnfngfnfkyfk**nsiksinscwv*vlliflifl*imvihfyqv
qmimmnyfmklfvlvkllkifinlf*tkqqlevkvlhlhqqqhqhliqqhqtplspqqlp
tittttttitsnnesnnpllnqllnirsivqhftskleewsannaevaltapqvskiikd
nydtlrlklqenldqfepyvenpkevlffkhiikelixi*gkq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11755-1 (Contig-U11755-1Q)
/CSM_Contig/Contig-U11755-1Q.Seq.d
         (1369 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Conti...  1780  0.0
Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11416-1 (Contig-U11416-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14146-1 (Contig-U14146-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12493-1 (Contig-U12493-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U04947-1 (Contig-U04947-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U11710-1 (Contig-U11710-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U14016-1 (Contig-U14016-1Q) /CSM_Contig/Conti...    30  6.0

>Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Contig-U11755-1Q.Seq.d
          Length = 1369

 Score = 1780 bits (898), Expect = 0.0
 Identities = 898/898 (100%)
 Strand = Plus / Plus

                                                                        
Query: 167  taagtagttgggtttattcacctaaagtagtacaaccattatcattctatgaaactggat 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167  taagtagttgggtttattcacctaaagtagtacaaccattatcattctatgaaactggat 226

                                                                        
Query: 227  caagtttaatgatattgtatgaattatgtctatcaaaatgatcattttgtaaacatgttg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227  caagtttaatgatattgtatgaattatgtctatcaaaatgatcattttgtaaacatgttg 286

                                                                        
Query: 287  gtaaaaggtggattaccatttgcaaatggtggtgaaaatggttcaacatgtccagatatc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287  gtaaaaggtggattaccatttgcaaatggtggtgaaaatggttcaacatgtccagatatc 346

                                                                        
Query: 347  attaaacaattctttagtttttgtgcttatttagcatcggatgctcaaaaggatttgaaa 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347  attaaacaattctttagtttttgtgcttatttagcatcggatgctcaaaaggatttgaaa 406

                                                                        
Query: 407  accatttactctagaatggcattgttaatattactttgcatttgtgaaaagagagaattg 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  accatttactctagaatggcattgttaatattactttgcatttgtgaaaagagagaattg 466

                                                                        
Query: 467  gaagatttctttcatgatattaaatcaacttgttatatctttatctactcaaagaaatca 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  gaagatttctttcatgatattaaatcaacttgttatatctttatctactcaaagaaatca 526

                                                                        
Query: 527  ttgttctcagatccaaaggaaactgaaaaacatcctttatcatgttggacattggatatt 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  ttgttctcagatccaaaggaaactgaaaaacatcctttatcatgttggacattggatatt 586

                                                                        
Query: 587  ttatctcaattaaacatcaaatgtaatctcaaaggtaaaatctcaatggatgttcatcaa 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  ttatctcaattaaacatcaaatgtaatctcaaaggtaaaatctcaatggatgttcatcaa 646

                                                                        
Query: 647  agtgctgtagattgtattcatcgtatagtatcttataaaaagaaaactttaaatcgttta 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  agtgctgtagattgtattcatcgtatagtatcttataaaaagaaaactttaaatcgttta 706

                                                                        
Query: 707  ccttataaatggagtgaactttggagtgctttattctctttaatttcaatggtttcaact 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ccttataaatggagtgaactttggagtgctttattctctttaatttcaatggtttcaact 766

                                                                        
Query: 767  ttaaatatttcaaatgataaaattcaattaaatcaatcaattcatgttgggtataagtac 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  ttaaatatttcaaatgataaaattcaattaaatcaatcaattcatgttgggtataagtac 826

                                                                        
Query: 827  tgttaatatttttaatctttttataaattatggtgattcatttttaccaagtccaaatga 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  tgttaatatttttaatctttttataaattatggtgattcatttttaccaagtccaaatga 886

                                                                        
Query: 887  ttatgatgaattattttatgaaattattcgttctggtcaagttattgaaaatttttatca 946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  ttatgatgaattattttatgaaattattcgttctggtcaagttattgaaaatttttatca 946

                                                                        
Query: 947  atttattttaaaccaaacaacaactggaggtcaaagtgttacatctccatcagcagcagc 1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  atttattttaaaccaaacaacaactggaggtcaaagtgttacatctccatcagcagcagc 1006

                                                                      
Query: 1007 atcagcatctaatccaacaacaccaaactccattatcacctcaacaattaccaactat 1064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 atcagcatctaatccaacaacaccaaactccattatcacctcaacaattaccaactat 1064


