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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11745-1
Contig ID Contig-U11745-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Contig-U11745-1Q.Seq.d
TATTCAACACCAAATGGAATTTCTAAAATTGAATTATTCCATTTTAGTAT
CAATAATGCTTTCCAGAATTCCTATGTTTATCTTTCAACAGATTTTAACA
TTATCAGTGGTAGTCTTAATAATGGTATTATTGAATTTATTTATACTTAT
GGATTACTAAAGAATGATTTTATAGTTTTAAATATCTATGATTCAAATTC
AGAATATACAATTTTAGAACAAAATAGTTATTATCAATCATTTTTAGATA
CCCTTTCATTTCCACAACTATATGATCAAAATTATGATTTTAATGCAGAG
AATATATCAAAAATTAGTTTCTTTTATAATGACGTAAATTTAACAAATTC
ATATGGTTATAATATAATGTACCTTGAAACATATGATACTCCATTACCAT
TTAATCCATGTCTTCAAATTATACCTCAATGGGATAATATAACAATTAAA
GGTGAATGGGTAAATTCTCGTTATGAATTTATATTTTACATGCCTCCAAA
TATTGTTCCAGGAGCTTTTGAATATGCTATAAAAACTCCAAATTTACAAT
ATATTTTAAATACTGAATTACCTGATGAATTCCAATTGAATATAATTAGT
GATCATATTGATTTAATGGGACCAATTGTAACAACAATGAATAAAGAACC
AAGTTTAGGTGTGGCACTAATAGATAATGAAAATTATAATCTTAGTTGGA
CATTTACAGT----------AACTCATGGTACATGTGATGATGTATTAGG
TTGTATTTGCAATTCCCCCATGGGTTGGTGTAGATTGTAATTCTAAAGTT
ATTGTTGTACCTCAACCAGTATTTAATACAAGTTCACCAACAATTATATT
AAATGAAACGACATCAGATAATTCAGAAACTAATATAGTAGCATTAATAA
ATGTAGTTGCAATTAGAGAGATCGATTATAATAATAAAGTTTTACATATG
TATTCATTCGATAAATGGATTTATAATTCAATTAATTCAAATGTTTCAAT
ATATTCATCTAATATTATAAATAAAAATGGATCAATGACACCAATTTCAG
TAGAGATTGAATACTTTGAAAATGAAAGAAAAATTGAATTTGCAGGTCAA
GAAATTATAATGAAACCATCATCAATTAAATATACAATTTATATTGATCA
ATATCCATTTTCAACAAAATTGAGTCAATTACAATTAATTATATCAGCCA
CTGCAATAATTAATTCAAATTCAGATTCATGTTCAAATAAAGAATTTGAT
AATACAACAAGTGAAAGTTCAGATTATGTTAAATTATCAATATCAGGTAA
AAGTTTATATGGTAGATTCATAAGGAGAGCGTTGGTTGATTCAACTCCAA
TTACAATTTCAAATGAATTATTAGATAAATCATTAGGTGCAATTAGTGAT
TCTCACACATCCCAATCATTTATTGGTATTAATATACCAATCTATAATAA
AAATGTTAAAATTGATCCAGATTTCTCATTAATTCTCAATTCAAATCCAT
CAACAACAACAAATGAAAATTCAATTTGTTCTGCAAAATCAACAAAATCC
AAATCTGGTTTAACAACAGCCCAGTTAGCAGGGATAATTGTTGGTTCCGT
TGGTGCTATTGCAATTGTTTTTGCCACTGTTGTCACAATAAAAAGAAAAA
AAGCTCTAAAAAAAGAAATGAAGGTGTTTGGGAAAAAAATGCAAGCAATA
AATAATTAATAAATTGTCTTTAAAAATCAAATCGACATTTTAAAATTTTT
CCTCATNCTATTA
Gap gap included
Contig length 1753
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 5
Link to clone list U11745
List of clone(s) 

est1=CHL276F,1,505
est2=CHG664F,103,710
est3=CHL276Z,711,1503
est4=CHG664Z,970,1740
est5=SHC204Z,1006,1754
Translated Amino Acid sequence 
YSTPNGISKIELFHFSINNAFQNSYVYLSTDFNIISGSLNNGIIEFIYTYGLLKNDFIVL
NIYDSNSEYTILEQNSYYQSFLDTLSFPQLYDQNYDFNAENISKISFFYNDVNLTNSYGY
NIMYLETYDTPLPFNPCLQIIPQWDNITIKGEWVNSRYEFIFYMPPNIVPGAFEYAIKTP
NLQYILNTELPDEFQLNIISDHIDLMGPIVTTMNKEPSLGVALIDNENYNLSWTFT---

---THGTCDDVLGCICNSPMGWCRL*f*sycctstsi*ykftnnyik*ndir*frn*yss
inkcscn*rdrl***sftyvfir*mdl*fn*fkcfnifi*yyk*kwindtnfsrd*il*k
*kkn*icrsrnynetiin*iynly*sisifnkiesitinyishcnn*fkfrfmfk*ri**
ynk*kfrlc*iinir*kfiw*ihkesvg*fnsnynfk*iir*iircn**fshipiiywy*
ytnl**kc*n*srflinsqfksinnnk*kfnlfckinkiqiwfnnspvsrdncwfrwcyc
ncfchcchnkkkksskkrnegvweknasnk*lincl*ksnrhfkifphxi
Translated Amino Acid sequence (All Frames) 
Frame A:
YSTPNGISKIELFHFSINNAFQNSYVYLSTDFNIISGSLNNGIIEFIYTYGLLKNDFIVL
NIYDSNSEYTILEQNSYYQSFLDTLSFPQLYDQNYDFNAENISKISFFYNDVNLTNSYGY
NIMYLETYDTPLPFNPCLQIIPQWDNITIKGEWVNSRYEFIFYMPPNIVPGAFEYAIKTP
NLQYILNTELPDEFQLNIISDHIDLMGPIVTTMNKEPSLGVALIDNENYNLSWTFT---

---nswym**cirlylqfphglv*ivilklllylnqyliqvhqqly*mkrhqiiqkli**
h**m*lqlersiiiikfyicihsingfiiqliqmfqyihlil*ikmdq*hqfq*rlntlk
mkeklnlqvkkl**nhhqlniqfilinihfqqn*vnyn*lyqplq*liqiqihvqiknli
iqqvkvqimlnyqyqvkvymvds*gerwliqlqlqfqmny*inh*vqlvilthpnhllvl
iyqsiikmlkliqish*fsiqihqqqqmkiqfvlqnqqnpnlv*qqps*qg*llvplvll
qlflpllsq*kekkl*kkk*rclgkkckq*iinklslkikstf*nfssxy

Frame B:
iqhqmeflklnysilvsimlsripmfifqqiltlsvvvlimvllnlfilmdy*rmil*f*
ismiqiqniqf*nkiviinhf*ipfhfhnymikimilmqriyqklvsfimt*i*qihmvi
i*ctlkhmilhyhlihvfklylngii*qlkvng*ilvmnlyftclqilfqellnml*klq
iynif*ilnylmnsn*i*lviili*wdql*qq*iknqv*vwh**imkiiilvghlq---

---THGTCDDVLGCICNSPMGWCRL*f*sycctstsi*ykftnnyik*ndir*frn*yss
inkcscn*rdrl***sftyvfir*mdl*fn*fkcfnifi*yyk*kwindtnfsrd*il*k
*kkn*icrsrnynetiin*iynly*sisifnkiesitinyishcnn*fkfrfmfk*ri**
ynk*kfrlc*iinir*kfiw*ihkesvg*fnsnynfk*iir*iircn**fshipiiywy*
ytnl**kc*n*srflinsqfksinnnk*kfnlfckinkiqiwfnnspvsrdncwfrwcyc
ncfchcchnkkkksskkrnegvweknasnk*lincl*ksnrhfkifphxi

Frame C:
fntkwnf*n*iipf*yq*cfpeflclsfnrf*hyqw*s**wyy*iylylwitke*fysfk
yl*fkfriynfrtk*llsiifrypfistti*skl*f*creyikn*fll**rkfnkfiwl*
ynvp*ni*ysiti*smssnytsmg*ynn*r*mgkfsl*iyilhaskycsrsf*icyknsk
ftiyfky*it**ipieyn**sy*fngtncnnne*rtkfrcgtnr**kl*s*ldiys---