 Score =  563 bits (284), Expect = e-160
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1083 catcacttctaataatgaatcaaataatccattattaaatcaattattaaatataagatc 1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 catcacttctaataatgaatcaaataatccattattaaatcaattattaaatataagatc 1142

                                                                        
Query: 1143 aatcgttcaacactttacaagtaaacttgaagagtggtcagcaaataatgcagaggttgc 1202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 aatcgttcaacactttacaagtaaacttgaagagtggtcagcaaataatgcagaggttgc 1202

                                                                        
Query: 1203 tttaactgcaccacaagtttcaaaaatcattaaagataattatgatacactcagacttaa 1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 tttaactgcaccacaagtttcaaaaatcattaaagataattatgatacactcagacttaa 1262

                                                                        
Query: 1263 acttcaagagaatttagatcaatttgaaccatatgttgaaaatccaaaagaagttttatt 1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 acttcaagagaatttagatcaatttgaaccatatgttgaaaatccaaaagaagttttatt 1322

                                                           
Query: 1323 ctttaaacatattattaaagaattaattaanatttaaggcaaacaaa 1369
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 ctttaaacatattattaaagaattaattaanatttaaggcaaacaaa 1369


 Score =  167 bits (84), Expect = 4e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctgttggcctactggctatccaattaaacgagtggaagtgaaaaatttataaaaagagaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctgttggcctactggctatccaattaaacgagtggaagtgaaaaatttataaaaagagaa 60

                                  
Query: 61 aagtaaaaggatagtgaaataggg 84
          ||||||||||||||||||||||||
Sbjct: 61 aagtaaaaggatagtgaaataggg 84


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 ctcaattaaacagaacaaaat 146
           |||||||||||||||||||||
Sbjct: 126 ctcaattaaacagaacaaaat 146


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 260 caaaatgatcattttg 275
           ||||||||||||||||
Sbjct: 275 caaaatgatcattttg 260


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 301 accatttgcaaatggt 316
           ||||||||||||||||
Sbjct: 316 accatttgcaaatggt 301


>Contig-U14803-1 (Contig-U14803-1Q) /CSM_Contig/Contig-U14803-1Q.Seq.d
          Length = 869

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1101 atcaaataatccattattaa 1120
            ||||||||||||||||||||
Sbjct: 25   atcaaataatccattattaa 6


>Contig-U11416-1 (Contig-U11416-1Q) /CSM_Contig/Contig-U11416-1Q.Seq.d
          Length = 958

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 773 atttcaaatgataaaattca 792
           ||||||||||||||||||||
Sbjct: 622 atttcaaatgataaaattca 641