---lmvhvmmy*vvfaippwvgvdcnskvivvpqpvfntssptiilnettsdnsetniva
linvvaireidynnkvlhmysfdkwiynsinsnvsiyssniinkngsmtpisveieyfen
erkiefagqeiimkpssikytiyidqypfstklsqlqliisataiinsnsdscsnkefdn
ttsessdyvklsisgkslygrfirralvdstpitisnelldkslgaisdshtsqsfigin
ipiynknvkidpdfslilnsnpstttnensicsakstksksglttaqlagiivgsvgaia
ivfatvvtikrkkalkkemkvfgkkmqainn**ivfknqidilkfflxll
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11745-1 (Contig-U11745-1Q)
/CSM_Contig/Contig-U11745-1Q.Seq.d
         (1763 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Conti...  3190  0.0
Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Conti...    58  3e-08
Contig-U13950-1 (Contig-U13950-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13988-1 (Contig-U13988-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U13841-1 (Contig-U13841-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11937-1 (Contig-U11937-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11776-1 (Contig-U11776-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U03298-1 (Contig-U03298-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U14417-1 (Contig-U14417-1Q) /CSM_Contig/Conti...    38  0.032
Contig-U11515-1 (Contig-U11515-1Q) /CSM_Contig/Conti...    38  0.032

>Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Contig-U11745-1Q.Seq.d
          Length = 1763

 Score = 3190 bits (1609), Expect = 0.0
 Identities = 1639/1639 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    tattcaacaccaaatggaatttctaaaattgaattattccattttagtatcaataatgct 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tattcaacaccaaatggaatttctaaaattgaattattccattttagtatcaataatgct 60

                                                                        
Query: 61   ttccagaattcctatgtttatctttcaacagattttaacattatcagtggtagtcttaat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttccagaattcctatgtttatctttcaacagattttaacattatcagtggtagtcttaat 120

                                                                        
Query: 121  aatggtattattgaatttatttatacttatggattactaaagaatgattttatagtttta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aatggtattattgaatttatttatacttatggattactaaagaatgattttatagtttta 180

                                                                        
Query: 181  aatatctatgattcaaattcagaatatacaattttagaacaaaatagttattatcaatca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aatatctatgattcaaattcagaatatacaattttagaacaaaatagttattatcaatca 240

                                                                        
Query: 241  tttttagataccctttcatttccacaactatatgatcaaaattatgattttaatgcagag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tttttagataccctttcatttccacaactatatgatcaaaattatgattttaatgcagag 300

                                                                        
Query: 301  aatatatcaaaaattagtttcttttataatgacgtaaatttaacaaattcatatggttat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aatatatcaaaaattagtttcttttataatgacgtaaatttaacaaattcatatggttat 360

                                                                        
Query: 361  aatataatgtaccttgaaacatatgatactccattaccatttaatccatgtcttcaaatt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  aatataatgtaccttgaaacatatgatactccattaccatttaatccatgtcttcaaatt 420

                                                                        
Query: 421  atacctcaatgggataatataacaattaaaggtgaatgggtaaattctcgttatgaattt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atacctcaatgggataatataacaattaaaggtgaatgggtaaattctcgttatgaattt 480

                                                                        
Query: 481  atattttacatgcctccaaatattgttccaggagcttttgaatatgctataaaaactcca 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atattttacatgcctccaaatattgttccaggagcttttgaatatgctataaaaactcca 540

                                                                        
Query: 541  aatttacaatatattttaaatactgaattacctgatgaattccaattgaatataattagt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aatttacaatatattttaaatactgaattacctgatgaattccaattgaatataattagt 600

                                                                        
Query: 601  gatcatattgatttaatgggaccaattgtaacaacaatgaataaagaaccaagtttaggt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  gatcatattgatttaatgggaccaattgtaacaacaatgaataaagaaccaagtttaggt 660

                                                                        
Query: 661  gtggcactaatagataatgaaaattataatcttagttggacatttacagtnnnnnnnnnn 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  gtggcactaatagataatgaaaattataatcttagttggacatttacagtnnnnnnnnnn 720

                                                                        
Query: 721  aactcatggtacatgtgatgatgtattaggttgtatttgcaattcccccatgggttggtg 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  aactcatggtacatgtgatgatgtattaggttgtatttgcaattcccccatgggttggtg 780

                                                                        
Query: 781  tagattgtaattctaaagttattgttgtacctcaaccagtatttaatacaagttcaccaa 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tagattgtaattctaaagttattgttgtacctcaaccagtatttaatacaagttcaccaa 840

                                                                        
Query: 841  caattatattaaatgaaacgacatcagataattcagaaactaatatagtagcattaataa 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  caattatattaaatgaaacgacatcagataattcagaaactaatatagtagcattaataa 900

                                                                        
Query: 901  atgtagttgcaattagagagatcgattataataataaagttttacatatgtattcattcg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  atgtagttgcaattagagagatcgattataataataaagttttacatatgtattcattcg 960

                                                                        
Query: 961  ataaatggatttataattcaattaattcaaatgtttcaatatattcatctaatattataa 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ataaatggatttataattcaattaattcaaatgtttcaatatattcatctaatattataa 1020

                                                                        
Query: 1021 ataaaaatggatcaatgacaccaatttcagtagagattgaatactttgaaaatgaaagaa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ataaaaatggatcaatgacaccaatttcagtagagattgaatactttgaaaatgaaagaa 1080

                                                                        
Query: 1081 aaattgaatttgcaggtcaagaaattataatgaaaccatcatcaattaaatatacaattt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaattgaatttgcaggtcaagaaattataatgaaaccatcatcaattaaatatacaattt 1140

                                                                        
Query: 1141 atattgatcaatatccattttcaacaaaattgagtcaattacaattaattatatcagcca 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atattgatcaatatccattttcaacaaaattgagtcaattacaattaattatatcagcca 1200

                                                                        
Query: 1201 ctgcaataattaattcaaattcagattcatgttcaaataaagaatttgataatacaacaa 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ctgcaataattaattcaaattcagattcatgttcaaataaagaatttgataatacaacaa 1260

                                                                        
Query: 1261 gtgaaagttcagattatgttaaattatcaatatcaggtaaaagtttatatggtagattca 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gtgaaagttcagattatgttaaattatcaatatcaggtaaaagtttatatggtagattca 1320

                                                                        
Query: 1321 taaggagagcgttggttgattcaactccaattacaatttcaaatgaattattagataaat 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 taaggagagcgttggttgattcaactccaattacaatttcaaatgaattattagataaat 1380

                                                                        
Query: 1381 cattaggtgcaattagtgattctcacacatcccaatcatttattggtattaatataccaa 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 cattaggtgcaattagtgattctcacacatcccaatcatttattggtattaatataccaa 1440

                                                                        
Query: 1441 tctataataaaaatgttaaaattgatccagatttctcattaattctcaattcaaatccat 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tctataataaaaatgttaaaattgatccagatttctcattaattctcaattcaaatccat 1500

                                                                        
Query: 1501 caacaacaacaaatgaaaattcaatttgttctgcaaaatcaacaaaatccaaatctggtt 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 caacaacaacaaatgaaaattcaatttgttctgcaaaatcaacaaaatccaaatctggtt 1560

                                                                        
Query: 1561 taacaacagcccagttagcagggataattgttggttccgttggtgctattgcaattgttt 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 taacaacagcccagttagcagggataattgttggttccgttggtgctattgcaattgttt 1620

                               
Query: 1621 ttgccactgttgtcacaat 1639
            |||||||||||||||||||
Sbjct: 1621 ttgccactgttgtcacaat 1639


 Score =  141 bits (71), Expect = 3e-33
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1690 tgcaagcaataaataattaataaattgtctttaaaaatcaaatcgacattttaaaatttt 1749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 tgcaagcaataaataattaataaattgtctttaaaaatcaaatcgacattttaaaatttt 1749

                          
Query: 1750 tcctcatnctatta 1763
            ||||||||||||||
Sbjct: 1750 tcctcatnctatta 1763


>Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Contig-U11864-1Q.Seq.d
          Length = 1613

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 1107 ataatgaaaccatcatcaattaaatatacaatt 1139
            |||||||| ||||||||||||||||||||||||
Sbjct: 982  ataatgaatccatcatcaattaaatatacaatt 1014


 Score = 38.2 bits (19), Expect = 0.032
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1308 tatggtagattcataaggagagc 1330
            |||||||||||||||| ||||||
Sbjct: 1186 tatggtagattcataaagagagc 1208


 Score = 30.2 bits (15), Expect = 7.7
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 1697 aataaataattaataaatt 1715
            |||||||||||||| ||||
Sbjct: 1576 aataaataattaattaatt 1594


>Contig-U13950-1 (Contig-U13950-1Q) /CSM_Contig/Contig-U13950-1Q.Seq.d
          Length = 1336