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,298
Number of Sequences: 6905
Number of extensions: 25298
Number of successful extensions: 3544
Number of sequences better than 10.0: 744
length of query: 1369
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1353
effective length of database: 5,564,391
effective search space: 7528621023
effective search space used: 7528621023
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.26
Homology vs DNA 
Query= Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Contig-U11755-1Q.Seq.d
         (1369 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ328549) Dictyostelium discoideum cDNA clone:dda28i15, 5' ...   842   0.0    2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...   680   0.0    3
(BJ391030) Dictyostelium discoideum cDNA clone:dds14a21, 5' ...   680   0.0    4
(BJ383476) Dictyostelium discoideum cDNA clone:ddc53m04, 3' ...   422   0.0    4
(BJ345720) Dictyostelium discoideum cDNA clone:dda28i15, 3' ...   563   0.0    4
(BJ379530) Dictyostelium discoideum cDNA clone:ddc35l02, 3' ...   430   0.0    4
(BJ400772) Dictyostelium discoideum cDNA clone:dds14a21, 3' ...   547   0.0    2
(BJ381850) Dictyostelium discoideum cDNA clone:ddc42j20, 3' ...   462   0.0    3
(BJ391067) Dictyostelium discoideum cDNA clone:dds14n20, 5' ...   226   2e-54  1
(BJ419071) Dictyostelium discoideum cDNA clone:ddv34o21, 5' ...   137   4e-33  2
(BJ367477) Dictyostelium discoideum cDNA clone:ddc42j20, 5' ...   137   4e-33  2
(BJ365377) Dictyostelium discoideum cDNA clone:ddc35l02, 5' ...   137   4e-33  2
(BJ437656) Dictyostelium discoideum cDNA clone:ddv34o21, 3' ...   137   9e-31  2
(BJ370173) Dictyostelium discoideum cDNA clone:ddc53m04, 5' ...    70   4e-30  4
(EE132298) SiJWB12AAJ Lausanne fire ant library Solenopsis i...    62   6e-05  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.001  14
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    44   0.003  19
(ES613982) NGPA152TR NGPA Nasonia giraulti cDNA, mRNA sequence.    42   0.022  2
(CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen...    36   0.044  20
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.045  12
(CL573827) OB__Ba0019J02.r OB__Ba Oryza brachyantha genomic ...    42   0.058  2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   0.061  17
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   0.074  13
(AR584244) Sequence 1 from patent US 6797466.                      36   0.084  25
(CL564196) OB__Ba0027L11.f OB__Ba Oryza brachyantha genomic ...    42   0.087  2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.093  13
(AC221596) Bos taurus clone CH240-391D11, WORKING DRAFT SEQU...    38   0.11   9
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    42   0.12   17
(CU571154) M.truncatula DNA sequence from clone MTH2-59O16 o...    40   0.12   8
(AR271569) Sequence 1 from patent US 6503729.                      36   0.16   24
(AL035476) Plasmodium falciparum MAL4P3.                           42   0.17   14
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.17   10
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.22   1
(AC073391) Oryza sativa (japonica cultivar-group) chromosome...    50   0.22   1
(CU469451) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.22   1
(CU469340) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.22   1
(CU468194) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.22   1
(EI240510) OR__Ba0039C17.r OR__Ba Oryza rufipogon genomic cl...    50   0.22   1
(DE144529) Bombyx mori genomic DNA, Fosmid clone:RO0282-M07_R.     50   0.22   1
(CT090110) Sus scrofa genomic clone PigE-168C21, genomic sur...    50   0.22   1
(CR869029) Sus scrofa BES.                                         50   0.22   1
(CE781827) tigr-gss-dog-17000330658155 Dog Library Canis lup...    50   0.22   1
(AC225452) Medicago truncatula clone mth2-155p21, WORKING DR...    42   0.24   5
(EV781730) HA_MX1_12e01_SP6 Lobster Multiple Tissues, Normal...    44   0.25   2
(BX248583) Blochmannia floridanus complete genome.                 32   0.25   17
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   0.26   12
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    36   0.30   23
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    44   0.31   19
(BJ326437) Dictyostelium discoideum cDNA clone:dda16a17, 5' ...    30   0.35   4
(AC149424) Populus trichocarpa clone Pop1-011N15, complete s...    34   0.36   10
(AC220745) Bos taurus clone CH240-347O1, WORKING DRAFT SEQUE...    48   0.42   4
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    42   0.51   7
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    42   0.52   7
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    42   0.52   7
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.54   11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.56   15
(FE465249) CAOS23666.fwd CAOS Selaginella moellendorffii mix...    34   0.64   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    38   0.69   11
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.77   16
(EJ159535) 1092344042940 Global-Ocean-Sampling_GS-27-01-01-1...    34   0.79   3
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    38   0.79   11
(AM475354) Vitis vinifera contig VV78X244318.4, whole genome...    36   0.79   4
(AM054119) Eudiplodinium maggii EST, clone Em04_A09.               40   0.80   2
(AC196892) Echinops telfairi clone CH238-389G13, WORKING DRA...    36   0.82   9
(CR932746) Paramecium tetraurelia, epiplasmin, putative, com...    42   0.86   2
(AL022067) Human DNA sequence from clone RP1-134E15 on chrom...    48   0.89   1
(AC130097) Rattus norvegicus clone CH230-177D14, *** SEQUENC...    48   0.89   1
(AC225375) Nomascus leucogenys chromosome UNK clone CH271-65...    48   0.89   1
(AC220691) Bos taurus clone CH240-349N2, WORKING DRAFT SEQUE...    48   0.89   1
(AQ016620) CIT-HSP-2303F8.TF CIT-HSP Homo sapiens genomic cl...    48   0.89   1
(EI478384) PV_GBa0089P01.r PV_GBa Phaseolus vulgaris genomic...    48   0.89   1
(CL699264) SP__Ba0044L17.r SP__Ba Sorghum propinquum genomic...    48   0.89   1
(EG386996) BG01020B1B03.r1 BG01 - normalized library Leymus ...    48   0.89   1
(EG386038) BG01020B1B03.f1 BG01 - normalized library Leymus ...    48   0.89   1
(EG377478) BG01007A2G07.f1 BG01 - normalized library Leymus ...    48   0.89   1
(CA033027) HX14O11r HX Hordeum vulgare subsp. vulgare cDNA c...    48   0.89   1
(CA009266) HU13K10r HU Hordeum vulgare subsp. vulgare cDNA c...    48   0.89   1
(BJ464034) Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDN...    48   0.89   1
(AV916277) Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDN...    48   0.89   1
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.95   18
(EJ354999) 1092963629235 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.0    2
(AM468012) Vitis vinifera contig VV78X019711.8, whole genome...    38   1.0    5
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   1.0    5
(AC189417) Brassica rapa subsp. pekinensis clone KBrB062J16,...    34   1.0    7
(CJ451479) Macaca fascicularis mRNA, clone: QflA-17086, 5' e...    36   1.0    2
(AC179280) Strongylocentrotus purpuratus clone R3-45F02, WOR...    44   1.1    6
(AF303741) Chilo iridescent virus complete genome.                 36   1.1    12
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   1.2    11
(ER552109) 1093016247552 Global-Ocean-Sampling_GS-35-01-01-1...    36   1.2    2
(AC005711) Drosophila melanogaster clone BACR48M09, complete...    38   1.3    8
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    32   1.3    18
(CP000049) Borrelia turicatae 91E135, complete genome.             32   1.4    22
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    44   1.4    12
(Z98551) Plasmodium falciparum MAL3P6.                             36   1.4    11
(AC095102) Rattus norvegicus clone CH230-7J1, WORKING DRAFT ...    40   1.6    6
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          32   1.6    18
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   1.6    14
(AY182283) Buchnera aphidicola isolate OH.1304 ATP synthase ...    42   1.6    2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   1.9    19
(AM422018) Candidatus Phytoplasma australiense complete genome.    32   1.9    20