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1697 aataaataattaataaattgt 1717
            |||||||||||||||||||||
Sbjct: 103  aataaataattaataaattgt 123


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,756
Number of Sequences: 6905
Number of extensions: 45756
Number of successful extensions: 5502
Number of sequences better than 10.0: 627
length of query: 1763
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1747
effective length of database: 5,564,391
effective search space: 9720991077
effective search space used: 9720991077
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.26
Homology vs DNA 
Query= Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Contig-U11745-1Q.Seq.d
         (1763 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ382463) Dictyostelium discoideum cDNA clone:ddc44g20, 3' ...  1516   0.0    1
(BJ365536) Dictyostelium discoideum cDNA clone:ddc35o16, 5' ...  1205   0.0    1
(BJ379696) Dictyostelium discoideum cDNA clone:ddc35o16, 3' ...   987   0.0    2
(BJ404292) Dictyostelium discoideum cDNA clone:dds28g02, 3' ...   932   0.0    2
(BJ367921) Dictyostelium discoideum cDNA clone:ddc44g20, 5' ...  1001   0.0    1
(BJ384128) Dictyostelium discoideum cDNA clone:ddc48i10, 3' ...    58   2e-07  2
(BJ380629) Dictyostelium discoideum cDNA clone:ddc38e22, 3' ...    40   3e-07  5
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    58   1e-06  5
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   1e-05  14
(BJ406325) Dictyostelium discoideum cDNA clone:dds34k23, 3' ...    38   2e-05  5
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   2e-05  20
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    44   5e-05  11
(AU285003) Dictyostelium discoideum gamete cDNA clone:FC-BS2...    50   2e-04  4
(BJ381340) Dictyostelium discoideum cDNA clone:ddc41p03, 3' ...    38   2e-04  4
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    38   4e-04  21
(BJ382175) Dictyostelium discoideum cDNA clone:ddc43k01, 3' ...    38   5e-04  4
(BX248583) Blochmannia floridanus complete genome.                 38   8e-04  20
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.001  21
(AU264336) Dictyostelium discoideum vegetative cDNA clone:VS...    38   0.002  3
(AU285009) Dictyostelium discoideum gamete cDNA clone:FC-BT0...    50   0.006  3
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.007  20
(AM180355) Clostridium difficile 630 complete genome.              38   0.008  20
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.010  19
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    40   0.012  19
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.014  16
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.015  21
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.016  14
(DV783330) HW_LIVER_53_B08 Bos taurus CF-24-HW liver cDNA li...    30   0.017  6
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    30   0.019  22
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.021  21
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.024  20
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.026  18
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com...    36   0.032  22
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.035  15
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    32   0.038  15
(L06178) Apis mellifera ligustica complete mitochondrial gen...    36   0.039  6
(AX392736) Sequence 26 from Patent WO0212526.                      32   0.056  12
(AR707083) Sequence 26 from patent US 6933145.                     32   0.056  12
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   0.061  19
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.080  12
(EK365410) 1095469395161 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.090  3
(AC160453) Glycine max clone gmp1-40e8, WORKING DRAFT SEQUEN...    36   0.095  9
(BW126919) Ciona intestinalis cDNA, clone:rcign012n13, 3' en...    38   0.10   3
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    32   0.11   22
(CU914264) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.11   11
(BW024912) Ciona intestinalis cDNA, clone:rcibd007c10, 3' en...    38   0.11   3
(AC152885) Glycine max clone gmw1-21a17, WORKING DRAFT SEQUE...    36   0.12   11
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    34   0.12   11
(DQ832717) Phytophthora sojae mitochondrion, complete genome.      36   0.13   8
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    34   0.13   13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.14   20
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   0.15   21
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.15   17
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   0.15   16
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    30   0.18   15
(AC180835) Strongylocentrotus purpuratus clone R3-3069K18, W...    36   0.19   8
(AC219559) Bos taurus clone CH240-330A13, WORKING DRAFT SEQU...    38   0.22   9
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   0.27   11
(AM442616) Vitis vinifera contig VV78X222172.11, whole genom...    50   0.29   1
(AC133837) Rattus norvegicus clone CH230-243N10, WORKING DRA...    50   0.29   1
(AC127401) Rattus norvegicus clone CH230-195E24, WORKING DRA...    50   0.29   1
(AQ697536) HS_5532_B1_F06_SP6E RPCI-11 Human Male BAC Librar...    50   0.29   1
(ER524815) 1093015624018 Global-Ocean-Sampling_GS-35-01-01-1...    50   0.29   1
(ER520870) 1093015570458 Global-Ocean-Sampling_GS-35-01-01-1...    50   0.29   1
(AY863213) Smittium culisetae mitochondrion, complete genome.      34   0.30   10
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       36   0.31   22
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    32   0.32   14
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.33   19
(AF547983) Schizosaccharomyces japonicus mitochondrial DNA, ...    34   0.38   9
(AE017197) Rickettsia typhi str. Wilmington complete genome.       38   0.40   21
(EX208179) SGT17f2_D08 library_17: tammar wallaby mammary ti...    38   0.44   2
(CT087672) Sus scrofa genomic clone PigE-137B20, genomic sur...    32   0.46   4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   0.46   15
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    32   0.47   10
(AL929049) Zebrafish DNA sequence from clone DKEY-14A13 in l...    36   0.47   10
(CT172942) Sus scrofa genomic clone PigE-142A5, genomic surv...    32   0.50   4
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    34   0.52   22
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    30   0.53   20
(AC210508) Populus trichocarpa clone POP049-N18, complete se...    36   0.56   7
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.62   16
(DX908124) KBrH043L10F KBrH, Brassica rapa HindIII BAC libra...    38   0.63   3
(AC216417) Populus trichocarpa clone POP051-F19, complete se...    34   0.65   8
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.75   16
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   0.75   14
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   0.76   13
(EK385316) 1095469480424 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.80   2
(EK340012) 1095467058699 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.81   2
(AC204970) Homo sapiens FOSMID clone ABC9-46184400I13 from c...    48   0.81   4
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    36   0.83   13
(AX392733) Sequence 23 from Patent WO0212526.                      32   0.84   10
(AR707080) Sequence 23 from patent US 6933145.                     32   0.84   10
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    38   0.88   19
(AC222404) Bos taurus clone CH240-417H7, WORKING DRAFT SEQUE...    38   0.88   4
(BJ444395) Dictyostelium discoideum cDNA clone:ddv56b09, 3' ...    38   0.90   3
(M97514) Saccharomyces douglasii mitochondrial cytochrome c ...    34   0.93   6
(CU915386) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.99   6
(CP000609) Methanococcus maripaludis C5, complete genome.          36   0.99   23
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   1.00   16
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   1.0    17
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co...    36   1.1    20