>(BJ328549) Dictyostelium discoideum cDNA clone:dda28i15, 5' end,
           single read.
          Length = 584

 Score =  842 bits (425), Expect(2) = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Plus


Query: 392 caaaaggatttgaaaaccatttactctagaatggcattgttaatattactttgcatttgt 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaaaggatttgaaaaccatttactctagaatggcattgttaatattactttgcatttgt 60


Query: 452 gaaaagagagaattggaagatttctttcatgatattaaatcaacttgttatatctttatc 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaagagagaattggaagatttctttcatgatattaaatcaacttgttatatctttatc 120


Query: 512 tactcaaagaaatcattgttctcagatccaaaggaaactgaaaaacatcctttatcatgt 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tactcaaagaaatcattgttctcagatccaaaggaaactgaaaaacatcctttatcatgt 180


Query: 572 tggacattggatattttatctcaattaaacatcaaatgtaatctcaaaggtaaaatctca 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggacattggatattttatctcaattaaacatcaaatgtaatctcaaaggtaaaatctca 240


Query: 632 atggatgttcatcaaagtgctgtagattgtattcatcgtatagtatcttataaaaagaaa 691
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggatgttcatcaaagtgctgtagattgtattcatcgtatagtatcttataaaaagaaa 300


Query: 692 actttaaatcgtttaccttataaatggagtgaactttggagtgctttattctctttaatt 751
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actttaaatcgtttaccttataaatggagtgaactttggagtgctttattctctttaatt 360


Query: 752 tcaatggtttcaactttaaatatttcaaatgataaaattcaattaaatcaatcaattcat 811
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaatggtttcaactttaaatatttcaaatgataaaattcaattaaatcaatcaattcat 420


Query: 812 gttgg 816
           |||||
Sbjct: 421 gttgg 425

 Score =  319 bits (161), Expect(2) = 0.0
 Identities = 161/161 (100%)
 Strand = Plus / Plus


Query: 816 ggtataagtactgttaatatttttaatctttttataaattatggtgattcatttttacca 875
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggtataagtactgttaatatttttaatctttttataaattatggtgattcatttttacca 483


Query: 876 agtccaaatgattatgatgaattattttatgaaattattcgttctggtcaagttattgaa 935
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agtccaaatgattatgatgaattattttatgaaattattcgttctggtcaagttattgaa 543


Query: 936 aatttttatcaatttattttaaaccaaacaacaactggagg 976
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aatttttatcaatttattttaaaccaaacaacaactggagg 584

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,783,424,211
Number of extensions: 118417026
Number of successful extensions: 11141576
Number of sequences better than 10.0: 278
Length of query: 1369
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1345
Effective length of database: 97,308,875,965
Effective search space: 130880438172925
Effective search space used: 130880438172925
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11755-1 (Contig-U11755-1Q) /CSM_Contig/Contig-U11755-1Q.Seq.d
         (1369 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6PGW3) RecName: Full=UPF0668 protein C10orf76 homolog;  &CU570...    79   4e-44
(Q6DCT2) RecName: Full=UPF0668 protein C10orf76 homolog;               76   2e-41
BC077914_1(BC077914|pid:none) Xenopus laevis MGC80822 protein, m...    76   2e-41
BC048392_1(BC048392|pid:none) Mus musculus RIKEN cDNA 9130011E15...    77   6e-38
CR861118_1(CR861118|pid:none) Pongo abelii mRNA; cDNA DKFZp459K0...    77   8e-36
AE014297_849(AE014297|pid:none) Drosophila melanogaster chromoso...    72   6e-22
BC110511_1(BC110511|pid:none) Homo sapiens chromosome 10 open re...    68   4e-19
CU633453_94(CU633453|pid:none) Podospora anserina genomic DNA ch...    44   1e-09
AP007155_998(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    42   3e-08
T51221(T51221)hypothetical protein B24M22.170 [imported] - Neuro...    41   2e-07
AL390354_15(AL390354|pid:none) Neurospora crassa DNA linkage gro...    41   2e-07
(O42972) RecName: Full=UPF0588 membrane protein C20F10.02c;  &AL...    42   0.006
CR382130_86(CR382130|pid:none) Yarrowia lipolytica strain CLIB12...    42   0.040
AK161201_1(AK161201|pid:none) Mus musculus 0 day neonate head cD...    36   3.7
CP001281_1307(CP001281|pid:none) Thauera sp. MZ1T, complete geno...    36   3.7
(Q7TNT2) RecName: Full=Fatty acyl-CoA reductase 2;          EC=1...    36   3.7

>(Q6PGW3) RecName: Full=UPF0668 protein C10orf76 homolog;
            &CU570883_2(CU570883|pid:none)
          Length = 689

 Score = 78.6 bits (192), Expect(3) = 4e-44
 Identities = 35/83 (42%), Positives = 56/83 (67%)
 Frame = +1

Query: 1099 ESNNPLLNQLLNIRSIVQHFTSKLEEWSANNAEVALTAPQVSKIIKDNYDTLRLKLQENL 1278
            E  + + + L+N+R+I+ HF  K+E ++A N    L+  QV ++++ NYDTL LKLQ+ L
Sbjct: 581  EPASKVTHALVNVRAIINHFNPKIESYAAVNHISQLSEDQVLEVVRSNYDTLTLKLQDGL 640

Query: 1279 DQFEPYVENPKEVLFFKHIIKEL 1347
            DQFE Y E P+E  FFK +++ +
Sbjct: 641  DQFERYSEQPREAGFFKELVRSI 663

 Score = 76.6 bits (187), Expect(3) = 4e-44
 Identities = 33/60 (55%), Positives = 43/60 (71%)
 Frame = +3

Query: 801 NQFMLGISTVNIFNLFINYGDSFLPSPNDYDELFYEIIRSGQVIENFYQFILNQTTTGGQ 980
           N F L +  VN+FN+FI YGD+FLP+P+ YDEL+YEIIR  QV +N Y  +L  +T  GQ
Sbjct: 519 NIFQLALQVVNLFNMFITYGDTFLPTPSSYDELYYEIIRMHQVFDNLYCMVLRVSTNAGQ 578

 Score = 68.9 bits (167), Expect(3) = 4e-44
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 4/144 (2%)
 Frame = +2

Query: 341 DIIKQFFSFCAYLASDAQKDLKTIYSRMALLILLCICEKRELEDFFHDIKSTCYIFIYSK 520
           +++  F  + + +  D + + +   +R+ L+IL CI E +  + F HD      + ++ +
Sbjct: 366 NLLITFLKYSSIVMQDTKDEHRLNSARLCLIILTCIAEDQYADAFLHDDNMNFRVNLH-R 424

Query: 521 KSLFSDPKETEKH----PLSCWTLDILSQLNIKCNLKGKISMDVHQSAVDCIHRIVSYKK 688
             +    K  +K+    PL C  LD++ +  +   +K +  MD++   V  IH+++ Y+K
Sbjct: 425 MPMRHRKKAADKNIPCRPLVCAVLDLMVEFVVTHMMK-EFPMDLYVRCVQIIHKLICYQK 483

Query: 689 KTLNRLPYKWSELWSALFSLISMV 760
           K   RL Y W ELWSAL +L+  +
Sbjct: 484 KCRVRLHYTWRELWSALINLLKFL 507

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,717,740,791
Number of extensions: 29179066
Number of successful extensions: 68610
Number of sequences better than 10.0: 16
Number of HSP's gapped: 68582
Number of HSP's successfully gapped: 37
Length of query: 456
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 324
Effective length of database: 623,955,076
Effective search space: 202161444624
Effective search space used: 202161444624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.56  alm: 0.39  top: 0.73  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U11755-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0