>(BJ382463) Dictyostelium discoideum cDNA clone:ddc44g20, 3' end,
            single read.
          Length = 793

 Score = 1516 bits (765), Expect = 0.0
 Identities = 765/765 (100%)
 Strand = Plus / Minus


Query: 721  aactcatggtacatgtgatgatgtattaggttgtatttgcaattcccccatgggttggtg 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  aactcatggtacatgtgatgatgtattaggttgtatttgcaattcccccatgggttggtg 734


Query: 781  tagattgtaattctaaagttattgttgtacctcaaccagtatttaatacaagttcaccaa 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733  tagattgtaattctaaagttattgttgtacctcaaccagtatttaatacaagttcaccaa 674


Query: 841  caattatattaaatgaaacgacatcagataattcagaaactaatatagtagcattaataa 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673  caattatattaaatgaaacgacatcagataattcagaaactaatatagtagcattaataa 614


Query: 901  atgtagttgcaattagagagatcgattataataataaagttttacatatgtattcattcg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613  atgtagttgcaattagagagatcgattataataataaagttttacatatgtattcattcg 554


Query: 961  ataaatggatttataattcaattaattcaaatgtttcaatatattcatctaatattataa 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553  ataaatggatttataattcaattaattcaaatgtttcaatatattcatctaatattataa 494


Query: 1021 ataaaaatggatcaatgacaccaatttcagtagagattgaatactttgaaaatgaaagaa 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  ataaaaatggatcaatgacaccaatttcagtagagattgaatactttgaaaatgaaagaa 434


Query: 1081 aaattgaatttgcaggtcaagaaattataatgaaaccatcatcaattaaatatacaattt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433  aaattgaatttgcaggtcaagaaattataatgaaaccatcatcaattaaatatacaattt 374


Query: 1141 atattgatcaatatccattttcaacaaaattgagtcaattacaattaattatatcagcca 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373  atattgatcaatatccattttcaacaaaattgagtcaattacaattaattatatcagcca 314


Query: 1201 ctgcaataattaattcaaattcagattcatgttcaaataaagaatttgataatacaacaa 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313  ctgcaataattaattcaaattcagattcatgttcaaataaagaatttgataatacaacaa 254


Query: 1261 gtgaaagttcagattatgttaaattatcaatatcaggtaaaagtttatatggtagattca 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253  gtgaaagttcagattatgttaaattatcaatatcaggtaaaagtttatatggtagattca 194


Query: 1321 taaggagagcgttggttgattcaactccaattacaatttcaaatgaattattagataaat 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193  taaggagagcgttggttgattcaactccaattacaatttcaaatgaattattagataaat 134


Query: 1381 cattaggtgcaattagtgattctcacacatcccaatcatttattggtattaatataccaa 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133  cattaggtgcaattagtgattctcacacatcccaatcatttattggtattaatataccaa 74


Query: 1441 tctataataaaaatgttaaaattgatccagatttctcattaattc 1485
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73   tctataataaaaatgttaaaattgatccagatttctcattaattc 29

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,123,450,931
Number of extensions: 135223852
Number of successful extensions: 11840871
Number of sequences better than 10.0: 274
Length of query: 1763
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1739
Effective length of database: 97,308,875,965
Effective search space: 169220135303135
Effective search space used: 169220135303135
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Contig-U11745-1Q.Seq.d
         (1763 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromoso...   201   5e-50
AC116984_70(AC116984|pid:none) Dictyostelium discoideum chromoso...   197   1e-48
AC115612_9(AC115612|pid:none) Dictyostelium discoideum chromosom...   184   3e-46
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso...   177   1e-42
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   175   4e-42
AC115680_4(AC115680|pid:none) Dictyostelium discoideum chromosom...   175   4e-42
AC116984_134(AC116984|pid:none) Dictyostelium discoideum chromos...   162   5e-38
AC117072_39(AC117072|pid:none) Dictyostelium discoideum chromoso...   158   7e-37
AC117075_93(AC117075|pid:none) Dictyostelium discoideum chromoso...   155   3e-36
AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom...   153   2e-35
AC116957_52(AC116957|pid:none) Dictyostelium discoideum chromoso...   144   5e-33
AC116984_67(AC116984|pid:none) Dictyostelium discoideum chromoso...   118   8e-25
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso...    79   7e-13
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    71   1e-10
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    70   2e-10
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    67   2e-09
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    67   2e-09
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    67   2e-09
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    67   3e-09
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    66   4e-09
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...    66   5e-09
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    62   9e-08
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...    62   9e-08
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    61   1e-07
AF001315_1(AF001315|pid:none) Dictyostelium discoideum MipAp (mi...    60   2e-07
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    58   1e-06
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    55   1e-05
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    54   2e-05
CP001405_50(CP001405|pid:none) Sulfolobus islandicus Y.N.15.51 p...    39   0.47
AL844509_293(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.47
CP001472_2571(CP001472|pid:none) Acidobacterium capsulatum ATCC ...    39   0.61
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    39   0.80
DQ088876_1(DQ088876|pid:none) Uncultured bacterium clone MEDeBAC...    37   1.8
AE017245_133(AE017245|pid:none) Mycoplasma synoviae 53, complete...    36   4.0
EU713312_1(EU713312|pid:none) Campanulastrum americanum voucher ...    35   6.7
CP000882_109(CP000882|pid:none) Hemiselmis andersenii chromosome...    35   6.7
EF673785_1(EF673785|pid:none) Plasmodium falciparum 3D7 cyclic n...    35   8.8
CU914166_773(CU914166|pid:none) Ralstonia solanacearum strain IP...    35   8.8
CU695240_351(CU695240|pid:none) Ralstonia solanacearum strain Mo...    35   8.8
EU713254_1(EU713254|pid:none) Phyteuma spicatum voucher Eddie 96...    35   8.8
AE014188_95(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    35   8.8
EF032635_5(EF032635|pid:none) Salmonella enterica strain CDC 00-...    35   8.8
AL844508_354(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   8.8

>AC116984_63(AC116984|pid:none) Dictyostelium discoideum chromosome 2
            map 2567470-3108875 strain AX4, complete sequence.
          Length = 1366

 Score =  201 bits (512), Expect = 5e-50
 Identities = 123/326 (37%), Positives = 178/326 (54%), Gaps = 13/326 (3%)
 Frame = +3

Query: 765  PPWVGVDCNSKVIVVPQPVFNTSSPTIIL-----NETTSDNSETNIVALINVVAIREIDY 929
            PPW+G DCNS+VI++PQP  NTS P+  L     N  TS+++     +LI++V++RE+D+
Sbjct: 1046 PPWIGNDCNSQVIIIPQPSTNTSQPSTELPIIDNNNQTSNSTNYLFKSLISIVSLRELDF 1105

Query: 930  NNKVLHMYSFDKWXXXXXXXXXXXXXXXXXX-----KNGSMTPISVEIEYFENERKIEFA 1094
            N+  +++Y+FDKW                        N   T I+V +E+F     I+FA
Sbjct: 1106 NSNQVNLYTFDKWIYTPINNIKSQYFTSIQSGDTKSTNTLTTNITVTLEWFNQTTIIQFA 1165

Query: 1095 GQEIIMKPSSIKYTIYIDQYPFSTKLSQLQLXXXXXXXXXXXXXXCSNKEFDNTTS-ESS 1271
               I M PSSIKYTI I +Y F  +L+ LQL              CS K F +T+  ++S
Sbjct: 1166 NNNITMNPSSIKYTIEITEYKFLKQLNSLQLVMSALFESSTSKDTCSLKVFGDTSDGDNS 1225

Query: 1272 DYVKLSISGKSLYGRFIRRALVDSTPITISNELLDKSLGAISDSHTSQSFIGINIPIYNK 1451
            ++ K+ I   SLYGRFI+RA++DS   +I N+LLD  + +I  S  SQSFIGI IP Y +
Sbjct: 1226 NFFKIQIDDHSLYGRFIKRAIIDSKVSSIENQLLDSKMNSIQTSSVSQSFIGITIPNYKQ 1285

Query: 1452 NVKIDPDFSLILXXXXXXXXXXXXICSAKSTKSKSGLTTAQLXXXXXXXXXXXXXXFATV 1631
            ++ IDPDFS+++            IC    T +KS LT+AQL                +V
Sbjct: 1286 SIIIDPDFSVLVDSKPVSNNDNNSIC----TSNKSKLTSAQLAGIIIGSIAFATVVIVSV 1341

Query: 1632 V--TIKRKKALKKEMKVFGKKMQAIN 1703
            V   +K +K+ K + KV  KK+Q IN
Sbjct: 1342 VYLVVKNRKSKKFQRKV-QKKLQTIN 1366

 Score = 38.1 bits (87), Expect = 1.0
 Identities = 49/201 (24%), Positives = 73/201 (36%), Gaps = 13/201 (6%)
 Frame = +1

Query: 148  YGLLKNDFIVLNIYDSNSEYTILEQNSYYQSFLDTLSFPQLYDQNYDFNAENISKISFFY 327
            Y      F VL+I DS  + +   Q  Y  S+     F  +  +        I  I+F
Sbjct: 488  YDFKGRGFSVLSIGDSTFKKS---QVYYVNSYFSINPFSVIDYKAPTILPVLIENITFLK 544

Query: 328  NDVNLTNSYGYNIMYLETYDTPLPFNPC-------LQIIPQWDNITIKG----EWVN--S 468
            N +++ N    NI+Y     T    +P        L       NI         W +  S
Sbjct: 545  NYIDVANKSVDNIIYFNYNGTQAHSDPSASFSLFILNSNTTESNIVFDSLKFATWNSTIS 604

Query: 469  RYEFIFYMPPNIVPGAFEYAIKTPNLQYILNTELPDEFQLNIISDHIDLMGPIVTTMNKE 648
            +Y+  F +  N  PG   + +       I N   P   QL I+S H D  GPI + + K
Sbjct: 605  KYQIKFTVLANTRPGPLSFFLMCGYQSSITNDMFPLSSQLFIVSKHFDAYGPIFSNIEK- 663

Query: 649  PSLGVALIDNENYNLSWTFTV 711
                   I++ N    W FT+
Sbjct: 664  -------INSPN-EFGWKFTI 676

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,167,319,084
Number of extensions: 38493156
Number of successful extensions: 90705
Number of sequences better than 10.0: 43
Number of HSP's gapped: 90571
Number of HSP's successfully gapped: 54
Length of query: 587
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 453
Effective length of database: 617,481,958
Effective search space: 279719326974
Effective search space used: 279719326974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.41  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U11745-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0